Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
IL23R	149233	broad.mit.edu	37	1	67705965	67705965	+	Splice_Site	SNP	G	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr1:67705965G>A	uc001ddo.2	+	9	1233	c.1148_splice	c.e9+1	p.G383_splice	IL23R_uc009waz.2_Splice_Site_p.G180_splice|IL23R_uc001ddp.2_Intron|IL23R_uc010opi.1_Intron|IL23R_uc010opj.1_Intron|IL23R_uc010opk.1_Intron|IL23R_uc010opl.1_Intron|IL23R_uc010opm.1_Splice_Site|IL23R_uc001ddq.2_Splice_Site_p.G129_splice|IL23R_uc010opn.1_Splice_Site_p.G228_splice|IL23R_uc001ddr.2_Intron|IL23R_uc010opo.1_Splice_Site_p.G242_splice|IL23R_uc010opp.1_Intron|IL23R_uc010opq.1_Splice_Site_p.G212_splice|IL23R_uc010opr.1_Splice_Site|IL23R_uc010ops.1_Splice_Site_p.G180_splice|IL23R_uc010opt.1_Splice_Site_p.G24_splice|IL23R_uc010opu.1_Splice_Site_p.G79_splice|IL23R_uc010opv.1_Splice_Site_p.G141_splice|IL23R_uc010opw.1_Intron|IL23R_uc010opx.1_Splice_Site_p.G24_splice|IL23R_uc010opy.1_Splice_Site_p.G150_splice|IL23R_uc010opz.1_Splice_Site_p.G24_splice|IL23R_uc010oqa.1_Splice_Site_p.G24_splice|IL23R_uc010oqb.1_Splice_Site_p.G212_splice|IL23R_uc010oqc.1_Splice_Site_p.G99_splice|IL23R_uc010oqd.1_Intron|IL23R_uc010oqe.1_Intron|IL23R_uc010oqf.1_Splice_Site|IL23R_uc010oqg.1_Intron|IL23R_uc010oqh.1_Splice_Site_p.G24_splice|IL23R_uc001dds.2_Splice_Site_p.G128_splice|IL23R_uc001ddt.2_Intron	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor						inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						TCCGAACTGGGTAGGTTTTTG	0.323000													4	38	---	---	---	---	0	0	0.000248	0	0
AMY2A	279	broad.mit.edu	37	1	104160681	104160681	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr1:104160681G>A	uc001dut.2	+	2	338	c.274G>A	c.(274-276)GAT>AAT	p.D92N	AMY2A_uc010ouq.1_Missense_Mutation_p.D92N	NM_000699	NP_000690	P04746	AMYP_HUMAN	pancreatic amylase alpha 2A precursor	92					carbohydrate catabolic process|polysaccharide digestion	extracellular space	alpha-amylase activity|calcium ion binding|chloride ion binding			ovary(1)|skin(1)	2		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)	Acarbose(DB00284)|Bentiromide(DB00522)|Icodextrin(DB00702)|Miglitol(DB00491)|Pancrelipase(DB00085)	TGGAAATGAAGATGAATTTAG	0.353000													7	181	---	---	---	---	0	0	0.001984	0	0
AGAP5	729092	broad.mit.edu	37	10	75435071	75435071	+	Silent	SNP	G	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr10:75435071G>A	uc009xri.2	-	8	1388	c.1347C>T	c.(1345-1347)TGC>TGT	p.C449C	AGAP5_uc001juu.3_Silent_p.C410C	NM_001144000	NP_001137472	A6NIR3	AGAP5_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	449					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TACTGCTCTCGCATGACTGCA	0.592000													30	77	---	---	---	---	0	0	0.003610	0	0
OR4C11	219429	broad.mit.edu	37	11	55371142	55371142	+	Silent	SNP	G	A	A	rs146621611	byFrequency	TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr11:55371142G>A	uc010rii.1	-	1	708	c.708C>T	c.(706-708)TCC>TCT	p.S236S		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	236	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACGTGCAAGCGGAGAGAGCCT	0.413000													4	113	---	---	---	---	0	0	0.000248	0	0
PZP	5858	broad.mit.edu	37	12	9355129	9355129	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr12:9355129C>T	uc001qvl.2	-	3	448	c.419G>A	c.(418-420)GGA>GAA	p.G140E	PZP_uc009zgl.2_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						ACCTGTCTGTCCTGGTTTATA	0.498000													7	163	---	---	---	---	0	0	0.001984	0	0
