Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
VCAM1	7412	broad.mit.edu	37	1	101198093	101198093	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr1:101198093C>A	uc001dti.2	+	7	1765	c.1645C>A	c.(1645-1647)CAG>AAG	p.Q549K	VCAM1_uc001dtj.2_Missense_Mutation_p.Q457K|VCAM1_uc010ouj.1_Missense_Mutation_p.Q487K	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	549	Ig-like C2-type 6.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	GTGGAGCAGGCAGCTCCCTAA	0.483000													17	21	---	---	---	---	3.52763e-06	4.07882e-06	1	1	0
RBM15	64783	broad.mit.edu	37	1	110882663	110882663	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr1:110882663C>G	uc001dzl.1	+	1	719	c.636C>G	c.(634-636)AGC>AGG	p.S212R	RBM15_uc001dzm.1_Missense_Mutation_p.S212R|uc001dzj.2_5'Flank	NM_022768	NP_073605	Q96T37	RBM15_HUMAN	RNA binding motif protein 15	212	RRM 1.				interspecies interaction between organisms	nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3		all_cancers(81;2.89e-06)|all_epithelial(167;2.96e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Breast(1374;0.0634)		BRCA - Breast invasive adenocarcinoma(282;0.000224)|Epithelial(280;0.000476)|Kidney(133;0.000539)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|all cancers(265;0.00144)|Lung(183;0.0238)|Colorectal(144;0.103)|LUSC - Lung squamous cell carcinoma(189;0.135)		GTTCTGGCAGCGGGGATGAGC	0.602000			T	MKL1	acute megakaryocytic leukemia						OREG0013656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	38	---	---	---	---	0	0	1	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654323	43654323	+	Silent	SNP	C	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr10:43654323C>A	uc001jan.2	+	3	1157	c.822C>A	c.(820-822)ATC>ATA	p.I274I	CSGALNACT2_uc001jam.1_Silent_p.I274I	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	274	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						TTATTAATATCATTGTGCCAC	0.378000													3	57	---	---	---	---	0.00909568	0.00909568	1	1	0
EIF3A	8661	broad.mit.edu	37	10	120797832	120797832	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr10:120797832G>C	uc001ldu.2	-	20	3792	c.3646C>G	c.(3646-3648)CGG>GGG	p.R1216G	EIF3A_uc010qsu.1_Missense_Mutation_p.R1182G|EIF3A_uc009xzg.1_Missense_Mutation_p.R255G	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1216	Asp-rich.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		ttctcctcccgatcttgatta	0.274000													3	82	---	---	---	---	0	0	1	0	0
TCP11L1	55346	broad.mit.edu	37	11	33087532	33087532	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr11:33087532A>G	uc001mud.2	+	8	1529	c.1129A>G	c.(1129-1131)ATT>GTT	p.I377V	TCP11L1_uc009yju.2_Missense_Mutation_p.I192V|TCP11L1_uc010rei.1_Missense_Mutation_p.I377V|TCP11L1_uc001mue.2_Missense_Mutation_p.I377V|TCP11L1_uc001muf.1_RNA	NM_018393	NP_060863	Q9NUJ3	T11L1_HUMAN	t-complex 11 (mouse) like 1	377											0						GATTGTGAAGATTTTGCTAAC	0.542000											OREG0020866	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	45	143	---	---	---	---	0	0	1	0	0
CASP5	838	broad.mit.edu	37	11	104879560	104879560	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr11:104879560G>A	uc010rva.1	-	2	187	c.155C>T	c.(154-156)ACG>ATG	p.T52M	CASP5_uc010ruz.1_Missense_Mutation_p.T65M|CASP5_uc010rvb.1_Intron|CASP5_uc010rvc.1_Intron|CASP5_uc009yxh.2_Intron|CASP5_uc010rvd.1_Intron	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	52					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		CTTTTGATCCGTATTAGGTAC	0.373000													6	66	---	---	---	---	0	0	1	0	0
FEZ1	9638	broad.mit.edu	37	11	125359608	125359608	+	Silent	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr11:125359608G>A	uc001qbx.2	-	2	218	c.66C>T	c.(64-66)GAC>GAT	p.D22D	FEZ1_uc010sbc.1_Silent_p.D22D|FEZ1_uc001qby.1_Silent_p.D22D	NM_005103	NP_005094	Q99689	FEZ1_HUMAN	zygin 1 isoform 1	22					axon guidance|cell adhesion|transport	microtubule|plasma membrane				central_nervous_system(3)|ovary(1)	4	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0934)		TCTCCTCCGGGTCCTCCGAGC	0.542000													44	71	---	---	---	---	0	0	1	0	0
