Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VAMP3	9341	broad.mit.edu	37	1	7837370	7837370	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr1:7837370A>T	uc001aol.2	+	3	338	c.223A>T	c.(223-225)AAT>TAT	p.N75Y		NM_004781	NP_004772	Q15836	VAMP3_HUMAN	vesicle-associated membrane protein 3	75	Cytoplasmic (Potential).				cellular membrane fusion|positive regulation of receptor recycling|protein complex assembly|protein transport|retrograde transport, endosome to Golgi|substrate adhesion-dependent cell spreading|vesicle docking involved in exocytosis	cell junction|clathrin-coated vesicle|integral to membrane|recycling endosome|synapse|synaptosome	protein binding				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;6.33e-69)|GBM - Glioblastoma multiforme(8;2.07e-34)|Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.38e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000805)|KIRC - Kidney renal clear cell carcinoma(229;0.000917)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		TTGGTGGAAGAATTGCAAGGT	0.448													3	21	---	---	---	---	0	0	1	0	0
GATAD2B	57459	broad.mit.edu	37	1	153784245	153784245	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr1:153784245G>A	uc001fdb.3	-	10	1854	c.1610C>T	c.(1609-1611)CCC>CTC	p.P537L		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	537						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			AGACAACTGGGGTGCCTGTGC	0.517													3	107	---	---	---	---	0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160105253	160105253	+	Silent	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr1:160105253G>A	uc001fvc.2	+	16	2277	c.2145G>A	c.(2143-2145)GGG>GGA	p.G715G	ATP1A2_uc001fvb.2_Silent_p.G715G|ATP1A2_uc001fvd.2_Silent_p.G451G	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	715	Cytoplasmic (Potential).		G -> R (in FHM2; de novo mutation in a sporadic case).		ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CGGGTGACGGGGTGAACGACT	0.602													5	116	---	---	---	---	0	0	1	0	0
DHX32	55760	broad.mit.edu	37	10	127548295	127548295	+	Silent	SNP	A	G	G			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr10:127548295A>G	uc001ljf.1	-	3	1217	c.726T>C	c.(724-726)CCT>CCC	p.P242P	DHX32_uc001ljg.1_Silent_p.P242P|DHX32_uc009yam.1_Silent_p.P78P	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	242						mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CAACCTCCACAGGGTGTTTAT	0.403													18	91	---	---	---	---	0	0	1	0	0
E2F8	79733	broad.mit.edu	37	11	19246838	19246838	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr11:19246838T>A	uc001mpm.2	-	12	2873	c.2351A>T	c.(2350-2352)AAC>ATC	p.N784I	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.N784I	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	784					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TGAGTCATAGTTGGTGGCCCT	0.498													17	129	---	---	---	---	0	0	1	0	0
AMICA1	120425	broad.mit.edu	37	11	118068757	118068757	+	Missense_Mutation	SNP	C	G	G	rs139352792		TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr11:118068757C>G	uc001psk.2	-	8	1135	c.961G>C	c.(961-963)GAG>CAG	p.E321Q	AMICA1_uc001psg.2_Missense_Mutation_p.E131Q|AMICA1_uc001psh.2_Missense_Mutation_p.E282Q|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Missense_Mutation_p.E311Q|AMICA1_uc001psj.2_Missense_Mutation_p.E310Q|AMICA1_uc010rxw.1_Missense_Mutation_p.E282Q|AMICA1_uc010rxx.1_Missense_Mutation_p.E321Q|AMICA1_uc001psl.1_Missense_Mutation_p.E277Q	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	321	Cytoplasmic (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TCTTTTATCTCTGGATTAGTC	0.438											OREG0021382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	105	---	---	---	---	0	0	1	0	0
