Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LEPRE1	64175	broad.mit.edu	37	1	43228097	43228097	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:43228097C>T	uc001chv.2	-	2	628	c.515G>A	c.(514-516)GGC>GAC	p.G172D	LEPRE1_uc001chw.2_Missense_Mutation_p.G172D|LEPRE1_uc001chx.3_Missense_Mutation_p.G172D|LEPRE1_uc001chy.3_Missense_Mutation_p.G172D	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	172	TPR 2.				negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCAGGATTGCCCACGAAGAA	0.468000													5	255					0	0	0.014758	0	0
ELTD1	64123	broad.mit.edu	37	1	79402059	79402059	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:79402059T>C	uc001diq.3	-	7	954	c.798A>G	c.(796-798)AAA>AAG	p.K266K		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	266	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GATGAATATGTTTCATGTTAT	0.259000													3	54					0	0	0.004672	0	0
AMY2B	280	broad.mit.edu	37	1	104122036	104122036	+	Missense_Mutation	SNP	G	A	A	rs143243690		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:104122036G>A	uc001duq.2	+	12	2066	c.1450G>A	c.(1450-1452)GTT>ATT	p.V484I	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.V484I|AMY2B_uc001dus.1_Intron	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	484					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TAAAATCTACGTTTCTGACGA	0.323000													24	124					0	0	0.021523	0	0
LRIG2	9860	broad.mit.edu	37	1	113616063	113616063	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:113616063A>T	uc001edf.1	+	1	233	c.35A>T	c.(34-36)CAG>CTG	p.Q12L	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	12						cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		CCGGAGGAGCAGTTGCTGGGG	0.642000											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	167	300					0	0	0.014410	0	0
LASS2	29956	broad.mit.edu	37	1	150940937	150940937	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:150940937C>T	uc001evy.2	-	3	612	c.225G>A	c.(223-225)CGG>CGA	p.R75R	LASS2_uc001evz.2_Silent_p.R75R|LASS2_uc009wmh.2_5'UTR	NM_181746	NP_859530	Q96G23	CERS2_HUMAN	LAG1 longevity assurance 2	75	Cytoplasmic (Potential).|Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0	all_lung(15;8.07e-35)|Lung NSC(24;7.93e-31)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GTGCCCGCAGCCGAGTTTTCT	0.557000													16	106					0	0	0.004990	0	0
KIAA0907	22889	broad.mit.edu	37	1	155899153	155899153	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:155899153C>G	uc001fmi.1	-	4	422	c.398G>C	c.(397-399)AGT>ACT	p.S133T	KIAA0907_uc001fmj.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrk.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrl.1_RNA|KIAA0907_uc001fml.1_Missense_Mutation_p.S133T|KIAA0907_uc001fmm.2_Missense_Mutation_p.S133T|KIAA0907_uc001fmo.2_Missense_Mutation_p.S133T	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	133											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TGCAGCCCCACTAAGTCGGCT	0.408000													50	111					0	0	0.014410	0	0
USF1	7391	broad.mit.edu	37	1	161011569	161011569	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:161011569T>C	uc001fxi.2	-	6	539	c.344A>G	c.(343-345)CAC>CGC	p.H115R	F11R_uc010pjw.1_5'Flank|F11R_uc001fxf.3_5'Flank|TSTD1_uc010pjx.1_5'Flank|TSTD1_uc009wtw.2_5'Flank|TSTD1_uc001fxh.3_5'Flank|USF1_uc001fxj.2_Missense_Mutation_p.H56R	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	115					cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GTAAGTATAGTGCGTCTCAGC	0.572000											OREG0013936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	140					0	0	0.012319	0	0
TMCC2	9911	broad.mit.edu	37	1	205238546	205238546	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:205238546G>T	uc001hbz.1	+	4	1660	c.1216G>T	c.(1216-1218)GTC>TTC	p.V406F	TMCC2_uc010prf.1_Missense_Mutation_p.V328F|TMCC2_uc001hca.2_Missense_Mutation_p.V181F|TMCC2_uc001hcb.1_Missense_Mutation_p.V166F|TMCC2_uc001hcc.1_Missense_Mutation_p.V27F|TMCC2_uc001hcd.2_Missense_Mutation_p.V173F	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	406						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GGTGGAGGGCGTCAAGGGCAG	0.682000													39	52					1.32136e-16	1.53277e-16	0.008740	1	0
PYROXD2	84795	broad.mit.edu	37	10	100167696	100167696	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:100167696A>G	uc001kpc.2	-	3	292	c.206T>C	c.(205-207)ATC>ACC	p.I69T	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Missense_Mutation_p.I69T	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	69	FAD (Potential).						oxidoreductase activity			central_nervous_system(1)	1						TGCACCCCCGATCACATGGCG	0.627000													11	22					0	0	0.013537	0	0
COL17A1	1308	broad.mit.edu	37	10	105793764	105793764	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:105793764A>G	uc001kxr.2	-	52	4264	c.4095T>C	c.(4093-4095)GCT>GCC	p.A1365A	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1365	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CAGCAAAGTCAGCTCCCAATA	0.587000													44	125					0	0	0.014410	0	0
PTPRE	5791	broad.mit.edu	37	10	129859261	129859261	+	Silent	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:129859261C>A	uc001lkb.2	+	8	849	c.570C>A	c.(568-570)ATC>ATA	p.I190I	PTPRE_uc009yat.2_Silent_p.I201I|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.I190I|PTPRE_uc001lkd.2_Silent_p.I132I|PTPRE_uc010quq.1_Silent_p.I91I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	190	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CAGACTACATCAATGCTTCCT	0.428000													58	109					6.09941e-20	7.2197e-20	0.014410	1	0
PAOX	196743	broad.mit.edu	37	10	135193909	135193909	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:135193909C>T	uc001lmv.2	+	2	668	c.588C>T	c.(586-588)GGC>GGT	p.G196G	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Silent_p.G196G|PAOX_uc001lmy.2_Silent_p.G196G|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_Intron|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_Intron	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	334					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		GTGTGAGCGGCACCCACAGCA	0.622000													10	92					0	0	0.006214	0	0
HPX	3263	broad.mit.edu	37	11	6453151	6453151	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr11:6453151G>C	uc001mdg.2	-	8	993	c.932C>G	c.(931-933)GCC>GGC	p.A311G	HPX_uc001mdf.2_Missense_Mutation_p.A57G|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	311	Hemopexin-like 5.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CCAGGAAAAGGCAGCATCCAC	0.542000													101	206					0	0	0.014410	0	0
ZNF214	7761	broad.mit.edu	37	11	7021930	7021930	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr11:7021930C>T	uc001mfa.2	-	3	1287	c.984G>A	c.(982-984)GAG>GAA	p.E328E	ZNF214_uc010ray.1_Silent_p.E328E|ZNF214_uc009yfh.1_Silent_p.E328E	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	328					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TATAGAATTTCTCTTCTGTGT	0.383000													3	20					0	0	0.004672	0	0
LOC642846	642846	broad.mit.edu	37	12	9463773	9463773	+	RNA	SNP	G	A	A	rs111854872	by1000genomes	TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:9463773G>A	uc010sgp.1	+	21		c.2402G>A			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						TAACCTGTGCGGTGTGGTTTC	0.627000													6	188					0	0	0.020292	0	0
GYS2	2998	broad.mit.edu	37	12	21757442	21757442	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:21757442G>T	uc001rfb.2	-	1	340	c.85C>A	c.(85-87)CTG>ATG	p.L29M		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	29					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCAAAGAGCAGTAACTCCTCC	0.493000													12	10					9.05144e-12	1.01939e-11	0.016723	1	0
TSFM	10102	broad.mit.edu	37	12	58177005	58177005	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:58177005C>T	uc001sqi.2	+	2	219	c.170C>T	c.(169-171)ACA>ATA	p.T57I	TSFM_uc010sse.1_5'UTR|TSFM_uc001sqh.2_Missense_Mutation_p.T57I|TSFM_uc010ssf.1_Missense_Mutation_p.T57I	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	57					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CGGCGGAAAACAGGCTACTCC	0.582000											OREG0021954	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	99	329					0	0	0.014410	0	0
CCDC63	160762	broad.mit.edu	37	12	111321841	111321841	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:111321841G>C	uc001trv.1	+	8	1056	c.861G>C	c.(859-861)AAG>AAC	p.K287N	CCDC63_uc010sye.1_Missense_Mutation_p.K247N|CCDC63_uc001trw.1_Missense_Mutation_p.K202N	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	287	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TAGCTCTCAAGGCAAAGAAGC	0.488000													238	225					0	0	0.014410	0	0
UBC	7316	broad.mit.edu	37	12	125397269	125397269	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:125397269G>A	uc001ugs.3	-	2	1497	c.1049C>T	c.(1048-1050)GCC>GTC	p.A350V	UBC_uc001ugr.2_Intron|UBC_uc001ugu.1_Missense_Mutation_p.A350V|UBC_uc001ugt.2_Missense_Mutation_p.A350V|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Missense_Mutation_p.A198V	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	350	Ubiquitin-like 5.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		CTGTTTTCCGGCAAAGATCAA	0.522000													7	725					0	0	0.001984	0	0
POSTN	10631	broad.mit.edu	37	13	38154716	38154716	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr13:38154716T>G	uc001uwo.3	-	11	1629	c.1511A>C	c.(1510-1512)AAA>ACA	p.K504T	POSTN_uc010tet.1_Missense_Mutation_p.K32T|POSTN_uc001uwp.3_Missense_Mutation_p.K504T|POSTN_uc001uwr.2_Missense_Mutation_p.K504T|POSTN_uc001uwq.2_Missense_Mutation_p.K504T|POSTN_uc010teu.1_Missense_Mutation_p.K504T|POSTN_uc010tev.1_Missense_Mutation_p.K504T|POSTN_uc010tew.1_Missense_Mutation_p.K504T|POSTN_uc010tex.1_Missense_Mutation_p.K419T	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	504	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CTTATCTTGTTTTAACTTTTC	0.438000													22	47					0	0	0.018920	0	0
PCDH20	64881	broad.mit.edu	37	13	61987658	61987658	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr13:61987658A>G	uc001vid.3	-	2	938	c.574T>C	c.(574-576)TTT>CTT	p.F192L	PCDH20_uc010thj.1_Missense_Mutation_p.F192L	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	165	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ACCTTCACAAACCTGAAGTAT	0.532000													14	210					0	0	0.004990	0	0
MYH7	4625	broad.mit.edu	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr14:23886422C>T	uc001wjx.2	-	32	4565	c.4459G>A	c.(4459-4461)GCC>ACC	p.A1487T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1487	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCCTCATAGGCGTTCTTGAGT	0.597000													135	296					0	0	0.014410	0	0
BEGAIN	57596	broad.mit.edu	37	14	101005213	101005213	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr14:101005213C>T	uc010txa.1	-	6	1021	c.875G>A	c.(874-876)GGC>GAC	p.G292D	BEGAIN_uc001yhp.2_Missense_Mutation_p.G228D|BEGAIN_uc001yhq.2_Missense_Mutation_p.G292D	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	292						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				GGGCAGTGAGCCTGCGTAGCT	0.701000													3	25					0	0	0.009096	0	0
ADAM6	8755	broad.mit.edu	37	14	106791229	106791229	+	RNA	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr14:106791229C>T	uc010tyt.1	-	386		c.14389G>A								Parts of antibodies, mostly variable regions.												0						AATCCAGAGGCTGCACAGGAG	0.587000													72	345					0	0	0.014410	0	0
PLCB2	5330	broad.mit.edu	37	15	40594160	40594160	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:40594160T>A	uc001zld.2	-	7	881	c.580A>T	c.(580-582)AAA>TAA	p.K194*	PLCB2_uc010bbo.2_Nonsense_Mutation_p.K194*|PLCB2_uc010ucm.1_Nonsense_Mutation_p.K194*|PLCB2_uc001zle.3_Nonsense_Mutation_p.K194*	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	194					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCACTCACTTTGCCTTTGGGG	0.582000													39	82					0	0	0.011902	0	0
GLDN	342035	broad.mit.edu	37	15	51693835	51693835	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:51693835G>A	uc002aba.2	+	9	1242	c.1073G>A	c.(1072-1074)GGC>GAC	p.G358D	GLDN_uc002abb.2_Missense_Mutation_p.G234D	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	358	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		CTTCTGAATGGCAGTTACACG	0.483000											OREG0023125	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	79	150					0	0	0.014410	0	0
VPS13C	54832	broad.mit.edu	37	15	62221845	62221845	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:62221845C>G	uc002agz.2	-	51	6215	c.6141G>C	c.(6139-6141)AAG>AAC	p.K2047N	VPS13C_uc002aha.2_Missense_Mutation_p.K2004N|VPS13C_uc002ahb.1_Missense_Mutation_p.K2047N|VPS13C_uc002ahc.1_Missense_Mutation_p.K2004N	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2047					protein localization					ovary(2)	2						ATACATACAGCTTGTCAAGAA	0.368000													13	35					0	0	0.013537	0	0
CALML4	91860	broad.mit.edu	37	15	68497600	68497600	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:68497600T>G	uc002arb.2	-	1	849	c.115A>C	c.(115-117)AGC>CGC	p.S39R	CALML4_uc002arc.2_Missense_Mutation_p.S39R|CALML4_uc002ard.2_RNA|CALML4_uc002are.2_RNA|CALML4_uc010bhz.2_RNA	NM_033429	NP_219501	Q96GE6	CALL4_HUMAN	calmodulin-like 4 isoform 1	39							calcium ion binding				0						GGGCCTCGGCTGCTACCCGTG	0.612000													37	109					0	0	0.014410	0	0
MYO9A	4649	broad.mit.edu	37	15	72192125	72192125	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:72192125T>G	uc002atl.3	-	24	3846	c.3373A>C	c.(3373-3375)AGA>CGA	p.R1125R	MYO9A_uc010biq.2_Silent_p.R745R|MYO9A_uc002atn.1_Silent_p.R1106R|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1125	IQ 4.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GCTTTCCATCTTGCTTGTATG	0.438000													19	42					0	0	0.010504	0	0
NEO1	4756	broad.mit.edu	37	15	73590762	73590762	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:73590762G>A	uc002avm.3	+	27	4117	c.3975G>A	c.(3973-3975)CAG>CAA	p.Q1325Q	NEO1_uc010ukx.1_Silent_p.Q1314Q|NEO1_uc010uky.1_Silent_p.Q1272Q|NEO1_uc010ukz.1_Silent_p.Q738Q|NEO1_uc002avn.3_Silent_p.Q963Q	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1325	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CTGATCACCAGGACCCTGAAG	0.537000													4	177					0	0	0.009096	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84581896	84581896	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:84581896C>T	uc002bjz.3	+	16	1977	c.1753C>T	c.(1753-1755)CAG>TAG	p.Q585*	ADAMTSL3_uc010bmt.1_Nonsense_Mutation_p.Q585*|ADAMTSL3_uc010bmu.1_Nonsense_Mutation_p.Q585*	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	585	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCGGGTGTGCAGGTCCGTGA	0.582000													82	170					0	0	0.014410	0	0
BTBD12	84464	broad.mit.edu	37	16	3641173	3641173	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:3641173C>G	uc002cvp.2	-	12	3093	c.2466G>C	c.(2464-2466)ATG>ATC	p.M822I		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	822	Potential.|Interaction with PLK1 and TERF2-TERF2IP.|Glu-rich.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CATCTGCCCACATTGACCTCA	0.468000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				135	288					0	0	0.014410	0	0
SMG1	23049	broad.mit.edu	37	16	18844471	18844471	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:18844471G>A	uc002dfm.2	-	51	8946	c.8583C>T	c.(8581-8583)TTC>TTT	p.F2861F	SMG1_uc010bwb.2_Silent_p.F2721F|SMG1_uc010bwa.2_Silent_p.F1592F	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2861					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TGATTTGCCGGAAATTCGAAT	0.338000													8	14					0	0	0.006214	0	0
SRCAP	10847	broad.mit.edu	37	16	30732089	30732089	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:30732089C>A	uc002dze.1	+	20	3428	c.3043C>A	c.(3043-3045)CCA>ACA	p.P1015T	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P872T|SRCAP_uc010bzz.1_Missense_Mutation_p.P585T	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1015	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGTGAACAACCCACGGGCGCC	0.602000													102	193					8.43681e-56	1.00894e-55	0.014410	1	0
CNGB1	1258	broad.mit.edu	37	16	57984372	57984372	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:57984372G>A	uc002emt.2	-	13	1012	c.947C>T	c.(946-948)GCC>GTC	p.A316V	CNGB1_uc010cdh.2_Missense_Mutation_p.A310V	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	316					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						ATCCTGGTGGGCATCCTCCCA	0.552000													5	224					0	0	0.014758	0	0
ZZEF1	23140	broad.mit.edu	37	17	3953114	3953114	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:3953114C>T	uc002fxe.2	-	37	5967	c.5903G>A	c.(5902-5904)GGG>GAG	p.G1968E	ZZEF1_uc002fxh.2_Missense_Mutation_p.G282E|ZZEF1_uc002fxi.2_Missense_Mutation_p.G203E|ZZEF1_uc002fxj.1_Missense_Mutation_p.G581E	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1968							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTCGAGTCCCCATCTGGCAA	0.498000													27	165					0	0	0.014410	0	0
KCTD11	147040	broad.mit.edu	37	17	7256830	7256830	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:7256830T>G	uc002gge.3	+	1	1623	c.569T>G	c.(568-570)GTG>GGG	p.V190G	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	190					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CGGCGGGAGGTGGTGGGCACC	0.692000													6	70					0	0	0.012319	0	0
POLR2A	5430	broad.mit.edu	37	17	7402446	7402446	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:7402446G>A	uc002ghf.3	+	9	1658	c.1424G>A	c.(1423-1425)CGC>CAC	p.R475H	POLR2A_uc002ghe.2_Missense_Mutation_p.R475H	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	475					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CATCGGGTCCGCATTCTCCCA	0.562000													7	477					0	0	0.001984	0	0
LOC284100	284100	broad.mit.edu	37	17	36214775	36214775	+	RNA	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:36214775G>T	uc002hom.1	-	2		c.184C>A			LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGCCAGTGGTAGCTGCTGG	0.353000													11	14					1.67772e-17	1.96582e-17	0.010729	1	0
QRICH2	84074	broad.mit.edu	37	17	74283337	74283337	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:74283337T>A	uc002jrd.1	-	7	3629	c.3449A>T	c.(3448-3450)CAA>CTA	p.Q1150L	QRICH2_uc010wsz.1_Missense_Mutation_p.Q1076L|QRICH2_uc010dgw.1_5'UTR	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1150	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GCCCCTGTCTTGGCTCTCCCT	0.567000													49	108					0	0	0.014410	0	0
