Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FLG	2312	broad.mit.edu	37	1	152275656	152275656	+	Silent	SNP	G	A	A	rs147335121		TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr1:152275656G>A	uc001ezu.1	-	3	11742	c.11706C>T	c.(11704-11706)CCC>CCT	p.P3902P		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3902	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGAGGATCCGGGGTGTCTGG	0.517000									Ichthyosis				5	95	---	---	---	---	0	0	0.014758	0	0
DCST2	127579	broad.mit.edu	37	1	155004126	155004126	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr1:155004126C>T	uc001fgm.2	-	4	743	c.663G>A	c.(661-663)ATG>ATA	p.M221I	DCST2_uc009wpb.2_RNA|DCST1_uc010per.1_5'Flank|DCST1_uc001fgn.1_5'Flank|DCST1_uc010pes.1_5'Flank	NM_144622	NP_653223	Q5T1A1	DCST2_HUMAN	DC-STAMP domain containing 2	221	Cytoplasmic (Potential).					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GTATGACCATCATGCAGCTGT	0.567000													10	112	---	---	---	---	0	0	0.069234	0	0
PFKP	5214	broad.mit.edu	37	10	3177999	3177999	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr10:3177999G>A	uc001igp.2	+	21	2230	c.2194G>A	c.(2194-2196)GTG>ATG	p.V732M	PFKP_uc001igq.2_Missense_Mutation_p.V724M|PFKP_uc009xhr.2_Missense_Mutation_p.V694M|PFKP_uc009xht.2_Missense_Mutation_p.V470M|PFKP_uc009xhu.2_Missense_Mutation_p.V238M	NM_002627	NP_002618	Q01813	K6PP_HUMAN	phosphofructokinase, platelet	732					glycolysis	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|metal ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3				GBM - Glioblastoma multiforme(1;0.000975)|all cancers(11;0.00351)|Epithelial(11;0.142)		TTTTCAACCTGTGGCAGAGCT	0.398000													4	68	---	---	---	---	0	0	0.021553	0	0
BMS1	9790	broad.mit.edu	37	10	43318593	43318593	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr10:43318593G>A	uc001jaj.2	+	20	3518	c.3160G>A	c.(3160-3162)GCC>ACC	p.A1054T		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1054					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						CTTGGAAGTGGCCAAATTTGA	0.423000													4	137	---	---	---	---	0	0	0.029380	0	0
TET1	80312	broad.mit.edu	37	10	70411612	70411612	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr10:70411612T>C	uc001jok.3	+	5	4791	c.4286T>C	c.(4285-4287)ATA>ACA	p.I1429T		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1429					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GATCGAGTTATACAAAAAGAC	0.428000													7	131	---	---	---	---	0	0	0.047766	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													7	58	---	---	---	---	0	0	0.029380	0	0
ATP2A2	488	broad.mit.edu	37	12	110765417	110765417	+	Silent	SNP	C	T	T	rs143310856	by1000genomes	TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr12:110765417C>T	uc001tqk.3	+	8	1253	c.690C>T	c.(688-690)ACC>ACT	p.T230T	ATP2A2_uc001tql.3_Silent_p.T230T|ATP2A2_uc010sxy.1_Silent_p.T203T	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	230	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						GAGTTAACACCGAAATTGGCA	0.463000													7	251	---	---	---	---	0	0	0.029380	0	0
FRY	10129	broad.mit.edu	37	13	32835817	32835817	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr13:32835817G>A	uc001utx.2	+	52	7977	c.7481G>A	c.(7480-7482)TGT>TAT	p.C2494Y	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_Missense_Mutation_p.C49Y|FRY_uc001utz.2_Missense_Mutation_p.C19Y|FRY_uc010tdx.1_5'Flank	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2494					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CTGGATAAGTGTGATATGCAG	0.498000													28	40	---	---	---	---	0	0	0.034045	0	0
