Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC2A5	6518	broad.mit.edu	37	1	9117665	9117665	+	Silent	SNP	G	C	C			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr1:9117665G>C	uc001apo.2	-	3	427	c.135C>G	c.(133-135)CTC>CTG	p.L45L	SLC2A5_uc010nzz.1_Intron|SLC2A5_uc010oaa.1_Intron|SLC2A5_uc010oab.1_Silent_p.L45L|SLC2A5_uc010oac.1_Silent_p.L45L|SLC2A5_uc001app.3_Silent_p.L45L	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	45	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		ATTGTTGCATGAGCTAGGAGA	0.423000													13	16	---	---	---	---	0	0	0.038395	0	0
AKR7L	246181	broad.mit.edu	37	1	19597040	19597040	+	Missense_Mutation	SNP	C	T	T	rs114623957	by1000genomes	TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr1:19597040C>T	uc010ocx.1	-	4	412	c.412G>A	c.(412-414)GTG>ATG	p.V138M	AKR7L_uc010ocy.1_Missense_Mutation_p.V138M	NM_201252	NP_957704			aflatoxin B1 aldehyde reductase 3 isoform 1												0						CCAAGCTCCACGAACTTGCCC	0.617000													3	40	---	---	---	---	0	0	0.009096	0	0
FLG	2312	broad.mit.edu	37	1	152285714	152285714	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr1:152285714T>C	uc001ezu.1	-	3	1684	c.1648A>G	c.(1648-1650)ACA>GCA	p.T550A	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	550	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCTGGGATGTGGTGTGGCTG	0.567000									Ichthyosis				56	315	---	---	---	---	0	0	0.048971	0	0
PAQR6	79957	broad.mit.edu	37	1	156215632	156215632	+	Missense_Mutation	SNP	G	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr1:156215632G>T	uc001fnu.1	-	4	396	c.326C>A	c.(325-327)CCC>CAC	p.P109H	PAQR6_uc010phf.1_5'UTR|PAQR6_uc001fny.1_5'UTR|PAQR6_uc001fnv.1_Missense_Mutation_p.P85H|PAQR6_uc010phg.1_Missense_Mutation_p.P106H|PAQR6_uc001fnx.1_Missense_Mutation_p.P3H|PAQR6_uc001fnw.1_Missense_Mutation_p.P3H|PAQR6_uc001fnz.1_Missense_Mutation_p.P3H|PAQR6_uc010phh.1_Missense_Mutation_p.P109H|PAQR6_uc001foa.1_Missense_Mutation_p.P3H|PAQR6_uc001fob.1_RNA	NM_198406	NP_940798	Q6TCH4	PAQR6_HUMAN	progestin and adipoQ receptor family member VI	109	Cytoplasmic (Potential).					integral to membrane	receptor activity				0	Hepatocellular(266;0.158)					GCGCATGCGGGGCGACATGGA	0.697000													3	7	---	---	---	---	0.004672	0.00486667	0.004672	1	0
ZNF488	118738	broad.mit.edu	37	10	48371510	48371510	+	Missense_Mutation	SNP	C	G	G			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:48371510C>G	uc001jex.2	+	2	1140	c.978C>G	c.(976-978)TTC>TTG	p.F326L	ZNF488_uc001jey.2_Missense_Mutation_p.F219L	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	326	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGGAGCACTTCCGGGAGCGCC	0.622000													14	71	---	---	---	---	0	0	0.033300	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98416610	98416610	+	Missense_Mutation	SNP	G	A	A			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:98416610G>A	uc001kmq.2	-	3	640	c.512C>T	c.(511-513)ACG>ATG	p.T171M	PIK3AP1_uc001kmp.2_Translation_Start_Site	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	171						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		TGAAGTCACCGTCGGCAGGTT	0.577000													4	63	---	---	---	---	0	0	0.009096	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													4	9	---	---	---	---	0	0	0.009096	0	0
DCLRE1A	9937	broad.mit.edu	37	10	115595057	115595057	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:115595057C>T	uc001law.2	-	9	3895	c.2977G>A	c.(2977-2979)GAA>AAA	p.E993K		NM_014881	NP_055696	Q6PJP8	DCR1A_HUMAN	DNA cross-link repair 1A	993					cell division|mitosis	nucleus	hydrolase activity			skin(2)	2				Epithelial(162;0.0157)|all cancers(201;0.0171)		CTGCTGTGTTCACTGTAAGGA	0.343000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					6	34	---	---	---	---	0	0	0.021553	0	0
LGR4	55366	broad.mit.edu	37	11	27390293	27390293	+	Silent	SNP	G	A	A			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr11:27390293G>A	uc001mrj.3	-	18	2462	c.1977C>T	c.(1975-1977)CTC>CTT	p.L659L	LGR4_uc001mrk.3_Silent_p.L635L	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	659	Cytoplasmic (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						GGAACTGTTTGAGATGATTGC	0.413000													13	62	---	---	---	---	0	0	0.024245	0	0