ZNF609	23060	broad.mit.edu	37	15	64966384	64966384	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr15:64966384C>A	uc002ann.2	+	4	1331	c.1331C>A	c.(1330-1332)CCC>CAC	p.P444H		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	444						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						AAAAACAAACCCCTTTCAGAC	0.562000													3	74	---	---	---	---	0.004672	0.00480178	1	1	0
ZNF592	9640	broad.mit.edu	37	15	85345382	85345382	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr15:85345382G>A	uc002bld.2	+	11	3898	c.3562G>A	c.(3562-3564)GAG>AAG	p.E1188K	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	1188					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ggaggaagaggaggCGGCGGC	0.532000													7	13	---	---	---	---	0	0	1	0	0
PGAP3	93210	broad.mit.edu	37	17	37842227	37842227	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr17:37842227G>A	uc002hsj.2	-	2	270	c.227C>T	c.(226-228)ACC>ATC	p.T76I	ERBB2_uc002hsm.2_5'Flank|ERBB2_uc010cwa.2_5'Flank|PGAP3_uc010cvy.2_5'Flank|PGAP3_uc010wej.1_Missense_Mutation_p.T76I|PGAP3_uc002hsk.2_Missense_Mutation_p.T76I|PGAP3_uc010cvz.2_Missense_Mutation_p.T76I|ERBB2_uc002hsl.2_5'Flank	NM_033419	NP_219487	Q96FM1	PGAP3_HUMAN	per1-like domain containing 1 precursor	76	Lumenal (Potential).				GPI anchor biosynthetic process	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	hydrolase activity, acting on ester bonds			upper_aerodigestive_tract(1)	1						GAGCCCAACGGTGACCCACAT	0.537000													3	57	---	---	---	---	0	0	1	0	0
KRTAP3-3	85293	broad.mit.edu	37	17	39150166	39150166	+	Missense_Mutation	SNP	C	T	T	rs146610892	byFrequency	TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr17:39150166C>T	uc002hvr.1	-	1	220	c.184G>A	c.(184-186)GTG>ATG	p.V62M		NM_033185	NP_149441	Q9BYR6	KRA33_HUMAN	keratin associated protein 3-3	62						keratin filament	structural molecule activity				0		Breast(137;0.00043)				CAGGTGGGCACGCAGGGCTGA	0.632000													41	46	---	---	---	---	0	0	1	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39280114	39280114	+	Silent	SNP	T	C	C			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr17:39280114T>C	uc002hwa.2	-	1	306	c.261A>G	c.(259-261)AGA>AGG	p.R87R		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	87	15.|31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			AGCACTGGGGTCTGCAGCAGC	0.607000													5	191	---	---	---	---	0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50734133	50734133	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr18:50734133C>T	uc002lfe.1	+	11	2394	c.1807C>T	c.(1807-1809)CGC>TGC	p.R603C	DCC_uc010xdr.1_Missense_Mutation_p.R451C|DCC_uc010dpf.1_Missense_Mutation_p.R258C	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	603	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane		p.R603C(1)		skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		AGCTTATAATCGCTATGGTCC	0.353000													39	78	---	---	---	---	0	0	1	0	0
PRSSL1	400668	broad.mit.edu	37	19	687034	687034	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr19:687034T>C	uc002lpl.1	-	4	567	c.536A>G	c.(535-537)AAG>AGG	p.K179R	PRSSL1_uc010xfs.1_Missense_Mutation_p.K178R	NM_214710	NP_999875	Q6UWY2	PRS57_HUMAN	protease, serine-like 1 precursor	179	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACTCGGACCTTGGCCTCCAT	0.672000													9	29	---	---	---	---	0	0	1	0	0
GPN1	11321	broad.mit.edu	37	2	27861816	27861816	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr2:27861816C>A	uc010ymc.1	+	9	698	c.677C>A	c.(676-678)GCC>GAC	p.A226D	GPN1_uc010ezf.2_Missense_Mutation_p.A200D|GPN1_uc010yma.1_Missense_Mutation_p.A133D|GPN1_uc010ymb.1_Missense_Mutation_p.A117D|GPN1_uc010ymd.1_Missense_Mutation_p.A107D|GPN1_uc010yme.1_Missense_Mutation_p.A226D|GPN1_uc010ezg.1_Missense_Mutation_p.A107D	NM_007266	NP_009197	Q9HCN4	GPN1_HUMAN	GPN-loop GTPase 1 isoform a	212						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding				0						TTCCAAGATGCCTTGAATCAA	0.443000													5	67	---	---	---	---	0.000602214	0.000655351	1	1	0
