Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ANKRD30A	91074	broad.mit.edu	37	10	37454025	37454025	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr10:37454025A>T	uc001iza.1	+	18	1937	c.1838A>T	c.(1837-1839)GAG>GTG	p.E613V		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	669						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity	p.E613K(1)		ovary(7)|breast(1)|skin(1)	9						TTTATAGATGAGATACTCCCA	0.308000													6	48	---	---	---	---	0	0	0.038147	0	0
CHUK	1147	broad.mit.edu	37	10	101953150	101953150	+	Silent	SNP	T	C	C			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr10:101953150T>C	uc001kqp.2	-	19	2068	c.2013A>G	c.(2011-2013)CTA>CTG	p.L671L		NM_001278	NP_001269	O15111	IKKA_HUMAN	conserved helix-loop-helix ubiquitous kinase	671					I-kappaB phosphorylation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|nucleus	ATP binding|identical protein binding|IkappaB kinase activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|lung(1)|breast(1)	7		Colorectal(252;0.117)		Epithelial(162;2.05e-10)|all cancers(201;1.91e-08)		CTGCACCTTCTAGACTGGATC	0.473000													22	51	---	---	---	---	0	0	0.076483	0	0
LOC650368	650368	broad.mit.edu	37	11	3427759	3427759	+	RNA	SNP	C	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr11:3427759C>T	uc010qxs.1	+	9		c.752C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						TGTCTGCACACGTCCTGCAGT	0.612000													4	52	---	---	---	---	0	0	0.009096	0	0
MLF2	8079	broad.mit.edu	37	12	6859403	6859403	+	Silent	SNP	C	A	A			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr12:6859403C>A	uc010sfi.1	-	6	402	c.339G>T	c.(337-339)ACG>ACT	p.T113T	MLF2_uc001qqp.2_Silent_p.T113T|MLF2_uc009zey.1_Silent_p.T113T	NM_005439	NP_005430	Q15773	MLF2_HUMAN	myeloid leukemia factor 2	113					defense response	cytoplasm|nucleus	protein binding			large_intestine(1)	1						CACCATCACCCGTATTGGAGT	0.567000													5	156	---	---	---	---	8.12818e-05	0.000133007	0.029380	1	0
LOC642846	642846	broad.mit.edu	37	12	9447488	9447488	+	Missense_Mutation	SNP	C	T	T	rs75114985		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr12:9447488C>T	uc010sgq.1	+	5	569	c.478C>T	c.(478-480)CGG>TGG	p.R160W	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_Missense_Mutation_p.R10W|LOC642846_uc001qvo.2_Missense_Mutation_p.R10W					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						GGAGGCCGAGCGGCTGGAGCA	0.622000													3	9	---	---	---	---	0	0	0.014758	0	0
ITGAX	3687	broad.mit.edu	37	16	31374648	31374648	+	Silent	SNP	C	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr16:31374648C>T	uc002ebu.1	+	14	1730	c.1663C>T	c.(1663-1665)CTG>TTG	p.L555L	ITGAX_uc002ebt.2_Silent_p.L555L|ITGAX_uc010vfk.1_Silent_p.L205L	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	555	Extracellular (Potential).|FG-GAP 6.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGCTGTCTACCTGTTTCACGG	0.622000													38	115	---	---	---	---	0	0	0.086207	0	0
Unknown	0	broad.mit.edu	37	16	32190720	32190720	+	RNA	SNP	G	A	A			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr16:32190720G>A	uc010vfv.1	-	7		c.1104C>T								Homo sapiens cDNA FLJ60890 complete cds, moderately similar to HECT domain and RCC1-like domain-containing protein 2.																		ATGAGACGTCGGACAGCTACA	0.512000													3	9	---	---	---	---	0	0	0.014758	0	0
ACD	65057	broad.mit.edu	37	16	67692859	67692859	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr16:67692859T>C	uc002etq.3	-	7	1212	c.875A>G	c.(874-876)CAC>CGC	p.H292R	ACD_uc002etp.3_Missense_Mutation_p.H289R|ACD_uc002etr.3_Missense_Mutation_p.H289R|ACD_uc010vjt.1_3'UTR|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	292	Interaction with POT1.				intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGCAGCCCAGTGGGTGACAGG	0.607000													16	75	---	---	---	---	0	0	0.038395	0	0
ROS1	6098	broad.mit.edu	37	6	117662322	117662322	+	Silent	SNP	G	A	A			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr6:117662322G>A	uc003pxp.1	-	30	5254	c.5055C>T	c.(5053-5055)ATC>ATT	p.I1685I	ROS1_uc011ebi.1_Intron|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1685	Fibronectin type-III 8.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CCCAAAATCTGATGAGGTTAA	0.353000			T	GOPC|ROS1	glioblastoma|NSCLC								9	27	---	---	---	---	0	0	0.058154	0	0