STAC3	246329	broad.mit.edu	37	12	57640655	57640655	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr12:57640655C>T	uc001snp.2	-	6	730	c.535G>A	c.(535-537)GAA>AAA	p.E179K	STAC3_uc009zpl.2_5'UTR|STAC3_uc001snq.2_Missense_Mutation_p.E140K|STAC3_uc010srm.1_5'UTR	NM_145064	NP_659501	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	179					intracellular signal transduction		identical protein binding|metal ion binding			ovary(2)|skin(1)	3						CGCAGGGTTTCAAACACAGGA	0.507													12	230	---	---	---	---	0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20859812	20859812	+	Silent	SNP	G	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr14:20859812G>C	uc001vxe.2	-	13	2083	c.2043C>G	c.(2041-2043)GTC>GTG	p.V681V	TEP1_uc010ahk.2_Silent_p.V31V|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.V573V	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	681					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CTGTCAGATAGACCAAGACAG	0.532													22	184	---	---	---	---	0	0	1	0	0
FANCM	57697	broad.mit.edu	37	14	45656993	45656993	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr14:45656993T>C	uc001wwd.3	+	19	4781	c.4682T>C	c.(4681-4683)ATG>ACG	p.M1561T	FANCM_uc010anf.2_Missense_Mutation_p.M1535T|FANCM_uc001wwe.3_Missense_Mutation_p.M1097T|FANCM_uc010ang.2_Missense_Mutation_p.M775T	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1561					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GATTCTGAAATGAGAGCTATT	0.254								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				14	8	---	---	---	---	0	0	1	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102549628	102549628	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr14:102549628C>T	uc001yku.3	-	9	1688	c.1498G>A	c.(1498-1500)GAC>AAC	p.D500N	HSP90AA1_uc001ykv.3_Missense_Mutation_p.D622N|HSP90AA1_uc001ykw.1_Missense_Mutation_p.D321N|HSP90AA1_uc001ykx.1_Missense_Mutation_p.D489N	NM_005348	NP_005339	P07900	HS90A_HUMAN	heat shock 90kDa protein 1, alpha isoform 2	500					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			ovary(2)|central_nervous_system(2)|prostate(1)|lung(1)|breast(1)	7					Rifabutin(DB00615)	GCTACCTGGTCCTTGGTCTCA	0.418													6	77	---	---	---	---	0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105421471	105421471	+	Silent	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr14:105421471C>T	uc010axc.1	-	6	594	c.474G>A	c.(472-474)CAG>CAA	p.Q158Q	AHNAK2_uc001ypx.2_Silent_p.Q58Q	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	158	PDZ.					nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TACTGAGCAGCTGATCCCCTA	0.502													4	81	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	62536859	62536859	+	RNA	SNP	T	G	G			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr15:62536859T>G	uc002ain.1	-	6		c.1593A>C			uc002ajb.2_RNA|uc002ajc.2_5'Flank|uc002ajd.2_5'Flank|uc002aje.2_5'Flank|uc002ajf.2_5'Flank|uc010uhn.1_5'Flank|uc002ajg.1_5'Flank|uc002aji.2_5'Flank|uc010uho.1_5'Flank|uc002ajk.2_5'Flank|uc002ajl.2_5'Flank|uc002ajm.2_5'Flank|uc002ajn.2_5'Flank|uc002ajo.2_5'Flank|uc002ajq.2_5'Flank|uc002ajr.1_5'Flank|uc010uhp.1_5'Flank|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		GAGACTCAACTGGGCCTGTAG	0.582													3	10	---	---	---	---	0	0	1	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652													4	9	---	---	---	---	0	0	1	0	0
RPUSD1	113000	broad.mit.edu	37	16	837116	837116	+	Missense_Mutation	SNP	C	T	T	rs2272898	byFrequency	TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr16:837116C>T	uc002cka.2	-	3	604	c.370G>A	c.(370-372)GAG>AAG	p.E124K	RPUSD1_uc002ckb.2_Missense_Mutation_p.E124K|RPUSD1_uc002ckc.2_5'UTR|RPUSD1_uc002ckd.2_Intron|CHTF18_uc010uus.1_5'Flank|CHTF18_uc010bre.1_5'Flank|CHTF18_uc002cke.3_5'Flank|CHTF18_uc002ckf.3_5'Flank|CHTF18_uc010brf.2_5'Flank|CHTF18_uc002ckg.3_5'Flank	NM_058192	NP_478072	Q9UJJ7	RUSD1_HUMAN	RNA pseudouridylate synthase domain containing	124					pseudouridine synthesis		pseudouridine synthase activity|RNA binding				0		Hepatocellular(780;0.00335)				GCCCGGCCCTCCGTGCTGTTC	0.692													4	55	---	---	---	---	0	0	1	0	0