ABCA3	21	broad.mit.edu	37	16	2331127	2331127	+	Silent	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr16:2331127G>A	uc002cpy.1	-	28	4972	c.4260C>T	c.(4258-4260)GCC>GCT	p.A1420A	ABCA3_uc010bsk.1_Silent_p.A1362A	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	1420	ABC transporter 2.|ATP 2 (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TGGTCTTCCCGGCTCCATTGA	0.617000													4	100	---	---	---	---	0	0	0.014758	0	0
GLP2R	9340	broad.mit.edu	37	17	9763385	9763385	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr17:9763385C>T	uc002gmd.1	+	7	892	c.892C>T	c.(892-894)CGG>TGG	p.R298W		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	298	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TCCTGAGAGGCGGCTGTGGCC	0.542000													10	23	---	---	---	---	0	0	0.069234	0	0
EZH1	2145	broad.mit.edu	37	17	40857116	40857116	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr17:40857116T>A	uc002iaz.2	-	17	2070	c.1925A>T	c.(1924-1926)TAC>TTC	p.Y642F	EZH1_uc002iba.2_Missense_Mutation_p.Y633F|EZH1_uc010wgt.1_Missense_Mutation_p.Y572F|EZH1_uc010wgu.1_Missense_Mutation_p.Y648F|EZH1_uc010wgv.1_Missense_Mutation_p.Y602F|EZH1_uc010wgw.1_Missense_Mutation_p.Y503F|EZH1_uc010cyp.2_Missense_Mutation_p.Y543F|EZH1_uc010cyq.2_Missense_Mutation_p.Y559F|EZH1_uc010cyo.1_Missense_Mutation_p.Y305F	NM_001991	NP_001982	Q92800	EZH1_HUMAN	enhancer of zeste homolog 1	642	SET.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex	chromatin binding|DNA binding			ovary(3)	3		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0784)		CTCACCACAGTATTCAGAAAT	0.507000													26	64	---	---	---	---	0	0	0.083992	0	0
THOC1	9984	broad.mit.edu	37	18	265318	265318	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr18:265318A>C	uc002kkj.3	-	3	214	c.174T>G	c.(172-174)ATT>ATG	p.I58M	THOC1_uc002kkk.3_RNA|THOC1_uc002kkl.2_Missense_Mutation_p.I58M	NM_005131	NP_005122	Q96FV9	THOC1_HUMAN	THO complex 1	58					apoptosis|intronless viral mRNA export from host nucleus|mRNA processing|regulation of transcription elongation, DNA-dependent|RNA splicing|signal transduction|transcription, DNA-dependent	cytoplasm|nuclear matrix|nuclear speck|THO complex part of transcription export complex	DNA binding|protein binding|RNA binding			ovary(1)	1		all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412)				CTTCTTCTAGAATACCTCTGA	0.269000													7	14	---	---	---	---	0	0	0.038147	0	0
ZNF234	10780	broad.mit.edu	37	19	44661248	44661248	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr19:44661248A>G	uc002oym.2	+	6	1386	c.1079A>G	c.(1078-1080)CAG>CGG	p.Q360R	ZNF234_uc002oyl.3_Missense_Mutation_p.Q360R	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	360	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TCACAATTTCAGGCCCATCGG	0.443000													3	39	---	---	---	---	0	0	0.009096	0	0
APOB	338	broad.mit.edu	37	2	21231425	21231425	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr2:21231425T>A	uc002red.2	-	26	8443	c.8315A>T	c.(8314-8316)GAT>GTT	p.D2772V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2772					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGCATTTGCATCTAATGTGAA	0.428000													10	174	---	---	---	---	0	0	0.080935	0	0
YSK4	80122	broad.mit.edu	37	2	135744495	135744495	+	Missense_Mutation	SNP	C	G	G			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr2:135744495C>G	uc002tue.1	-	7	1978	c.1947G>C	c.(1945-1947)ATG>ATC	p.M649I	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.M536I|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.M377I|YSK4_uc002tui.3_Missense_Mutation_p.M666I	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	649							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTTCTTTGAACATATCACTAT	0.393000													3	221	---	---	---	---	0	0	0.009096	0	0