ZNF117	51351	broad.mit.edu	37	7	64438817	64438817	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr7:64438817T>C	uc003ttr.2	-	4	2417	c.1132A>G	c.(1132-1134)ACA>GCA	p.T378A		NM_015852	NP_056936	Q03924	ZN117_HUMAN	zinc finger protein 117	378	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		Lung NSC(55;0.0295)|all_lung(88;0.0691)				ATCTTATGTGTATTAAGGGCT	0.383000													7	53	---	---	---	---	0	0	0.038147	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				15	29	---	---	---	---	0	0	0.033300	0	0
JAK2	3717	broad.mit.edu	37	9	5029859	5029859	+	Silent	SNP	C	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr9:5029859C>T	uc010mhm.2	+	3	416	c.303C>T	c.(301-303)GTC>GTT	p.V101V	JAK2_uc003ziw.2_Silent_p.V101V	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	101	Interaction with cytokine/interferon/growth hormone receptors (By similarity).|FERM.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		CCAACCATGTCTTCCATATAG	0.368000		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				16	99	---	---	---	---	0	0	0.033300	0	0
Unknown	0	broad.mit.edu	37	9	68414259	68414259	+	RNA	SNP	C	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr9:68414259C>T	uc004aex.2	+	1		c.814C>T								Homo sapiens mRNA; cDNA DKFZp564N0763 (from clone DKFZp564N0763).																		ccacagtggcctcaaagaact	0.254000													3	19	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	MT	3022	3022	+	5'Flank	SNP	G	A	A			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chrM:3022G>A	uc004coq.3	-						uc004cos.3_RNA|uc011mfh.1_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		GATGGTGCAGCCGCTATTAAA	0.453000													7	217	---	---	---	---	0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	MT	12591	12591	+	RNA	SNP	C	A	A			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chrM:12591C>A	uc004cox.3	+	1		c.255C>A			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CTAGACTACTTCTCCATAATA	0.393000													10	190	---	---	---	---	6.42651e-13	1.10169e-12	0.080935	1	0
Unknown	0	broad.mit.edu	37	MT	15135	15135	+	Silent	SNP	G	A	A			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chrM:15135G>A	uc004coy.2	+	1	375	c.300G>A	c.(298-300)AGG>AGA	p.R100R	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		AGCCTTCATAGGCTATGTCCT	0.463000											OREG0007583	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	5	230	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	1	2629200	2629201	+	IGR	DEL	CA	-	-			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr1:2629200_2629201delCA								MMEL1 (64719 upstream) : ACTRT2 (308845 downstream)																							GAAGAGCAACCACACCCCCAGG	0.629													8	32	---	---	---	---					
ESPNP	284729	broad.mit.edu	37	1	17034125	17034126	+	Frame_Shift_Ins	INS	-	AGCT	AGCT	rs141324796	by1000genomes	TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr1:17034125_17034126insAGCT	uc001azn.1	-	3	478_479	c.364_365insAGCT	c.(364-366)TGGfs	p.W122fs	ESPNP_uc010ocj.1_Frame_Shift_Ins_p.W52fs	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CAGCAGCAGCCAGCTGAGCACC	0.663													8	10	---	---	---	---					
TINAGL1	64129	broad.mit.edu	37	1	32041150	32041150	+	5'Flank	DEL	G	-	-			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr1:32041150delG	uc001bta.2	+						TINAGL1_uc001bsz.2_Intron|TINAGL1_uc010ogi.1_5'Flank|TINAGL1_uc010ogj.1_5'Flank|TINAGL1_uc010ogk.1_5'Flank	NM_022164	NP_071447	Q9GZM7	TINAL_HUMAN	tubulointerstitial nephritis antigen-like 1						endosome transport|immune response|proteolysis	extracellular region	cysteine-type endopeptidase activity|extracellular matrix structural constituent|polysaccharide binding|scavenger receptor activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		STAD - Stomach adenocarcinoma(196;0.0526)|READ - Rectum adenocarcinoma(331;0.145)		GGAGGGCAAAGGGAGTCCCTG	0.622													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396183	42396184	+	IGR	INS	-	A	A	rs150255523		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr10:42396183_42396184insA								None (None upstream) : LOC441666 (431131 downstream)																							gtaatcatcatcaaatggaatc	0.000													8	1697	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	84036	84053	