TBCD	6904	broad.mit.edu	37	17	80888515	80888515	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:80888515G>C	uc002kfz.2	+	33	3239	c.3109G>C	c.(3109-3111)GAG>CAG	p.E1037Q	TBCD_uc002kfy.1_Missense_Mutation_p.E1037Q|TBCD_uc002kgc.2_Missense_Mutation_p.E182Q|TBCD_uc002kgd.2_Missense_Mutation_p.E29Q	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	1037					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CCTTCTGAATGAGAGGTGAGT	0.597000													31	96					0	0	0.015359	0	0
HDHD2	84064	broad.mit.edu	37	18	44662721	44662721	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr18:44662721T>C	uc002lcs.2	-	2	223	c.90A>G	c.(88-90)GAA>GAG	p.E30E	HDHD2_uc002lct.2_5'UTR	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	30							hydrolase activity				0						TTTTAAGAGCTTCCTGTGCGC	0.463000													46	97					0	0	0.014410	0	0
MYO5B	4645	broad.mit.edu	37	18	47500737	47500737	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr18:47500737C>T	uc002leb.2	-	10	1593	c.1305G>A	c.(1303-1305)GGG>GGA	p.G435G	MYO5B_uc002lec.1_Silent_p.G434G	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	435	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTCCAGGACCCCGATGAAGG	0.582000													39	95					0	0	0.006230	0	0
RFX2	5990	broad.mit.edu	37	19	6013026	6013026	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:6013026C>T	uc002meb.2	-	8	1139	c.870G>A	c.(868-870)ATG>ATA	p.M290I	RFX2_uc002mec.2_Missense_Mutation_p.M265I	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GCTGCTGCCGCATGGCCATGT	0.617000													133	193					0	0	0.014410	0	0
KIAA1543	57662	broad.mit.edu	37	19	7670197	7670197	+	Silent	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:7670197G>T	uc002mgv.3	+	2	335	c.234G>T	c.(232-234)CTG>CTT	p.L78L	KIAA1543_uc002mgu.3_Silent_p.L78L	NM_020902	NP_065953	Q9P1Y5	CAMP3_HUMAN	NEZHA isoform 2	78					epithelial cell-cell adhesion|microtubule anchoring|regulation of microtubule cytoskeleton organization|zonula adherens maintenance	cytoplasm|microtubule|zonula adherens	microtubule minus-end binding			pancreas(1)	1						CACGGCTGCTGCTCTCAGCCG	0.667000													12	155					3.45872e-05	3.8578e-05	0.004007	1	0
PSMC4	5704	broad.mit.edu	37	19	40486339	40486339	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:40486339T>C	uc002omq.2	+	9	1102	c.1065T>C	c.(1063-1065)TCT>TCC	p.S355S	PSMC4_uc002omr.2_Silent_p.S324S	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	355					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAACCTCTCTGAGGAGGTTG	0.517000													166	266					0	0	0.014410	0	0
GIPR	2696	broad.mit.edu	37	19	46184876	46184876	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:46184876C>G	uc002pcu.1	+	13	1266	c.1167C>G	c.(1165-1167)AGC>AGG	p.S389R	GIPR_uc002pct.1_Missense_Mutation_p.S389R|GIPR_uc010xxp.1_Missense_Mutation_p.S353R|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	389	Helical; Name=7; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		TCCTGGTCAGCGTCCTCTACT	0.662000													29	65					0	0	0.012213	0	0
FGF21	26291	broad.mit.edu	37	19	49261265	49261265	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:49261265C>A	uc002pkn.1	+	4	990	c.418C>A	c.(418-420)CAC>AAC	p.H140N	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.H140N	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	140					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GTCCGAAGCCCACGGCCTCCC	0.632000													140	215					5.13159e-70	6.20067e-70	0.014410	1	0
SIGLEC9	27180	broad.mit.edu	37	19	51633170	51633170	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:51633170C>G	uc002pvu.2	+	7	1293	c.1226C>G	c.(1225-1227)GCA>GGA	p.A409G	SIGLEC9_uc010yct.1_Intron	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	409	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GAACCTTGGGCAGAAGACAGT	0.502000													57	158					0	0	0.014410	0	0
FBXO11	80204	broad.mit.edu	37	2	48050458	48050458	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:48050458T>G	uc010fbl.2	-	12	1302	c.1188A>C	c.(1186-1188)GCA>GCC	p.A396A	FBXO11_uc002rwe.2_Silent_p.A396A|FBXO11_uc002rwf.2_Silent_p.A396A|FBXO11_uc002rwg.1_Silent_p.A396A|FBXO11_uc010fbk.2_5'UTR	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	480	PbH1 4.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTTCAAAGCCTGCTATCCTAT	0.373000													29	27					0	0	0.009535	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808956	48808956	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:48808956A>G	uc010yol.1	+	1	1231	c.1184A>G	c.(1183-1185)GAG>GGG	p.E395G	STON1_uc002rwo.3_Missense_Mutation_p.E395G|STON1_uc010fbm.2_Missense_Mutation_p.E395G|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.E395G|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.E395G	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	395					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACTGTGGAGGAGGAGCTGATG	0.433000													11	21					0	0	0.020292	0	0
IMMT	10989	broad.mit.edu	37	2	86371415	86371415	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:86371415T>G	uc002sqz.3	-	15	2641	c.2253A>C	c.(2251-2253)GGA>GGC	p.G751G	IMMT_uc002sqy.3_Silent_p.G492G|IMMT_uc002srb.3_Silent_p.G740G|IMMT_uc002sra.3_Silent_p.G750G|IMMT_uc010ytd.1_Silent_p.G739G|IMMT_uc010yte.1_Silent_p.G704G	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	751	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						CCTGAGTGGTTCCTATTCCTA	0.478000													53	65					0	0	0.014410	0	0
VWC2L	402117	broad.mit.edu	37	2	215440518	215440518	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:215440518G>T	uc002vet.2	+	4	773	c.643G>T	c.(643-645)GAA>TAA	p.E215*	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	215						extracellular region					0						TTCGAAACGTGAATGCCAAGG	0.458000													15	57					6.49762e-13	7.38945e-13	0.006122	1	0
GIGYF2	26058	broad.mit.edu	37	2	233681744	233681744	+	Splice_Site	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:233681744T>A	uc002vti.3	+	22	2707	c.2370_splice	c.e22+2	p.Q790_splice	GIGYF2_uc002vtg.2_Splice_Site_p.Q784_splice|GIGYF2_uc002vtj.3_Splice_Site_p.Q811_splice|GIGYF2_uc002vtk.3_Splice_Site_p.Q790_splice|GIGYF2_uc002vth.3_Splice_Site_p.Q784_splice|GIGYF2_uc010zmk.1_Splice_Site|GIGYF2_uc010zml.1_Splice_Site_p.Q621_splice|GIGYF2_uc002vtq.3_Splice_Site_p.Q123_splice	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b						cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGGAAACAGGTATGTATCTGG	0.468000													19	62					0	0	0.006122	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358000													3	22					0	0	0.004672	0	0
CD40	958	broad.mit.edu	37	20	44757638	44757638	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr20:44757638G>C	uc002xrg.1	+	9	870	c.793G>C	c.(793-795)GAT>CAT	p.D265H	CD40_uc002xrh.1_3'UTR|CD40_uc002xri.1_3'UTR|CD40_uc002xrj.1_RNA|CD40_uc002xrk.1_RNA|CD40_uc002xrl.1_RNA	NM_001250	NP_001241	P25942	TNR5_HUMAN	CD40 antigen isoform 1 precursor	265	Cytoplasmic (Potential).				B cell proliferation|cellular response to mechanical stimulus|inflammatory response|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein complex assembly	CD40 receptor complex|extracellular region	enzyme binding|receptor activity			lung(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)			Simvastatin(DB00641)	CACCCAGGAGGATGGCAAAGA	0.582000									Immune_Deficiency_with_Hyper-IgM				58	208					0	0	0.014410	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887763	47887763	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr20:47887763T>C	uc002xui.2	-	3	833	c.586A>G	c.(586-588)AGC>GGC	p.S196G		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	196							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATTTTGGAGCTACAAGCCTTC	0.448000													121	122					0	0	0.014410	0	0
C21orf99	149992	broad.mit.edu	37	21	14439208	14439208	+	RNA	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr21:14439208A>G	uc002yja.3	+	10		c.2726A>G				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AAGAGAAGAAATGCCAATATA	0.299000													4	41					0	0	0.001984	0	0
GNAZ	2781	broad.mit.edu	37	22	23438484	23438484	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:23438484A>G	uc002zwu.1	+	2	1139	c.602A>G	c.(601-603)GAC>GGC	p.D201G	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	201	GTP (By similarity).					endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		AAGATGGTGGACGTGGGGGGG	0.567000													91	275					0	0	0.014410	0	0
CABIN1	23523	broad.mit.edu	37	22	24447425	24447425	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:24447425T>A	uc002zzi.1	+	8	922	c.795T>A	c.(793-795)ATT>ATA	p.I265I	CABIN1_uc002zzj.1_Intron|CABIN1_uc002zzl.1_Silent_p.I265I|CABIN1_uc010guk.1_Silent_p.I220I|CABIN1_uc002zzk.1_Silent_p.I220I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	265					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGCAGCCCATTCCTTTCTTCA	0.577000													37	62					0	0	0.006230	0	0
DEPDC5	9681	broad.mit.edu	37	22	32193641	32193641	+	Nonsense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:32193641A>T	uc003als.2	+	13	965	c.823A>T	c.(823-825)AAA>TAA	p.K275*	DEPDC5_uc011als.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alu.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Nonsense_Mutation_p.K275*|DEPDC5_uc003alr.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alt.1_Nonsense_Mutation_p.K247*	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	275					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CGTAACCATTAAAAAACTCTT	0.428000													20	30					0	0	0.021523	0	0
SOX10	6663	broad.mit.edu	37	22	38374016	38374016	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:38374016C>T	uc003aun.1	-	3	833	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Silent_p.Q185Q	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	185						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CCGCCTCGCCCTGGGCGGCCT	0.682000													23	34					0	0	0.021523	0	0
TAB1	10454	broad.mit.edu	37	22	39771987	39771987	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:39771987A>C	uc003axr.2	+	2	1828	c.46A>C	c.(46-48)ATT>CTT	p.I16L	SYNGR1_uc003axo.3_Intron|SYNGR1_uc003axp.3_Intron|SYNGR1_uc003axq.3_Intron|SYNGR1_uc003axs.3_Intron	NM_006116	NP_006107	Q15750	TAB1_HUMAN	mitogen-activated protein kinase kinase kinase 7	Error:Variant_position_missing_in_Q15750_after_alignment					activation of MAPK activity|activation of MAPKKK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane	catalytic activity|protein binding			breast(1)	1						CGGCTTCCCCATTTTCTCCCC	0.612000													16	235					0	0	0.006320	0	0
RAF1	5894	broad.mit.edu	37	3	12633229	12633229	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:12633229T>A	uc003bxf.3	-	11	1586	c.1171A>T	c.(1171-1173)AGG>TGG	p.R391W	RAF1_uc011aut.1_Missense_Mutation_p.R176W|RAF1_uc011auu.1_Missense_Mutation_p.R309W	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	391	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	ACCTCATTCCTGAAGGCCTGG	0.507000			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				47	79					0	0	0.014410	0	0
TOP2B	7155	broad.mit.edu	37	3	25646332	25646332	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:25646332C>A	uc003cdj.2	-	33	4393	c.4393G>T	c.(4393-4395)GAT>TAT	p.D1465Y	TOP2B_uc011awm.1_Missense_Mutation_p.D322Y|TOP2B_uc010hff.1_Missense_Mutation_p.D331Y	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1470					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GAAGCAGAATCTTCTTCATTA	0.313000													6	16					8.12818e-05	8.97971e-05	0.001984	1	0
SCN10A	6336	broad.mit.edu	37	3	38835251	38835251	+	Missense_Mutation	SNP	G	A	A	rs140609990		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:38835251G>A	uc003ciq.2	-	1	251	c.251C>T	c.(250-252)CCG>CTG	p.P84L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	84					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTGTAGAACGGATCTAGATC	0.572000													43	81					0	0	0.010771	0	0
ATP6V1A	523	broad.mit.edu	37	3	113503595	113503595	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:113503595C>G	uc003eao.2	+	5	545	c.479C>G	c.(478-480)TCG>TGG	p.S160W	ATP6V1A_uc011bik.1_Missense_Mutation_p.S127W	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	160					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						AGTGAGAACTCGCTTATCAAA	0.368000													43	67					0	0	0.010771	0	0
STXBP5L	9515	broad.mit.edu	37	3	120978006	120978006	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:120978006C>G	uc003eec.3	+	18	2089	c.1949C>G	c.(1948-1950)GCA>GGA	p.A650G	STXBP5L_uc011bji.1_Missense_Mutation_p.A650G	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	650	WD 10.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GTAAGCTCAGCATATGGAATG	0.338000													2	12					0	0	0.004672	0	0
PROM1	8842	broad.mit.edu	37	4	15989318	15989318	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:15989318T>G	uc003goo.2	-	19	2310	c.2098A>C	c.(2098-2100)AAG>CAG	p.K700Q	PROM1_uc003gor.2_Missense_Mutation_p.K700Q|PROM1_uc003gos.2_Missense_Mutation_p.K691Q|PROM1_uc003got.2_Missense_Mutation_p.K700Q|PROM1_uc003gou.2_Missense_Mutation_p.K691Q|PROM1_uc003gop.2_Missense_Mutation_p.K691Q|PROM1_uc003goq.3_Missense_Mutation_p.K691Q	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	700	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						TGAAGTATCTTGACGCTTTGG	0.383000													6	379					0	0	0.001168	0	0
RUFY3	22902	broad.mit.edu	37	4	71659564	71659564	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:71659564A>G	uc003hfr.2	+	13	1995	c.1400A>G	c.(1399-1401)GAC>GGC	p.D467G	RUFY3_uc011cay.1_Missense_Mutation_p.D403G	NM_001037442	NP_001032519	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			TTCAAACAGGACTTTGGAGAC	0.527000													23	46					0	0	0.006320	0	0
CDKL2	8999	broad.mit.edu	37	4	76532405	76532405	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:76532405T>C	uc003hiq.2	-	4	1029	c.504A>G	c.(502-504)AGA>AGG	p.R168R	CDKL2_uc011cbp.1_Silent_p.R168R|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	168	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GTTCTGGAGCTCTGTACCATC	0.453000													34	67					0	0	0.015359	0	0
TIGD2	166815	broad.mit.edu	37	4	90035227	90035227	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:90035227G>T	uc003hsk.2	+	1	1260	c.1102G>T	c.(1102-1104)GAA>TAA	p.E368*	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	368	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		TGCAATTTATGAAGTGTCAAG	0.299000													8	18					0.000274275	0.000294592	0.004482	1	0
MANBA	4126	broad.mit.edu	37	4	103585962	103585962	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:103585962A>C	uc003hwg.2	-	11	1465	c.1365T>G	c.(1363-1365)AAT>AAG	p.N455K	MANBA_uc011ces.1_Missense_Mutation_p.N398K	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	455					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		CATTTTCATTATTGCCACTCC	0.338000													4	196					0	0	0.009096	0	0
PCDH18	54510	broad.mit.edu	37	4	138450855	138450855	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:138450855G>A	uc003ihe.3	-	1	2775	c.2388C>T	c.(2386-2388)CAC>CAT	p.H796H	PCDH18_uc003ihf.3_Silent_p.H789H|PCDH18_uc011cgz.1_Silent_p.H7H|PCDH18_uc003ihg.3_Silent_p.H576H|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	796	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGTGACTGTTGTGACTCTGCC	0.498000													6	10					0	0	0.003080	0	0
ABCE1	6059	broad.mit.edu	37	4	146041306	146041306	+	Splice_Site	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:146041306G>A	uc003ijx.2	+	11	1584	c.1144_splice	c.e11+1	p.G382_splice	ABCE1_uc003ijy.2_Splice_Site_p.G382_splice|ABCE1_uc010iot.2_Splice_Site	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1						interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					GGGGAAAATGGTAAGTTTTCT	0.313000													7	11					0	0	0.001984	0	0
DDR1	780	broad.mit.edu	37	6	30857025	30857025	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:30857025G>A	uc003nrr.2	+	5	494	c.235G>A	c.(235-237)GTG>ATG	p.V79M	DDR1_uc010jse.2_Missense_Mutation_p.V79M|DDR1_uc003nrq.2_Missense_Mutation_p.V79M|DDR1_uc003nrs.2_Missense_Mutation_p.V79M|DDR1_uc003nrt.2_Missense_Mutation_p.V79M|DDR1_uc011dms.1_Missense_Mutation_p.V97M|DDR1_uc011dmt.1_Missense_Mutation_p.V105M|DDR1_uc003nru.2_Missense_Mutation_p.V79M|DDR1_uc011dmu.1_Missense_Mutation_p.V79M|DDR1_uc003nrv.2_Missense_Mutation_p.V79M|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	79	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CGCAGGGTCGGTGTTTCCCAA	0.647000													184	362					0	0	0.014410	0	0
GTF2H4	2968	broad.mit.edu	37	6	30876923	30876923	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:30876923A>C	uc003nsa.1	+	2	317	c.110A>C	c.(109-111)CAC>CCC	p.H37P	GTF2H4_uc010jsf.2_Missense_Mutation_p.H37P|GTF2H4_uc011dmv.1_Intron|GTF2H4_uc003nsb.1_5'UTR|GTF2H4_uc011dmw.1_Missense_Mutation_p.H43P	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	37					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						TTGTATGGGCACCCTGCCACA	0.517000								NER					5	28					0	0	0.007413	0	0
PREP	5550	broad.mit.edu	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:105825364C>G	uc003prc.2	-	3	354	c.151G>C	c.(151-153)GTG>CTG	p.V51L		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	51					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	AGAAATGGCACAGTAATCTTA	0.353000													39	62					0	0	0.005524	0	0
ROS1	6098	broad.mit.edu	37	6	117622147	117622147	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:117622147T>G	uc003pxp.1	-	42	6922	c.6723A>C	c.(6721-6723)GAA>GAC	p.E2241D	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2241	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTCAAAGCTTTCATTTATGA	0.333000			T	GOPC|ROS1	glioblastoma|NSCLC								5	46					0	0	0.004007	0	0
RAET1L	154064	broad.mit.edu	37	6	150342042	150342042	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:150342042T>A	uc011eei.1	-	3	691	c.630A>T	c.(628-630)GGA>GGT	p.G210G		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	210	MHC class I alpha-2 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TCCTGTTACCTCCTGCACTTG	0.468000													80	206					0	0	0.014410	0	0
NSUN5P1	155400	broad.mit.edu	37	7	75045841	75045841	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:75045841A>G	uc003udh.1	+	4	608	c.565A>G	c.(565-567)AGA>GGA	p.R189G	NSUN5P1_uc003ude.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udf.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udg.1_Missense_Mutation_p.R143G	NM_145645	NP_663620			NOL1/NOP2/Sun domain family, member 5B												0						GAGACAGCAAAGAGCCGCAGC	0.572000													63	86					0	0	0.014410	0	0