OPCML	4978	broad.mit.edu	37	11	132812836	132812836	+	Missense_Mutation	SNP	T	C	C			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr11:132812836T>C	uc001qgs.2	-	1	202	c.152A>G	c.(151-153)GAG>GGG	p.E51G	OPCML_uc001qgu.2_Missense_Mutation_p.E44G|OPCML_uc010sck.1_Missense_Mutation_p.E51G|OPCML_uc001qgt.2_Missense_Mutation_p.E51G|OPCML_uc010scl.1_Missense_Mutation_p.E10G	NM_002545	NP_002536	Q14982	OPCM_HUMAN	opioid binding protein/cell adhesion	51	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|integral to plasma membrane	opioid receptor activity			ovary(2)|skin(1)	3	all_hematologic(175;0.019)	all_cancers(12;5.86e-24)|all_epithelial(12;2.65e-17)|all_lung(97;2.89e-05)|Lung NSC(97;6.16e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0269)|all_neural(223;0.0326)|Esophageal squamous(93;0.129)		all cancers(11;4.61e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.012)		GGTGGCGCTCTCCCCCTGCCG	0.667000													3	31	---	---	---	---	0	0	0.009096	0	0
ADAM6	8755	broad.mit.edu	37	14	106375813	106375813	+	Splice_Site	SNP	C	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr14:106375813C>T	uc010tyt.1	-	2720		c.45925_splice	c.e2720-1		KIAA0125_uc001ysq.2_Intron|KIAA0125_uc001ysr.2_Intron|KIAA0125_uc001yss.2_Intron					Parts of antibodies, mostly variable regions.												0						CAGAATCCGACGGGGCGCCCT	0.627000													16	26	---	---	---	---	0	0	0.049695	0	0
LOC728323	728323	broad.mit.edu	37	2	243056808	243056808	+	RNA	SNP	T	A	A	rs144220014	by1000genomes	TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr2:243056808T>A	uc010zpd.1	+	3		c.269T>A			LOC728323_uc010zpe.1_RNA|LOC728323_uc010zpf.1_RNA|LOC728323_uc010zpg.1_Intron	NR_024437				Homo sapiens cDNA FLJ60027 complete cds, moderately similar to F-box only protein 25.												0						ATAGCGAAGATGGAGAAATAC	0.279000													3	33	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	3	133894572	133894572	+	IGR	SNP	G	C	C			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr3:133894572G>C								RYK (-75014 upstream) : RYK (-18594 downstream)																							TCTCTGGAGAGGGCATTGTCT	0.408000													10	60	---	---	---	---	0	0	0.069234	0	0
CORIN	10699	broad.mit.edu	37	4	47644047	47644047	+	Silent	SNP	C	A	A			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr4:47644047C>A	uc003gxm.2	-	16	2181	c.2088G>T	c.(2086-2088)GTG>GTT	p.V696V	CORIN_uc011bzf.1_Silent_p.V557V|CORIN_uc011bzg.1_Silent_p.V629V	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	696	Extracellular (Potential).|SRCR.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						AAGAGGAGTTCACATTTATAG	0.448000													9	31	---	---	---	---	2.80697e-09	3.18974e-09	0.080935	1	0
BMP3	651	broad.mit.edu	37	4	81967362	81967362	+	Missense_Mutation	SNP	C	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr4:81967362C>T	uc003hmg.3	+	2	1107	c.787C>T	c.(787-789)CGG>TGG	p.R263W		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	263					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						ACAGGGACACCGGAATTTTCC	0.498000													4	59	---	---	---	---	0	0	0.009096	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239340	5239340	+	Missense_Mutation	SNP	C	A	A			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr5:5239340C>A	uc003jdl.2	+	15	2369	c.2231C>A	c.(2230-2232)GCC>GAC	p.A744D	ADAMTS16_uc003jdk.1_Missense_Mutation_p.A744D|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	744	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AATAACTCAGCCTGCACGATT	0.522000													23	83	---	---	---	---	2.50493e-22	3.13116e-22	0.099896	1	0
MRAP2	112609	broad.mit.edu	37	6	84799015	84799015	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr6:84799015C>T	uc003pkg.3	+	4	623	c.433C>T	c.(433-435)CAG>TAG	p.Q145*	MRAP2_uc010kbo.2_Nonsense_Mutation_p.Q59*	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	145					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						CGTCCAACTCCAGGAAGCCAT	0.522000													25	25	---	---	---	---	0	0	0.108266	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				24	53	---	---	---	---	0	0	0.099896	0	0
COL22A1	169044	broad.mit.edu	37	8	139662001	139662001	+	Silent	SNP	A	G	G			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr8:139662001A>G	uc003yvd.2	-	46	3801	c.3354T>C	c.(3352-3354)CCT>CCC	p.P1118P	COL22A1_uc011ljo.1_Silent_p.P398P	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1118	Pro-rich.|Gly-rich.|Collagen-like 10.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGGGGCCAGGAGGGCAGTCAT	0.527000										HNSCC(7;0.00092)			5	29	---	---	---	---	0	0	0.021553	0	0
FGD1	2245	broad.mit.edu	37	X	54492189	54492189	+	Missense_Mutation	SNP	C	A	A			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chrX:54492189C>A	uc004dtg.2	-	7	2171	c.1437G>T	c.(1435-1437)GAG>GAT	p.E479D	FGD1_uc011moi.1_Missense_Mutation_p.E237D	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	479	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TGTTGACCAGCTCCACGGCCC	0.547000													13	24	---	---	---	---	3.03607e-14	3.61437e-14	0.093190	1	0
