Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CREM	1390	broad.mit.edu	36	10	35525027	35525027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182721	exon1	c.C31T	p.L11F	.	.	.
LRRC18	474354	broad.mit.edu	36	10	49791555	49791555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	A	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001006939	exon1	c.C652T	p.R218W	.	.	.
ATM	472	broad.mit.edu	36	11	107626897	107626897	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000051	exon10	c.C1495G	p.Q499E	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109512815	109512815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033390	exon2	c.C239T	p.A80V	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912066	18912066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_147199	exon1	c.G842A	p.R281H	.	.	.
OR4D9	390199	broad.mit.edu	36	11	59038981	59038981	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004711	exon1	c.C20A	p.T7N	.	.	.
STIP1	10963	broad.mit.edu	36	11	63727573	63727573	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006819	exon13	c.C1462T	p.R488X	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85122865	85122865	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032943	exon7	c.T1152A	p.S384S	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94232420	94232420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_130847	exon9	c.G2027A	p.R676Q	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107113780	107113780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014653	exon2	c.G41A	p.R14Q	.	.	.
FBXW8	26259	broad.mit.edu	36	12	115950233	115950233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153348	exon11	c.G1670A	p.R557H	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124701189	124701189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052907	exon7	c.C1636T	p.R546W	.	.	.
ARHGDIB	397	broad.mit.edu	36	12	14986899	14986899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001175	exon6	c.G430T	p.G144C	.	.	.
ANO6	196527	broad.mit.edu	36	12	43982111	43982111	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025356	exon2	c.G118A	p.E40K	.	.	.
PRKAG1	5571	broad.mit.edu	36	12	47683049	47683049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002733	exon12	c.G896A	p.R299Q	.	.	.
RASA3	22821	broad.mit.edu	36	13	113811442	113811442	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007368	exon6	c.G513A	p.T171T	.	.	.
LHFP	10186	broad.mit.edu	36	13	38816122	38816122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005780	exon4	c.C554T	p.T185M	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699598	66699598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020403	exon2	c.C976T	p.H326Y	.	.	.
C14orf135	64430	broad.mit.edu	36	14	59651895	59651895	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022495	exon3	c.G618T	p.M206I	.	.	.
ESR2	2100	broad.mit.edu	36	14	63797100	63797100	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001437	exon5	c.C772T	p.L258L	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24665530	24665530	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001165037	exon3	c.C42A	p.N14K	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52095285	52095285	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080534	exon1	c.C2893G	p.P965A	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63013443	63013443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182703	exon9	c.C823T	p.R275W	.	.	.
STX4	6810	broad.mit.edu	36	16	30958470	30958470	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004604	exon9	c.G810T	p.R270S	.	.	.
CDH11	1009	broad.mit.edu	36	16	63562986	63562986	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001797	exon11	c.C1639G	p.R547G	.	.	.
CHST4	10164	broad.mit.edu	36	16	70129085	70129085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166395	exon2	c.G1004A	p.R335H	.	.	.
JPH3	57338	broad.mit.edu	36	16	86235533	86235533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020655	exon2	c.C551T	p.A184V	.	.	.
KSR1	8844	broad.mit.edu	36	17	22934151	22934151	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014238	exon5	c.A462C	p.P154P	.	.	.
GAS2L2	246176	broad.mit.edu	36	17	31098295	31098295	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139285	exon5	c.G938A	p.R313H	.	.	.
KRT38	8687	broad.mit.edu	36	17	36848987	36848987	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006771	exon3	c.C726T	p.H242H	.	.	.
SPATA20	64847	broad.mit.edu	36	17	45981534	45981534	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022827	exon6	c.A648T	p.R216S	.	.	.
TP53	7157	broad.mit.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.C742T	p.R248W	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.
TCEB3B	51224	broad.mit.edu	36	18	42814288	42814288	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016427	exon1	c.C1346A	p.A449D	.	.	.
SUGP2	10147	broad.mit.edu	36	19	18991027	18991027	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014884	exon4	c.C1741T	p.R581X	.	.	.
FBXO27	126433	broad.mit.edu	36	19	44209470	44209470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178820	exon5	c.C588T	p.H196H	.	.	.
CEACAM21	90273	broad.mit.edu	36	19	46775588	46775588	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033543	exon2	c.C261T	p.H87H	.	.	.
PSG4	5672	broad.mit.edu	36	19	48390459	48390459	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002780	exon5	c.T1116G	p.F372L	.	.	.
BAX	581	broad.mit.edu	36	19	54155926	54155926	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138763	exon4	c.G270T	p.W90C	.	.	.
PPFIA3	8541	broad.mit.edu	36	19	54334865	54334865	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003660	exon17	c.G2205A	p.A735A	.	.	.
EXOSC10	5394	broad.mit.edu	36	1	11065385	11065385	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001998	exon10	c.C1227G	p.L409L	.	.	.
EXOSC10	5394	broad.mit.edu	36	1	11070518	11070518	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001998	exon8	c.A871G	p.I291V	.	.	.
RHBG	57127	broad.mit.edu	36	1	154614732	154614732	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020407	exon4	c.G591T	p.S197S	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157178702	157178702	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198930	exon5	c.G864A	p.T288T	.	.	.