ZAN	7455	broad.mit.edu	37	7	100383746	100383746	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:100383746G>T	uc003uwj.2	+	38	7127	c.6962G>T	c.(6961-6963)AGC>ATC	p.S2321I	ZAN_uc003uwk.2_Missense_Mutation_p.S2321I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.S371I	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2321	VWFC 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACAGCAACAGCAATTGTGTC	0.632000													239	210					1.72261e-137	2.1034e-137	0.014410	1	0
MUC17	140453	broad.mit.edu	37	7	100692247	100692247	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:100692247G>A	uc003uxp.1	+	5	12710	c.12657G>A	c.(12655-12657)ACG>ACA	p.T4219T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4219	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGACATTCACGGAACAGGTAA	0.507000													46	117					0	0	0.014410	0	0
ASB15	142685	broad.mit.edu	37	7	123264837	123264837	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:123264837C>A	uc003vku.1	+	8	958	c.666C>A	c.(664-666)CAC>CAA	p.H222Q	ASB15_uc003vkv.1_Missense_Mutation_p.H222Q|ASB15_uc003vkw.1_Missense_Mutation_p.H222Q	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	222	ANK 4.				intracellular signal transduction					skin(2)|lung(1)	3						AGTATGGTCACTGTGACGTGT	0.468000											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	14					0.000132079	0.000144539	0.008871	1	0
MGAM	8972	broad.mit.edu	37	7	141800677	141800677	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:141800677T>G	uc003vwy.2	+	45	5316	c.5262T>G	c.(5260-5262)GAT>GAG	p.D1754E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1754	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTGGGATGATGGGCAAAGCA	0.502000													13	14					0	0	0.003163	0	0
BMP1	649	broad.mit.edu	37	8	22022973	22022973	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:22022973C>A	uc003xbg.2	+	1	299	c.55C>A	c.(55-57)CCC>ACC	p.P19T	BMP1_uc011kzb.1_RNA|BMP1_uc003xba.2_Missense_Mutation_p.P19T|BMP1_uc003xbb.2_Missense_Mutation_p.P19T|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_5'UTR|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_5'UTR|BMP1_uc011kzc.1_5'UTR|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	19					cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GCTCCCGCGTCCCGGCCGGCC	0.721000													4	18					0.000157383	0.000170621	0.003080	1	0
CHRNB3	1142	broad.mit.edu	37	8	42586819	42586819	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:42586819C>T	uc003xpi.1	+	5	497	c.369C>T	c.(367-369)GGC>GGT	p.G123G		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	123	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTGCTGACGGCCGCTTCGAAG	0.498000													4	96					0	0	0.009096	0	0
SNTB1	6641	broad.mit.edu	37	8	121587444	121587444	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:121587444G>A	uc010mdg.2	-	4	1244	c.1018C>T	c.(1018-1020)CAG>TAG	p.Q340*	SNTB1_uc003ype.2_Nonsense_Mutation_p.Q340*	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	340	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GGTTTCCACTGTTTCTTGCTC	0.483000													13	40					0	0	0.020292	0	0
ZFP41	286128	broad.mit.edu	37	8	144332048	144332048	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:144332048C>T	uc003yxw.2	+	2	393	c.35C>T	c.(34-36)CCG>CTG	p.P12L	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	12					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AAGAAGACGCCGACCCCAAGG	0.592000													11	25					0	0	0.010729	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608132	84608132	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr9:84608132G>A	uc004amn.2	+	4	2794	c.2747G>A	c.(2746-2748)TGG>TAG	p.W916*		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	916						integral to membrane					0						AGGATGCTGTGGGGCCTTCCC	0.463000													14	36					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	MT	10633	10633	+	RNA	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chrM:10633T>G	uc004cov.3	+	1		c.56T>G			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		CCACTCCCTCTTAGCCAATAT	0.473000													2	4					0	0	0.004672	0	0
MXRA5	25878	broad.mit.edu	37	X	3238719	3238719	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chrX:3238719A>G	uc004crg.3	-	5	5164	c.5007T>C	c.(5005-5007)AGT>AGC	p.S1669S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1669						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAATTGTTGTACTTGATAATC	0.438000													138	56					0	0	0.014410	0	0
CTPS2	56474	broad.mit.edu	37	X	16685795	16685795	+	Silent	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chrX:16685795A>C	uc004cxk.2	-	12	1986	c.1242T>G	c.(1240-1242)CTT>CTG	p.L414L	CTPS2_uc004cxl.2_Silent_p.L414L|CTPS2_uc004cxm.2_Silent_p.L414L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	414	Glutamine amidotransferase type-1.				glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					CTTTCAAGTTAAGGCAGTTTC	0.323000													103	34					0	0	0.014410	0	0
ELTD1	64123	broad.mit.edu	37	1	79402059	79402059	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:79402059T>C	uc001diq.3	-	7	954	c.798A>G	c.(796-798)AAA>AAG	p.K266K		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	266	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GATGAATATGTTTCATGTTAT	0.259													23	123					0	0	0.012319	0	0
AMY2B	280	broad.mit.edu	37	1	104122036	104122036	+	Missense_Mutation	SNP	G	A	A	rs143243690		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:104122036G>A	uc001duq.2	+	12	2066	c.1450G>A	c.(1450-1452)GTT>ATT	p.V484I	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.V484I|AMY2B_uc001dus.1_Intron	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	484					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TAAAATCTACGTTTCTGACGA	0.323													173	755					0	0	0.014410	0	0
LRIG2	9860	broad.mit.edu	37	1	113616063	113616063	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:113616063A>T	uc001edf.1	+	1	233	c.35A>T	c.(34-36)CAG>CTG	p.Q12L	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	12						cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		CCGGAGGAGCAGTTGCTGGGG	0.642											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	106	190					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	1	146466030	146466030	+	Missense_Mutation	SNP	C	G	G	rs116184198	by1000genomes	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:146466030C>G	uc010ozl.1	+	13	1647	c.1355C>G	c.(1354-1356)ACC>AGC	p.T452S		NM_017940	NP_060410			hypothetical protein LOC55672																		CAGCACATCACCTTTGCCCTT	0.433													7	191					0	0	0.003080	0	0
KIAA0907	22889	broad.mit.edu	37	1	155899153	155899153	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:155899153C>G	uc001fmi.1	-	4	422	c.398G>C	c.(397-399)AGT>ACT	p.S133T	KIAA0907_uc001fmj.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrk.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrl.1_RNA|KIAA0907_uc001fml.1_Missense_Mutation_p.S133T|KIAA0907_uc001fmm.2_Missense_Mutation_p.S133T|KIAA0907_uc001fmo.2_Missense_Mutation_p.S133T	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	133											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TGCAGCCCCACTAAGTCGGCT	0.408													45	73					0	0	0.014410	0	0
USF1	7391	broad.mit.edu	37	1	161011569	161011569	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:161011569T>C	uc001fxi.2	-	6	539	c.344A>G	c.(343-345)CAC>CGC	p.H115R	F11R_uc010pjw.1_5'Flank|F11R_uc001fxf.3_5'Flank|TSTD1_uc010pjx.1_5'Flank|TSTD1_uc009wtw.2_5'Flank|TSTD1_uc001fxh.3_5'Flank|USF1_uc001fxj.2_Missense_Mutation_p.H56R	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	115					cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GTAAGTATAGTGCGTCTCAGC	0.572											OREG0013936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	102					0	0	0.008291	0	0
PYROXD2	84795	broad.mit.edu	37	10	100167696	100167696	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:100167696A>G	uc001kpc.2	-	3	292	c.206T>C	c.(205-207)ATC>ACC	p.I69T	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Missense_Mutation_p.I69T	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	69	FAD (Potential).						oxidoreductase activity			central_nervous_system(1)	1						TGCACCCCCGATCACATGGCG	0.627													4	12					0	0	0.009096	0	0
COL17A1	1308	broad.mit.edu	37	10	105793764	105793764	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:105793764A>G	uc001kxr.2	-	52	4264	c.4095T>C	c.(4093-4095)GCT>GCC	p.A1365A	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1365	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CAGCAAAGTCAGCTCCCAATA	0.587													33	86					0	0	0.015359	0	0
PTPRE	5791	broad.mit.edu	37	10	129859261	129859261	+	Silent	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:129859261C>A	uc001lkb.2	+	8	849	c.570C>A	c.(568-570)ATC>ATA	p.I190I	PTPRE_uc009yat.2_Silent_p.I201I|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.I190I|PTPRE_uc001lkd.2_Silent_p.I132I|PTPRE_uc010quq.1_Silent_p.I91I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	190	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CAGACTACATCAATGCTTCCT	0.428													35	60					3.90053e-15	4.28293e-15	0.012213	1	0
PAOX	196743	broad.mit.edu	37	10	135193909	135193909	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:135193909C>T	uc001lmv.2	+	2	668	c.588C>T	c.(586-588)GGC>GGT	p.G196G	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Silent_p.G196G|PAOX_uc001lmy.2_Silent_p.G196G|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_Intron|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_Intron	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	334					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		GTGTGAGCGGCACCCACAGCA	0.622													7	57					0	0	0.001984	0	0
HPX	3263	broad.mit.edu	37	11	6453151	6453151	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr11:6453151G>C	uc001mdg.2	-	8	993	c.932C>G	c.(931-933)GCC>GGC	p.A311G	HPX_uc001mdf.2_Missense_Mutation_p.A57G|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	311	Hemopexin-like 5.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CCAGGAAAAGGCAGCATCCAC	0.542													83	158					0	0	0.014410	0	0
SLC22A10	387775	broad.mit.edu	37	11	63129877	63129877	+	RNA	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr11:63129877C>T	uc010rmo.1	+	9		c.999C>T						Q63ZE4	S22AA_HUMAN	Homo sapiens mRNA for putative protein product of HMFN2567, complete cds.							integral to membrane	transmembrane transporter activity			ovary(2)	2						TGCTCAATGTCTGCTCATCAA	0.438													5	9					0	0	0.014758	0	0
GYS2	2998	broad.mit.edu	37	12	21757442	21757442	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:21757442G>T	uc001rfb.2	-	1	340	c.85C>A	c.(85-87)CTG>ATG	p.L29M		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	29					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCAAAGAGCAGTAACTCCTCC	0.493													158	156					1.46278e-64	1.72455e-64	0.014410	1	0
TSFM	10102	broad.mit.edu	37	12	58177005	58177005	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:58177005C>T	uc001sqi.2	+	2	219	c.170C>T	c.(169-171)ACA>ATA	p.T57I	TSFM_uc010sse.1_5'UTR|TSFM_uc001sqh.2_Missense_Mutation_p.T57I|TSFM_uc010ssf.1_Missense_Mutation_p.T57I	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	57					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CGGCGGAAAACAGGCTACTCC	0.582											OREG0021954	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	76	190					0	0	0.014410	0	0
CCDC63	160762	broad.mit.edu	37	12	111321841	111321841	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:111321841G>C	uc001trv.1	+	8	1056	c.861G>C	c.(859-861)AAG>AAC	p.K287N	CCDC63_uc010sye.1_Missense_Mutation_p.K247N|CCDC63_uc001trw.1_Missense_Mutation_p.K202N	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	287	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TAGCTCTCAAGGCAAAGAAGC	0.488													118	134					0	0	0.014410	0	0
LOC284232	284232	broad.mit.edu	37	13	19415783	19415783	+	RNA	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr13:19415783G>A	uc010tcj.1	-	1		c.30327C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AGCAGCAGAAGATGTACTATG	0.299													3	51					0	0	0.004672	0	0
POSTN	10631	broad.mit.edu	37	13	38154716	38154716	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr13:38154716T>G	uc001uwo.3	-	11	1629	c.1511A>C	c.(1510-1512)AAA>ACA	p.K504T	POSTN_uc010tet.1_Missense_Mutation_p.K32T|POSTN_uc001uwp.3_Missense_Mutation_p.K504T|POSTN_uc001uwr.2_Missense_Mutation_p.K504T|POSTN_uc001uwq.2_Missense_Mutation_p.K504T|POSTN_uc010teu.1_Missense_Mutation_p.K504T|POSTN_uc010tev.1_Missense_Mutation_p.K504T|POSTN_uc010tew.1_Missense_Mutation_p.K504T|POSTN_uc010tex.1_Missense_Mutation_p.K419T	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	504	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CTTATCTTGTTTTAACTTTTC	0.438													120	220					0	0	0.014410	0	0
PCDH20	64881	broad.mit.edu	37	13	61987658	61987658	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr13:61987658A>G	uc001vid.3	-	2	938	c.574T>C	c.(574-576)TTT>CTT	p.F192L	PCDH20_uc010thj.1_Missense_Mutation_p.F192L	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	165	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ACCTTCACAAACCTGAAGTAT	0.532													14	152					0	0	0.003163	0	0
MYH7	4625	broad.mit.edu	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr14:23886422C>T	uc001wjx.2	-	32	4565	c.4459G>A	c.(4459-4461)GCC>ACC	p.A1487T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1487	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCCTCATAGGCGTTCTTGAGT	0.597													66	158					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106791229	106791229	+	RNA	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr14:106791229C>T	uc010tyt.1	-	386		c.14389G>A								Parts of antibodies, mostly variable regions.												0						AATCCAGAGGCTGCACAGGAG	0.587													53	254					0	0	0.014410	0	0
PLCB2	5330	broad.mit.edu	37	15	40594160	40594160	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:40594160T>A	uc001zld.2	-	7	881	c.580A>T	c.(580-582)AAA>TAA	p.K194*	PLCB2_uc010bbo.2_Nonsense_Mutation_p.K194*|PLCB2_uc010ucm.1_Nonsense_Mutation_p.K194*|PLCB2_uc001zle.3_Nonsense_Mutation_p.K194*	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	194					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCACTCACTTTGCCTTTGGGG	0.582													20	44					0	0	0.008871	0	0
GLDN	342035	broad.mit.edu	37	15	51693835	51693835	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:51693835G>A	uc002aba.2	+	9	1242	c.1073G>A	c.(1072-1074)GGC>GAC	p.G358D	GLDN_uc002abb.2_Missense_Mutation_p.G234D	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	358	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		CTTCTGAATGGCAGTTACACG	0.483											OREG0023125	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	95					0	0	0.014410	0	0
VPS13C	54832	broad.mit.edu	37	15	62221845	62221845	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:62221845C>G	uc002agz.2	-	51	6215	c.6141G>C	c.(6139-6141)AAG>AAC	p.K2047N	VPS13C_uc002aha.2_Missense_Mutation_p.K2004N|VPS13C_uc002ahb.1_Missense_Mutation_p.K2047N|VPS13C_uc002ahc.1_Missense_Mutation_p.K2004N	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2047					protein localization					ovary(2)	2						ATACATACAGCTTGTCAAGAA	0.368													25	43					0	0	0.005443	0	0
CALML4	91860	broad.mit.edu	37	15	68497600	68497600	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:68497600T>G	uc002arb.2	-	1	849	c.115A>C	c.(115-117)AGC>CGC	p.S39R	CALML4_uc002arc.2_Missense_Mutation_p.S39R|CALML4_uc002ard.2_RNA|CALML4_uc002are.2_RNA|CALML4_uc010bhz.2_RNA	NM_033429	NP_219501	Q96GE6	CALL4_HUMAN	calmodulin-like 4 isoform 1	39							calcium ion binding				0						GGGCCTCGGCTGCTACCCGTG	0.612													25	55					0	0	0.017118	0	0
MYO9A	4649	broad.mit.edu	37	15	72192125	72192125	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:72192125T>G	uc002atl.3	-	24	3846	c.3373A>C	c.(3373-3375)AGA>CGA	p.R1125R	MYO9A_uc010biq.2_Silent_p.R745R|MYO9A_uc002atn.1_Silent_p.R1106R|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1125	IQ 4.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GCTTTCCATCTTGCTTGTATG	0.438													42	69					0	0	0.007835	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84581896	84581896	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:84581896C>T	uc002bjz.3	+	16	1977	c.1753C>T	c.(1753-1755)CAG>TAG	p.Q585*	ADAMTSL3_uc010bmt.1_Nonsense_Mutation_p.Q585*|ADAMTSL3_uc010bmu.1_Nonsense_Mutation_p.Q585*	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	585	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCGGGTGTGCAGGTCCGTGA	0.582													47	116					0	0	0.014410	0	0
BTBD12	84464	broad.mit.edu	37	16	3641173	3641173	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:3641173C>G	uc002cvp.2	-	12	3093	c.2466G>C	c.(2464-2466)ATG>ATC	p.M822I		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	822	Potential.|Interaction with PLK1 and TERF2-TERF2IP.|Glu-rich.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CATCTGCCCACATTGACCTCA	0.468								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				64	167					0	0	0.014410	0	0
SMG1	23049	broad.mit.edu	37	16	18844471	18844471	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:18844471G>A	uc002dfm.2	-	51	8946	c.8583C>T	c.(8581-8583)TTC>TTT	p.F2861F	SMG1_uc010bwb.2_Silent_p.F2721F|SMG1_uc010bwa.2_Silent_p.F1592F	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2861					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TGATTTGCCGGAAATTCGAAT	0.338													26	65					0	0	0.018920	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254													4	32					0	0	0.009096	0	0
SRCAP	10847	broad.mit.edu	37	16	30732089	30732089	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:30732089C>A	uc002dze.1	+	20	3428	c.3043C>A	c.(3043-3045)CCA>ACA	p.P1015T	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P872T|SRCAP_uc010bzz.1_Missense_Mutation_p.P585T	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1015	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGTGAACAACCCACGGGCGCC	0.602													83	150					1.32764e-51	1.54891e-51	0.014410	1	0
ZZEF1	23140	broad.mit.edu	37	17	3953114	3953114	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:3953114C>T	uc002fxe.2	-	37	5967	c.5903G>A	c.(5902-5904)GGG>GAG	p.G1968E	ZZEF1_uc002fxh.2_Missense_Mutation_p.G282E|ZZEF1_uc002fxi.2_Missense_Mutation_p.G203E|ZZEF1_uc002fxj.1_Missense_Mutation_p.G581E	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1968							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTCGAGTCCCCATCTGGCAA	0.498													18	106					0	0	0.014410	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904204	21904204	+	RNA	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:21904204G>T	uc002gza.2	+	1		c.143G>T				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ctgccaggacggtgttcgggt	0													5	51					1.024e-07	1.09227e-07	0.014758	1	0