PDZRN4	29951	broad.mit.edu	37	12	41966431	41966431	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr12:41966431T>C	uc010skn.1	+	10	1321	c.1253T>C	c.(1252-1254)ATT>ACT	p.I418T	PDZRN4_uc001rmq.3_Missense_Mutation_p.I359T|PDZRN4_uc009zjz.2_Missense_Mutation_p.I357T|PDZRN4_uc001rmr.2_Missense_Mutation_p.I244T	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	617							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				TCAGACTGCATTGGCAACCCA	0.473000													20	60	---	---	---	---	0	0	0.001523	0	0
FAM155A	728215	broad.mit.edu	37	13	108518546	108518546	+	Silent	SNP	G	C	C			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr13:108518546G>C	uc001vql.2	-	1	915	c.399C>G	c.(397-399)CCC>CCG	p.P133P		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	133						integral to membrane	binding			skin(1)	1						CTCCCGGGGAGGGGGGCAGGG	0.711000													8	20	---	---	---	---	0	0	0.000978	0	0
TSHR	7253	broad.mit.edu	37	14	81609760	81609760	+	Missense_Mutation	SNP	T	C	C	rs121908864		TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr14:81609760T>C	uc001xvd.1	+	10	1514	c.1358T>C	c.(1357-1359)ATG>ACG	p.M453T		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	453	Helical; Name=2; (Potential).		M -> T (in HTNA; sporadic; found in toxic thyroid nodules and hyperfunctioning thyroid adenomas).		cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity	p.M453T(34)		thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CGCTTTCTCATGTGCAACCTG	0.527000			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						52	105	---	---	---	---	0	0	0.003610	0	0
GGA2	23062	broad.mit.edu	37	16	23498084	23498084	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr16:23498084G>T	uc002dlq.2	-	7	683	c.607C>A	c.(607-609)CAC>AAC	p.H203N	GGA2_uc010bxo.1_RNA	NM_015044	NP_055859	Q9UJY4	GGA2_HUMAN	ADP-ribosylation factor binding protein 2	203	GAT.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|clathrin-coated vesicle|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(48;0.0386)		TCCTCGGGGTGGTTGCTCTTT	0.507000													68	214	---	---	---	---	2.40655e-23	4.36745e-23	0.003610	1	0
ADAMTS18	170692	broad.mit.edu	37	16	77401462	77401462	+	Silent	SNP	G	A	A	rs113746494		TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr16:77401462G>A	uc002ffc.3	-	4	1073	c.654C>T	c.(652-654)CCC>CCT	p.P218P	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	218					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.G216_G219del(1)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						GGCCAGAGCCGGGGTAGCCAC	0.552000													5	107	---	---	---	---	0	0	0.000602	0	0
ZNF254	9534	broad.mit.edu	37	19	24310503	24310503	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr19:24310503T>G	uc002nru.2	+	4	1835	c.1701T>G	c.(1699-1701)ATT>ATG	p.I567M	ZNF254_uc010xrk.1_Missense_Mutation_p.I482M	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	567	C2H2-type 13.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ATAAGAGAATTCATACTGGAG	0.333000													13	33	---	---	---	---	0	0	0.002450	0	0
TOMM40	10452	broad.mit.edu	37	19	45397111	45397111	+	Silent	SNP	C	T	T			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr19:45397111C>T	uc002ozx.3	+	5	611	c.510C>T	c.(508-510)CCC>CCT	p.P170P	TOMM40_uc002ozy.3_Silent_p.P170P|TOMM40_uc002paa.3_Silent_p.P170P|TOMM40_uc002ozz.2_Silent_p.P170P	NM_006114	NP_006105	O96008	TOM40_HUMAN	translocase of outer mitochondrial membrane 40	170					protein targeting to mitochondrion	integral to membrane of membrane fraction|integral to mitochondrial outer membrane|mitochondrial outer membrane translocase complex|pore complex	porin activity|protein transmembrane transporter activity|voltage-gated anion channel activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)			OV - Ovarian serous cystadenocarcinoma(262;0.0033)|Epithelial(262;0.176)		AGCTGGGCCCCGGTCTCAGGT	0.647000													20	42	---	---	---	---	0	0	0.008871	0	0