DPH1	1801	broad.mit.edu	37	17	1943643	1943643	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr17:1943643G>A	uc002fts.2	+	8	914	c.896G>A	c.(895-897)CGC>CAC	p.R299H	DPH1_uc002ftr.1_RNA|DPH1_uc002ftt.2_Missense_Mutation_p.R283H|DPH1_uc010cjx.2_Missense_Mutation_p.R159H|DPH1_uc010vqs.1_Missense_Mutation_p.R309H|DPH1_uc002ftu.2_Missense_Mutation_p.R55H|DPH1_uc002ftv.2_Missense_Mutation_p.R55H|DPH1_uc002ftw.2_Missense_Mutation_p.R27H|OVCA2_uc002ftx.2_5'Flank	NM_001383	NP_001374	Q9BZG8	DPH1_HUMAN	diptheria toxin resistance protein required for	299					peptidyl-diphthamide biosynthetic process from peptidyl-histidine|translation	cytoplasm|nucleus				pancreas(1)	1						ACTTTGGGCCGCCAGGGCAGT	0.602													14	61	---	---	---	---	0	0	1	0	0
ATAD5	79915	broad.mit.edu	37	17	29196274	29196274	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr17:29196274G>A	uc002hfs.1	+	13	3668	c.3322G>A	c.(3322-3324)GGT>AGT	p.G1108S	ATAD5_uc002hft.1_Missense_Mutation_p.G1005S	NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1108					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				AGATTTCTCGGGTGGCATAGA	0.393													8	49	---	---	---	---	0	0	1	0	0
ZNF554	115196	broad.mit.edu	37	19	2827692	2827692	+	Silent	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr19:2827692C>T	uc002lwm.2	+	3	402	c.204C>T	c.(202-204)AAC>AAT	p.N68N	ZNF554_uc002lwl.2_Silent_p.N17N	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	68	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCAGAAGAACCTGTACAGAG	0.448													14	50	---	---	---	---	0	0	1	0	0
ZNF709	163051	broad.mit.edu	37	19	12577553	12577553	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr19:12577553T>C	uc002mtv.3	-	2	276	c.115A>G	c.(115-117)AAC>GAC	p.N39D	ZNF709_uc002mtw.3_Missense_Mutation_p.N7D|ZNF709_uc002mtx.3_Missense_Mutation_p.N39D	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	39	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGGCCAAGTTAACAAAGGTT	0.428													5	45	---	---	---	---	0	0	1	0	0
C19orf57	79173	broad.mit.edu	37	19	14003691	14003691	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr19:14003691T>C	uc002mxl.1	-	5	360	c.301A>G	c.(301-303)AGG>GGG	p.R101G	C19orf57_uc002mxk.1_5'UTR|C19orf57_uc002mxm.1_Missense_Mutation_p.R101G	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	101					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GGAACAAACCTCCCGAATGAG	0.458													23	29	---	---	---	---	0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43414761	43414761	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr19:43414761C>T	uc002ovj.1	-	3	729	c.677G>A	c.(676-678)CGC>CAC	p.R226H	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.R233H|PSG6_uc002ovi.2_Missense_Mutation_p.R227H|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.R226H|PSG6_uc002ovg.1_Missense_Mutation_p.R226H	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	226	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TGGGTCACTGCGGCTGGCACT	0.522													14	291	---	---	---	---	0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	50149344	50149344	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr2:50149344G>C	uc010fbp.2	-	6	1874	c.1067C>G	c.(1066-1068)GCA>GGA	p.A356G	NRXN1_uc002rxb.3_Missense_Mutation_p.A1090G|NRXN1_uc010fbq.2_Missense_Mutation_p.A1461G|NRXN1_uc002rxe.3_Missense_Mutation_p.A1391G|NRXN1_uc010yon.1_Missense_Mutation_p.A56G|NRXN1_uc002rxa.3_Missense_Mutation_p.A53G	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	356	Extracellular (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GATCACTTCTGCTGAGCCTGG	0.532													21	40	---	---	---	---	0	0	1	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188128	70188128	+	Silent	SNP	G	A	A	rs143824935		TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr2:70188128G>A	uc002sfz.3	-	1	1270	c.693C>T	c.