TPR	7175	broad.mit.edu	36	1	184563217	184563217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003292	exon40	c.G5887A	p.E1963K	.	.	.
MAST2	23139	broad.mit.edu	36	1	46269737	46269737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015112	exon24	c.G3080A	p.R1027H	.	.	.
PKN2	5586	broad.mit.edu	36	1	89045836	89045836	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006256	exon14	c.C1971T	p.F657F	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29977519	29977519	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008409	exon10	c.G712T	p.A238S	.	.	.
STX16	8675	broad.mit.edu	36	20	56677754	56677754	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003763	exon4	c.T332G	p.L111R	.	.	.
GNAS	2778	broad.mit.edu	36	20	56863494	56863494	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077490	exon1	c.G1592C	p.S531T	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44303456	44303456	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003274	exon6	c.C723T	p.D241D	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19486277	19486277	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_058004	exon14	c.A1534G	p.I512V	.	.	.
MALL	7851	broad.mit.edu	36	2	110202516	110202516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005434	exon3	c.C321T	p.A107A	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141360307	141360307	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018557	exon24	c.A3834G	p.R1278R	.	.	.
KYNU	8942	broad.mit.edu	36	2	143516118	143516118	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003937	exon14	c.G1305T	p.V435V	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175148292	175148292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077269	exon4	c.G244A	p.G82R	.	.	.
EHD3	30845	broad.mit.edu	36	2	31311113	31311113	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014600	exon1	c.G122T	p.R41L	.	.	.
UGP2	7360	broad.mit.edu	36	2	63963149	63963149	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001521	exon4	c.A268C	p.I90L	.	.	.
REG3A	5068	broad.mit.edu	36	2	79239332	79239332	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002580	exon3	c.C148A	p.H50N	.	.	.
NIT2	56954	broad.mit.edu	36	3	101556735	101556735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020202	exon10	c.G764A	p.R255H	.	.	.
CBLB	868	broad.mit.edu	36	3	106871797	106871797	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170662	exon18	c.C2659T	p.Q887X	.	.	.
C3orf59	151963	broad.mit.edu	36	3	193999568	193999568	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178496	exon2	c.T777C	p.D259D	.	.	.
PCYT1A	5130	broad.mit.edu	36	3	197481746	197481746	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005017	exon3	c.G54A	p.A18A	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64581945	64581945	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182920	exon19	c.C2698T	p.R900X	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120617059	120617059	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020754	exon12	c.3593delG	p.R1198fs	.	.	.
TUBB4Q	56604	broad.mit.edu	36	4	191141556	191141556	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020040	exon4	c.G419C	p.W140S	.	.	.
APC	324	broad.mit.edu	36	5	112156042	112156042	+	Nonsense_Mutation	SNP	C	T	T	rs62619935	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127510	exon8	c.C646T	p.R216X	.	.	.
APC	324	broad.mit.edu	36	5	112203111	112203115	+	Frame_Shift_Del	DEL	AAAAG	-	-	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	AAAAG	AAAAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.3867_3871del	p.1289_1291del	 APC,large_intestine,colon,Substitution - Nonsense,-1 	.	.
IGF2R	3482	broad.mit.edu	36	6	160374068	160374068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000876	exon9	c.G1150A	p.V384M	.	.	.
HIST1H2BM	8342	broad.mit.edu	36	6	27891004	27891004	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003521	exon1	c.C204T	p.N68N	.	.	.
RDBP	7936	broad.mit.edu	36	6	32030395	32030396	+	Silent	DNP	GA	TG	TG	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002904	exon7	c.657_658CA	.	.	.	.
KCNK17	89822	broad.mit.edu	36	6	39380385	39380385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031460	exon3	c.C377T	p.T126M	.	.	.
BAI3	577	broad.mit.edu	36	6	70001735	70001735	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001704	exon19	c.G2698T	p.A900S	.	.	.
DDC	1644	broad.mit.edu	36	7	50575216	50575216	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000790	exon3	c.C206T	p.T69M	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84535472	84535472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152754	exon5	c.C560T	p.P187L	.	.	.
MTSS1	9788	broad.mit.edu	36	8	125634538	125634538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014751	exon14	c.G2144A	p.S715N	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48869478	48869478	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081640	exon74	c.C10595G	p.P3532R	.	.	.
MFHAS1	9258	broad.mit.edu	36	8	8785223	8785223	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004225	exon1	c.A2756G	p.Y919C	.	.	.
EXOSC2	23404	broad.mit.edu	36	9	132560700	132560700	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014285	exon2	c.G123T	p.R41R	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34966636	34966636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015297	exon5	c.C748T	p.R250C	.	.	.
DOCK8	81704	broad.mit.edu	36	9	410430	410430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190458	exon29	c.G3570A	p.A1190A	.	.	.
IARS	3376	broad.mit.edu	36	9	94067201	94067201	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013417	exon16	c.C1531T	p.R511C	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650048	82650048	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3679-01A-02W-0900-09	TCGA-AA-3679-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000307	exon1	c.G60A	p.A20A	.	.	.
