Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NAT10	55226	broad.mit.edu	37	11	34149080	34149080	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr11:34149080T>C	uc001mvk.2	+	12	1422	c.1178T>C	c.(1177-1179)ATC>ACC	p.I393T	NAT10_uc010ren.1_Missense_Mutation_p.I321T	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	393						nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				GCTGCCGCCATCCCCCTCCCC	0.502000													4	177	---	---	---	---	0	0	0.014758	0	0
CASC3	22794	broad.mit.edu	37	17	38318284	38318284	+	Silent	SNP	G	A	A			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr17:38318284G>A	uc010cwt.1	+	5	781	c.486G>A	c.(484-486)GTG>GTA	p.V162V	CASC3_uc010cws.1_Silent_p.V162V|CASC3_uc002hue.2_Silent_p.V162V	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	162	Necessary for RNA-binding, interaction with MAGOH and localization in nucleus speckles.|Sufficient to form the EJC.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						AGAACAAAGTGGGTAAAAAGG	0.468000													7	40	---	---	---	---	0	0	0.038147	0	0
ZNF93	81931	broad.mit.edu	37	19	20045210	20045210	+	Silent	SNP	A	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr19:20045210A>G	uc002non.2	+	4	1557	c.1446A>G	c.(1444-1446)AAA>AAG	p.K482K		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	482	C2H2-type 13.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						AACCCTACAAATGTGAAGAAT	0.378000													3	77	---	---	---	---	0	0	0.150653	0	0
TRPM4	54795	broad.mit.edu	37	19	49700047	49700047	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr19:49700047A>G	uc002pmw.2	+	17	2633	c.2561A>G	c.(2560-2562)CAG>CGG	p.Q854R	TRPM4_uc010emu.2_Intron|TRPM4_uc010yak.1_Missense_Mutation_p.Q318R|TRPM4_uc002pmx.2_Missense_Mutation_p.Q680R|TRPM4_uc010emv.2_Missense_Mutation_p.Q739R|TRPM4_uc010yal.1_Missense_Mutation_p.Q500R|TRPM4_uc002pmy.2_Missense_Mutation_p.Q196R	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	854	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		TCACTGAGCCAGCGCCTGCGC	0.726000													5	10	---	---	---	---	0	0	0.038147	0	0
ZNF578	147660	broad.mit.edu	37	19	53014631	53014631	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr19:53014631C>G	uc002pzp.3	+	6	1241	c.997C>G	c.(997-999)CAT>GAT	p.H333D		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	108	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		CCTTACATGCCATCATAGGTG	0.428000													20	94	---	---	---	---	0	0	0.055883	0	0
HGFAC	3083	broad.mit.edu	37	4	3443797	3443797	+	Silent	SNP	C	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr4:3443797C>G	uc003ghc.2	+	1	72	c.69C>G	c.(67-69)CTC>CTG	p.L23L	HGFAC_uc010icw.2_Silent_p.L23L	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	23					proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		TCCTCCTCCTCCTGCTGCTGC	0.716000													3	38	---	---	---	---	0	0	0.150653	0	0
AHRR	57491	broad.mit.edu	37	5	353938	353938	+	Silent	SNP	G	A	A	rs150312721	by1000genomes	TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr5:353938G>A	uc003jav.2	+	3	212	c.168G>A	c.(166-168)CCG>CCA	p.P56P	AHRR_uc003jaw.2_Silent_p.P52P|AHRR_uc010isy.2_Intron|AHRR_uc010isz.2_Silent_p.P52P	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	56	Helix-loop-helix motif.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			GCCTGCTGCCGTTCCCGCCTG	0.627000													4	117	---	---	---	---	0	0	0.150653	0	0
ZNF92	168374	broad.mit.edu	37	7	64853813	64853813	+	Silent	SNP	A	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr7:64853813A>G	uc003ttz.2	+	3	368	c.225A>G	c.(223-225)CCA>CCG	p.P75P	ZNF92_uc003tua.2_Silent_p.P6P|ZNF92_uc010kzu.2_Intron|ZNF92_uc003tub.2_Intron	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	75	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				ACAAAACCCCAGGTAGGTGAC	0.393000													3	73	---	---	---	---	0	0	0.115264	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				15	61	---	---	---	---	0	0	0.146539	0	0