CD28	940	broad.mit.edu	37	2	204594418	204594418	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr2:204594418T>C	uc002vah.3	+	3	679	c.457T>C	c.(457-459)TTT>CTT	p.F153L	CD28_uc002vag.1_RNA|CD28_uc010zio.1_RNA|CD28_uc010ftx.2_Missense_Mutation_p.F34L|CD28_uc002vaj.3_Intron	NM_006139	NP_006130	P10747	CD28_HUMAN	CD28 antigen precursor	153	Helical; (Potential).				cell surface receptor linked signaling pathway|cytokine biosynthetic process|humoral immune response|positive regulation of anti-apoptosis|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation of translation|positive regulation of viral genome replication|regulation of defense response to virus by virus|regulatory T cell differentiation|T cell costimulation|viral reproduction	cytosol|external side of plasma membrane|integral to plasma membrane	coreceptor activity|protease binding|SH3/SH2 adaptor activity				0						TTCTAAGCCCTTTTGGGTGCT	0.443000													3	186	---	---	---	---	0	0	0.004672	0	0
KIF1A	547	broad.mit.edu	37	2	241724413	241724413	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr2:241724413G>A	uc002vzy.2	-	7	859	c.713C>T	c.(712-714)ACG>ATG	p.T238M	KIF1A_uc010fzk.2_Missense_Mutation_p.T238M|KIF1A_uc002vzz.1_Missense_Mutation_p.T238M	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	238	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CACCTTCTCCGTGGTGATATT	0.612000													4	165	---	---	---	---	0	0	0.009096	0	0
TM9SF4	9777	broad.mit.edu	37	20	30745657	30745657	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr20:30745657G>A	uc002wxj.2	+	14	1625	c.1390G>A	c.(1390-1392)GTC>ATC	p.V464I	TM9SF4_uc010zts.1_Missense_Mutation_p.V371I|TM9SF4_uc002wxk.2_Missense_Mutation_p.V447I|TM9SF4_uc010gdz.2_Missense_Mutation_p.V343I	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	464	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCTGCCCCTCGTCTACTTGGG	0.602000													67	132	---	---	---	---	0	0	0.048971	0	0
PARD6B	84612	broad.mit.edu	37	20	49366339	49366339	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr20:49366339A>T	uc002xvo.2	+	3	676	c.433A>T	c.(433-435)ATT>TTT	p.I145F		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	145	Pseudo-CRIB.|Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						TGTGTCTTCTATTATAGACGT	0.438000													27	46	---	---	---	---	0	0	0.099896	0	0
GRIP2	80852	broad.mit.edu	37	3	14558718	14558718	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr3:14558718A>G	uc011avi.1	-	12	1454	c.1454T>C	c.(1453-1455)TTG>TCG	p.L485S	GRIP2_uc011avh.1_Missense_Mutation_p.L16S	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	387					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						AGTTGAAGACAAGGCTGGGGA	0.612000													4	52	---	---	---	---	0	0	0.009096	0	0
EPHB1	2047	broad.mit.edu	37	3	134960104	134960104	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr3:134960104G>A	uc003eqt.2	+	13	2681	c.2461G>A	c.(2461-2463)GGA>AGA	p.G821R	EPHB1_uc003equ.2_Missense_Mutation_p.G382R	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	821	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CATGTCATTTGGAGAGAGACC	0.517000													112	207	---	---	---	---	0	0	0.048971	0	0