(691-693)GGC>GGT	p.G231G		NM_152792	NP_690005	Q53RT3	APRV1_HUMAN	aspartic peptidase, retroviral-like 1 precursor	231	Peptidase A2.|Extracellular (Potential).				protein maturation by peptide bond cleavage|skin development		aspartic-type endopeptidase activity			ovary(1)	1						TGTCCAGATCGCCATCAGTGA	0.567													6	88	---	---	---	---	0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100209825	100209825	+	Silent	SNP	G	C	C	rs143928698		TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr2:100209825G>C	uc002tag.2	-	14	2534	c.2298C>G	c.(2296-2298)CTC>CTG	p.L766L	AFF3_uc002taf.2_Silent_p.L791L|AFF3_uc010fiq.1_Silent_p.L766L|AFF3_uc010yvr.1_Silent_p.L919L|AFF3_uc002tah.1_Silent_p.L791L	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	766					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TTTTGACCCAGAGAGACCTGA	0.582													3	67	---	---	---	---	0	0	1	0	0
CXCR1	3577	broad.mit.edu	37	2	219029655	219029655	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr2:219029655T>C	uc002vhc.2	-	2	399	c.280A>G	c.(280-282)ATC>GTC	p.I94V		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	94	Helical; Name=2; (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						GCGGCCCAGATGGGCAAGGTC	0.557													41	87	---	---	---	---	0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42610592	42610592	+	Silent	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr22:42610592G>A	uc003bcj.1	-	1	854	c.720C>T	c.(718-720)TCC>TCT	p.S240S	TCF20_uc003bck.1_Silent_p.S240S|TCF20_uc003bnt.2_Silent_p.S240S	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	240	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						aggaggaggaggaAGCAGAAG	0.443													3	75	---	---	---	---	0	0	1	0	0
IMPDH2	3615	broad.mit.edu	37	3	49062646	49062646	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr3:49062646G>A	uc003cvt.2	-	10	1155	c.1063C>T	c.(1063-1065)CGG>TGG	p.R355W		NM_000884	NP_000875	P12268	IMDH2_HUMAN	inosine monophosphate dehydrogenase 2	355					GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	IMP dehydrogenase activity|metal ion binding|nucleotide binding|protein binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)	CCAAAGCGCCGTGCATACTCT	0.557													30	264	---	---	---	---	0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111671550	111671550	+	Silent	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr3:111671550C>T	uc010hqa.2	+	11	3174	c.2763C>T	c.(2761-2763)ATC>ATT	p.I921I	PHLDB2_uc003dyc.2_Silent_p.I905I|PHLDB2_uc003dyd.2_Silent_p.I878I|PHLDB2_uc003dyg.2_Silent_p.I921I|PHLDB2_uc003dyh.2_Silent_p.I878I|PHLDB2_uc003dyi.2_Intron	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	921						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GGAGAAGCATCACCCCAAAGG	0.453													16	59	---	---	---	---	0	0	1	0	0
ETV5	2119	broad.mit.edu	37	3	185766571	185766571	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr3:185766571G>A	uc003fpz.2	-	13	1637	c.1390C>T	c.(1390-1392)CGT>TGT	p.R464C	ETV5_uc003fpy.2_Missense_Mutation_p.R506C	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	464					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			AGGAACGGACGCTGGTTATCC	0.577			T	TMPRSS2|SCL45A3	Prostate 								28	31	---	---	---	---	0	0	1	0	0
LOC220729	220729	broad.mit.edu	37	3	197348634	197348634	+	RNA	SNP	G	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr3:197348634G>C	uc011bug.1	-	4		c.457C>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						CAGCAGCACCGATGGGCCTGC	0.542													4	105	---	---	---	---	0	0	1	0	0