QRICH2	84074	broad.mit.edu	37	17	74283337	74283337	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:74283337T>A	uc002jrd.1	-	7	3629	c.3449A>T	c.(3448-3450)CAA>CTA	p.Q1150L	QRICH2_uc010wsz.1_Missense_Mutation_p.Q1076L|QRICH2_uc010dgw.1_5'UTR	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1150	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GCCCCTGTCTTGGCTCTCCCT	0.567													28	69					0	0	0.005443	0	0
TBCD	6904	broad.mit.edu	37	17	80888515	80888515	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:80888515G>C	uc002kfz.2	+	33	3239	c.3109G>C	c.(3109-3111)GAG>CAG	p.E1037Q	TBCD_uc002kfy.1_Missense_Mutation_p.E1037Q|TBCD_uc002kgc.2_Missense_Mutation_p.E182Q|TBCD_uc002kgd.2_Missense_Mutation_p.E29Q	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	1037					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CCTTCTGAATGAGAGGTGAGT	0.597													25	68					0	0	0.018920	0	0
HDHD2	84064	broad.mit.edu	37	18	44662721	44662721	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr18:44662721T>C	uc002lcs.2	-	2	223	c.90A>G	c.(88-90)GAA>GAG	p.E30E	HDHD2_uc002lct.2_5'UTR	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	30							hydrolase activity				0						TTTTAAGAGCTTCCTGTGCGC	0.463													66	117					0	0	0.014410	0	0
MYO5B	4645	broad.mit.edu	37	18	47500737	47500737	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr18:47500737C>T	uc002leb.2	-	10	1593	c.1305G>A	c.(1303-1305)GGG>GGA	p.G435G	MYO5B_uc002lec.1_Silent_p.G434G	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	435	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTCCAGGACCCCGATGAAGG	0.582													28	49					0	0	0.006320	0	0
RFX2	5990	broad.mit.edu	37	19	6013026	6013026	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:6013026C>T	uc002meb.2	-	8	1139	c.870G>A	c.(868-870)ATG>ATA	p.M290I	RFX2_uc002mec.2_Missense_Mutation_p.M265I	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GCTGCTGCCGCATGGCCATGT	0.617													72	143					0	0	0.014410	0	0
PSMC4	5704	broad.mit.edu	37	19	40486339	40486339	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:40486339T>C	uc002omq.2	+	9	1102	c.1065T>C	c.(1063-1065)TCT>TCC	p.S355S	PSMC4_uc002omr.2_Silent_p.S324S	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	355					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAACCTCTCTGAGGAGGTTG	0.517													83	162					0	0	0.014410	0	0
GIPR	2696	broad.mit.edu	37	19	46184876	46184876	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:46184876C>G	uc002pcu.1	+	13	1266	c.1167C>G	c.(1165-1167)AGC>AGG	p.S389R	GIPR_uc002pct.1_Missense_Mutation_p.S389R|GIPR_uc010xxp.1_Missense_Mutation_p.S353R|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	389	Helical; Name=7; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		TCCTGGTCAGCGTCCTCTACT	0.662													27	55					0	0	0.004656	0	0
FGF21	26291	broad.mit.edu	37	19	49261265	49261265	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:49261265C>A	uc002pkn.1	+	4	990	c.418C>A	c.(418-420)CAC>AAC	p.H140N	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.H140N	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	140					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GTCCGAAGCCCACGGCCTCCC	0.632													62	123					3.57465e-26	4.04404e-26	0.014410	1	0
SIGLEC9	27180	broad.mit.edu	37	19	51633170	51633170	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:51633170C>G	uc002pvu.2	+	7	1293	c.1226C>G	c.(1225-1227)GCA>GGA	p.A409G	SIGLEC9_uc010yct.1_Intron	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	409	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GAACCTTGGGCAGAAGACAGT	0.502													31	89					0	0	0.010818	0	0
FBXO11	80204	broad.mit.edu	37	2	48050458	48050458	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:48050458T>G	uc010fbl.2	-	12	1302	c.1188A>C	c.(1186-1188)GCA>GCC	p.A396A	FBXO11_uc002rwe.2_Silent_p.A396A|FBXO11_uc002rwf.2_Silent_p.A396A|FBXO11_uc002rwg.1_Silent_p.A396A|FBXO11_uc010fbk.2_5'UTR	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	480	PbH1 4.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTTCAAAGCCTGCTATCCTAT	0.373													27	50					0	0	0.005443	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808956	48808956	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:48808956A>G	uc010yol.1	+	1	1231	c.1184A>G	c.(1183-1185)GAG>GGG	p.E395G	STON1_uc002rwo.3_Missense_Mutation_p.E395G|STON1_uc010fbm.2_Missense_Mutation_p.E395G|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.E395G|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.E395G	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	395					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACTGTGGAGGAGGAGCTGATG	0.433													37	83					0	0	0.019004	0	0
IMMT	10989	broad.mit.edu	37	2	86371415	86371415	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:86371415T>G	uc002sqz.3	-	15	2641	c.2253A>C	c.(2251-2253)GGA>GGC	p.G751G	IMMT_uc002sqy.3_Silent_p.G492G|IMMT_uc002srb.3_Silent_p.G740G|IMMT_uc002sra.3_Silent_p.G750G|IMMT_uc010ytd.1_Silent_p.G739G|IMMT_uc010yte.1_Silent_p.G704G	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	751	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						CCTGAGTGGTTCCTATTCCTA	0.478													38	53					0	0	0.019004	0	0
Unknown	0	broad.mit.edu	37	2	96521777	96521777	+	Missense_Mutation	SNP	T	C	C	rs77768218		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:96521777T>C	uc002suz.1	-	31	2790	c.1313A>G	c.(1312-1314)CAT>CGT	p.H438R						SubName: Full=Putative uncharacterized protein ENSP00000312008; Flags: Fragment;																		AAGGTCTTCATGCTTTCTTTT	0.383													3	37					0	0	0.014758	0	0
VWC2L	402117	broad.mit.edu	37	2	215440518	215440518	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:215440518G>T	uc002vet.2	+	4	773	c.643G>T	c.(643-645)GAA>TAA	p.E215*	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	215						extracellular region					0						TTCGAAACGTGAATGCCAAGG	0.458													78	178					6.11987e-43	7.06624e-43	0.014410	1	0
GIGYF2	26058	broad.mit.edu	37	2	233681744	233681744	+	Splice_Site	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:233681744T>A	uc002vti.3	+	22	2707	c.2370_splice	c.e22+2	p.Q790_splice	GIGYF2_uc002vtg.2_Splice_Site_p.Q784_splice|GIGYF2_uc002vtj.3_Splice_Site_p.Q811_splice|GIGYF2_uc002vtk.3_Splice_Site_p.Q790_splice|GIGYF2_uc002vth.3_Splice_Site_p.Q784_splice|GIGYF2_uc010zmk.1_Splice_Site|GIGYF2_uc010zml.1_Splice_Site_p.Q621_splice|GIGYF2_uc002vtq.3_Splice_Site_p.Q123_splice	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b						cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGGAAACAGGTATGTATCTGG	0.468													81	209					0	0	0.014410	0	0
C20orf12	55184	broad.mit.edu	37	20	18433281	18433281	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr20:18433281C>G	uc010zsa.1	-	6	787	c.578G>C	c.(577-579)AGA>ACA	p.R193T	C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.D24H|C20orf12_uc002wqq.3_Missense_Mutation_p.R174T|C20orf12_uc002wqu.1_Intron|C20orf12_uc010gct.1_Intron	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	Error:Variant_position_missing_in_Q9NVP4_after_alignment						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				GGTGGGTGGTCTAGAACCTGA	0.423													6	22					0	0	0.001984	0	0
CD40	958	broad.mit.edu	37	20	44757638	44757638	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr20:44757638G>C	uc002xrg.1	+	9	870	c.793G>C	c.(793-795)GAT>CAT	p.D265H	CD40_uc002xrh.1_3'UTR|CD40_uc002xri.1_3'UTR|CD40_uc002xrj.1_RNA|CD40_uc002xrk.1_RNA|CD40_uc002xrl.1_RNA	NM_001250	NP_001241	P25942	TNR5_HUMAN	CD40 antigen isoform 1 precursor	265	Cytoplasmic (Potential).				B cell proliferation|cellular response to mechanical stimulus|inflammatory response|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein complex assembly	CD40 receptor complex|extracellular region	enzyme binding|receptor activity			lung(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)			Simvastatin(DB00641)	CACCCAGGAGGATGGCAAAGA	0.582									Immune_Deficiency_with_Hyper-IgM				30	136					0	0	0.015359	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887763	47887763	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr20:47887763T>C	uc002xui.2	-	3	833	c.586A>G	c.(586-588)AGC>GGC	p.S196G		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	196							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATTTTGGAGCTACAAGCCTTC	0.448													106	138					0	0	0.014410	0	0
C21orf99	149992	broad.mit.edu	37	21	14424143	14424143	+	RNA	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr21:14424143G>A	uc002yiy.3	+	5		c.2958G>A			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						AACACCTGACGAGGCTGCACC	0.438													8	14					0	0	0.004482	0	0
GNAZ	2781	broad.mit.edu	37	22	23438484	23438484	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:23438484A>G	uc002zwu.1	+	2	1139	c.602A>G	c.(601-603)GAC>GGC	p.D201G	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	201	GTP (By similarity).					endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		AAGATGGTGGACGTGGGGGGG	0.567													60	136					0	0	0.014410	0	0
CABIN1	23523	broad.mit.edu	37	22	24447425	24447425	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:24447425T>A	uc002zzi.1	+	8	922	c.795T>A	c.(793-795)ATT>ATA	p.I265I	CABIN1_uc002zzj.1_Intron|CABIN1_uc002zzl.1_Silent_p.I265I|CABIN1_uc010guk.1_Silent_p.I220I|CABIN1_uc002zzk.1_Silent_p.I220I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	265					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGCAGCCCATTCCTTTCTTCA	0.577													21	29					0	0	0.012319	0	0
DEPDC5	9681	broad.mit.edu	37	22	32193641	32193641	+	Nonsense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:32193641A>T	uc003als.2	+	13	965	c.823A>T	c.(823-825)AAA>TAA	p.K275*	DEPDC5_uc011als.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alu.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Nonsense_Mutation_p.K275*|DEPDC5_uc003alr.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alt.1_Nonsense_Mutation_p.K247*	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	275					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CGTAACCATTAAAAAACTCTT	0.428													23	26					0	0	0.004656	0	0
SOX10	6663	broad.mit.edu	37	22	38374016	38374016	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:38374016C>T	uc003aun.1	-	3	833	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Silent_p.Q185Q	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	185						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CCGCCTCGCCCTGGGCGGCCT	0.682													15	35					0	0	0.004007	0	0
UPK3A	7380	broad.mit.edu	37	22	45683306	45683306	+	Silent	SNP	A	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr22:45683306A>C	uc003bfy.2	+	3	468	c.462A>C	c.(460-462)GCA>GCC	p.A154A	UPK3A_uc010gzy.2_Intron	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	154	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TCTGTAACGCACCCCTGTCGG	0.602													4	8					0	0	0.001984	0	0
RAF1	5894	broad.mit.edu	37	3	12633229	12633229	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:12633229T>A	uc003bxf.3	-	11	1586	c.1171A>T	c.(1171-1173)AGG>TGG	p.R391W	RAF1_uc011aut.1_Missense_Mutation_p.R176W|RAF1_uc011auu.1_Missense_Mutation_p.R309W	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	391	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	ACCTCATTCCTGAAGGCCTGG	0.507			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				24	56					0	0	0.005443	0	0
TOP2B	7155	broad.mit.edu	37	3	25646332	25646332	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:25646332C>A	uc003cdj.2	-	33	4393	c.4393G>T	c.(4393-4395)GAT>TAT	p.D1465Y	TOP2B_uc011awm.1_Missense_Mutation_p.D322Y|TOP2B_uc010hff.1_Missense_Mutation_p.D331Y	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1470					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GAAGCAGAATCTTCTTCATTA	0.313													44	81					1.61004e-24	1.80324e-24	0.014410	1	0
SCN10A	6336	broad.mit.edu	37	3	38835251	38835251	+	Missense_Mutation	SNP	G	A	A	rs140609990		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:38835251G>A	uc003ciq.2	-	1	251	c.251C>T	c.(250-252)CCG>CTG	p.P84L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	84					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTGTAGAACGGATCTAGATC	0.572													83	187					0	0	0.014410	0	0
ATP6V1A	523	broad.mit.edu	37	3	113503595	113503595	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:113503595C>G	uc003eao.2	+	5	545	c.479C>G	c.(478-480)TCG>TGG	p.S160W	ATP6V1A_uc011bik.1_Missense_Mutation_p.S127W	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	160					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						AGTGAGAACTCGCTTATCAAA	0.368													54	94					0	0	0.014410	0	0
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:195505836G>C	uc011bto.1	-	3	12691	c.12231C>G	c.(12229-12231)CAC>CAG	p.H4077Q	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.597													2	4					0	0	0.004672	0	0
RUFY3	22902	broad.mit.edu	37	4	71659564	71659564	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:71659564A>G	uc003hfr.2	+	13	1995	c.1400A>G	c.(1399-1401)GAC>GGC	p.D467G	RUFY3_uc011cay.1_Missense_Mutation_p.D403G	NM_001037442	NP_001032519	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			TTCAAACAGGACTTTGGAGAC	0.527													30	49					0	0	0.008361	0	0
CDKL2	8999	broad.mit.edu	37	4	76532405	76532405	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:76532405T>C	uc003hiq.2	-	4	1029	c.504A>G	c.(502-504)AGA>AGG	p.R168R	CDKL2_uc011cbp.1_Silent_p.R168R|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	168	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GTTCTGGAGCTCTGTACCATC	0.453													40	72					0	0	0.007835	0	0
TIGD2	166815	broad.mit.edu	37	4	90035227	90035227	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:90035227G>T	uc003hsk.2	+	1	1260	c.1102G>T	c.(1102-1104)GAA>TAA	p.E368*	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	368	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		TGCAATTTATGAAGTGTCAAG	0.299													24	66					1.77063e-15	1.96347e-15	0.005443	1	0
PCDH18	54510	broad.mit.edu	37	4	138450855	138450855	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:138450855G>A	uc003ihe.3	-	1	2775	c.2388C>T	c.(2386-2388)CAC>CAT	p.H796H	PCDH18_uc003ihf.3_Silent_p.H789H|PCDH18_uc011cgz.1_Silent_p.H7H|PCDH18_uc003ihg.3_Silent_p.H576H|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	796	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGTGACTGTTGTGACTCTGCC	0.498													37	43					0	0	0.006999	0	0
ABCE1	6059	broad.mit.edu	37	4	146041306	146041306	+	Splice_Site	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr4:146041306G>A	uc003ijx.2	+	11	1584	c.1144_splice	c.e11+1	p.G382_splice	ABCE1_uc003ijy.2_Splice_Site_p.G382_splice|ABCE1_uc010iot.2_Splice_Site	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1						interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					GGGGAAAATGGTAAGTTTTCT	0.313													31	52					0	0	0.009535	0	0
DDR1	780	broad.mit.edu	37	6	30857025	30857025	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:30857025G>A	uc003nrr.2	+	5	494	c.235G>A	c.(235-237)GTG>ATG	p.V79M	DDR1_uc010jse.2_Missense_Mutation_p.V79M|DDR1_uc003nrq.2_Missense_Mutation_p.V79M|DDR1_uc003nrs.2_Missense_Mutation_p.V79M|DDR1_uc003nrt.2_Missense_Mutation_p.V79M|DDR1_uc011dms.1_Missense_Mutation_p.V97M|DDR1_uc011dmt.1_Missense_Mutation_p.V105M|DDR1_uc003nru.2_Missense_Mutation_p.V79M|DDR1_uc011dmu.1_Missense_Mutation_p.V79M|DDR1_uc003nrv.2_Missense_Mutation_p.V79M|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	79	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CGCAGGGTCGGTGTTTCCCAA	0.647													119	286					0	0	0.014410	0	0
PREP	5550	broad.mit.edu	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:105825364C>G	uc003prc.2	-	3	354	c.151G>C	c.(151-153)GTG>CTG	p.V51L		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	51					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	AGAAATGGCACAGTAATCTTA	0.353													54	106					0	0	0.014410	0	0
ROS1	6098	broad.mit.edu	37	6	117622147	117622147	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:117622147T>G	uc003pxp.1	-	42	6922	c.6723A>C	c.(6721-6723)GAA>GAC	p.E2241D	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2241	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTCAAAGCTTTCATTTATGA	0.333			T	GOPC|ROS1	glioblastoma|NSCLC								13	67					0	0	0.010818	0	0
RAET1L	154064	broad.mit.edu	37	6	150342042	150342042	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr6:150342042T>A	uc011eei.1	-	3	691	c.630A>T	c.(628-630)GGA>GGT	p.G210G		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	210	MHC class I alpha-2 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TCCTGTTACCTCCTGCACTTG	0.468													58	119					0	0	0.014410	0	0
NSUN5P1	155400	broad.mit.edu	37	7	75045841	75045841	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:75045841A>G	uc003udh.1	+	4	608	c.565A>G	c.(565-567)AGA>GGA	p.R189G	NSUN5P1_uc003ude.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udf.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udg.1_Missense_Mutation_p.R143G	NM_145645	NP_663620			NOL1/NOP2/Sun domain family, member 5B												0						GAGACAGCAAAGAGCCGCAGC	0.572													44	49					0	0	0.014410	0	0
ZAN	7455	broad.mit.edu	37	7	100383746	100383746	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:100383746G>T	uc003uwj.2	+	38	7127	c.6962G>T	c.(6961-6963)AGC>ATC	p.S2321I	ZAN_uc003uwk.2_Missense_Mutation_p.S2321I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.S371I	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2321	VWFC 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACAGCAACAGCAATTGTGTC	0.632													126	129					2.37897e-42	2.71882e-42	0.014410	1	0
MUC17	140453	broad.mit.edu	37	7	100692247	100692247	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:100692247G>A	uc003uxp.1	+	5	12710	c.12657G>A	c.(12655-12657)ACG>ACA	p.T4219T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4219	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGACATTCACGGAACAGGTAA	0.507													41	78					0	0	0.008740	0	0
ASB15	142685	broad.mit.edu	37	7	123264837	123264837	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:123264837C>A	uc003vku.1	+	8	958	c.666C>A	c.(664-666)CAC>CAA	p.H222Q	ASB15_uc003vkv.1_Missense_Mutation_p.H222Q|ASB15_uc003vkw.1_Missense_Mutation_p.H222Q	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	222	ANK 4.				intracellular signal transduction					skin(2)|lung(1)	3						AGTATGGTCACTGTGACGTGT	0.468											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	44					2.61193e-14	2.84016e-14	0.009535	1	0