SMARCA5	8467	broad.mit.edu	37	4	144466691	144466691	+	Silent	SNP	A	G	G			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr4:144466691A>G	uc003ijg.2	+	18	2814	c.2352A>G	c.(2350-2352)TTA>TTG	p.L784L		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	784					CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					TATTTGAATTACTGGAAAAAG	0.338000													3	68	---	---	---	---	0	0	0.009096	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283609	33283609	+	Missense_Mutation	SNP	C	T	T	rs147840428	by1000genomes	TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr6:33283609C>T	uc003oeb.2	-	2	1237	c.1085G>A	c.(1084-1086)CGT>CAT	p.R362H	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.R362H	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	362					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACTCAGGGTACGGACATCACT	0.577000													4	126	---	---	---	---	0	0	0.009096	0	0
RIMS1	22999	broad.mit.edu	37	6	72968798	72968798	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr6:72968798T>G	uc003pga.2	+	18	3114	c.3037T>G	c.(3037-3039)TTA>GTA	p.L1013V	RIMS1_uc011dyb.1_Missense_Mutation_p.L638V|RIMS1_uc003pgc.2_Missense_Mutation_p.L639V|RIMS1_uc010kaq.2_Missense_Mutation_p.L486V|RIMS1_uc011dyc.1_Missense_Mutation_p.L487V|RIMS1_uc010kar.2_Missense_Mutation_p.L406V|RIMS1_uc011dyd.1_Missense_Mutation_p.L472V|RIMS1_uc003pgf.2_Missense_Mutation_p.L229V|RIMS1_uc003pgg.2_Missense_Mutation_p.L230V|RIMS1_uc003pgi.2_Missense_Mutation_p.L229V|RIMS1_uc003pgh.2_Missense_Mutation_p.L229V|RIMS1_uc003pgd.2_Missense_Mutation_p.L230V|RIMS1_uc003pge.2_Missense_Mutation_p.L230V|RIMS1_uc011dye.1_Translation_Start_Site|RIMS1_uc011dyf.1_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.L639V|RIMS1_uc010kas.1_Missense_Mutation_p.L472V	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	1013					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TAGTCAGTATTTATCAGAACA	0.363000													20	37	---	---	---	---	0	0	0.043863	0	0
MTHFD1L	25902	broad.mit.edu	37	6	151239804	151239804	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr6:151239804G>C	uc003qob.2	+	9	1252	c.984G>C	c.(982-984)CAG>CAC	p.Q328H	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Missense_Mutation_p.Q329H|MTHFD1L_uc003qoc.2_Missense_Mutation_p.Q276H	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	328	Methylenetetrahydrofolate dehydrogenase and cyclohydrolase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		TGCGAATTCAGGTTTGTTCAA	0.403000													4	114	---	---	---	---	0	0	0.009096	0	0
PLG	5340	broad.mit.edu	37	6	161134119	161134119	+	Missense_Mutation	SNP	A	C	C			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr6:161134119A>C	uc003qtm.3	+	5	572	c.509A>C	c.(508-510)GAA>GCA	p.E170A		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	170	Kringle 1.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ACTGATCCAGAAAAGAGATAT	0.463000													5	197	---	---	---	---	0	0	0.021553	0	0
SPDYE7P	441251	broad.mit.edu	37	7	72339497	72339497	+	RNA	SNP	T	C	C	rs390732	by1000genomes	TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr7:72339497T>C	uc010lal.1	-	1		c.159A>G				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						TCCTCAGATTTGTCCCACCAC	0.582000													3	58	---	---	---	---	0	0	0.004672	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163401	163401	+	RNA	SNP	G	C	C			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr8:163401G>C	uc010lra.2	-	4		c.732C>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TCTGGTGCTTGTTGGCTTTAA	0.463000													3	25	---	---	---	---	0	0	0.004672	0	0
CXorf61	203413	broad.mit.edu	37	X	115592946	115592946	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chrX:115592946C>T	uc004eqj.1	-	2	424	c.304G>A	c.(304-306)GGT>AGT	p.G102S		NM_001017978	NP_001017978	Q5H943	KKLC1_HUMAN	chromosome X open reading frame 61	102	Extracellular (Potential).					integral to membrane|plasma membrane					0						CCTCTGAAACCCTTGCTAAGT	0.423000													4	190	---	---	---	---	0	0	0.009096	0	0