FAM22F	54754	broad.mit.edu	37	9	97082748	97082748	+	Missense_Mutation	SNP	G	C	C			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr9:97082748G>C	uc004aup.1	-	5	1131	c.1110C>G	c.(1108-1110)AAC>AAG	p.N370K		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	370	Pro-rich.										0		Acute lymphoblastic leukemia(62;0.136)				GCAGGTGGGCGTTGGTCTCCG	0.692000													3	88	---	---	---	---	0	0	0.115264	0	0
NUP214	8021	broad.mit.edu	37	9	134072930	134072930	+	Missense_Mutation	SNP	A	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr9:134072930A>G	uc004cag.2	+	29	4160	c.4049A>G	c.(4048-4050)AAT>AGT	p.N1350S	NUP214_uc004cah.2_Missense_Mutation_p.N1340S|NUP214_uc004cai.2_Missense_Mutation_p.N780S|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.N176S|NUP214_uc011mcf.1_Missense_Mutation_p.N127S|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1350	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AAACCAACCAATAAGGCTTCA	0.512000			T	DEK|SET|ABL1	AML|T-ALL								13	103	---	---	---	---	0	0	0.175082	0	0
FAM47C	442444	broad.mit.edu	37	X	37027156	37027156	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrX:37027156C>G	uc004ddl.1	+	1	687	c.673C>G	c.(673-675)CAG>GAG	p.Q225E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	225										ovary(3)	3						TCTCCGCCCACAGCCTCCCAA	0.647000													5	88	---	---	---	---	0	0	0.021553	0	0
FAM47C	442444	broad.mit.edu	37	X	37027200	37027200	+	Silent	SNP	A	C	C			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrX:37027200A>C	uc004ddl.1	+	1	731	c.717A>C	c.(715-717)CCA>CCC	p.P239P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	239										ovary(3)	3						TGGAGCCTCCAGAGACTGGAG	0.637000													3	93	---	---	---	---	0	0	0.150653	0	0
SMARCA1	6594	broad.mit.edu	37	X	128649760	128649760	+	Silent	SNP	C	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrX:128649760C>G	uc004eun.3	-	5	647	c.534G>C	c.(532-534)GTG>GTC	p.V178V	SMARCA1_uc004eup.3_Silent_p.V178V|SMARCA1_uc011muk.1_Silent_p.V178V|SMARCA1_uc011mul.1_Silent_p.V178V	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	178					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GCCCCCCTTTCACATCTGGTG	0.343000													15	66	---	---	---	---	0	0	0.160694	0	0
Unknown	0	broad.mit.edu	37	X	155254706	155254706	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrX:155254706C>T	uc004fnx.3	+	8	1056	c.602C>T	c.(601-603)ACG>ATG	p.T201M		NM_182905	NP_878908			WAS protein family homolog 1																		GTGAGAGCCACGAGCCAAGGT	0.637000													3	6	---	---	---	---	0	0	0.058154	0	0
DNAJC11	55735	broad.mit.edu	37	1	6727803	6727804	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr1:6727803_6727804delTC	uc001aof.2	-	4	449_450	c.343_344delGA	c.(343-345)GAAfs	p.E115fs	DNAJC11_uc010nzt.1_Frame_Shift_Del_p.E77fs|DNAJC11_uc001aog.2_Frame_Shift_Del_p.E115fs|DNAJC11_uc010nzu.1_Frame_Shift_Del_p.E25fs	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	115					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		TCTCCTCTCTTCTCTCTCTCTC	0.505													7	80	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	8050348	8050349	+	IGR	INS	-	CAT	CAT	rs142105154	by1000genomes	TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr1:8050348_8050349insCAT								PARK7 (5007 upstream) : ERRFI1 (21431 downstream)																							ctcaccaccaccaccatcacca	0.000													6	10	---	---	---	---					
AADACL3	126767	broad.mit.edu	37	1	12785494	12785494	+	Frame_Shift_Del	DEL	G	-	-	rs7513079	by1000genomes	TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr1:12785494delG	uc009vnn.1	+	4	817	c.584delG	c.(583-585)TGTfs	p.C195fs	AADACL3_uc001aug.1_Frame_Shift_Del_p.C125fs	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	195							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		ATCTGCTACTGTTTTTTTCAA	0.458													8	171	---	---	---	---					
MAST2	23139	broad.mit.edu	37	1	46494559	46494559	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr1:46494559delT	uc001cov.2	+	18	2455	c.2172delT	c.(2170-2172)CCTfs	p.P724fs	MAST2_uc001cow.2_Frame_Shift_Del_p.P724fs|MAST2_uc001coy.1_Frame_Shift_Del_p.P398fs|MAST2_uc001coz.1_Frame_Shift_Del_p.P609fs|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	724	Protein kinase.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					GCTGCGTCCCTTTTTTTGGAG	0.552													7	328	---	---	---	---					