TTN	7273	broad.mit.edu	37	2	179399157	179399157	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr2:179399157A>G	uc010zfg.1	-	307	94705	c.94481T>C	c.(94480-94482)ATG>ACG	p.M31494T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.M25189T|TTN_uc010zfi.1_Missense_Mutation_p.M25122T|TTN_uc010zfj.1_Missense_Mutation_p.M24997T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32421							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGATGCTGTCATGCGAGATTT	0.418000													43	67	---	---	---	---	0	0	1	0	0
SIRPA	140885	broad.mit.edu	37	20	1902292	1902292	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr20:1902292G>A	uc002wfq.2	+	4	1048	c.688G>A	c.(688-690)GTG>ATG	p.V230M	SIRPA_uc010zps.1_Missense_Mutation_p.V210M|SIRPA_uc002wfr.2_Missense_Mutation_p.V230M|SIRPA_uc002wfs.2_Missense_Mutation_p.V230M|SIRPA_uc002wft.2_Missense_Mutation_p.V230M	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	230	Ig-like C1-type 1.|Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		CATCTGCGAGGTGGCCCACGT	0.612000													6	96	---	---	---	---	0	0	1	0	0
SIRPA	140885	broad.mit.edu	37	20	1902301	1902301	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr20:1902301G>A	uc002wfq.2	+	4	1057	c.697G>A	c.(697-699)GTC>ATC	p.V233I	SIRPA_uc010zps.1_Missense_Mutation_p.V213I|SIRPA_uc002wfr.2_Missense_Mutation_p.V233I|SIRPA_uc002wfs.2_Missense_Mutation_p.V233I|SIRPA_uc002wft.2_Missense_Mutation_p.V233I	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	233	Ig-like C1-type 1.|Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		GGTGGCCCACGTCACCTTGCA	0.617000													6	106	---	---	---	---	0	0	1	0	0
PRKAR2A	5576	broad.mit.edu	37	3	48789079	48789079	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr3:48789079T>C	uc010hki.1	-	11	1395	c.1154A>G	c.(1153-1155)TAT>TGT	p.Y385C	PRKAR2A_uc003cux.1_Missense_Mutation_p.Y385C|PRKAR2A_uc003cuy.1_Missense_Mutation_p.Y363C	NM_004157	NP_004148	P13861	KAP2_HUMAN	cAMP-dependent protein kinase, regulatory	385	cAMP 2.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|membrane fraction	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000176)|Kidney(197;0.00246)|KIRC - Kidney renal clear cell carcinoma(197;0.00261)		CTGTTCCTCATAGTGTGAGAT	0.512000													11	20	---	---	---	---	0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97202876	97202876	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr3:97202876A>T	uc010how.1	+	10	2216	c.2173A>T	c.(2173-2175)ATT>TTT	p.I725F	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Missense_Mutation_p.I91F|EPHA6_uc003drs.3_Missense_Mutation_p.I117F|EPHA6_uc003drr.3_Missense_Mutation_p.I117F|EPHA6_uc003drt.2_Missense_Mutation_p.I117F|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	630	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TCCCTCAAGAATTCGTATTGA	0.284000													10	17	---	---	---	---	0	0	1	0	0
F2RL1	2150	broad.mit.edu	37	5	76128981	76128981	+	Silent	SNP	C	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr5:76128981C>T	uc003keo.2	+	2	724	c.549C>T	c.(547-549)CAC>CAT	p.H183H		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	183	Cytoplasmic (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CCATGGGGCACTCCAGGAAGA	0.488000													7	141	---	---	---	---	0	0	1	0	0
WWC1	23286	broad.mit.edu	37	5	167891808	167891808	+	Silent	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr5:167891808G>A	uc003lzu.2	+	21	3084	c.2991G>A	c.(2989-2991)GCG>GCA	p.A997A	WWC1_uc003lzv.2_Silent_p.A1003A|WWC1_uc011den.1_Silent_p.A1003A|WWC1_uc003lzw.2_Silent_p.A796A|WWC1_uc010jjf.1_Silent_p.A269A	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	997	Interaction with histone H3.				cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		ACCTGCAGGCGACAAGAACCT	0.612000													22	41	---	---	---	---	0	0	1	0	0