PLEK	5341	broad.mit.edu	37	2	68608012	68608012	+	Missense_Mutation	SNP	G	A	A	rs144599110		TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr2:68608012G>A	uc002sen.3	+	3	518	c.356G>A	c.(355-357)CGA>CAA	p.R119Q	PLEK_uc010fde.2_Missense_Mutation_p.R119Q	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	119					actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		AGGTCCATTCGACTGCCAGAA	0.458000													6	237	---	---	---	---	0	0	0.001984	0	0
STAT4	6775	broad.mit.edu	37	2	191900911	191900911	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr2:191900911T>A	uc002usm.1	-	17	1803	c.1549A>T	c.(1549-1551)ATG>TTG	p.M517L	STAT4_uc002usn.1_Missense_Mutation_p.M517L|STAT4_uc010zgk.1_Missense_Mutation_p.M362L|STAT4_uc002uso.2_Missense_Mutation_p.M517L	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	517					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			TCTGCCAGCATATGGAGTTGA	0.458000													6	81	---	---	---	---	0	0	0.003080	0	0
C21orf70	85395	broad.mit.edu	37	21	46363721	46363721	+	Silent	SNP	G	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr21:46363721G>A	uc002zgl.2	+	2	270	c.252G>A	c.(250-252)TCG>TCA	p.S84S	C21orf70_uc002zgm.2_Intron	NM_058190	NP_478070	Q9NSI2	CU070_HUMAN	hypothetical protein LOC85395	84											0				Colorectal(79;0.248)		AGGCAGGCTCGAGTGCACGGA	0.602000													18	53	---	---	---	---	0	0	0.006122	0	0
CXXC4	80319	broad.mit.edu	37	4	105412390	105412390	+	Silent	SNP	C	T	T			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr4:105412390C>T	uc003hxg.2	-	1	78	c.63G>A	c.(61-63)TTG>TTA	p.L21L	uc003hxh.1_Intron|CXXC4_uc010ilo.2_Intron	NM_025212	NP_079488	Q9H2H0	CXXC4_HUMAN	CXXC finger 4	21					negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway|zygotic specification of dorsal/ventral axis		DNA binding|PDZ domain binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;3.05e-08)		TTGCCATTTGCAACGACGGCT	0.483000													16	306	---	---	---	---	0	0	0.004990	0	0
PEX1	5189	broad.mit.edu	37	7	92120650	92120650	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr7:92120650A>G	uc003uly.2	-	21	3470	c.3374T>C	c.(3373-3375)ATG>ACG	p.M1125T	PEX1_uc011khr.1_Missense_Mutation_p.M917T|PEX1_uc010ley.2_Missense_Mutation_p.M1068T|PEX1_uc011khs.1_Missense_Mutation_p.M803T	NM_000466	NP_000457	O43933	PEX1_HUMAN	peroxin1	1125					microtubule-based peroxisome localization|protein import into peroxisome matrix	cytosol|nucleus|peroxisomal membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding|protein complex binding			ovary(1)|central_nervous_system(1)	2	all_cancers(62;9.35e-11)|all_epithelial(64;4.59e-10)|Breast(17;0.00201)|all_lung(186;0.0438)|Lung NSC(181;0.0592)	Breast(660;0.000932)|all_neural(109;0.00391)|Myeloproliferative disorder(862;0.0122)|Ovarian(593;0.023)|Medulloblastoma(109;0.123)	GBM - Glioblastoma multiforme(5;4.06e-06)|STAD - Stomach adenocarcinoma(4;4.51e-05)|all cancers(6;5.32e-05)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			GAGCCGGTACATATTGAATTT	0.408000													3	116	---	---	---	---	0	0	0.000602	0	0