LYAR	55646	broad.mit.edu	37	4	4276212	4276212	+	Silent	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr4:4276212G>A	uc011bvy.1	-	7	857	c.714C>T	c.(712-714)GTC>GTT	p.V238V	LYAR_uc011bvx.1_Silent_p.V121V|LYAR_uc003ght.2_Silent_p.V238V	NM_001145725	NP_001139197	Q9NX58	LYAR_HUMAN	Ly1 antibody reactive homolog	238	Lys-rich.					nucleolus	metal ion binding|protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TGGCCTCAGGGACTTCCTCCC	0.547													114	133	---	---	---	---	0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14293176	14293176	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr5:14293176T>C	uc003jff.2	+	6	1115	c.1109T>C	c.(1108-1110)ATT>ACT	p.I370T	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.I321T|TRIO_uc003jfh.1_Missense_Mutation_p.I19T	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	370	Spectrin 1.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TACACAGAGATTGGGACCAGC	0.493													26	64	---	---	---	---	0	0	1	0	0
LEMD2	221496	broad.mit.edu	37	6	33744785	33744785	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr6:33744785T>C	uc011drm.1	-	8	1320	c.1307A>G	c.(1306-1308)TAT>TGT	p.Y436C	LEMD2_uc010jvg.2_Missense_Mutation_p.Y145C|LEMD2_uc011drl.1_Missense_Mutation_p.Y134C|LEMD2_uc003ofe.2_Missense_Mutation_p.Y134C	NM_181336	NP_851853	Q8NC56	LEMD2_HUMAN	LEM domain containing 2 isoform 1	436						integral to nuclear inner membrane				central_nervous_system(1)	1						TACATATGGATAGCGCTCCAT	0.622													12	69	---	---	---	---	0	0	1	0	0
TBC1D22B	55633	broad.mit.edu	37	6	37225722	37225722	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr6:37225722G>A	uc003onn.2	+	1	175	c.29G>A	c.(28-30)TGG>TAG	p.W10*	TMEM217_uc003onl.2_5'Flank|TMEM217_uc010jwr.2_5'Flank|TMEM217_uc010jws.2_5'Flank|TMEM217_uc003onm.3_5'UTR|TBC1D22B_uc010jwt.2_RNA	NM_017772	NP_060242	Q9NU19	TB22B_HUMAN	TBC1 domain family, member 22B	10						intracellular	Rab GTPase activator activity				0			OV - Ovarian serous cystadenocarcinoma(102;0.241)			AAGCAGTTTTGGAAGAGGAGC	0.622													9	39	---	---	---	---	0	0	1	0	0
MDN1	23195	broad.mit.edu	37	6	90368423	90368423	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr6:90368423G>A	uc003pnn.1	-	89	15043	c.14927C>T	c.(14926-14928)TCT>TTT	p.S4976F		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4976					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CTGCTCCTCAGAGTGTTCTTC	0.532													12	147	---	---	---	---	0	0	1	0	0
KIF25	3834	broad.mit.edu	37	6	168430272	168430272	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr6:168430272T>A	uc003qwk.1	+	2	269	c.7T>A	c.(7-9)TGG>AGG	p.W3R	KIF25_uc010kkt.1_RNA|KIF25_uc003qwl.1_Missense_Mutation_p.W3R	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	3	Kinesin-motor.				microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity	p.W3C(1)		ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CCAGATGACATGGACCTCAGG	0.602													4	181	---	---	---	---	0	0	1	0	0
HIBADH	11112	broad.mit.edu	37	7	27570874	27570874	+	Silent	SNP	C	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:27570874C>A	uc003szf.2	-	7	984	c.789G>T	c.(787-789)GTG>GTT	p.V263V	HIBADH_uc003szg.2_Silent_p.V214V|HIBADH_uc003szh.2_Silent_p.V162V	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	263					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	CGCCATCCATCACTCCAGGTA	0.443													6	71	---	---	---	---	0.00307968	0.00307968	1	1	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657592	72657592	+	Silent	SNP	C	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:72657592C>T	uc003txs.1	-	13	2320	c.1392G>A	c.(1390-1392)CCG>CCA	p.P464P	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						tcgtggagaacggggagctga	0													26	74	---	---	---	---	0	0	1	0	0