MGAM	8972	broad.mit.edu	37	7	141800677	141800677	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:141800677T>G	uc003vwy.2	+	45	5316	c.5262T>G	c.(5260-5262)GAT>GAG	p.D1754E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1754	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTGGGATGATGGGCAAAGCA	0.502													22	19					0	0	0.012319	0	0
TRY6	154754	broad.mit.edu	37	7	142479940	142479940	+	Silent	SNP	C	T	T	rs58649169	by1000genomes	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr7:142479940C>T	uc011ksq.1	+	2	155	c.72C>T	c.(70-72)ATC>ATT	p.I24I	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ATGACAAGATCGTTGGGGGCT	0.557													4	94					0	0	0.014758	0	0
BMP1	649	broad.mit.edu	37	8	22022973	22022973	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:22022973C>A	uc003xbg.2	+	1	299	c.55C>A	c.(55-57)CCC>ACC	p.P19T	BMP1_uc011kzb.1_RNA|BMP1_uc003xba.2_Missense_Mutation_p.P19T|BMP1_uc003xbb.2_Missense_Mutation_p.P19T|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_5'UTR|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_5'UTR|BMP1_uc011kzc.1_5'UTR|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	19					cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GCTCCCGCGTCCCGGCCGGCC	0.721													4	13					0.00198382	0.00209611	0.001984	1	0
SNTB1	6641	broad.mit.edu	37	8	121587444	121587444	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:121587444G>A	uc010mdg.2	-	4	1244	c.1018C>T	c.(1018-1020)CAG>TAG	p.Q340*	SNTB1_uc003ype.2_Nonsense_Mutation_p.Q340*	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	340	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GGTTTCCACTGTTTCTTGCTC	0.483													54	134					0	0	0.014410	0	0
ZFP41	286128	broad.mit.edu	37	8	144332048	144332048	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr8:144332048C>T	uc003yxw.2	+	2	393	c.35C>T	c.(34-36)CCG>CTG	p.P12L	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	12					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AAGAAGACGCCGACCCCAAGG	0.592													12	28					0	0	0.010729	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608132	84608132	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr9:84608132G>A	uc004amn.2	+	4	2794	c.2747G>A	c.(2746-2748)TGG>TAG	p.W916*		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	916						integral to membrane					0						AGGATGCTGTGGGGCCTTCCC	0.463													32	47					0	0	0.010818	0	0
MXRA5	25878	broad.mit.edu	37	X	3238719	3238719	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chrX:3238719A>G	uc004crg.3	-	5	5164	c.5007T>C	c.(5005-5007)AGT>AGC	p.S1669S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1669						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAATTGTTGTACTTGATAATC	0.438													197	64					0	0	0.014410	0	0
CTPS2	56474	broad.mit.edu	37	X	16685795	16685795	+	Silent	SNP	A	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chrX:16685795A>C	uc004cxk.2	-	12	1986	c.1242T>G	c.(1240-1242)CTT>CTG	p.L414L	CTPS2_uc004cxl.2_Silent_p.L414L|CTPS2_uc004cxm.2_Silent_p.L414L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	414	Glutamine amidotransferase type-1.				glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					CTTTCAAGTTAAGGCAGTTTC	0.323													49	24					0	0	0.014410	0	0
LEPRE1	64175	broad.mit.edu	37	1	43228097	43228097	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:43228097C>T	uc001chv.2	-	2	628	c.515G>A	c.(514-516)GGC>GAC	p.G172D	LEPRE1_uc001chw.2_Missense_Mutation_p.G172D|LEPRE1_uc001chx.3_Missense_Mutation_p.G172D|LEPRE1_uc001chy.3_Missense_Mutation_p.G172D	NM_022356	NP_071751	Q32P28	P3H1_HUMAN	leprecan 1 isoform 1	172	TPR 2.				negative regulation of cell proliferation	endoplasmic reticulum|proteinaceous extracellular matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			ovary(3)|lung(1)	4	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)			L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTCAGGATTGCCCACGAAGAA	0.468000													5	255					0	0	0.014758	0	0
ELTD1	64123	broad.mit.edu	37	1	79402059	79402059	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:79402059T>C	uc001diq.3	-	7	954	c.798A>G	c.(796-798)AAA>AAG	p.K266K		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	266	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GATGAATATGTTTCATGTTAT	0.259000													3	54					0	0	0.004672	0	0
AMY2B	280	broad.mit.edu	37	1	104122036	104122036	+	Missense_Mutation	SNP	G	A	A	rs143243690		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:104122036G>A	uc001duq.2	+	12	2066	c.1450G>A	c.(1450-1452)GTT>ATT	p.V484I	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.V484I|AMY2B_uc001dus.1_Intron	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	484					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TAAAATCTACGTTTCTGACGA	0.323000													24	124					0	0	0.021523	0	0
LRIG2	9860	broad.mit.edu	37	1	113616063	113616063	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:113616063A>T	uc001edf.1	+	1	233	c.35A>T	c.(34-36)CAG>CTG	p.Q12L	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	12						cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		CCGGAGGAGCAGTTGCTGGGG	0.642000											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	167	300					0	0	0.014410	0	0
LASS2	29956	broad.mit.edu	37	1	150940937	150940937	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:150940937C>T	uc001evy.2	-	3	612	c.225G>A	c.(223-225)CGG>CGA	p.R75R	LASS2_uc001evz.2_Silent_p.R75R|LASS2_uc009wmh.2_5'UTR	NM_181746	NP_859530	Q96G23	CERS2_HUMAN	LAG1 longevity assurance 2	75	Cytoplasmic (Potential).|Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0	all_lung(15;8.07e-35)|Lung NSC(24;7.93e-31)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GTGCCCGCAGCCGAGTTTTCT	0.557000													16	106					0	0	0.004990	0	0
KIAA0907	22889	broad.mit.edu	37	1	155899153	155899153	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:155899153C>G	uc001fmi.1	-	4	422	c.398G>C	c.(397-399)AGT>ACT	p.S133T	KIAA0907_uc001fmj.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrk.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrl.1_RNA|KIAA0907_uc001fml.1_Missense_Mutation_p.S133T|KIAA0907_uc001fmm.2_Missense_Mutation_p.S133T|KIAA0907_uc001fmo.2_Missense_Mutation_p.S133T	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	133											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TGCAGCCCCACTAAGTCGGCT	0.408000													50	111					0	0	0.014410	0	0
USF1	7391	broad.mit.edu	37	1	161011569	161011569	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:161011569T>C	uc001fxi.2	-	6	539	c.344A>G	c.(343-345)CAC>CGC	p.H115R	F11R_uc010pjw.1_5'Flank|F11R_uc001fxf.3_5'Flank|TSTD1_uc010pjx.1_5'Flank|TSTD1_uc009wtw.2_5'Flank|TSTD1_uc001fxh.3_5'Flank|USF1_uc001fxj.2_Missense_Mutation_p.H56R	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	115					cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GTAAGTATAGTGCGTCTCAGC	0.572000											OREG0013936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	140					0	0	0.012319	0	0
TMCC2	9911	broad.mit.edu	37	1	205238546	205238546	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:205238546G>T	uc001hbz.1	+	4	1660	c.1216G>T	c.(1216-1218)GTC>TTC	p.V406F	TMCC2_uc010prf.1_Missense_Mutation_p.V328F|TMCC2_uc001hca.2_Missense_Mutation_p.V181F|TMCC2_uc001hcb.1_Missense_Mutation_p.V166F|TMCC2_uc001hcc.1_Missense_Mutation_p.V27F|TMCC2_uc001hcd.2_Missense_Mutation_p.V173F	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	406						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GGTGGAGGGCGTCAAGGGCAG	0.682000													39	52					1.32136e-16	1.53491e-16	0.008740	1	0
PYROXD2	84795	broad.mit.edu	37	10	100167696	100167696	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:100167696A>G	uc001kpc.2	-	3	292	c.206T>C	c.(205-207)ATC>ACC	p.I69T	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Missense_Mutation_p.I69T	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	69	FAD (Potential).						oxidoreductase activity			central_nervous_system(1)	1						TGCACCCCCGATCACATGGCG	0.627000													11	22					0	0	0.013537	0	0
COL17A1	1308	broad.mit.edu	37	10	105793764	105793764	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:105793764A>G	uc001kxr.2	-	52	4264	c.4095T>C	c.(4093-4095)GCT>GCC	p.A1365A	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1365	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CAGCAAAGTCAGCTCCCAATA	0.587000													44	125					0	0	0.014410	0	0
PTPRE	5791	broad.mit.edu	37	10	129859261	129859261	+	Silent	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:129859261C>A	uc001lkb.2	+	8	849	c.570C>A	c.(568-570)ATC>ATA	p.I190I	PTPRE_uc009yat.2_Silent_p.I201I|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.I190I|PTPRE_uc001lkd.2_Silent_p.I132I|PTPRE_uc010quq.1_Silent_p.I91I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	190	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CAGACTACATCAATGCTTCCT	0.428000													58	109					6.09941e-20	7.15747e-20	0.014410	1	0
PAOX	196743	broad.mit.edu	37	10	135193909	135193909	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:135193909C>T	uc001lmv.2	+	2	668	c.588C>T	c.(586-588)GGC>GGT	p.G196G	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Silent_p.G196G|PAOX_uc001lmy.2_Silent_p.G196G|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_Intron|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_Intron	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	334					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		GTGTGAGCGGCACCCACAGCA	0.622000													10	92					0	0	0.006214	0	0
HPX	3263	broad.mit.edu	37	11	6453151	6453151	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr11:6453151G>C	uc001mdg.2	-	8	993	c.932C>G	c.(931-933)GCC>GGC	p.A311G	HPX_uc001mdf.2_Missense_Mutation_p.A57G|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	311	Hemopexin-like 5.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CCAGGAAAAGGCAGCATCCAC	0.542000													101	206					0	0	0.014410	0	0
ZNF214	7761	broad.mit.edu	37	11	7021930	7021930	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr11:7021930C>T	uc001mfa.2	-	3	1287	c.984G>A	c.(982-984)GAG>GAA	p.E328E	ZNF214_uc010ray.1_Silent_p.E328E|ZNF214_uc009yfh.1_Silent_p.E328E	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	328					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TATAGAATTTCTCTTCTGTGT	0.383000													3	20					0	0	0.004672	0	0
GYS2	2998	broad.mit.edu	37	12	21757442	21757442	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:21757442G>T	uc001rfb.2	-	1	340	c.85C>A	c.(85-87)CTG>ATG	p.L29M		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	29					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCAAAGAGCAGTAACTCCTCC	0.493000													12	10					9.05144e-12	1.02051e-11	0.016723	1	0
TSFM	10102	broad.mit.edu	37	12	58177005	58177005	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:58177005C>T	uc001sqi.2	+	2	219	c.170C>T	c.(169-171)ACA>ATA	p.T57I	TSFM_uc010sse.1_5'UTR|TSFM_uc001sqh.2_Missense_Mutation_p.T57I|TSFM_uc010ssf.1_Missense_Mutation_p.T57I	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	57					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CGGCGGAAAACAGGCTACTCC	0.582000											OREG0021954	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	99	329					0	0	0.014410	0	0
CCDC63	160762	broad.mit.edu	37	12	111321841	111321841	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:111321841G>C	uc001trv.1	+	8	1056	c.861G>C	c.(859-861)AAG>AAC	p.K287N	CCDC63_uc010sye.1_Missense_Mutation_p.K247N|CCDC63_uc001trw.1_Missense_Mutation_p.K202N	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	287	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TAGCTCTCAAGGCAAAGAAGC	0.488000													238	225					0	0	0.014410	0	0
UBC	7316	broad.mit.edu	37	12	125397269	125397269	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:125397269G>A	uc001ugs.3	-	2	1497	c.1049C>T	c.(1048-1050)GCC>GTC	p.A350V	UBC_uc001ugr.2_Intron|UBC_uc001ugu.1_Missense_Mutation_p.A350V|UBC_uc001ugt.2_Missense_Mutation_p.A350V|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Missense_Mutation_p.A198V	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	350	Ubiquitin-like 5.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		CTGTTTTCCGGCAAAGATCAA	0.522000													7	725					0	0	0.001984	0	0
POSTN	10631	broad.mit.edu	37	13	38154716	38154716	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr13:38154716T>G	uc001uwo.3	-	11	1629	c.1511A>C	c.(1510-1512)AAA>ACA	p.K504T	POSTN_uc010tet.1_Missense_Mutation_p.K32T|POSTN_uc001uwp.3_Missense_Mutation_p.K504T|POSTN_uc001uwr.2_Missense_Mutation_p.K504T|POSTN_uc001uwq.2_Missense_Mutation_p.K504T|POSTN_uc010teu.1_Missense_Mutation_p.K504T|POSTN_uc010tev.1_Missense_Mutation_p.K504T|POSTN_uc010tew.1_Missense_Mutation_p.K504T|POSTN_uc010tex.1_Missense_Mutation_p.K419T	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	504	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CTTATCTTGTTTTAACTTTTC	0.438000													22	47					0	0	0.018920	0	0
PCDH20	64881	broad.mit.edu	37	13	61987658	61987658	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr13:61987658A>G	uc001vid.3	-	2	938	c.574T>C	c.(574-576)TTT>CTT	p.F192L	PCDH20_uc010thj.1_Missense_Mutation_p.F192L	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	165	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ACCTTCACAAACCTGAAGTAT	0.532000													14	210					0	0	0.004990	0	0
MYH7	4625	broad.mit.edu	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr14:23886422C>T	uc001wjx.2	-	32	4565	c.4459G>A	c.(4459-4461)GCC>ACC	p.A1487T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1487	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCCTCATAGGCGTTCTTGAGT	0.597000													135	296					0	0	0.014410	0	0
BEGAIN	57596	broad.mit.edu	37	14	101005213	101005213	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr14:101005213C>T	uc010txa.1	-	6	1021	c.875G>A	c.(874-876)GGC>GAC	p.G292D	BEGAIN_uc001yhp.2_Missense_Mutation_p.G228D|BEGAIN_uc001yhq.2_Missense_Mutation_p.G292D	NM_001159531	NP_001153003	Q9BUH8	BEGIN_HUMAN	brain-enriched guanylate kinase-associated	292						cytoplasm|membrane	protein binding				0		Melanoma(154;0.212)				GGGCAGTGAGCCTGCGTAGCT	0.701000													3	25					0	0	0.009096	0	0
ADAM6	8755	broad.mit.edu	37	14	106791229	106791229	+	RNA	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr14:106791229C>T	uc010tyt.1	-	386		c.14389G>A								Parts of antibodies, mostly variable regions.												0						AATCCAGAGGCTGCACAGGAG	0.587000													72	345					0	0	0.014410	0	0
PLCB2	5330	broad.mit.edu	37	15	40594160	40594160	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:40594160T>A	uc001zld.2	-	7	881	c.580A>T	c.(580-582)AAA>TAA	p.K194*	PLCB2_uc010bbo.2_Nonsense_Mutation_p.K194*|PLCB2_uc010ucm.1_Nonsense_Mutation_p.K194*|PLCB2_uc001zle.3_Nonsense_Mutation_p.K194*	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	194					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCACTCACTTTGCCTTTGGGG	0.582000													39	82					0	0	0.011902	0	0
GLDN	342035	broad.mit.edu	37	15	51693835	51693835	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:51693835G>A	uc002aba.2	+	9	1242	c.1073G>A	c.(1072-1074)GGC>GAC	p.G358D	GLDN_uc002abb.2_Missense_Mutation_p.G234D	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	358	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		CTTCTGAATGGCAGTTACACG	0.483000											OREG0023125	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	79	150					0	0	0.014410	0	0
VPS13C	54832	broad.mit.edu	37	15	62221845	62221845	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:62221845C>G	uc002agz.2	-	51	6215	c.6141G>C	c.(6139-6141)AAG>AAC	p.K2047N	VPS13C_uc002aha.2_Missense_Mutation_p.K2004N|VPS13C_uc002ahb.1_Missense_Mutation_p.K2047N|VPS13C_uc002ahc.1_Missense_Mutation_p.K2004N	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2047					protein localization					ovary(2)	2						ATACATACAGCTTGTCAAGAA	0.368000													13	35					0	0	0.013537	0	0
CALML4	91860	broad.mit.edu	37	15	68497600	68497600	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:68497600T>G	uc002arb.2	-	1	849	c.115A>C	c.(115-117)AGC>CGC	p.S39R	CALML4_uc002arc.2_Missense_Mutation_p.S39R|CALML4_uc002ard.2_RNA|CALML4_uc002are.2_RNA|CALML4_uc010bhz.2_RNA	NM_033429	NP_219501	Q96GE6	CALL4_HUMAN	calmodulin-like 4 isoform 1	39							calcium ion binding				0						GGGCCTCGGCTGCTACCCGTG	0.612000													37	109					0	0	0.014410	0	0
MYO9A	4649	broad.mit.edu	37	15	72192125	72192125	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:72192125T>G	uc002atl.3	-	24	3846	c.3373A>C	c.(3373-3375)AGA>CGA	p.R1125R	MYO9A_uc010biq.2_Silent_p.R745R|MYO9A_uc002atn.1_Silent_p.R1106R|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1125	IQ 4.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GCTTTCCATCTTGCTTGTATG	0.438000													19	42					0	0	0.010504	0	0
NEO1	4756	broad.mit.edu	37	15	73590762	73590762	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:73590762G>A	uc002avm.3	+	27	4117	c.3975G>A	c.(3973-3975)CAG>CAA	p.Q1325Q	NEO1_uc010ukx.1_Silent_p.Q1314Q|NEO1_uc010uky.1_Silent_p.Q1272Q|NEO1_uc010ukz.1_Silent_p.Q738Q|NEO1_uc002avn.3_Silent_p.Q963Q	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1325	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						CTGATCACCAGGACCCTGAAG	0.537000													4	177					0	0	0.009096	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84581896	84581896	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:84581896C>T	uc002bjz.3	+	16	1977	c.1753C>T	c.(1753-1755)CAG>TAG	p.Q585*	ADAMTSL3_uc010bmt.1_Nonsense_Mutation_p.Q585*|ADAMTSL3_uc010bmu.1_Nonsense_Mutation_p.Q585*	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	585	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCGGGTGTGCAGGTCCGTGA	0.582000													82	170					0	0	0.014410	0	0
BTBD12	84464	broad.mit.edu	37	16	3641173	3641173	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:3641173C>G	uc002cvp.2	-	12	3093	c.2466G>C	c.(2464-2466)ATG>ATC	p.M822I		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	822	Potential.|Interaction with PLK1 and TERF2-TERF2IP.|Glu-rich.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CATCTGCCCACATTGACCTCA	0.468000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				135	288					0	0	0.014410	0	0