DLC1	10395	broad.mit.edu	37	8	12948874	12948874	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr8:12948874T>A	uc003wwm.2	-	14	4252	c.3808A>T	c.(3808-3810)ACT>TCT	p.T1270S	DLC1_uc003wwk.1_Missense_Mutation_p.T833S|DLC1_uc003wwl.1_Missense_Mutation_p.T867S|DLC1_uc011kxx.1_Missense_Mutation_p.T759S	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1270	Rho-GAP.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						AGCCCTTGAGTGGCAGCTAGG	0.423000													30	81	---	---	---	---	0	0	0.002096	0	0
ASTN2	23245	broad.mit.edu	37	9	119770423	119770423	+	Silent	SNP	G	A	A			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr9:119770423G>A	uc004bjs.1	-	7	1640	c.1539C>T	c.(1537-1539)CTC>CTT	p.L513L	ASTN2_uc004bjr.1_Silent_p.L513L|ASTN2_uc004bjt.1_Silent_p.L462L	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	513	Extracellular (Potential).|EGF-like 1.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TTTGTCCACAGAGGTCCCTCA	0.582000													10	77	---	---	---	---	0	0	0.008291	0	0
IGSF1	3547	broad.mit.edu	37	X	130411859	130411859	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chrX:130411859G>C	uc004ewd.2	-	13	2529	c.2291C>G	c.(2290-2292)CCC>CGC	p.P764R	IGSF1_uc004ewe.3_Missense_Mutation_p.P758R|IGSF1_uc004ewf.2_Missense_Mutation_p.P744R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	764	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CGGCTCACTGGGCTCAGACCA	0.527000													7	112	---	---	---	---	0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	1	1175383	1175383	+	IGR	DEL	G	-	-			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr1:1175383delG								B3GALT6 (4965 upstream) : FAM132A (2450 downstream)																							CCGGCACGTAGCCGGCTGCTC	0.677													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	134670204	134670205	+	IGR	INS	-	C	C	rs55844842		TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr11:134670204_134670205insC								B3GAT1 (388392 upstream) : None (None downstream)																							GTCTCTTGGATTGCAGTGCTTT	0.644													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32490382	32490382	+	IGR	DEL	A	-	-			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr16:32490382delA								HERC2P4 (326508 upstream) : TP53TG3B (194459 downstream)																							ACAAGAGACCAGGGGGATAAG	0.393													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	75226283	75226283	+	IGR	DEL	T	-	-			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr16:75226283delT								ZFP1 (20152 upstream) : CTRB2 (11712 downstream)																							AAATCAGAACTTTTTTTTTTT	0.179													2	4	---	---	---	---					
ZNF624	57547	broad.mit.edu	37	17	16527226	16527227	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr17:16527226_16527227insT	uc010cpi.1	-	6	1056_1057	c.973_974insA	c.(973-975)ATCfs	p.I325fs		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	325	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TCCAGTGTGGATTTTTTTGTGC	0.351													29	90	---	---	---	---					
CUX1	1523	broad.mit.edu	37	7	101892133	101892135	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EM-A2OW-01A-11D-A202-08	TCGA-EM-A2OW-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	17a66d24-de77-4f2a-a8ad-d2c6a69e7671	a4765371-2387-4002-9887-2615e5136f7b	g.chr7:101892133_101892135delCAG	uc003uyx.3	+	24	4367_4369	c.4329_4331delCAG	c.(4327-4332)AACAGC>AAC	p.S1448del	CUX1_uc003uys.3_In_Frame_Del_p.S1459del|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1448					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CGCCCAGCAACAGCAGCAGCAGC	0.581													2	4	---	---	---	---					