Unknown	0	broad.mit.edu	37	1	244013597	244013598	+	IGR	INS	-	GGC	GGC	rs34490111		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr1:244013597_244013598insGGC								AKT3 (7044 upstream) : ZNF238 (200963 downstream)																							ctggagcgggaggcggcggcgg	0.178													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384710	42384710	+	IGR	DEL	T	-	-	rs151222414		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42384710delT								None (None upstream) : LOC441666 (442605 downstream)																							ttgaacggaatcgaatggaat	0.000													21	2221	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384716	42384716	+	IGR	DEL	G	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42384716delG								None (None upstream) : LOC441666 (442599 downstream)																							ggaatcgaatggaatcatcat	0.000													28	2310	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42387303	42387303	+	IGR	DEL	C	-	-	rs139851125		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42387303delC								None (None upstream) : LOC441666 (440012 downstream)																							aatcattgaacagaattgaat	0.000													9	2503	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42387774	42387774	+	IGR	DEL	C	-	-	rs141701904		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42387774delC								None (None upstream) : LOC441666 (439541 downstream)																							aatcattgaacggaattgaat	0.000													36	1911	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42389493	42389493	+	IGR	DEL	C	-	-	rs34162163		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42389493delC								None (None upstream) : LOC441666 (437822 downstream)																							aatcattgaacggaattgaat	0.025													10	533	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													22	5208	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													22	1850	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400616	42400616	+	IGR	DEL	A	-	-	rs1839350		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42400616delA								None (None upstream) : LOC441666 (426699 downstream)																							ctcagaaactactttgtgatg	0.000													11	2714	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597165	42597165	+	IGR	DEL	G	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr10:42597165delG								None (None upstream) : LOC441666 (230150 downstream)																							ggaatcgaatggaatcatcat	0.020													15	4027	---	---	---	---					
NRXN2	9379	broad.mit.edu	37	11	64375285	64375286	+	Frame_Shift_Ins	INS	-	G	G			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr11:64375285_64375286insG	uc001oap.2	-	8	1894_1895	c.1383_1384insC	c.(1381-1386)CCCACGfs	p.P461fs	NRXN2_uc001oar.2_Frame_Shift_Ins_p.P1507fs|NRXN2_uc001oas.2_Frame_Shift_Ins_p.P1437fs|NRXN2_uc001oao.2_Frame_Shift_Ins_p.P147fs|NRXN2_uc001oaq.2_Frame_Shift_Ins_p.P1174fs	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	461_462	Extracellular (Potential).				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TCGTCGTCCGTGGGGGGGAGGC	0.693													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	27287821	27287821	+	IGR	DEL	T	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr12:27287821delT								C12orf71 (52366 upstream) : STK38L (109257 downstream)																							GGATTATTCCTTTTTTTGTTC	0.328													2	4	---	---	---	---					
MCTP2	55784	broad.mit.edu	37	15	94841381	94841381	+	5'Flank	DEL	T	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr15:94841381delT	uc002btj.2	+						MCTP2_uc010urg.1_Intron|MCTP2_uc002bti.2_Intron|MCTP2_uc010boj.2_Intron|MCTP2_uc010bok.2_5'Flank|MCTP2_uc002btg.3_Intron|MCTP2_uc002bth.3_Intron	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1						calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AAGGTTCATGttttttttttt	0.308													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46391542	46391542	+	IGR	DEL	C	-	-	rs111846833		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr16:46391542delC								None (None upstream) : ANKRD26P1 (111707 downstream)																							TTAATGATTGCTTTGTTttca	0.045													7	533	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46406908	46406910	+	IGR	DEL	ATG	-	-	rs142002187		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr16:46406908_46406910delATG								None (None upstream) : ANKRD26P1 (96339 downstream)																							