+	IGR	DEL	GGGAGCCTGGAAGCACAC	-	-	rs3743872	by1000genomes	TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr16:84036_84053delGGGAGCCTGGAAGCACAC								None (None upstream) : POLR3K (12947 downstream)																							CTTGTCTCTGGGGAGCCTGGAAGCACACGGGCTGGCTA	0.633													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33982909	33982909	+	IGR	DEL	T	-	-			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr16:33982909delT								MIR1826 (17317 upstream) : UBE2MP1 (420893 downstream)																							gattaagcagtttggaaacag	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46406958	46406958	+	IGR	DEL	T	-	-	rs4398130		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr16:46406958delT								None (None upstream) : ANKRD26P1 (96291 downstream)																							attcgcttgctttcgatgatg	0.000													7	621	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	29656288	29656288	+	IGR	DEL	T	-	-			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr18:29656288delT								RNF125 (3134 upstream) : RNF138 (15549 downstream)																							tgtttttttgttttttttttg	0.179													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	54843564	54843565	+	IGR	INS	-	C	C	rs144647366	by1000genomes	TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr19:54843564_54843565insC								LILRA5 (19155 upstream) : LILRA4 (1128 downstream)																							CGGCTGCTCCTCCCCAGGCTGC	0.723													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	132579697	132579697	+	IGR	DEL	C	-	-			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr2:132579697delC								C2orf27B (20463 upstream) : NCRNA00164 (325467 downstream)																							AGAGCCCACTCCCAAGATGTG	0.597													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9831845	9831846	+	IGR	INS	-	T	T			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr21:9831845_9831846insT								None (None upstream) : None (None downstream)																							AGTGCCCATGCTGACAGGAACC	0.564													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	11180762	11180762	+	IGR	DEL	T	-	-	rs146742149		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr21:11180762delT								BAGE (81825 upstream) : None (None downstream)																							aACTAACTTCTTTTTTTTTTT	0.169													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	18883954	18883954	+	IGR	DEL	G	-	-	rs62232330		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr22:18883954delG								GGT3P (90962 upstream) : DGCR6 (9587 downstream)																							tttaaaggaagaaaaatttca	0.000													7	148	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	108842185	108842191	+	IGR	DEL	CCCTCTC	-	-	rs149969366	by1000genomes	TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr3:108842185_108842191delCCCTCTC								MORC1 (5192 upstream) : C3orf66 (54821 downstream)																							cttccctcttccctctcccctctcccc	0.077													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	19815894	19815895	+	IGR	INS	-	A	A	rs145239076		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr4:19815894_19815895insA								None (None upstream) : SLIT2 (439340 downstream)																							CTCTGGGCTGTaaaaaaaaaaa	0.218													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49155210	49155211	+	IGR	INS	-	C	C			TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr4:49155210_49155211insC								CWH43 (91117 upstream) : None (None downstream)																							tccattccattcattccattgc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68416597	68416598	+	IGR	INS	-	C	C	rs150479781		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr9:68416597_68416598insC								FAM27B (622408 upstream) : MIR1299 (585641 downstream)																							CTTAAAACAAAACggccaggtg	0.040													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68421236	68421236	+	IGR	DEL	T	-	-	rs67952768		TCGA-EM-A2OX-01A-11D-A202-08	TCGA-EM-A2OX-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	474b66e6-0202-43b6-8806-d0470074c286	73556664-4b53-4e6b-94c7-28f1061cf074	g.chr9:68421236delT								FAM27B (627047 upstream) : MIR1299 (581003 downstream)																							CCCGGGGATCTCCTTAAAATG	0.448													7	9	---	---	---	---					