NSUN5	55695	broad.mit.edu	37	7	72718830	72718830	+	Silent	SNP	G	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:72718830G>A	uc003txw.2	-	6	705	c.669C>T	c.(667-669)GAC>GAT	p.D223D	FKBP6_uc003twz.2_Intron|NSUN5_uc003txv.2_Silent_p.D223D|NSUN5_uc003txx.2_Silent_p.D185D|NSUN5_uc011kev.1_Silent_p.D223D	NM_018044	NP_060514	Q96P11	NSUN5_HUMAN	NOL1/NOP2/Sun domain family, member 5 isoform 2	223							methyltransferase activity				0		Lung NSC(55;0.163)				CTGGCGGGGGGTCCAGCAGCA	0.617													3	52	---	---	---	---	0	0	1	0	0
C7orf51	222950	broad.mit.edu	37	7	100086968	100086968	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:100086968G>T	uc003uvd.1	+	4	1783	c.1624G>T	c.(1624-1626)GTA>TTA	p.V542L	C7orf51_uc003uve.1_Missense_Mutation_p.V324L	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	542										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGACCCAACTGTAGGCCCCCT	0.687													12	13	---	---	---	---	1.15919e-05	1.20555e-05	1	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				25	44	---	---	---	---	0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	124992869	124992869	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr8:124992869G>T	uc003yqw.2	+	11	1434	c.1228G>T	c.(1228-1230)GCA>TCA	p.A410S		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	410	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTCAGGACGGGCACAGGAATC	0.468											OREG0018964	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	107	---	---	---	---	7.41877e-09	7.87298e-09	1	1	0
RECK	8434	broad.mit.edu	37	9	36118962	36118962	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr9:36118962C>G	uc003zyv.2	+	18	2548	c.2462C>G	c.(2461-2463)CCG>CGG	p.P821R	RECK_uc003zyw.2_Missense_Mutation_p.P693R|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	821						anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			ATCATCCCACCGGGTAGGCTG	0.557													7	148	---	---	---	---	0	0	1	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070969	141070969	+	Silent	SNP	A	G	G			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr9:141070969A>G	uc004com.2	+	4	633	c.372A>G	c.(370-372)GCA>GCG	p.A124A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TAGAAAACGCAGATGAGACCT	0.517													3	43	---	---	---	---	0	0	1	0	0
GPR101	83550	broad.mit.edu	37	X	136112949	136112949	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chrX:136112949C>G	uc011mwh.1	-	1	885	c.885G>C	c.(883-885)GAG>GAC	p.E295D		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	295	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CTACACTACTCTCACTGGTCC	0.617													30	262	---	---	---	---	0	0	1	0	0
CDR1	1038	broad.mit.edu	37	X	139866364	139866364	+	Silent	SNP	A	G	G			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chrX:139866364A>G	uc004fbg.1	-	1	360	c.168T>C	c.(166-168)GAT>GAC	p.D56D	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	56	23 X 6 AA approximate repeats.|9.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				CTTCCAGCAAATCCACGTCTT	0.438													3	102	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	5374437	5374438	+	IGR	INS	-	TCTGCC	TCTGCC	rs140175229	by1000genomes	TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr1:5374437_5374438insTCTGCC								AJAP1 (530587 upstream) : NPHP4 (548432 downstream)																							ctcataccacttctgcctctgc	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	8050348	8050349	+	IGR	INS	-	CAT	CAT	rs142105154	by1000genomes	TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr1:8050348_8050349insCAT								PARK7 (5007 upstream) : ERRFI1 (21431 downstream)																							ctcaccaccaccaccatcacca	0.000													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	34806041	34806043	+	IGR	DEL	TGC	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr1:34806041_34806043delTGC								C1orf94 (121312 upstream) : MIR552 (329157 downstream)																							Gtgctgctgttgctgctgctgtt	0.222													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134854128	134854128	+	IGR	DEL	G	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr10:134854128delG								C10orf93 (98064 upstream) : GPR123 (30305 downstream)																							gcaggtggcaggggggggggc	0.458													2	4	---	---	---	---					