VARS	7407	broad.mit.edu	37	6	31760609	31760609	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr6:31760609G>A	uc003nxe.2	-	4	1009	c.586C>T	c.(586-588)CGG>TGG	p.R196W	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	196	GST C-terminal.				translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	TCTGGCTGCCGGACACACGTG	0.557000													3	53	---	---	---	---	0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34059809	34059809	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr6:34059809G>A	uc003oir.3	-	2	757	c.587C>T	c.(586-588)TCC>TTC	p.S196F	GRM4_uc011dsn.1_Missense_Mutation_p.S196F|GRM4_uc010jvh.2_Missense_Mutation_p.S196F|GRM4_uc010jvi.2_Intron|GRM4_uc010jvk.1_Missense_Mutation_p.S115F|GRM4_uc011dsl.1_Missense_Mutation_p.S56F|GRM4_uc003oiq.2_Missense_Mutation_p.S63F|GRM4_uc011dsm.1_Missense_Mutation_p.S27F	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	196	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	CACCACGCGGGAGAAGAAGTC	0.642000													21	73	---	---	---	---	0	0	1	0	0
C6orf138	442213	broad.mit.edu	37	6	48036187	48036187	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr6:48036187C>A	uc011dwm.1	-	1	239	c.154G>T	c.(154-156)GAC>TAC	p.D52Y	C6orf138_uc011dwn.1_Intron|C6orf138_uc003ozf.2_Missense_Mutation_p.D69Y	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	69						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						CGCTCCAGGTCGCCCTCGGGC	0.652000													3	37	---	---	---	---	0.004672	0.00480178	1	1	0
ZNF92	168374	broad.mit.edu	37	7	64863789	64863789	+	Silent	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr7:64863789G>A	uc003ttz.2	+	4	905	c.762G>A	c.(760-762)GAG>GAA	p.E254E	ZNF92_uc003tua.2_Silent_p.E185E|ZNF92_uc010kzu.2_Silent_p.E222E|ZNF92_uc003tub.2_Silent_p.E178E	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	254						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				ATACTGGAGAGAAACCCTACA	0.353000													3	39	---	---	---	---	0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685167	100685167	+	Silent	SNP	C	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr7:100685167C>T	uc003uxp.1	+	3	10523	c.10470C>T	c.(10468-10470)ACC>ACT	p.T3490T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3490	Extracellular (Potential).|Ser-rich.|57.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CACCTGTGACCACTTCTTCTC	0.488000													143	202	---	---	---	---	0	0	1	0	0
KANK1	23189	broad.mit.edu	37	9	732477	732477	+	Silent	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr9:732477G>A	uc003zgl.1	+	10	3754	c.3105G>A	c.(3103-3105)GAG>GAA	p.E1035E	KANK1_uc003zgm.2_3'UTR|KANK1_uc003zgn.1_Silent_p.E1035E|KANK1_uc003zgs.1_Silent_p.E877E|KANK1_uc010mgx.1_5'UTR|KANK1_uc010mgy.1_5'UTR|KANK1_uc003zgt.1_5'Flank	NM_015158	NP_055973	Q14678	KANK1_HUMAN	KN motif and ankyrin repeat domains 1 isoform a	1035					negative regulation of actin filament polymerization	cytoplasm				ovary(2)|central_nervous_system(1)|pancreas(1)	4		Lung NSC(10;9.84e-12)|all_lung(10;1.02e-11)|Breast(48;0.128)		Epithelial(6;0.000153)|OV - Ovarian serous cystadenocarcinoma(1;0.000358)|Lung(218;0.0222)		TTGAAGAAGAGGAGGAGGAGG	0.468000													6	121	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	66454765	66454765	+	RNA	SNP	C	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr9:66454765C>T	uc010mng.1	-	2		c.532G>A			uc004aec.2_5'Flank					Homo sapiens cDNA, FLJ98602.																		GAGCTCGAGGCGGATAGTCCC	0.517000													3	5	---	---	---	---	0	0	1	0	0