tcgattccatatgatgatgactc	0.000													20	538	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253230	22253231	+	IGR	INS	-	T	T	rs4262978		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr17:22253230_22253231insT								FLJ36000 (340160 upstream) : None (None downstream)																							ttgcattcaacccacagtgttg	0.000													7	2620	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253249	22253249	+	IGR	DEL	C	-	-	rs140540869		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr17:22253249delC								FLJ36000 (340179 upstream) : None (None downstream)																							ttgaacctttctttgatagtt	0.000													13	1946	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18517211	18517211	+	IGR	DEL	C	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr18:18517211delC								None (None upstream) : ROCK1 (12494 downstream)																							gaaatgtcttcccataaaaac	0.000													10	1085	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732326	27732329	+	IGR	DEL	TGTT	-	-	rs74211006		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr19:27732326_27732329delTGTT								None (None upstream) : LOC148189 (549073 downstream)																							ggaaacactctgtttgtaaaatct	0.000													22	713	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27733247	27733247	+	IGR	DEL	A	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr19:27733247delA								None (None upstream) : LOC148189 (548155 downstream)																							aactagacagaatcattctca	0.000													12	1304	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736410	27736410	+	IGR	DEL	A	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr19:27736410delA								None (None upstream) : LOC148189 (544992 downstream)																							taaagtctgcaagtggatatt	0.000													8	1125	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736453	27736453	+	IGR	DEL	T	-	-	rs4567863		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr19:27736453delT								None (None upstream) : LOC148189 (544949 downstream)																							tggaaacgggtttttttcttg	0.000													20	1254	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738432	27738435	+	IGR	DEL	TGTT	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr19:27738432_27738435delTGTT								None (None upstream) : LOC148189 (542967 downstream)																							ggaaacactctgtttgtaaagtct	0.000													9	864	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr19:27738491delT								None (None upstream) : LOC148189 (542911 downstream)																							tggaaacgggtttttttcatg	0.000													116	1983	---	---	---	---					
TPTE	7179	broad.mit.edu	37	21	11014968	11014970	+	RNA	DEL	TCT	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr21:11014968_11014970delTCT	uc002yis.1	-	7		c.1476_1478delAGA						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAGAATAAGATCTTCTTCTCTAT	0.355													11	48	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44756915	44756916	+	IGR	INS	-	CAC	CAC	rs145388929		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr21:44756915_44756916insCAC								CRYAA (164002 upstream) : SIK1 (77482 downstream)																							accaccaccatcaccaccacca	0.000													3	5	---	---	---	---					
ITIH1	3697	broad.mit.edu	37	3	52820397	52820397	+	Frame_Shift_Del	DEL	C	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr3:52820397delC	uc003dfs.2	+	13	1704	c.1680delC	c.(1678-1680)AACfs	p.N560fs	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Frame_Shift_Del_p.N161fs|ITIH1_uc010hmo.1_Frame_Shift_Del_p.N114fs|ITIH1_uc003dfu.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	560	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		TGCTGGAGAACCACGTCGAGC	0.602													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	120952551	120952552	+	IGR	INS	-	A	A	rs151178703	by1000genomes	TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr5:120952551_120952552insA								PRR16 (929589 upstream) : FTMT (235098 downstream)																							TGGATACTGACAAAAAAAAAAG	0.297													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58776848	58776848	+	IGR	DEL	T	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr6:58776848delT								GUSBL2 (489124 upstream) : None (None downstream)																							tgagacaccgtttttgtagaa	0.000													14	945	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58777055	58777059	+	IGR	DEL	TGGAG	-	-	rs60788840		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr6:58777055_58777059delTGGAG								GUSBL2 (489331 upstream) : None (None downstream)																							ttggacctattggaggccttctttg	0.000													9	504	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778285	58778285	+	IGR	DEL	C	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr6:58778285delC								GUSBL2 (490561 upstream) : None (None downstream)																							atcttataaacccagacagaa	0.000													14	878	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778954	58778954	+	IGR	DEL	C	-	-	rs67064770		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr6:58778954delC								GUSBL2 (491230 upstream) : None (None downstream)																							aacgggatttcttcgtataaa	0.000													7	894	---	---	---	---					
SOBP	55084	broad.mit.edu	37	6	107854783	107854784	+	Frame_Shift_Ins	INS	-	CTGCCGA	CTGCCGA			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr6:107854783_107854784insCTGCCGA	uc003prx.2	+	4	1046_1047	c.542_543insCTGCCGA	c.(541-543)GCCfs	p.A181fs	SOBP_uc003prw.1_Frame_Shift_Ins_p.A181fs	NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	181							metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		TGCTTTGCGGCCTGCCGACGAG	0.559													15	95	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	2514977	2514977	+	IGR	DEL	C	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr7:2514977delC								CHST12 (40763 upstream) : LFNG (44502 downstream)																							TCAGTGCCAGCCCCCAGGGCC	0.672													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57929339	57929342	+	IGR	DEL	TTTG	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr7:57929339_57929342delTTTG								ZNF716 (396074 upstream) : None (None downstream)																							CACATTCTGATTTGTTTTTTGTAT	0.363													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61970311	61970311	+	IGR	DEL	A	-	-	rs4294064		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr7:61970311delA								None (None upstream) : LOC643955 (781361 downstream)																							cactgtttgtaaagtctgcaa	0.000													8	1186	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61970367	61970367	+	IGR	DEL	C	-	-	rs4718027		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr7:61970367delC								None (None upstream) : LOC643955 (781305 downstream)																							aacgggatttcttcattgaat	0.000													7	2777	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61970472	61970472	+	IGR	DEL	C	-	-	rs4302722		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr7:61970472delC								None (None upstream) : LOC643955 (781200 downstream)																							ttgaaacactctttttgcgga	0.000													12	1150	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	46846893	46846893	+	IGR	DEL	A	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr8:46846893delA								None (None upstream) : BEYLA (905615 downstream)																							gcctatggtgaaaaaggaaat	0.000													8	180	---	---	---	---					
ATP8B5P	158381	broad.mit.edu	37	9	35450411	35450411	+	RNA	DEL	T	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr9:35450411delT	uc010mkn.1	+	10		c.3261delT			ATP8B5P_uc010mko.2_RNA|ATP8B5P_uc010mkp.2_RNA|ATP8B5P_uc003zwu.2_Intron					Homo sapiens cDNA, FLJ17320.												0						TGACTTGAGGTTTTTTTTTCC	0.343													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68430022	68430025	+	IGR	DEL	CAAA	-	-	rs112735354		TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chr9:68430022_68430025delCAAA								FAM27B (635833 upstream) : MIR1299 (572214 downstream)																							ctcctgggctcaaacaatcctcct	0.074													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	10011935	10011936	+	IGR	INS	-	T	T			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chrY:10011935_10011936insT								TTTY22 (361081 upstream) : None (None downstream)																							GAAAAACTATCACTTGTTACTG	0.257													4	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842708	13842708	+	IGR	DEL	A	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chrY:13842708delA								None (None upstream) : TTTY15 (931590 downstream)																							gaatggaatcaacccgagtgg	0.000													8	1862	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13842715	13842715	+	IGR	DEL	G	-	-			TCGA-FY-A3R8-01A-11D-A21Z-08	TCGA-FY-A3R8-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	1f6894f5-6dc1-4d7f-8002-209b443ccedf	2a402e31-c85e-4bf9-8e25-0087ab122642	g.chrY:13842715delG								None (None upstream) : TTTY15 (931583 downstream)																							atcaacccgagtggaatggaa	0.000													7	1797	---	---	---	---					
