Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM2	7799	broad.mit.edu	37	1	14059320	14059320	+	Silent	SNP	A	G	G			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr1:14059320A>G	uc001avi.2	+	4	1030	c.174A>G	c.(172-174)CCA>CCG	p.P58P	PRDM2_uc001avg.2_Silent_p.P58P|PRDM2_uc001avh.2_Silent_p.P58P|PRDM2_uc001avj.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	58	SET.					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		AATTTGGGCCATTTGTTGGTG	0.289000													3	59	---	---	---	---	0	0	0.014758	0	0
OR4C6	219432	broad.mit.edu	37	11	55432991	55432991	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr11:55432991G>C	uc001nht.3	+	3	614	c.349G>C	c.(349-351)GCC>CCC	p.A117P	OR4C6_uc010rik.1_Missense_Mutation_p.A117P	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CACTGTGATGGCCTATGACCG	0.567000													3	98	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	15	28948349	28948349	+	5'Flank	SNP	T	C	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr15:28948349T>C	uc001zcd.2	+											DQ593033																		CCACTGGCTCTCAGAAGGGGT	0.567000													3	4	---	---	---	---	0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	15	102305084	102305084	+	5'Flank	SNP	T	C	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr15:102305084T>C	uc002cbx.1	-						uc002ccc.1_5'Flank|uc010uth.1_RNA|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		GACATCAACATGAACACCATC	0.632000													4	24	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	15	102305092	102305092	+	5'Flank	SNP	A	G	G			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr15:102305092A>G	uc002cbx.1	-						uc002ccc.1_5'Flank|uc010uth.1_RNA|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		CATGAACACCATCAGCACAGC	0.632000													4	27	---	---	---	---	0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	16	90161618	90161618	+	Missense_Mutation	SNP	C	T	T	rs13338202	by1000genomes	TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr16:90161618C>T	uc002fqp.2	+	3	971	c.493C>T	c.(493-495)CGT>TGT	p.R165C	uc002fqq.2_Missense_Mutation_p.R182C					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.																		CAGTGATGGACGTTGTCAGAA	0.607000													3	31	---	---	---	---	0	0	0.009096	0	0
SSTR2	6752	broad.mit.edu	37	17	71166132	71166132	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr17:71166132G>T	uc002jje.2	+	2	1034	c.674G>T	c.(673-675)TGT>TTT	p.C225F		NM_001050	NP_001041	P30874	SSR2_HUMAN	somatostatin receptor 2	225	Helical; Name=5; (Potential).				digestion|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	PDZ domain binding|somatostatin receptor activity				0			LUSC - Lung squamous cell carcinoma(166;0.197)			ACCATCATCTGTCTTTGCTAC	0.502000													18	145	---	---	---	---	5.03518e-11	8.95144e-11	0.043863	1	0
KLHL14	57565	broad.mit.edu	37	18	30349946	30349946	+	Silent	SNP	C	T	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr18:30349946C>T	uc002kxm.1	-	2	997	c.609G>A	c.(607-609)AAG>AAA	p.K203K		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	203						cytosol|endoplasmic reticulum membrane				ovary(1)	1						TGTTGGCCAGCTTCTTGGTCT	0.627000													4	114	---	---	---	---	0	0	0.014758	0	0
POU2F2	5452	broad.mit.edu	37	19	42603703	42603703	+	Missense_Mutation	SNP	C	A	A			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr19:42603703C>A	uc002osp.2	-	7	544	c.477G>T	c.(475-477)CAG>CAT	p.Q159H	POU2F2_uc002osn.2_Missense_Mutation_p.Q159H|POU2F2_uc002oso.2_5'UTR|POU2F2_uc002osq.2_Missense_Mutation_p.Q159H|POU2F2_uc002osr.1_Missense_Mutation_p.Q159H	NM_002698	NP_002689	P09086	PO2F2_HUMAN	POU domain, class 2, transcription factor 2	159					humoral immune response|transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2		Prostate(69;0.059)				CGGCCCGGGGCTGGGAGGTCA	0.607000													14	32	---	---	---	---	2.23348e-06	3.76166e-06	0.146539	1	0