ST6GALNAC6	30815	broad.mit.edu	37	9	130658585	130658585	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr9:130658585C>T	uc004bso.1	-	3	172	c.53G>A	c.(52-54)GGG>GAG	p.G18E	ST6GALNAC6_uc004bsn.1_5'UTR|ST6GALNAC6_uc011man.1_5'UTR|ST6GALNAC6_uc004bsp.1_Missense_Mutation_p.G18E|ST6GALNAC6_uc004bsq.1_5'UTR|ST6GALNAC6_uc004bsr.2_5'UTR|ST6GALNAC6_uc010mxp.1_RNA	NM_013443	NP_038471	Q969X2	SIA7F_HUMAN	sialytransferase 7F	18	Cytoplasmic (Potential).				protein glycosylation	integral to Golgi membrane|plasma membrane					0						TGCAGGTGGCCCTGGGGGCAG	0.552000													42	67	---	---	---	---	0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137655578	137655578	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr9:137655578G>T	uc004cfe.2	+	20	2411	c.2029G>T	c.(2029-2031)GAG>TAG	p.E677*		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	677	Triple-helical region.			E -> Q (in Ref. 4; AA sequence).|E -> K (in Ref. 1; BAA14323).	axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCTGCCTGGGGAGCCCGTAAG	0.592000													4	81	---	---	---	---	1.23904e-05	1.38923e-05	1	1	0
Unknown	0	broad.mit.edu	37	MT	3090	3090	+	5'Flank	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chrM:3090G>A	uc004coq.3	-						uc004cos.3_RNA|uc011mfh.1_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		CGGAGTAATCCAGGTCGGTTT	0.458000													43	92	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	3901	3901	+	RNA	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chrM:3901G>A	uc004cos.3	+	2		c.2194G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		GAACCCCCTTCGACCTTGCCG	0.488000													7	126	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	15003	15003	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chrM:15003G>A	uc004coy.2	+	1	243	c.168G>A	c.(166-168)TGG>TGA	p.W56*	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		TCACGCCAATGGCGCCTCAAT	0.473000													65	48	---	---	---	---	0	0	1	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7980912	7980914	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr1:7980912_7980914delCTT	uc001aot.2	-	8	877_879	c.749_751delAAG	c.(748-753)GAAGGA>GGA	p.E250del		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	250	Cytoplasmic (Potential).|Interaction with LRR-1.		E -> G (in a colorectal cancer sample; somatic mutation).		induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity	p.E250G(1)		large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		TCACATCCTCCTTCTTCTTCTTC	0.379													7	132	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529341	42529341	+	IGR	DEL	A	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr10:42529341delA								None (None upstream) : LOC441666 (297974 downstream)																							agttgaatacacacaacacaa	0.000													8	406	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	81788176	81788176	+	IGR	DEL	A	-	-	rs35380147		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr10:81788176delA								MBL1P (77393 upstream) : LOC219347 (17815 downstream)																							AGCTGTGCATATCTGGACTCC	0.443													7	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	81885733	81885733	+	IGR	DEL	A	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr10:81885733delA								C10orf57 (33427 upstream) : PLAC9 (6525 downstream)																							GAAGAGGGGCAAAAAAAAGAA	0.408													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125015155	125015156	+	IGR	INS	-	ATT	ATT			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr10:125015155_125015156insATT								BUB3 (90269 upstream) : GPR26 (410715 downstream)																							ccaccaccaccaccatcaccat	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	9681924	9681924	+	IGR	DEL	A	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr11:9681924delA								WEE1 (70613 upstream) : SWAP70 (3704 downstream)																							acttcgtctcaaaaaaaaaaa	0.209													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	122860408	122860409	+	IGR	INS	-	TGATGA	TGATGA	rs143836978	by1000genomes	TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr11:122860408_122860409insTGATGA								BSX (8029 upstream) : LOC341056 (27865 downstream)																							gatgatggtggtggtggtgatg	0.054													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	79502931	79502931	+	IGR	DEL	T	-	-	rs139160726	by1000genomes	TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr13:79502931delT								RNF219 (268231 upstream) : RBM26 (391169 downstream)																							GTCCCCTGCCTcccccccccc	0.453													3	6	---	---	---	---					