CMKLR1	1240	broad.mit.edu	37	12	108735901	108735903	+	5'Flank	DEL	GAA	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr12:108735901_108735903delGAA	uc001tmw.2	-						CMKLR1_uc001tmv.2_5'Flank|CMKLR1_uc009zuv.2_5'Flank	NM_001142343	NP_001135815	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a						chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						agaggaggaggaaggaggaagag	0.010													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	57150485	57150485	+	IGR	DEL	A	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr14:57150485delA								C14orf101 (34255 upstream) : OTX2 (116942 downstream)																							ATCGGTAAGGaaaaaaaaaaa	0.239													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	85788300	85788301	+	5'Flank	INS	-	GGAGAGGG	GGAGAGGG			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr15:85788300_85788301insGGAGAGGG	uc010upk.1	+											Homo sapiens cDNA FLJ61448 complete cds, highly similar to Homo sapiens golgi autoantigen, golgin subfamily a-like, mRNA.																		gagaggctgctggagagggaga	0.124													4	4	---	---	---	---					
OGFOD1	55239	broad.mit.edu	37	16	56501895	56501895	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr16:56501895delG	uc002ejb.2	+	8	966	c.865delG	c.(865-867)GAAfs	p.E289fs	OGFOD1_uc002ejc.2_Frame_Shift_Del_p.E149fs	NM_018233	NP_060703	Q8N543	OGFD1_HUMAN	2-oxoglutarate and iron-dependent oxygenase	289							iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)	1					Vitamin C(DB00126)	AGAGTTTGAAGAAAGTTCTGA	0.383													7	45	---	---	---	---					
ZFHX3	463	broad.mit.edu	37	16	72831862	72831863	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr16:72831862_72831863insA	uc002fck.2	-	9	5391_5392	c.4718_4719insT	c.(4717-4719)TTAfs	p.L1573fs	ZFHX3_uc002fcl.2_Frame_Shift_Ins_p.L659fs	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1573					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GGGCTCTCTTTAACTTATGCAG	0.470													8	77	---	---	---	---					
MAP3K3	4215	broad.mit.edu	37	17	61744386	61744387	+	Frame_Shift_Ins	INS	-	C	C	rs144320687		TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr17:61744386_61744387insC	uc002jbg.2	+	6	787_788	c.468_469insC	c.(466-471)CAGCCCfs	p.Q156fs	MAP3K3_uc002jbe.2_Frame_Shift_Ins_p.Q187fs|MAP3K3_uc002jbf.2_Frame_Shift_Ins_p.Q187fs|MAP3K3_uc002jbh.2_Frame_Shift_Ins_p.Q187fs|MAP3K3_uc010wpo.1_Frame_Shift_Ins_p.Q71fs|MAP3K3_uc010wpp.1_Frame_Shift_Ins_p.Q156fs	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	156_157					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						CTATCTACCAGCCCCCCGAGCC	0.490													45	71	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	44225123	44225123	+	IGR	DEL	G	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr19:44225123delG								IRGC (956 upstream) : C19orf61 (10178 downstream)																							TGGAGGGGTAGGGGGTGGCAG	0.622													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	16409482	16409483	+	IGR	INS	-	C	C	rs149678427	by1000genomes	TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr2:16409482_16409483insC								MYCN (322354 upstream) : FAM49A (324418 downstream)																							TCCTTCCTGGGaccccgccccg	0.411													7	7	---	---	---	---					
FRG1B	284802	broad.mit.edu	37	20	29624003	29624004	+	5'Flank	INS	-	AA	AA			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr20:29624003_29624004insAA	uc010ztl.1	+						FRG1B_uc002wvm.1_Intron|FRG1B_uc010ztj.1_Intron|FRG1B_uc010gdr.1_Intron|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TAGCAAATGTCAAATTTATTTT	0.312													3	4	---	---	---	---					