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				15	53	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	228636802	228636803	+	IGR	INS	-	T	T			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr1:228636802_228636803insT								HIST3H3 (23776 upstream) : HIST3H2A (8263 downstream)																							cactttcttCCTTTTTTTTTTA	0.163													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	133784	133784	+	IGR	DEL	G	-	-	rs34107798		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr10:133784delG								TUBB8 (38280 upstream) : ZMYND11 (46640 downstream)																							ACCAGGACCTGGGGGAAGCAC	0.617													5	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125014411	125014412	+	IGR	INS	-	CAC	CAC			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr10:125014411_125014412insCAC								BUB3 (89525 upstream) : GPR26 (411459 downstream)																							accaccaccatcaccaccacca	0.000													3	4	---	---	---	---					
CTBP2	1488	broad.mit.edu	37	10	126848766	126848768	+	5'Flank	DEL	TCC	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr10:126848766_126848768delTCC	uc009yak.2	-						CTBP2_uc009yal.2_Intron|CTBP2_uc001lif.3_Intron|CTBP2_uc001lih.3_Intron	NM_001329	NP_001320	P56545	CTBP2_HUMAN	C-terminal binding protein 2 isoform 1						negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent|viral genome replication|white fat cell differentiation	cell junction|synapse|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein binding				0		all_lung(145;0.0132)|Lung NSC(174;0.0193)|all_neural(114;0.116)|Colorectal(57;0.173)		Colorectal(40;0.00572)|COAD - Colon adenocarcinoma(40;0.0127)|GBM - Glioblastoma multiforme(135;0.147)		TTCGCcctcttcctcctcctcct	0.404													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	131578427	131578429	+	IGR	DEL	CCT	-	-	rs71840455		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr10:131578427_131578429delCCT								MGMT (12644 upstream) : EBF3 (55118 downstream)																							tccccctctccctcctcctcttc	0.232													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134263679	134263681	+	IGR	DEL	CCA	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr10:134263679_134263681delCCA								C10orf91 (1855 upstream) : INPP5A (87672 downstream)																							accccagcccccaccccaacccc	0.251													2	4	---	---	---	---					
MOB2	81532	broad.mit.edu	37	11	1510330	1510331	+	5'Flank	INS	-	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr11:1510330_1510331insG	uc010qwz.1	-							NM_053005	NP_443731	Q70IA6	MOB2_HUMAN	HCCA2 protein							nucleus|perinuclear region of cytoplasm	metal ion binding				0						GGGACGGGGCAGGGGGCACGGG	0.470													2	4	---	---	---	---					
GPR44	11251	broad.mit.edu	37	11	60620167	60620169	+	In_Frame_Del	DEL	GCG	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr11:60620167_60620169delGCG	uc001nqc.2	-	2	1139_1141	c.1027_1029delCGC	c.(1027-1029)CGCdel	p.R343del		NM_004778	NP_004769	Q9Y5Y4	GPR44_HUMAN	G protein-coupled receptor 44	343	Cytoplasmic (Potential).				immune response	integral to plasma membrane	N-formyl peptide receptor activity			ovary(1)	1						TGGAGGAGGTGCGGCGGCGGCGG	0.749													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	24737258	24737263	+	5'Flank	DEL	CCCCCA	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr12:24737258_24737263delCCCCCA	uc001rgb.1	-											Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		CTTCGATTAGcccccacccccacccc	0.432													6	12	---	---	---	---					