ALMS1	7840	broad.mit.edu	37	2	73828375	73828375	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr2:73828375A>T	uc002sje.1	+	21	12040	c.11929A>T	c.(11929-11931)AAC>TAC	p.N3977Y	ALMS1_uc002sjf.1_Missense_Mutation_p.N3933Y|ALMS1_uc002sjh.1_Missense_Mutation_p.N3363Y	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3975					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AAAGAAGGAAAACGTGCCTAA	0.468000													6	203	---	---	---	---	0	0	0.021553	0	0
ALS2CR12	130540	broad.mit.edu	37	2	202216069	202216069	+	Missense_Mutation	SNP	C	T	T	rs142397497		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr2:202216069C>T	uc010ftg.2	-	2	503	c.59G>A	c.(58-60)CGG>CAG	p.R20Q	ALS2CR12_uc002uya.3_Missense_Mutation_p.R20Q|ALS2CR12_uc010fth.2_RNA	NM_139163	NP_631902	Q96Q35	AL2SB_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	20					regulation of GTPase activity		protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GATTAGCTTCCGTGGTCCCAA	0.557000													25	49	---	---	---	---	0	0	0.134883	0	0
C21orf99	149992	broad.mit.edu	37	21	14414902	14414902	+	RNA	SNP	G	A	A	rs2821609	by1000genomes	TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr21:14414902G>A	uc002yiy.3	+	2		c.339G>A			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CCAGCTTGACGTCCTTGATGG	0.443000													8	49	---	---	---	---	0	0	0.047766	0	0
NR3C2	4306	broad.mit.edu	37	4	149075797	149075797	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr4:149075797G>C	uc003ilj.3	-	5	2604	c.2270C>G	c.(2269-2271)TCA>TGA	p.S757*	NR3C2_uc003ilk.3_Intron|NR3C2_uc010iph.2_Intron	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	757	Steroid-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ATCTGGTTTTGAGCTGTCATA	0.493000													4	215	---	---	---	---	0	0	0.009096	0	0
C7orf57	136288	broad.mit.edu	37	7	48080988	48080988	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:48080988C>T	uc003toh.3	+	3	325	c.113C>T	c.(112-114)GCG>GTG	p.A38V	C7orf57_uc003toi.3_5'UTR	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	38										ovary(1)	1						GCCCCACCAGCGTCCCAGATC	0.542000													30	49	---	---	---	---	0	0	0.059317	0	0
TSPAN33	340348	broad.mit.edu	37	7	128801563	128801563	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:128801563T>C	uc003vop.1	+	2	375	c.146T>C	c.(145-147)CTA>CCA	p.L49P		NM_178562	NP_848657	Q86UF1	TSN33_HUMAN	tetraspanin 33	49	Extracellular (Potential).					integral to membrane				ovary(1)	1						TACGCTCGGCTAATGAAGCAT	0.572000													3	175	---	---	---	---	0	0	0.115264	0	0
CSMD1	64478	broad.mit.edu	37	8	3008978	3008978	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr8:3008978G>T	uc011kwk.1	-	40	6365	c.5975C>A	c.(5974-5976)CCA>CAA	p.P1992Q	CSMD1_uc011kwj.1_Missense_Mutation_p.P1384Q|CSMD1_uc003wqe.2_Missense_Mutation_p.P1148Q|CSMD1_uc010lrg.2_Missense_Mutation_p.P60Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1992	Extracellular (Potential).|CUB 12.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTAAGAACCTGGGAAGCCGGG	0.488000													10	28	---	---	---	---	6.40141e-05	9.75453e-05	0.080935	1	0
Unknown	0	broad.mit.edu	37	1	121484720	121484721	+	IGR	INS	-	G	G	rs2200142		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr1:121484720_121484721insG								LOC647121 (171034 upstream) : None (None downstream)																							tctttggaaacggttttttctc	0.000													15	536	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													9	64	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													8	206	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262814	130262814	+	IGR	DEL	A	-	-	rs142355007		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr10:130262814delA								MKI67 (338346 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.025													9	38	---	---	---	---					