CD40LG	959	broad.mit.edu	37	X	135741330	135741330	+	Missense_Mutation	SNP	G	A	A	rs11575982	byFrequency	TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chrX:135741330G>A	uc004faa.2	+	5	614	c.542G>A	c.(541-543)CGG>CAG	p.R181Q	CD40LG_uc010nsd.2_Missense_Mutation_p.R160Q	NM_000074	NP_000065	P29965	CD40L_HUMAN	CD40 ligand	181	Extracellular (Potential).				anti-apoptosis|B cell proliferation|inflammatory response|isotype switching|leukocyte cell-cell adhesion|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of interleukin-12 production	extracellular space|integral to plasma membrane|soluble fraction	CD40 receptor binding|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)				Atorvastatin(DB01076)	TGTTCCAATCGGGAAGCTTCG	0.463000									Immune_Deficiency_with_Hyper-IgM				166	306	---	---	---	---	0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	1	13123163	13123163	+	IGR	DEL	A	-	-			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr1:13123163delA								PRAMEF5 (5412 upstream) : LOC440563 (59798 downstream)																							agactccatcaaaaaaaaaaa	0.234													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	19340851	19340852	+	IGR	DEL	AA	-	-	rs12781021		TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr10:19340851_19340852delAA								ARL5B (373911 upstream) : PLXDC2 (764520 downstream)																							actccgtctcaaaaaaaaaaaa	0.144													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134956999	134957000	+	IGR	INS	-	T	T	rs35462802		TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr10:134956999_134957000insT								GPR123 (11821 upstream) : KNDC1 (16971 downstream)																							CACACCTCGTCTTTTTTTTTTT	0.480													2	4	---	---	---	---					
ARID2	196528	broad.mit.edu	37	12	46244083	46244084	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr12:46244083_46244084insA	uc001ros.1	+	15	2177_2178	c.2177_2178insA	c.(2176-2178)ACAfs	p.T726fs	ARID2_uc001ror.2_Frame_Shift_Ins_p.T726fs|ARID2_uc009zkg.1_Frame_Shift_Ins_p.T182fs|ARID2_uc009zkh.1_Frame_Shift_Ins_p.T353fs|ARID2_uc001rou.1_Frame_Shift_Ins_p.T60fs	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	726					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ATACCCCAGACAGGAGTTCCTG	0.441													45	105	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	31712813	31712813	+	IGR	DEL	T	-	-			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr15:31712813delT								KLF13 (42712 upstream) : OTUD7A (62517 downstream)																							ACCCTACAGCTTTTACCTTCA	0.433													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	88620072	88620072	+	IGR	DEL	A	-	-			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr16:88620072delA								ZFPM1 (18499 upstream) : ZC3H18 (16717 downstream)																							ccatccccccaaaaaaaaaaa	0.179													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	3131449	3131450	+	IGR	INS	-	C	C	rs10164389	by1000genomes	TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chr19:3131449_3131450insC								GNA11 (9997 upstream) : GNA15 (4741 downstream)																							aaaaaaacaaaaaaaaaaacac	0.337													2	4	---	---	---	---					
MXRA5	25878	broad.mit.edu	37	X	3241422	3241422	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EM-A2OV-01A-11D-A202-08	TCGA-EM-A2OV-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	2dfe70fd-2650-49c0-b6eb-67df585d063b	f1f40ef8-e5bc-440d-915f-048bb283a01c	g.chrX:3241422delT	uc004crg.3	-	5	2461	c.2304delA	c.(2302-2304)AGAfs	p.R768fs		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	768						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TTATCCTTCGTCTAGATTCAA	0.448													8	145	---	---	---	---					