GCN1L1	10985	broad.mit.edu	37	12	120595737	120595739	+	In_Frame_Del	DEL	CTC	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr12:120595737_120595739delCTC	uc001txo.2	-	26	3014_3016	c.3001_3003delGAG	c.(3001-3003)GAGdel	p.E1001del		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1001					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGCCATCCACTCCTCCTCCTCC	0.631													8	146	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	21523814	21523815	+	IGR	INS	-	G	G	rs142431644	by1000genomes	TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr13:21523814_21523815insG								XPO4 (46901 upstream) : LATS2 (23363 downstream)																							Atttttttggtggggggcagag	0.198													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	101528241	101528242	+	5'Flank	DEL	AG	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr14:101528241_101528242delAG	uc010awh.1	+						MIR377_hsa-mir-377|MI0000785_5'Flank|MIR541_hsa-mir-541|MI0005539_5'Flank					DM004799																		TCTCGGAGGTAgagagagagag	0.470													9	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	34808366	34808367	+	IGR	INS	-	TT	TT	rs35361274	by1000genomes	TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr15:34808366_34808367insTT								GOLGA8A (126365 upstream) : GOLGA8B (9118 downstream)																							TTTTTTTTTTAAAGCACCAACC	0.431													4	9	---	---	---	---					
CHD3	1107	broad.mit.edu	37	17	7788146	7788148	+	In_Frame_Del	DEL	GAG	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr17:7788146_7788148delGAG	uc002gjd.2	+	1	24_26	c.22_24delGAG	c.(22-24)GAGdel	p.E14del		NM_001005271	NP_001005271	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				TCTGAGggacgaggaggaggagg	0.094													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	10201003	10201005	+	IGR	DEL	GGT	-	-	rs149148666		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr17:10201003_10201005delGGT								GAS7 (99135 upstream) : MYH13 (3178 downstream)																							atcttgagaaggtggtggtggtg	0.000													3	6	---	---	---	---					
ANKRD53	79998	broad.mit.edu	37	2	71204255	71204256	+	5'Flank	DEL	GA	-	-	rs66583803		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr2:71204255_71204256delGA	uc002shl.3	+						ANKRD53_uc002shk.3_5'Flank|ANKRD53_uc002shm.3_5'Flank	NM_001115116	NP_001108588	Q8N9V6	ANR53_HUMAN	ankyrin repeat domain 53 isoform a												0						cagggggagggagagagagaga	0.000													4	3	---	---	---	---					
TPTE	7179	broad.mit.edu	37	21	10944697	10944697	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr21:10944697delA	uc002yip.1	-	11	905	c.537delT	c.(535-537)TTTfs	p.F179fs	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Frame_Shift_Del_p.F161fs|TPTE_uc002yir.1_Frame_Shift_Del_p.F141fs|TPTE_uc010gkv.1_Frame_Shift_Del_p.F41fs	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	179	Helical; (Potential).				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ACTTAATGTCAAAAAAAATGT	0.299													8	190	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	28583958	28583959	+	IGR	DEL	CT	-	-	rs35289308		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr21:28583958_28583959delCT								ADAMTS5 (244519 upstream) : NCRNA00113 (510739 downstream)																							ttccgctgccctctctctctct	0.000													2	4	---	---	---	---					
PTTG1IP	754	broad.mit.edu	37	21	46276194	46276196	+	In_Frame_Del	DEL	GCA	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr21:46276194_46276196delGCA	uc002zgb.1	-	4	571_573	c.361_363delTGC	c.(361-363)TGCdel	p.C121del	PTTG1IP_uc011afj.1_RNA|PTTG1IP_uc011afk.1_Intron	NM_004339	NP_004330	P53801	PTTG_HUMAN	pituitary tumor-transforming gene 1	121	Poly-Cys.|Cytoplasmic (Potential).				protein import into nucleus	cytoplasm|integral to membrane|nucleus				ovary(1)	1				Colorectal(79;0.0659)		TCTTCCTCCTGCAGCAGCAGCAG	0.616													7	129	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	46478529	46478530	+	IGR	DEL	GG	-	-	rs112340579		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr21:46478529_46478530delGG								NCRNA00162 (53887 upstream) : C21orf122 (12343 downstream)																							gatagggagaggggggagtgtg	0.000													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16914284	16914284	+	IGR	DEL	C	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr22:16914284delC								OR11H1 (464480 upstream) : CCT8L2 (157364 downstream)																							TTTTCTAAAACTTTTGAAAGC	0.279													4	4	---	---	---	---					