POLE2	5427	broad.mit.edu	37	14	50131361	50131366	+	In_Frame_Del	DEL	CATGCC	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr14:50131361_50131366delCATGCC	uc001wwu.2	-	9	674_679	c.660_665delGGCATG	c.(658-666)GAGGCATGC>GAC	p.220_222EAC>D	SDCCAG1_uc010anj.1_Intron|POLE2_uc010ann.2_5'UTR|POLE2_uc001wwv.2_RNA|POLE2_uc010ano.2_5'UTR	NM_002692	NP_002683	P56282	DPOE2_HUMAN	DNA-directed DNA polymerase epsilon 2	220_222					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity			ovary(1)|skin(1)	2	all_epithelial(31;0.0021)|Breast(41;0.0124)					TAAGACAAAGCATGCCTCTGTGTATA	0.350													15	106	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	79033151	79033152	+	IGR	DEL	AC	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr15:79033151_79033152delAC								CHRNB4 (80277 upstream) : ADAMTS7 (18394 downstream)																							GGGTTGGGGGACACACACACAC	0.579													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46395016	46395018	+	IGR	DEL	GAT	-	-	rs28891222		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr16:46395016_46395018delGAT								None (None upstream) : ANKRD26P1 (108231 downstream)																							gatgaaattcgatgatgattcca	0.000													10	385	---	---	---	---					
ARRDC5	645432	broad.mit.edu	37	19	4903031	4903032	+	5'Flank	INS	-	TCACTGGTTCTTTT	TCACTGGTTCTTTT	rs144459964	by1000genomes	TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr19:4903031_4903032insTCACTGGTTCTTTT	uc002mbm.2	-							NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5						signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		ACCTGTAGTCCTCACTGGttct	0.302													2	4	---	---	---	---					
MYO9B	4650	broad.mit.edu	37	19	17294679	17294680	+	Splice_Site	INS	-	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr19:17294679_17294680insA	uc010eak.2	+	16	2525	c.2373_splice	c.e16+2	p.K791_splice	MYO9B_uc002nfi.2_Splice_Site_p.K791_splice|MYO9B_uc002nfj.1_Splice_Site_p.K791_splice	NM_004145	NP_004136	Q13459	MYO9B_HUMAN	myosin IXB isoform 1						actin filament-based movement	cell cortex|cytosol|filamentous actin|myosin complex|perinuclear region of cytoplasm	actin binding|ADP binding|ATP binding|ATPase activity|calmodulin binding|metal ion binding|microfilament motor activity|Rho GTPase activator activity			breast(1)	1						ATTCCAAAGGTAAAAAAAAAAA	0.411													3	3	---	---	---	---					
ALMS1	7840	broad.mit.edu	37	2	73613087	73613089	+	In_Frame_Del	DEL	GCG	-	-	rs13009609		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr2:73613087_73613089delGCG	uc002sje.1	+	2	205_207	c.94_96delGCG	c.(94-96)GCGdel	p.A36del	ALMS1_uc002sjf.1_In_Frame_Del_p.A35del	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	35	Glu-rich.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ggaggCTGCAGCGGCGGCGGCGG	0.512													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92256524	92256524	+	IGR	DEL	A	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr2:92256524delA								FKSG73 (126030 upstream) : None (None downstream)																							TCTGCCATTCAGGTGGAACAC	0.433													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10701571	10701572	+	IGR	INS	-	T	T	rs62218597		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr21:10701571_10701572insT								None (None upstream) : TPTE (205171 downstream)																							tggaaagagtcttttgtagtat	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10712756	10712757	+	IGR	INS	-	A	A			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr21:10712756_10712757insA								None (None upstream) : TPTE (193986 downstream)																							ccacactgctcatcaaaagaaa	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	11175282	11175283	+	IGR	INS	-	G	G	rs56073885		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr21:11175282_11175283insG								