SMG1	23049	broad.mit.edu	37	16	18844471	18844471	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:18844471G>A	uc002dfm.2	-	51	8946	c.8583C>T	c.(8581-8583)TTC>TTT	p.F2861F	SMG1_uc010bwb.2_Silent_p.F2721F|SMG1_uc010bwa.2_Silent_p.F1592F	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2861					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TGATTTGCCGGAAATTCGAAT	0.338000													8	14					0	0	0.006214	0	0
SRCAP	10847	broad.mit.edu	37	16	30732089	30732089	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:30732089C>A	uc002dze.1	+	20	3428	c.3043C>A	c.(3043-3045)CCA>ACA	p.P1015T	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P872T|SRCAP_uc010bzz.1_Missense_Mutation_p.P585T	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1015	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGTGAACAACCCACGGGCGCC	0.602000													102	193					8.43681e-56	1.00024e-55	0.014410	1	0
CNGB1	1258	broad.mit.edu	37	16	57984372	57984372	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:57984372G>A	uc002emt.2	-	13	1012	c.947C>T	c.(946-948)GCC>GTC	p.A316V	CNGB1_uc010cdh.2_Missense_Mutation_p.A310V	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	316					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						ATCCTGGTGGGCATCCTCCCA	0.552000													5	224					0	0	0.014758	0	0
ZZEF1	23140	broad.mit.edu	37	17	3953114	3953114	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:3953114C>T	uc002fxe.2	-	37	5967	c.5903G>A	c.(5902-5904)GGG>GAG	p.G1968E	ZZEF1_uc002fxh.2_Missense_Mutation_p.G282E|ZZEF1_uc002fxi.2_Missense_Mutation_p.G203E|ZZEF1_uc002fxj.1_Missense_Mutation_p.G581E	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1968							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTCGAGTCCCCATCTGGCAA	0.498000													27	165					0	0	0.014410	0	0
KCTD11	147040	broad.mit.edu	37	17	7256830	7256830	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:7256830T>G	uc002gge.3	+	1	1623	c.569T>G	c.(568-570)GTG>GGG	p.V190G	TMEM95_uc002ggf.1_5'Flank|TMEM95_uc002ggg.1_5'Flank|TMEM95_uc002ggh.1_5'Flank	NM_001002914	NP_001002914	Q693B1	KCD11_HUMAN	potassium channel tetramerisation domain	190					cell cycle|regulation of growth	voltage-gated potassium channel complex	voltage-gated potassium channel activity				0		Prostate(122;0.157)				CGGCGGGAGGTGGTGGGCACC	0.692000													6	70					0	0	0.012319	0	0
POLR2A	5430	broad.mit.edu	37	17	7402446	7402446	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:7402446G>A	uc002ghf.3	+	9	1658	c.1424G>A	c.(1423-1425)CGC>CAC	p.R475H	POLR2A_uc002ghe.2_Missense_Mutation_p.R475H	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	475					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				CATCGGGTCCGCATTCTCCCA	0.562000													7	477					0	0	0.001984	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240900	39240900	+	Missense_Mutation	SNP	T	G	G	rs61746948		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:39240900T>G	uc010wfn.1	+	1	442	c.442T>G	c.(442-444)TTG>GTG	p.L148V		NM_033061	NP_149050			keratin associated protein 4-7												0						TCCCCGCCCCTTGTGCTGTGC	0.552000													3	24					0	0	0.009096	0	0
QRICH2	84074	broad.mit.edu	37	17	74283337	74283337	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:74283337T>A	uc002jrd.1	-	7	3629	c.3449A>T	c.(3448-3450)CAA>CTA	p.Q1150L	QRICH2_uc010wsz.1_Missense_Mutation_p.Q1076L|QRICH2_uc010dgw.1_5'UTR	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1150	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GCCCCTGTCTTGGCTCTCCCT	0.567000													49	108					0	0	0.014410	0	0
TBCD	6904	broad.mit.edu	37	17	80888515	80888515	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:80888515G>C	uc002kfz.2	+	33	3239	c.3109G>C	c.(3109-3111)GAG>CAG	p.E1037Q	TBCD_uc002kfy.1_Missense_Mutation_p.E1037Q|TBCD_uc002kgc.2_Missense_Mutation_p.E182Q|TBCD_uc002kgd.2_Missense_Mutation_p.E29Q	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	1037					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CCTTCTGAATGAGAGGTGAGT	0.597000													31	96					0	0	0.015359	0	0
HDHD2	84064	broad.mit.edu	37	18	44662721	44662721	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr18:44662721T>C	uc002lcs.2	-	2	223	c.90A>G	c.(88-90)GAA>GAG	p.E30E	HDHD2_uc002lct.2_5'UTR	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	30							hydrolase activity				0						TTTTAAGAGCTTCCTGTGCGC	0.463000													46	97					0	0	0.014410	0	0
MYO5B	4645	broad.mit.edu	37	18	47500737	47500737	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr18:47500737C>T	uc002leb.2	-	10	1593	c.1305G>A	c.(1303-1305)GGG>GGA	p.G435G	MYO5B_uc002lec.1_Silent_p.G434G	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	435	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTCCAGGACCCCGATGAAGG	0.582000													39	95					0	0	0.006230	0	0
RFX2	5990	broad.mit.edu	37	19	6013026	6013026	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:6013026C>T	uc002meb.2	-	8	1139	c.870G>A	c.(868-870)ATG>ATA	p.M290I	RFX2_uc002mec.2_Missense_Mutation_p.M265I	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GCTGCTGCCGCATGGCCATGT	0.617000													133	193					0	0	0.014410	0	0
PSMC4	5704	broad.mit.edu	37	19	40486339	40486339	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:40486339T>C	uc002omq.2	+	9	1102	c.1065T>C	c.(1063-1065)TCT>TCC	p.S355S	PSMC4_uc002omr.2_Silent_p.S324S	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	355					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAACCTCTCTGAGGAGGTTG	0.517000													166	266					0	0	0.014410	0	0
GIPR	2696	broad.mit.edu	37	19	46184876	46184876	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:46184876C>G	uc002pcu.1	+	13	1266	c.1167C>G	c.(1165-1167)AGC>AGG	p.S389R	GIPR_uc002pct.1_Missense_Mutation_p.S389R|GIPR_uc010xxp.1_Missense_Mutation_p.S353R|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	389	Helical; Name=7; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		TCCTGGTCAGCGTCCTCTACT	0.662000													29	65					0	0	0.012213	0	0
FGF21	26291	broad.mit.edu	37	19	49261265	49261265	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:49261265C>A	uc002pkn.1	+	4	990	c.418C>A	c.(418-420)CAC>AAC	p.H140N	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.H140N	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	140					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GTCCGAAGCCCACGGCCTCCC	0.632000													140	215					5.13159e-70	6.14721e-70	0.014410	1	0
SIGLEC9	27180	broad.mit.edu	37	19	51633170	51633170	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:51633170C>G	uc002pvu.2	+	7	1293	c.1226C>G	c.(1225-1227)GCA>GGA	p.A409G	SIGLEC9_uc010yct.1_Intron	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	409	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GAACCTTGGGCAGAAGACAGT	0.502000													57	158					0	0	0.014410	0	0
FBXO11	80204	broad.mit.edu	37	2	48050458	48050458	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:48050458T>G	uc010fbl.2	-	12	1302	c.1188A>C	c.(1186-1188)GCA>GCC	p.A396A	FBXO11_uc002rwe.2_Silent_p.A396A|FBXO11_uc002rwf.2_Silent_p.A396A|FBXO11_uc002rwg.1_Silent_p.A396A|FBXO11_uc010fbk.2_5'UTR	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	480	PbH1 4.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTTCAAAGCCTGCTATCCTAT	0.373000													29	27					0	0	0.009535	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808956	48808956	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:48808956A>G	uc010yol.1	+	1	1231	c.1184A>G	c.(1183-1185)GAG>GGG	p.E395G	STON1_uc002rwo.3_Missense_Mutation_p.E395G|STON1_uc010fbm.2_Missense_Mutation_p.E395G|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.E395G|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.E395G	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	395					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACTGTGGAGGAGGAGCTGATG	0.433000													11	21					0	0	0.020292	0	0
IMMT	10989	broad.mit.edu	37	2	86371415	86371415	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:86371415T>G	uc002sqz.3	-	15	2641	c.2253A>C	c.(2251-2253)GGA>GGC	p.G751G	IMMT_uc002sqy.3_Silent_p.G492G|IMMT_uc002srb.3_Silent_p.G740G|IMMT_uc002sra.3_Silent_p.G750G|IMMT_uc010ytd.1_Silent_p.G739G|IMMT_uc010yte.1_Silent_p.G704G	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	751	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						CCTGAGTGGTTCCTATTCCTA	0.478000													53	65					0	0	0.014410	0	0
VWC2L	402117	broad.mit.edu	37	2	215440518	215440518	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:215440518G>T	uc002vet.2	+	4	773	c.643G>T	c.(643-645)GAA>TAA	p.E215*	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	215						extracellular region					0						TTCGAAACGTGAATGCCAAGG	0.458000													15	57					6.49762e-13	7.39828e-13	0.006122	1	0
GIGYF2	26058	broad.mit.edu	37	2	233681744	233681744	+	Splice_Site	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:233681744T>A	uc002vti.3	+	22	2707	c.2370_splice	c.e22+2	p.Q790_splice	GIGYF2_uc002vtg.2_Splice_Site_p.Q784_splice|GIGYF2_uc002vtj.3_Splice_Site_p.Q811_splice|GIGYF2_uc002vtk.3_Splice_Site_p.Q790_splice|GIGYF2_uc002vth.3_Splice_Site_p.Q784_splice|GIGYF2_uc010zmk.1_Splice_Site|GIGYF2_uc010zml.1_Splice_Site_p.Q621_splice|GIGYF2_uc002vtq.3_Splice_Site_p.Q123_splice	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b						cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGGAAACAGGTATGTATCTGG	0.468000													19	62					0	0	0.006122	0	0
CD40	958	broad.mit.edu	37	20	44757638	44757638	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr20:44757638G>C	uc002xrg.1	+	9	870	c.793G>C	c.(793-795)GAT>CAT	p.D265H	CD40_uc002xrh.1_3'UTR|CD40_uc002xri.1_3'UTR|CD40_uc002xrj.1_RNA|CD40_uc002xrk.1_RNA|CD40_uc002xrl.1_RNA	NM_001250	NP_001241	P25942	TNR5_HUMAN	CD40 antigen isoform 1 precursor	265	Cytoplasmic (Potential).				B cell proliferation|cellular response to mechanical stimulus|inflammatory response|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein complex assembly	CD40 receptor complex|extracellular region	enzyme binding|receptor activity			lung(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)			Simvastatin(DB00641)	CACCCAGGAGGATGGCAAAGA	0.582000									Immune_Deficiency_with_Hyper-IgM				58	208					0	0	0.014410	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887763	47887763	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr20:47887763T>C	uc002xui.2	-	3	833	c.586A>G	c.(586-588)AGC>GGC	p.S196G		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	196							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATTTTGGAGCTACAAGCCTTC	0.448000													121	122					0	0	0.014410	0	0
GNAZ	2781	broad.mit.edu	37	22	23438484	23438484	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:23438484A>G	uc002zwu.1	+	2	1139	c.602A>G	c.(601-603)GAC>GGC	p.D201G	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	201	GTP (By similarity).					endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		AAGATGGTGGACGTGGGGGGG	0.567000													91	275					0	0	0.014410	0	0
CABIN1	23523	broad.mit.edu	37	22	24447425	24447425	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:24447425T>A	uc002zzi.1	+	8	922	c.795T>A	c.(793-795)ATT>ATA	p.I265I	CABIN1_uc002zzj.1_Intron|CABIN1_uc002zzl.1_Silent_p.I265I|CABIN1_uc010guk.1_Silent_p.I220I|CABIN1_uc002zzk.1_Silent_p.I220I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	265					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGCAGCCCATTCCTTTCTTCA	0.577000													37	62					0	0	0.006230	0	0
DEPDC5	9681	broad.mit.edu	37	22	32193641	32193641	+	Nonsense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:32193641A>T	uc003als.2	+	13	965	c.823A>T	c.(823-825)AAA>TAA	p.K275*	DEPDC5_uc011als.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alu.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Nonsense_Mutation_p.K275*|DEPDC5_uc003alr.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alt.1_Nonsense_Mutation_p.K247*	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	275					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CGTAACCATTAAAAAACTCTT	0.428000													20	30					0	0	0.021523	0	0
SOX10	6663	broad.mit.edu	37	22	38374016	38374016	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:38374016C>T	uc003aun.1	-	3	833	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Silent_p.Q185Q	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	185						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CCGCCTCGCCCTGGGCGGCCT	0.682000													23	34					0	0	0.021523	0	0
RAF1	5894	broad.mit.edu	37	3	12633229	12633229	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:12633229T>A	uc003bxf.3	-	11	1586	c.1171A>T	c.(1171-1173)AGG>TGG	p.R391W	RAF1_uc011aut.1_Missense_Mutation_p.R176W|RAF1_uc011auu.1_Missense_Mutation_p.R309W	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	391	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	ACCTCATTCCTGAAGGCCTGG	0.507000			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				47	79					0	0	0.014410	0	0
TOP2B	7155	broad.mit.edu	37	3	25646332	25646332	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:25646332C>A	uc003cdj.2	-	33	4393	c.4393G>T	c.(4393-4395)GAT>TAT	p.D1465Y	TOP2B_uc011awm.1_Missense_Mutation_p.D322Y|TOP2B_uc010hff.1_Missense_Mutation_p.D331Y	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1470					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GAAGCAGAATCTTCTTCATTA	0.313000													6	16					8.12818e-05	9.07516e-05	0.001984	1	0
SCN10A	6336	broad.mit.edu	37	3	38835251	38835251	+	Missense_Mutation	SNP	G	A	A	rs140609990		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:38835251G>A	uc003ciq.2	-	1	251	c.251C>T	c.(250-252)CCG>CTG	p.P84L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	84					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTGTAGAACGGATCTAGATC	0.572000													43	81					0	0	0.010771	0	0
ATP6V1A	523	broad.mit.edu	37	3	113503595	113503595	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:113503595C>G	uc003eao.2	+	5	545	c.479C>G	c.(478-480)TCG>TGG	p.S160W	ATP6V1A_uc011bik.1_Missense_Mutation_p.S127W	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	160					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						AGTGAGAACTCGCTTATCAAA	0.368000													43	67					0	0	0.010771	0	0
STXBP5L	9515	broad.mit.edu	37	3	120978006	120978006	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:120978006C>G	uc003eec.3	+	18	2089	c.1949C>G	c.(1948-1950)GCA>GGA	p.A650G	STXBP5L_uc011bji.1_Missense_Mutation_p.A650G	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	650	WD 10.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GTAAGCTCAGCATATGGAATG	0.338000													2	12					0	0	0.004672	0	0
PROM1	8842	broad.mit.edu	37	4	15989318	15989318	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:15989318T>G	uc003goo.2	-	19	2310	c.2098A>C	c.(2098-2100)AAG>CAG	p.K700Q	PROM1_uc003gor.2_Missense_Mutation_p.K700Q|PROM1_uc003gos.2_Missense_Mutation_p.K691Q|PROM1_uc003got.2_Missense_Mutation_p.K700Q|PROM1_uc003gou.2_Missense_Mutation_p.K691Q|PROM1_uc003gop.2_Missense_Mutation_p.K691Q|PROM1_uc003goq.3_Missense_Mutation_p.K691Q	NM_006017	NP_006008	O43490	PROM1_HUMAN	prominin 1 isoform 1	700	Extracellular (Potential).				camera-type eye photoreceptor cell differentiation|photoreceptor cell maintenance|retina layer formation	apical plasma membrane|cell surface|integral to plasma membrane|microvillus membrane|photoreceptor outer segment membrane|plasma membrane	beta-actinin binding|cadherin binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	7						TGAAGTATCTTGACGCTTTGG	0.383000													6	379					0	0	0.001168	0	0
RUFY3	22902	broad.mit.edu	37	4	71659564	71659564	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:71659564A>G	uc003hfr.2	+	13	1995	c.1400A>G	c.(1399-1401)GAC>GGC	p.D467G	RUFY3_uc011cay.1_Missense_Mutation_p.D403G	NM_001037442	NP_001032519	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			TTCAAACAGGACTTTGGAGAC	0.527000													23	46					0	0	0.006320	0	0
CDKL2	8999	broad.mit.edu	37	4	76532405	76532405	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:76532405T>C	uc003hiq.2	-	4	1029	c.504A>G	c.(502-504)AGA>AGG	p.R168R	CDKL2_uc011cbp.1_Silent_p.R168R|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	168	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GTTCTGGAGCTCTGTACCATC	0.453000													34	67					0	0	0.015359	0	0
TIGD2	166815	broad.mit.edu	37	4	90035227	90035227	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:90035227G>T	uc003hsk.2	+	1	1260	c.1102G>T	c.(1102-1104)GAA>TAA	p.E368*	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	368	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		TGCAATTTATGAAGTGTCAAG	0.299000													8	18					0.000274275	0.000297563	0.004482	1	0
MANBA	4126	broad.mit.edu	37	4	103585962	103585962	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:103585962A>C	uc003hwg.2	-	11	1465	c.1365T>G	c.(1363-1365)AAT>AAG	p.N455K	MANBA_uc011ces.1_Missense_Mutation_p.N398K	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	455					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		CATTTTCATTATTGCCACTCC	0.338000													4	196					0	0	0.009096	0	0
PCDH18	54510	broad.mit.edu	37	4	138450855	138450855	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:138450855G>A	uc003ihe.3	-	1	2775	c.2388C>T	c.(2386-2388)CAC>CAT	p.H796H	PCDH18_uc003ihf.3_Silent_p.H789H|PCDH18_uc011cgz.1_Silent_p.H7H|PCDH18_uc003ihg.3_Silent_p.H576H|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	796	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGTGACTGTTGTGACTCTGCC	0.498000													6	10					0	0	0.003080	0	0
ABCE1	6059	broad.mit.edu	37	4	146041306	146041306	+	Splice_Site	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:146041306G>A	uc003ijx.2	+	11	1584	c.1144_splice	c.e11+1	p.G382_splice	ABCE1_uc003ijy.2_Splice_Site_p.G382_splice|ABCE1_uc010iot.2_Splice_Site	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1						interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					GGGGAAAATGGTAAGTTTTCT	0.313000													7	11					0	0	0.001984	0	0
TCF7	6932	broad.mit.edu	37	5	133451702	133451702	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr5:133451702A>C	uc003kyt.2	+	3	615	c.419A>C	c.(418-420)CAC>CCC	p.H140P	TCF7_uc003kyu.1_Missense_Mutation_p.H25P|TCF7_uc003kyv.2_Missense_Mutation_p.H25P|TCF7_uc003kyw.2_Missense_Mutation_p.H25P|TCF7_uc003kyx.2_5'UTR|TCF7_uc003kyy.2_Missense_Mutation_p.H25P|TCF7_uc003kyz.2_Missense_Mutation_p.H25P|TCF7_uc003kza.2_Missense_Mutation_p.H25P	NM_003202	NP_003193	P36402	TCF7_HUMAN	transcription factor 7 (T-cell specific,	140					cellular response to interleukin-4|immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription regulatory region DNA binding				0		Breast(839;0.058)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCAGGGCAGCACCCCCAGCCG	0.652000													5	26					0	0	0.012213	0	0