PRIC285	85441	broad.mit.edu	37	20	62198499	62198499	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr20:62198499delC	uc002yfm.2	-	7	3104	c.2212delG	c.(2212-2214)GTCfs	p.V738fs	PRIC285_uc002yfl.1_Frame_Shift_Del_p.V169fs	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	738					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			TCGTGGAAGACCAGGCGGCTC	0.667													38	68	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20149695	20149697	+	IGR	DEL	CAC	-	-	rs71682985		TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr22:20149695_20149697delCAC								ZDHHC8 (14166 upstream) : LOC150197 (44158 downstream)																							ccaccaccatcaccaccaccacc	0.000													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	129475677	129475678	+	IGR	DEL	GT	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr4:129475677_129475678delGT								PGRMC2 (266729 upstream) : PHF17 (255101 downstream)																							gtatgcatgcgtgtgtgtgtgt	0.327													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	139233976	139233978	+	IGR	DEL	CTC	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr4:139233976_139233978delCTC								SLC7A11 (70473 upstream) : CCRN4L (702965 downstream)																							ctgcccctttctcctcctcctcc	0.099													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	75212115	75212120	+	IGR	DEL	TCCCCT	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr5:75212115_75212120delTCCCCT								POC5 (198802 upstream) : SV2C (167185 downstream)																							ctcctcctcctccccttccccttccc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	110284248	110284250	+	IGR	DEL	TAT	-	-	rs148989974		TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr5:110284248_110284250delTAT								SLC25A46 (185766 upstream) : TSLP (121528 downstream)																							TCTTGCTCTCTATTTTTATGTTT	0.389													6	11	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	440293	440293	+	IGR	DEL	C	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr6:440293delC								IRF4 (28851 upstream) : EXOC2 (44846 downstream)																							atcccttcctccccgctccct	0.254													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	63176484	63176484	+	IGR	DEL	G	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:63176484delG								LOC100287704 (364333 upstream) : ZNF727 (329337 downstream)																							TGGAAGGTAAGGGCCAGTCAT	0.363													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	106022727	106022729	+	IGR	DEL	GAG	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:106022727_106022729delGAG								NAMPT (97089 upstream) : FLJ36031 (276421 downstream)																							ggaggaggaagaggaggaggagg	0.236													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	155119287	155119287	+	IGR	DEL	C	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr7:155119287delC								INSIG1 (17345 upstream) : EN2 (131537 downstream)																							CCCCCTCTCTCccccaaccct	0.269													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	50765657	50765658	+	IGR	DEL	AG	-	-			TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr8:50765657_50765658delAG								C8orf22 (777016 upstream) : SNTG1 (56691 downstream)																							ggagagagacagagagagagag	0.000													2	4	---	---	---	---					
FAM83H	286077	broad.mit.edu	37	8	144807177	144807179	+	Splice_Site	DEL	CCT	-	-	rs142429137	by1000genomes	TCGA-EL-A3MX-01A-11D-A21A-08	TCGA-EL-A3MX-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	f2442442-d6ab-45c6-8fb7-783736a7d048	9e7e34b0-dab7-4517-b500-18ced11ea4c4	g.chr8:144807177_144807179delCCT	uc003yzk.2	-	7	4513	c.4444_splice	c.e7-1		FAM83H_uc010mfk.1_Intron	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H						biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CTCCCCCCCCCCTGCCCCACCCA	0.665													3	3	---	---	---	---					