BAGE (76345 upstream) : None (None downstream)																							GATCATCTGTAGTGTACGGTGG	0.391													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	126679395	126679397	+	IGR	DEL	GCA	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr3:126679395_126679397delGCA								CHCHD6 (151 upstream) : PLXNA1 (28105 downstream)																							TAATTACATTgcagcagcagcag	0.537													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	1516969	1516971	+	IGR	DEL	GGA	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr4:1516969_1516971delGGA								CRIPAK (127187 upstream) : FAM53A (124638 downstream)																							tggtggtggtggagatgatggtg	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49645179	49645180	+	IGR	INS	-	G	G			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr4:49645179_49645180insG								CWH43 (581086 upstream) : None (None downstream)																							tggaatcatccgagtggaatgg	0.000													6	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	113709701	113709701	+	IGR	DEL	C	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr4:113709701delC								LARP7 (130960 upstream) : ANK2 (29538 downstream)																							GGGCCAACAGCCTTCTTCTCT	0.562													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	190201125	190201126	+	IGR	INS	-	CT	CT	rs142468040		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr4:190201125_190201126insCT								None (None upstream) : FRG1 (660848 downstream)																							agtgtctggaactctgcagggg	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	3660258	3660259	+	IGR	INS	-	C	C	rs112300706		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr5:3660258_3660259insC								IRX1 (58742 upstream) : None (None downstream)																							ATGATGACCTGCCCGTTATGAC	0.431													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	165097024	165097025	+	IGR	DEL	AC	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr5:165097024_165097025delAC								None (None upstream) : None (None downstream)																							cccacccccgacacacacacag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	180708776	180708777	+	IGR	INS	-	G	G	rs140221514		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr5:180708776_180708777insG								TRIM52 (20657 upstream) : None (None downstream)																							gggcggtaggagggggctggag	0.144													7	16	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	47996414	47996416	+	IGR	DEL	ATG	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr7:47996414_47996416delATG								PKD1L1 (8377 upstream) : HUS1 (6567 downstream)																							TGATAACCAAatgatgatgatga	0.202													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61825815	61825815	+	IGR	DEL	C	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr7:61825815delC								None (None upstream) : LOC643955 (925857 downstream)																							tgtctgacagctttgaagaga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	66454829	66454829	+	RNA	DEL	T	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chr9:66454829delT	uc010mng.1	-	2		c.468delA			uc004aec.2_5'Flank					Homo sapiens cDNA, FLJ98602.																		GGATTCCACGTTTCTTTGCCC	0.547													6	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11032	11032	+	RNA	DEL	A	-	-			TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chrM:11032delA	uc004cov.3	+	1		c.455delA			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		CCACTATCACGAAAAAAACTC	0.423													62	74	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	9373793	9373793	+	5'Flank	DEL	C	-	-	rs112728045		TCGA-EL-A3TB-01A-11D-A22D-08	TCGA-EL-A3TB-11A-11D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	0567d3e6-6278-4d0a-81ae-c084d73c6dd3	9dcf95bf-fb65-4589-90cb-302da798f00b	g.chrX:9373793delC	uc004csk.2	-											DQ576926																		TGCACACTGACCACATCGGGA	0.488													4	8	---	---	---	---					