DDR1	780	broad.mit.edu	37	6	30857025	30857025	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:30857025G>A	uc003nrr.2	+	5	494	c.235G>A	c.(235-237)GTG>ATG	p.V79M	DDR1_uc010jse.2_Missense_Mutation_p.V79M|DDR1_uc003nrq.2_Missense_Mutation_p.V79M|DDR1_uc003nrs.2_Missense_Mutation_p.V79M|DDR1_uc003nrt.2_Missense_Mutation_p.V79M|DDR1_uc011dms.1_Missense_Mutation_p.V97M|DDR1_uc011dmt.1_Missense_Mutation_p.V105M|DDR1_uc003nru.2_Missense_Mutation_p.V79M|DDR1_uc011dmu.1_Missense_Mutation_p.V79M|DDR1_uc003nrv.2_Missense_Mutation_p.V79M|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	79	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CGCAGGGTCGGTGTTTCCCAA	0.647000													184	362					0	0	0.014410	0	0
GTF2H4	2968	broad.mit.edu	37	6	30876923	30876923	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:30876923A>C	uc003nsa.1	+	2	317	c.110A>C	c.(109-111)CAC>CCC	p.H37P	GTF2H4_uc010jsf.2_Missense_Mutation_p.H37P|GTF2H4_uc011dmv.1_Intron|GTF2H4_uc003nsb.1_5'UTR|GTF2H4_uc011dmw.1_Missense_Mutation_p.H43P	NM_001517	NP_001508	Q92759	TF2H4_HUMAN	general transcription factor IIH, polypeptide 4,	37					mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3						TTGTATGGGCACCCTGCCACA	0.517000								NER					5	28					0	0	0.007413	0	0
PREP	5550	broad.mit.edu	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:105825364C>G	uc003prc.2	-	3	354	c.151G>C	c.(151-153)GTG>CTG	p.V51L		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	51					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	AGAAATGGCACAGTAATCTTA	0.353000													39	62					0	0	0.005524	0	0
ROS1	6098	broad.mit.edu	37	6	117622147	117622147	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:117622147T>G	uc003pxp.1	-	42	6922	c.6723A>C	c.(6721-6723)GAA>GAC	p.E2241D	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2241	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTCAAAGCTTTCATTTATGA	0.333000			T	GOPC|ROS1	glioblastoma|NSCLC								5	46					0	0	0.004007	0	0
RAET1L	154064	broad.mit.edu	37	6	150342042	150342042	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:150342042T>A	uc011eei.1	-	3	691	c.630A>T	c.(628-630)GGA>GGT	p.G210G		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	210	MHC class I alpha-2 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TCCTGTTACCTCCTGCACTTG	0.468000													80	206					0	0	0.014410	0	0
NSUN5P1	155400	broad.mit.edu	37	7	75045841	75045841	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:75045841A>G	uc003udh.1	+	4	608	c.565A>G	c.(565-567)AGA>GGA	p.R189G	NSUN5P1_uc003ude.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udf.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udg.1_Missense_Mutation_p.R143G	NM_145645	NP_663620			NOL1/NOP2/Sun domain family, member 5B												0						GAGACAGCAAAGAGCCGCAGC	0.572000													63	86					0	0	0.014410	0	0
ZAN	7455	broad.mit.edu	37	7	100383746	100383746	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:100383746G>T	uc003uwj.2	+	38	7127	c.6962G>T	c.(6961-6963)AGC>ATC	p.S2321I	ZAN_uc003uwk.2_Missense_Mutation_p.S2321I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.S371I	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2321	VWFC 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACAGCAACAGCAATTGTGTC	0.632000													239	210					1.72261e-137	2.08527e-137	0.014410	1	0
MUC17	140453	broad.mit.edu	37	7	100692247	100692247	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:100692247G>A	uc003uxp.1	+	5	12710	c.12657G>A	c.(12655-12657)ACG>ACA	p.T4219T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4219	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGACATTCACGGAACAGGTAA	0.507000													46	117					0	0	0.014410	0	0
ASB15	142685	broad.mit.edu	37	7	123264837	123264837	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:123264837C>A	uc003vku.1	+	8	958	c.666C>A	c.(664-666)CAC>CAA	p.H222Q	ASB15_uc003vkv.1_Missense_Mutation_p.H222Q|ASB15_uc003vkw.1_Missense_Mutation_p.H222Q	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	222	ANK 4.				intracellular signal transduction					skin(2)|lung(1)	3						AGTATGGTCACTGTGACGTGT	0.468000											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	14					0.000132079	0.000146049	0.008871	1	0
MGAM	8972	broad.mit.edu	37	7	141800677	141800677	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:141800677T>G	uc003vwy.2	+	45	5316	c.5262T>G	c.(5260-5262)GAT>GAG	p.D1754E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1754	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTGGGATGATGGGCAAAGCA	0.502000													13	14					0	0	0.003163	0	0
BMP1	649	broad.mit.edu	37	8	22022973	22022973	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:22022973C>A	uc003xbg.2	+	1	299	c.55C>A	c.(55-57)CCC>ACC	p.P19T	BMP1_uc011kzb.1_RNA|BMP1_uc003xba.2_Missense_Mutation_p.P19T|BMP1_uc003xbb.2_Missense_Mutation_p.P19T|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_5'UTR|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_5'UTR|BMP1_uc011kzc.1_5'UTR|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	19					cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GCTCCCGCGTCCCGGCCGGCC	0.721000													4	18					0.000157383	0.000172372	0.003080	1	0
CHRNB3	1142	broad.mit.edu	37	8	42586819	42586819	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:42586819C>T	uc003xpi.1	+	5	497	c.369C>T	c.(367-369)GGC>GGT	p.G123G		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	123	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTGCTGACGGCCGCTTCGAAG	0.498000													4	96					0	0	0.009096	0	0
SNTB1	6641	broad.mit.edu	37	8	121587444	121587444	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:121587444G>A	uc010mdg.2	-	4	1244	c.1018C>T	c.(1018-1020)CAG>TAG	p.Q340*	SNTB1_uc003ype.2_Nonsense_Mutation_p.Q340*	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	340	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GGTTTCCACTGTTTCTTGCTC	0.483000													13	40					0	0	0.020292	0	0
ZFP41	286128	broad.mit.edu	37	8	144332048	144332048	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:144332048C>T	uc003yxw.2	+	2	393	c.35C>T	c.(34-36)CCG>CTG	p.P12L	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	12					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AAGAAGACGCCGACCCCAAGG	0.592000													11	25					0	0	0.010729	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608132	84608132	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr9:84608132G>A	uc004amn.2	+	4	2794	c.2747G>A	c.(2746-2748)TGG>TAG	p.W916*		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	916						integral to membrane					0						AGGATGCTGTGGGGCCTTCCC	0.463000													14	36					0	0	0.003163	0	0
MXRA5	25878	broad.mit.edu	37	X	3238719	3238719	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chrX:3238719A>G	uc004crg.3	-	5	5164	c.5007T>C	c.(5005-5007)AGT>AGC	p.S1669S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1669						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAATTGTTGTACTTGATAATC	0.438000													138	56					0	0	0.014410	0	0
CTPS2	56474	broad.mit.edu	37	X	16685795	16685795	+	Silent	SNP	A	C	C			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chrX:16685795A>C	uc004cxk.2	-	12	1986	c.1242T>G	c.(1240-1242)CTT>CTG	p.L414L	CTPS2_uc004cxl.2_Silent_p.L414L|CTPS2_uc004cxm.2_Silent_p.L414L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	414	Glutamine amidotransferase type-1.				glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					CTTTCAAGTTAAGGCAGTTTC	0.323000													103	34					0	0	0.014410	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418													6	86					0	0	0.001984	0	0
ELTD1	64123	broad.mit.edu	37	1	79402059	79402059	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:79402059T>C	uc001diq.3	-	7	954	c.798A>G	c.(796-798)AAA>AAG	p.K266K		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	266	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		GATGAATATGTTTCATGTTAT	0.259													23	123					0	0	0.012319	0	0
AMY2B	280	broad.mit.edu	37	1	104122036	104122036	+	Missense_Mutation	SNP	G	A	A	rs143243690		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:104122036G>A	uc001duq.2	+	12	2066	c.1450G>A	c.(1450-1452)GTT>ATT	p.V484I	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.V484I|AMY2B_uc001dus.1_Intron	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	484					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TAAAATCTACGTTTCTGACGA	0.323													170	759					0	0	0.014410	0	0
LRIG2	9860	broad.mit.edu	37	1	113616063	113616063	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:113616063A>T	uc001edf.1	+	1	233	c.35A>T	c.(34-36)CAG>CTG	p.Q12L	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	12						cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		CCGGAGGAGCAGTTGCTGGGG	0.642											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	106	190					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	1	146466030	146466030	+	Missense_Mutation	SNP	C	G	G	rs116184198	by1000genomes	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:146466030C>G	uc010ozl.1	+	13	1647	c.1355C>G	c.(1354-1356)ACC>AGC	p.T452S		NM_017940	NP_060410			hypothetical protein LOC55672																		CAGCACATCACCTTTGCCCTT	0.433													7	191					0	0	0.003080	0	0
KIAA0907	22889	broad.mit.edu	37	1	155899153	155899153	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:155899153C>G	uc001fmi.1	-	4	422	c.398G>C	c.(397-399)AGT>ACT	p.S133T	KIAA0907_uc001fmj.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrk.1_Missense_Mutation_p.S133T|KIAA0907_uc009wrl.1_RNA|KIAA0907_uc001fml.1_Missense_Mutation_p.S133T|KIAA0907_uc001fmm.2_Missense_Mutation_p.S133T|KIAA0907_uc001fmo.2_Missense_Mutation_p.S133T	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	133											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TGCAGCCCCACTAAGTCGGCT	0.408													45	73					0	0	0.014410	0	0
USF1	7391	broad.mit.edu	37	1	161011569	161011569	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:161011569T>C	uc001fxi.2	-	6	539	c.344A>G	c.(343-345)CAC>CGC	p.H115R	F11R_uc010pjw.1_5'Flank|F11R_uc001fxf.3_5'Flank|TSTD1_uc010pjx.1_5'Flank|TSTD1_uc009wtw.2_5'Flank|TSTD1_uc001fxh.3_5'Flank|USF1_uc001fxj.2_Missense_Mutation_p.H56R	NM_007122	NP_009053	P22415	USF1_HUMAN	upstream stimulatory factor 1 isoform 1	115					cellular response to insulin stimulus|glucose homeostasis|late viral mRNA transcription|lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter by glucose|response to hypoxia|response to UV	transcription factor complex	bHLH transcription factor binding|histone deacetylase binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(52;6.73e-18)|Breast(13;0.012)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GTAAGTATAGTGCGTCTCAGC	0.572											OREG0013936	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	102					0	0	0.008291	0	0
PYROXD2	84795	broad.mit.edu	37	10	100167696	100167696	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:100167696A>G	uc001kpc.2	-	3	292	c.206T>C	c.(205-207)ATC>ACC	p.I69T	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA|PYROXD2_uc010qpe.1_Missense_Mutation_p.I69T	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	69	FAD (Potential).						oxidoreductase activity			central_nervous_system(1)	1						TGCACCCCCGATCACATGGCG	0.627													4	12					0	0	0.009096	0	0
COL17A1	1308	broad.mit.edu	37	10	105793764	105793764	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:105793764A>G	uc001kxr.2	-	52	4264	c.4095T>C	c.(4093-4095)GCT>GCC	p.A1365A	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1365	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CAGCAAAGTCAGCTCCCAATA	0.587													33	86					0	0	0.015359	0	0
PTPRE	5791	broad.mit.edu	37	10	129859261	129859261	+	Silent	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:129859261C>A	uc001lkb.2	+	8	849	c.570C>A	c.(568-570)ATC>ATA	p.I190I	PTPRE_uc009yat.2_Silent_p.I201I|PTPRE_uc010qup.1_RNA|PTPRE_uc009yau.2_Silent_p.I190I|PTPRE_uc001lkd.2_Silent_p.I132I|PTPRE_uc010quq.1_Silent_p.I91I	NM_006504	NP_006495	P23469	PTPRE_HUMAN	protein tyrosine phosphatase, receptor type, E	190	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				negative regulation of insulin receptor signaling pathway|protein phosphorylation	cytoplasm|integral to membrane|intermediate filament cytoskeleton|nucleus|plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(1)	1		all_epithelial(44;1.66e-05)|all_lung(145;0.00456)|Lung NSC(174;0.0066)|all_neural(114;0.0936)|Colorectal(57;0.141)|Breast(234;0.166)|Melanoma(40;0.203)				CAGACTACATCAATGCTTCCT	0.428													35	60					3.90053e-15	4.37889e-15	0.012213	1	0
PAOX	196743	broad.mit.edu	37	10	135193909	135193909	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:135193909C>T	uc001lmv.2	+	2	668	c.588C>T	c.(586-588)GGC>GGT	p.G196G	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Silent_p.G196G|PAOX_uc001lmy.2_Silent_p.G196G|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_Intron|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_Intron	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	334					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		GTGTGAGCGGCACCCACAGCA	0.622													7	57					0	0	0.001984	0	0
HPX	3263	broad.mit.edu	37	11	6453151	6453151	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr11:6453151G>C	uc001mdg.2	-	8	993	c.932C>G	c.(931-933)GCC>GGC	p.A311G	HPX_uc001mdf.2_Missense_Mutation_p.A57G|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	311	Hemopexin-like 5.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CCAGGAAAAGGCAGCATCCAC	0.542													83	158					0	0	0.014410	0	0
GYS2	2998	broad.mit.edu	37	12	21757442	21757442	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:21757442G>T	uc001rfb.2	-	1	340	c.85C>A	c.(85-87)CTG>ATG	p.L29M		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	29					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCAAAGAGCAGTAACTCCTCC	0.493													158	156					1.46278e-64	1.7583e-64	0.014410	1	0
TSFM	10102	broad.mit.edu	37	12	58177005	58177005	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:58177005C>T	uc001sqi.2	+	2	219	c.170C>T	c.(169-171)ACA>ATA	p.T57I	TSFM_uc010sse.1_5'UTR|TSFM_uc001sqh.2_Missense_Mutation_p.T57I|TSFM_uc010ssf.1_Missense_Mutation_p.T57I	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	57					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CGGCGGAAAACAGGCTACTCC	0.582											OREG0021954	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	76	190					0	0	0.014410	0	0
CCDC63	160762	broad.mit.edu	37	12	111321841	111321841	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr12:111321841G>C	uc001trv.1	+	8	1056	c.861G>C	c.(859-861)AAG>AAC	p.K287N	CCDC63_uc010sye.1_Missense_Mutation_p.K247N|CCDC63_uc001trw.1_Missense_Mutation_p.K202N	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	287	Potential.									skin(6)|ovary(1)|pancreas(1)	8						TAGCTCTCAAGGCAAAGAAGC	0.488													118	134					0	0	0.014410	0	0
LOC284232	284232	broad.mit.edu	37	13	19415783	19415783	+	RNA	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr13:19415783G>A	uc010tcj.1	-	1		c.30327C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AGCAGCAGAAGATGTACTATG	0.299													3	51					0	0	0.004672	0	0
POSTN	10631	broad.mit.edu	37	13	38154716	38154716	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr13:38154716T>G	uc001uwo.3	-	11	1629	c.1511A>C	c.(1510-1512)AAA>ACA	p.K504T	POSTN_uc010tet.1_Missense_Mutation_p.K32T|POSTN_uc001uwp.3_Missense_Mutation_p.K504T|POSTN_uc001uwr.2_Missense_Mutation_p.K504T|POSTN_uc001uwq.2_Missense_Mutation_p.K504T|POSTN_uc010teu.1_Missense_Mutation_p.K504T|POSTN_uc010tev.1_Missense_Mutation_p.K504T|POSTN_uc010tew.1_Missense_Mutation_p.K504T|POSTN_uc010tex.1_Missense_Mutation_p.K419T	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	504	FAS1 4.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CTTATCTTGTTTTAACTTTTC	0.438													120	220					0	0	0.014410	0	0
PCDH20	64881	broad.mit.edu	37	13	61987658	61987658	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr13:61987658A>G	uc001vid.3	-	2	938	c.574T>C	c.(574-576)TTT>CTT	p.F192L	PCDH20_uc010thj.1_Missense_Mutation_p.F192L	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	165	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ACCTTCACAAACCTGAAGTAT	0.532													14	152					0	0	0.003163	0	0
MYH7	4625	broad.mit.edu	37	14	23886422	23886422	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr14:23886422C>T	uc001wjx.2	-	32	4565	c.4459G>A	c.(4459-4461)GCC>ACC	p.A1487T		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1487	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TCCTCATAGGCGTTCTTGAGT	0.597													66	158					0	0	0.014410	0	0
ADAM21	8747	broad.mit.edu	37	14	70925714	70925714	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr14:70925714G>T	uc001xmd.2	+	1	1498	c.1498G>T	c.(1498-1500)GCC>TCC	p.A500S		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	500	Cys-rich.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TAGTGACAGTGCCTACTGCTA	0.423													17	176					2.23348e-06	2.41622e-06	0.004007	1	0
ADAM6	8755	broad.mit.edu	37	14	106791229	106791229	+	RNA	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr14:106791229C>T	uc010tyt.1	-	386		c.14389G>A								Parts of antibodies, mostly variable regions.												0						AATCCAGAGGCTGCACAGGAG	0.587													53	254					0	0	0.014410	0	0
PLCB2	5330	broad.mit.edu	37	15	40594160	40594160	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:40594160T>A	uc001zld.2	-	7	881	c.580A>T	c.(580-582)AAA>TAA	p.K194*	PLCB2_uc010bbo.2_Nonsense_Mutation_p.K194*|PLCB2_uc010ucm.1_Nonsense_Mutation_p.K194*|PLCB2_uc001zle.3_Nonsense_Mutation_p.K194*	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	194					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CCACTCACTTTGCCTTTGGGG	0.582													20	44					0	0	0.008871	0	0
GLDN	342035	broad.mit.edu	37	15	51693835	51693835	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:51693835G>A	uc002aba.2	+	9	1242	c.1073G>A	c.(1072-1074)GGC>GAC	p.G358D	GLDN_uc002abb.2_Missense_Mutation_p.G234D	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	358	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		CTTCTGAATGGCAGTTACACG	0.483											OREG0023125	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	95					0	0	0.014410	0	0