XPC	7508	broad.mit.edu	37	3	14219966	14219968	+	In_Frame_Del	DEL	CCT	-	-	rs72561774		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr3:14219966_14219968delCCT	uc011ave.1	-	1	205_207	c.101_103delAGG	c.(100-105)GAGGAT>GAT	p.E34del	XPC_uc011avf.1_5'UTR|XPC_uc011avg.1_In_Frame_Del_p.E34del|LSM3_uc003byn.2_5'Flank	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	34	Poly-Glu.|Glu-rich (acidic).				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						TCGCTCTCACCCTCCTCCTCCTC	0.734			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				10	119	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	127178291	127178291	+	IGR	DEL	C	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr3:127178291delC								PLXNA1 (422063 upstream) : TPRA1 (113617 downstream)																							CAAGAGGGGGCCAGGGCTGGA	0.612													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	161146872	161146873	+	IGR	DEL	AT	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr3:161146872_161146873delAT								C3orf57 (57001 upstream) : OTOL1 (67723 downstream)																							TGGTGAAAAGATATATATATAT	0.342													3	6	---	---	---	---					
TRIM26	7726	broad.mit.edu	37	6	30157254	30157254	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr6:30157254delT	uc003npr.2	-	7	1054	c.845delA	c.(844-846)AAGfs	p.K282fs	TRIM26_uc003nps.2_Frame_Shift_Del_p.K282fs|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Frame_Shift_Del_p.K282fs	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	282							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TTCTCCGGTCTTTTTTTTAAC	0.483													10	128	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	167730030	167730031	+	IGR	INS	-	A	A			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr6:167730030_167730031insA								UNC93A (529 upstream) : TTLL2 (8543 downstream)																							cctgcccccccccaccaccctc	0.144													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	168779051	168779065	+	IGR	DEL	CCACACAGCCCGAGT	-	-	rs72112824		TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr6:168779051_168779065delCCACACAGCCCGAGT								DACT2 (58649 upstream) : SMOC2 (62966 downstream)																							AGTCCAAGTCCCACACAGCCCGAGTCCACACAGCC	0.577													2	4	---	---	---	---					
TMEM229A	730130	broad.mit.edu	37	7	123672457	123672459	+	In_Frame_Del	DEL	GCT	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr7:123672457_123672459delGCT	uc011kob.1	-	1	1065_1067	c.599_601delAGC	c.(598-603)CAGCGG>CGG	p.Q200del	uc011koc.1_Intron	NM_001136002	NP_001129474	B2RXF0	T229A_HUMAN	transmembrane protein 229A	200						host cell nucleus|integral to membrane	sequence-specific DNA binding transcription factor activity				0						GCGCCCCTCCgctgctgctgctg	0.601													6	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	67334946	67334947	+	IGR	INS	-	CC	CC			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chr9:67334946_67334947insCC								AQP7P1 (45454 upstream) : FAM27B (457983 downstream)																							CTTGTGCACGTCCTGTTTCCAA	0.535													8	163	---	---	---	---					
APOOL	139322	broad.mit.edu	37	X	84322155	84322155	+	Frame_Shift_Del	DEL	T	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrX:84322155delT	uc004eem.2	+	6	431	c.417delT	c.(415-417)ACTfs	p.T139fs	APOOL_uc010nmp.2_Intron	NM_198450	NP_940852	Q6UXV4	APOOL_HUMAN	apolipoprotein O-like precursor	139						extracellular region					0						AGAAAATTACTTATCCTCTGG	0.333													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	9930139	9930139	+	IGR	DEL	C	-	-			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrY:9930139delC								TTTY22 (279285 upstream) : None (None downstream)																							CCCCTGCCCGCCCCTTCCCCC	0.632													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13489142	13489143	+	IGR	INS	-	G	G			TCGA-FY-A3I4-01A-11D-A21A-08	TCGA-FY-A3I4-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	e087d096-3086-4705-a308-75f12f9487eb	a40b24b5-781b-44cf-9d3c-499ddd16136e	g.chrY:13489142_13489143insG								None (None upstream) : None (None downstream)																							CTGGCGAGCCCGGAGTTTCTGC	0.683													9	365	---	---	---	---					