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	-	-	rs140689079		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr18:51795958_51795960delCGA	uc002lfj.3	+	1	110_112	c.42_44delCGA	c.(40-45)GGCGAC>GGC	p.D17del	POLI_uc010xds.1_In_Frame_Del_p.D17del|POLI_uc002lfk.3_5'UTR|POLI_uc002lfl.1_5'Flank	NM_007195	NP_009126	Q9UNA4	POLI_HUMAN	DNA polymerase iota	17					DNA repair|DNA replication	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding|protein binding			ovary(2)|kidney(1)	3				Colorectal(16;0.0234)|READ - Rectum adenocarcinoma(59;0.197)		AAGGCGGCGGCGACGACGACGAG	0.729								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736453	27736453	+	IGR	DEL	T	-	-	rs4567863		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr19:27736453delT								None (None upstream) : LOC148189 (544949 downstream)																							tggaaacgggtttttttcttg	0.000													8	214	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	21112411	21112411	+	IGR	DEL	G	-	-	rs1829338	by1000genomes	TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr21:21112411delG								None (None upstream) : None (None downstream)																							aacaaggagagaaaaaaaaaA	0.154													2	4	---	---	---	---					
INTU	27152	broad.mit.edu	37	4	128627849	128627850	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr4:128627849_128627850insA	uc003ifk.1	+	12	2066_2067	c.1996_1997insA	c.(1996-1998)GAAfs	p.E666fs	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	666										ovary(1)	1						TGGATCACGTGAAAAAACAGAT	0.465													40	87	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	180708776	180708777	+	IGR	INS	-	G	G	rs140221514		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr5:180708776_180708777insG								TRIM52 (20657 upstream) : None (None downstream)																							gggcggtaggagggggctggag	0.144													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:61968770delG								None (None upstream) : LOC643955 (782902 downstream)																							ttgaaacactgtttttgcgga	0.000													8	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61969534	61969534	+	IGR	DEL	A	-	-	rs56839084		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:61969534delA								None (None upstream) : LOC643955 (782138 downstream)																							taataaccagacagaatcatt	0.000													10	605	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	65888988	65888988	+	IGR	DEL	T	-	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:65888988delT								NCRNA00174 (23593 upstream) : LOC493754 (104458 downstream)																							tttttttttcttttttttttt	0.264													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	76685729	76685730	+	IGR	DEL	AA	-	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:76685729_76685730delAA								LOC100132832 (3374 upstream) : CCDC146 (66204 downstream)																							tctgtctcacaaaaaaaaaaaa	0.248													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	158791139	158791139	+	IGR	DEL	C	-	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr7:158791139delC								WDR60 (52257 upstream) : LOC154822 (9906 downstream)																							CCCCTCCACACCCCCCACGTG	0.697													3	4	---	---	---	---					
XKR6	286046	broad.mit.edu	37	8	11058893	11058893	+	5'Flank	DEL	G	-	-	rs79111379		TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chr8:11058893delG	uc003wtk.1	-							NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related							integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		gagggacggcggggggggggg	0.244													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	24447607	24447607	+	IGR	DEL	T	-	-			TCGA-EM-A3AN-01A-11D-A202-08	TCGA-EM-A3AN-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	bba4dfcb-3dbf-4eb9-ae6f-1e3c244b9030	3bc1a6ec-1aa4-460a-ba1f-9571a8693ef6	g.chrX:24447607delT								FAM48B1 (64067 upstream) : PDK3 (35737 downstream)																							attaaacctcttttttttTTT	0.164													4	4	---	---	---	---					