VPS13C	54832	broad.mit.edu	37	15	62221845	62221845	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:62221845C>G	uc002agz.2	-	51	6215	c.6141G>C	c.(6139-6141)AAG>AAC	p.K2047N	VPS13C_uc002aha.2_Missense_Mutation_p.K2004N|VPS13C_uc002ahb.1_Missense_Mutation_p.K2047N|VPS13C_uc002ahc.1_Missense_Mutation_p.K2004N	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2047					protein localization					ovary(2)	2						ATACATACAGCTTGTCAAGAA	0.368													25	43					0	0	0.005443	0	0
CALML4	91860	broad.mit.edu	37	15	68497600	68497600	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:68497600T>G	uc002arb.2	-	1	849	c.115A>C	c.(115-117)AGC>CGC	p.S39R	CALML4_uc002arc.2_Missense_Mutation_p.S39R|CALML4_uc002ard.2_RNA|CALML4_uc002are.2_RNA|CALML4_uc010bhz.2_RNA	NM_033429	NP_219501	Q96GE6	CALL4_HUMAN	calmodulin-like 4 isoform 1	39							calcium ion binding				0						GGGCCTCGGCTGCTACCCGTG	0.612													25	55					0	0	0.017118	0	0
MYO9A	4649	broad.mit.edu	37	15	72192125	72192125	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:72192125T>G	uc002atl.3	-	24	3846	c.3373A>C	c.(3373-3375)AGA>CGA	p.R1125R	MYO9A_uc010biq.2_Silent_p.R745R|MYO9A_uc002atn.1_Silent_p.R1106R|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1125	IQ 4.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GCTTTCCATCTTGCTTGTATG	0.438													42	69					0	0	0.007835	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84581896	84581896	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:84581896C>T	uc002bjz.3	+	16	1977	c.1753C>T	c.(1753-1755)CAG>TAG	p.Q585*	ADAMTSL3_uc010bmt.1_Nonsense_Mutation_p.Q585*|ADAMTSL3_uc010bmu.1_Nonsense_Mutation_p.Q585*	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	585	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GCCGGGTGTGCAGGTCCGTGA	0.582													47	116					0	0	0.014410	0	0
BTBD12	84464	broad.mit.edu	37	16	3641173	3641173	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:3641173C>G	uc002cvp.2	-	12	3093	c.2466G>C	c.(2464-2466)ATG>ATC	p.M822I		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	822	Potential.|Interaction with PLK1 and TERF2-TERF2IP.|Glu-rich.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CATCTGCCCACATTGACCTCA	0.468								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				64	167					0	0	0.014410	0	0
SMG1	23049	broad.mit.edu	37	16	18844471	18844471	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:18844471G>A	uc002dfm.2	-	51	8946	c.8583C>T	c.(8581-8583)TTC>TTT	p.F2861F	SMG1_uc010bwb.2_Silent_p.F2721F|SMG1_uc010bwa.2_Silent_p.F1592F	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2861					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						TGATTTGCCGGAAATTCGAAT	0.338													26	65					0	0	0.018920	0	0
SRCAP	10847	broad.mit.edu	37	16	30732089	30732089	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:30732089C>A	uc002dze.1	+	20	3428	c.3043C>A	c.(3043-3045)CCA>ACA	p.P1015T	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P872T|SRCAP_uc010bzz.1_Missense_Mutation_p.P585T	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1015	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GGTGAACAACCCACGGGCGCC	0.602													83	150					1.32764e-51	1.57989e-51	0.014410	1	0
ZZEF1	23140	broad.mit.edu	37	17	3953114	3953114	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:3953114C>T	uc002fxe.2	-	37	5967	c.5903G>A	c.(5902-5904)GGG>GAG	p.G1968E	ZZEF1_uc002fxh.2_Missense_Mutation_p.G282E|ZZEF1_uc002fxi.2_Missense_Mutation_p.G203E|ZZEF1_uc002fxj.1_Missense_Mutation_p.G581E	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	1968							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCTCGAGTCCCCATCTGGCAA	0.498													18	106					0	0	0.014410	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904204	21904204	+	RNA	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:21904204G>T	uc002gza.2	+	1		c.143G>T				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ctgccaggacggtgttcgggt	0													5	51					1.024e-07	1.11794e-07	0.014758	1	0
QRICH2	84074	broad.mit.edu	37	17	74283337	74283337	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:74283337T>A	uc002jrd.1	-	7	3629	c.3449A>T	c.(3448-3450)CAA>CTA	p.Q1150L	QRICH2_uc010wsz.1_Missense_Mutation_p.Q1076L|QRICH2_uc010dgw.1_5'UTR	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1150	Potential.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GCCCCTGTCTTGGCTCTCCCT	0.567													28	69					0	0	0.005443	0	0
TBCD	6904	broad.mit.edu	37	17	80888515	80888515	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr17:80888515G>C	uc002kfz.2	+	33	3239	c.3109G>C	c.(3109-3111)GAG>CAG	p.E1037Q	TBCD_uc002kfy.1_Missense_Mutation_p.E1037Q|TBCD_uc002kgc.2_Missense_Mutation_p.E182Q|TBCD_uc002kgd.2_Missense_Mutation_p.E29Q	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	1037					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			CCTTCTGAATGAGAGGTGAGT	0.597													25	68					0	0	0.018920	0	0
HDHD2	84064	broad.mit.edu	37	18	44662721	44662721	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr18:44662721T>C	uc002lcs.2	-	2	223	c.90A>G	c.(88-90)GAA>GAG	p.E30E	HDHD2_uc002lct.2_5'UTR	NM_032124	NP_115500	Q9H0R4	HDHD2_HUMAN	haloacid dehalogenase-like hydrolase domain	30							hydrolase activity				0						TTTTAAGAGCTTCCTGTGCGC	0.463													66	117					0	0	0.014410	0	0
MYO5B	4645	broad.mit.edu	37	18	47500737	47500737	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr18:47500737C>T	uc002leb.2	-	10	1593	c.1305G>A	c.(1303-1305)GGG>GGA	p.G435G	MYO5B_uc002lec.1_Silent_p.G434G	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	435	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TGTCCAGGACCCCGATGAAGG	0.582													28	49					0	0	0.006320	0	0
RFX2	5990	broad.mit.edu	37	19	6013026	6013026	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:6013026C>T	uc002meb.2	-	8	1139	c.870G>A	c.(868-870)ATG>ATA	p.M290I	RFX2_uc002mec.2_Missense_Mutation_p.M265I	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	290					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						GCTGCTGCCGCATGGCCATGT	0.617													72	143					0	0	0.014410	0	0
PSMC4	5704	broad.mit.edu	37	19	40486339	40486339	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:40486339T>C	uc002omq.2	+	9	1102	c.1065T>C	c.(1063-1065)TCT>TCC	p.S355S	PSMC4_uc002omr.2_Silent_p.S324S	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	355					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TGAACCTCTCTGAGGAGGTTG	0.517													83	162					0	0	0.014410	0	0
GIPR	2696	broad.mit.edu	37	19	46184876	46184876	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:46184876C>G	uc002pcu.1	+	13	1266	c.1167C>G	c.(1165-1167)AGC>AGG	p.S389R	GIPR_uc002pct.1_Missense_Mutation_p.S389R|GIPR_uc010xxp.1_Missense_Mutation_p.S353R|GIPR_uc010xxq.1_RNA	NM_000164	NP_000155	P48546	GIPR_HUMAN	gastric inhibitory polypeptide receptor	389	Helical; Name=7; (Potential).				generation of precursor metabolites and energy|response to nutrient	integral to membrane|plasma membrane				skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0056)|GBM - Glioblastoma multiforme(486;0.0832)|Epithelial(262;0.199)		TCCTGGTCAGCGTCCTCTACT	0.662													27	55					0	0	0.004656	0	0
FGF21	26291	broad.mit.edu	37	19	49261265	49261265	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:49261265C>A	uc002pkn.1	+	4	990	c.418C>A	c.(418-420)CAC>AAC	p.H140N	FUT1_uc002pkk.2_5'Flank|FUT1_uc002pkm.1_5'Flank|FGF21_uc002pko.1_Missense_Mutation_p.H140N	NM_019113	NP_061986	Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21 precursor	140					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)	1		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		GTCCGAAGCCCACGGCCTCCC	0.632													62	123					3.57465e-26	4.12993e-26	0.014410	1	0
SIGLEC9	27180	broad.mit.edu	37	19	51633170	51633170	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:51633170C>G	uc002pvu.2	+	7	1293	c.1226C>G	c.(1225-1227)GCA>GGA	p.A409G	SIGLEC9_uc010yct.1_Intron	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	409	Cytoplasmic (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		GAACCTTGGGCAGAAGACAGT	0.502													31	89					0	0	0.010818	0	0
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr19:58385546G>T	uc002qqo.2	-	3	1484	c.1212C>A	c.(1210-1212)GAC>GAA	p.D404E	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	404					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						AATGTTTTTTGTCAGTGTGAA	0.393													4	14					0.000602214	0.000645617	0.014758	1	0
FBXO11	80204	broad.mit.edu	37	2	48050458	48050458	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:48050458T>G	uc010fbl.2	-	12	1302	c.1188A>C	c.(1186-1188)GCA>GCC	p.A396A	FBXO11_uc002rwe.2_Silent_p.A396A|FBXO11_uc002rwf.2_Silent_p.A396A|FBXO11_uc002rwg.1_Silent_p.A396A|FBXO11_uc010fbk.2_5'UTR	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	480	PbH1 4.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTTCAAAGCCTGCTATCCTAT	0.373													27	50					0	0	0.005443	0	0
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48808956	48808956	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:48808956A>G	uc010yol.1	+	1	1231	c.1184A>G	c.(1183-1185)GAG>GGG	p.E395G	STON1_uc002rwo.3_Missense_Mutation_p.E395G|STON1_uc010fbm.2_Missense_Mutation_p.E395G|STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.E395G|STON1_uc002rwr.2_RNA|STON1_uc002rwq.2_Missense_Mutation_p.E395G	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	395					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			ACTGTGGAGGAGGAGCTGATG	0.433													37	83					0	0	0.019004	0	0
IMMT	10989	broad.mit.edu	37	2	86371415	86371415	+	Silent	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:86371415T>G	uc002sqz.3	-	15	2641	c.2253A>C	c.(2251-2253)GGA>GGC	p.G751G	IMMT_uc002sqy.3_Silent_p.G492G|IMMT_uc002srb.3_Silent_p.G740G|IMMT_uc002sra.3_Silent_p.G750G|IMMT_uc010ytd.1_Silent_p.G739G|IMMT_uc010yte.1_Silent_p.G704G	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	751	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						CCTGAGTGGTTCCTATTCCTA	0.478													38	53					0	0	0.019004	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95515029	95515029	+	RNA	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:95515029G>A	uc010fhp.2	-	4		c.422C>T				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						AAATTATAGCGAATAAAAGTG	0.323													11	191					0	0	0.010504	0	0
VWC2L	402117	broad.mit.edu	37	2	215440518	215440518	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:215440518G>T	uc002vet.2	+	4	773	c.643G>T	c.(643-645)GAA>TAA	p.E215*	VWC2L_uc010zjl.1_3'UTR	NM_001080500	NP_001073969	B2RUY7	VWC2L_HUMAN	von Willebrand factor C domain-containing	215						extracellular region					0						TTCGAAACGTGAATGCCAAGG	0.458													78	178					6.11987e-43	7.21054e-43	0.014410	1	0
GIGYF2	26058	broad.mit.edu	37	2	233681744	233681744	+	Splice_Site	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:233681744T>A	uc002vti.3	+	22	2707	c.2370_splice	c.e22+2	p.Q790_splice	GIGYF2_uc002vtg.2_Splice_Site_p.Q784_splice|GIGYF2_uc002vtj.3_Splice_Site_p.Q811_splice|GIGYF2_uc002vtk.3_Splice_Site_p.Q790_splice|GIGYF2_uc002vth.3_Splice_Site_p.Q784_splice|GIGYF2_uc010zmk.1_Splice_Site|GIGYF2_uc010zml.1_Splice_Site_p.Q621_splice|GIGYF2_uc002vtq.3_Splice_Site_p.Q123_splice	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b						cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGGAAACAGGTATGTATCTGG	0.468													81	209					0	0	0.014410	0	0
C20orf12	55184	broad.mit.edu	37	20	18433281	18433281	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr20:18433281C>G	uc010zsa.1	-	6	787	c.578G>C	c.(577-579)AGA>ACA	p.R193T	C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Missense_Mutation_p.D24H|C20orf12_uc002wqq.3_Missense_Mutation_p.R174T|C20orf12_uc002wqu.1_Intron|C20orf12_uc010gct.1_Intron	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	Error:Variant_position_missing_in_Q9NVP4_after_alignment						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				GGTGGGTGGTCTAGAACCTGA	0.423													6	22					0	0	0.001984	0	0
FRG1B	284802	broad.mit.edu	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr20:29628263A>G	uc010ztl.1	+	3	207	c.175A>G	c.(175-177)ATT>GTT	p.I59V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.I11V					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TAGCTGCTTTATTAGATGCAA	0.363													4	124					0	0	0.004482	0	0
CD40	958	broad.mit.edu	37	20	44757638	44757638	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr20:44757638G>C	uc002xrg.1	+	9	870	c.793G>C	c.(793-795)GAT>CAT	p.D265H	CD40_uc002xrh.1_3'UTR|CD40_uc002xri.1_3'UTR|CD40_uc002xrj.1_RNA|CD40_uc002xrk.1_RNA|CD40_uc002xrl.1_RNA	NM_001250	NP_001241	P25942	TNR5_HUMAN	CD40 antigen isoform 1 precursor	265	Cytoplasmic (Potential).				B cell proliferation|cellular response to mechanical stimulus|inflammatory response|platelet activation|positive regulation of endothelial cell apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein complex assembly	CD40 receptor complex|extracellular region	enzyme binding|receptor activity			lung(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)			Simvastatin(DB00641)	CACCCAGGAGGATGGCAAAGA	0.582									Immune_Deficiency_with_Hyper-IgM				30	136					0	0	0.015359	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887763	47887763	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr20:47887763T>C	uc002xui.2	-	3	833	c.586A>G	c.(586-588)AGC>GGC	p.S196G		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	196							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			ATTTTGGAGCTACAAGCCTTC	0.448													106	138					0	0	0.014410	0	0
GNAZ	2781	broad.mit.edu	37	22	23438484	23438484	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:23438484A>G	uc002zwu.1	+	2	1139	c.602A>G	c.(601-603)GAC>GGC	p.D201G	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	201	GTP (By similarity).					endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		AAGATGGTGGACGTGGGGGGG	0.567													60	136					0	0	0.014410	0	0
CABIN1	23523	broad.mit.edu	37	22	24447425	24447425	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:24447425T>A	uc002zzi.1	+	8	922	c.795T>A	c.(793-795)ATT>ATA	p.I265I	CABIN1_uc002zzj.1_Intron|CABIN1_uc002zzl.1_Silent_p.I265I|CABIN1_uc010guk.1_Silent_p.I220I|CABIN1_uc002zzk.1_Silent_p.I220I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	265					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TGCAGCCCATTCCTTTCTTCA	0.577													21	29					0	0	0.012319	0	0
DEPDC5	9681	broad.mit.edu	37	22	32193641	32193641	+	Nonsense_Mutation	SNP	A	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:32193641A>T	uc003als.2	+	13	965	c.823A>T	c.(823-825)AAA>TAA	p.K275*	DEPDC5_uc011als.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alu.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Nonsense_Mutation_p.K275*|DEPDC5_uc003alr.1_Nonsense_Mutation_p.K275*|DEPDC5_uc011alt.1_Nonsense_Mutation_p.K247*	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	275					intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						CGTAACCATTAAAAAACTCTT	0.428													23	26					0	0	0.004656	0	0
SOX10	6663	broad.mit.edu	37	22	38374016	38374016	+	Silent	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:38374016C>T	uc003aun.1	-	3	833	c.555G>A	c.(553-555)CAG>CAA	p.Q185Q	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Silent_p.Q185Q	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	185						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CCGCCTCGCCCTGGGCGGCCT	0.682													15	35					0	0	0.004007	0	0
UPK3A	7380	broad.mit.edu	37	22	45683306	45683306	+	Silent	SNP	A	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr22:45683306A>C	uc003bfy.2	+	3	468	c.462A>C	c.(460-462)GCA>GCC	p.A154A	UPK3A_uc010gzy.2_Intron	NM_006953	NP_008884	O75631	UPK3A_HUMAN	uroplakin 3A precursor	154	Lumenal (Potential).				epithelial cell differentiation	endoplasmic reticulum membrane|integral to membrane					0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TCTGTAACGCACCCCTGTCGG	0.602													4	8					0	0	0.001984	0	0
RAF1	5894	broad.mit.edu	37	3	12633229	12633229	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:12633229T>A	uc003bxf.3	-	11	1586	c.1171A>T	c.(1171-1173)AGG>TGG	p.R391W	RAF1_uc011aut.1_Missense_Mutation_p.R176W|RAF1_uc011auu.1_Missense_Mutation_p.R309W	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	391	Protein kinase.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	ACCTCATTCCTGAAGGCCTGG	0.507			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				24	56					0	0	0.005443	0	0
TOP2B	7155	broad.mit.edu	37	3	25646332	25646332	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:25646332C>A	uc003cdj.2	-	33	4393	c.4393G>T	c.(4393-4395)GAT>TAT	p.D1465Y	TOP2B_uc011awm.1_Missense_Mutation_p.D322Y|TOP2B_uc010hff.1_Missense_Mutation_p.D331Y	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1470					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GAAGCAGAATCTTCTTCATTA	0.313													44	81					1.61004e-24	1.84225e-24	0.014410	1	0
SCN10A	6336	broad.mit.edu	37	3	38835251	38835251	+	Missense_Mutation	SNP	G	A	A	rs140609990		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:38835251G>A	uc003ciq.2	-	1	251	c.251C>T	c.(250-252)CCG>CTG	p.P84L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	84					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTGTAGAACGGATCTAGATC	0.572													83	187					0	0	0.014410	0	0
ATP6V1A	523	broad.mit.edu	37	3	113503595	113503595	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:113503595C>G	uc003eao.2	+	5	545	c.479C>G	c.(478-480)TCG>TGG	p.S160W	ATP6V1A_uc011bik.1_Missense_Mutation_p.S127W	NM_001690	NP_001681	P38606	VATA_HUMAN	ATPase, H+ transporting, lysosomal V1 subunit A	160					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|integral to plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			ovary(2)|skin(1)	3						AGTGAGAACTCGCTTATCAAA	0.368													54	94					0	0	0.014410	0	0
MUC4	4585	broad.mit.edu	37	3	195505838	195505838	+	Missense_Mutation	SNP	G	C	C	rs59101491		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:195505838G>C	uc011bto.1	-	3	12689	c.12229C>G	c.(12229-12231)CAC>GAC	p.H4077D	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GGGGTGGCGTGACCTGTGGAT	0.597													2	4					0	0	0.004672	0	0
RUFY3	22902	broad.mit.edu	37	4	71659564	71659564	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:71659564A>G	uc003hfr.2	+	13	1995	c.1400A>G	c.(1399-1401)GAC>GGC	p.D467G	RUFY3_uc011cay.1_Missense_Mutation_p.D403G	NM_001037442	NP_001032519	Q7L099	RUFY3_HUMAN	RUN and FYVE domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					negative regulation of axonogenesis	filopodium|growth cone					0		all_hematologic(202;0.248)	Lung(101;0.235)			TTCAAACAGGACTTTGGAGAC	0.527													30	49					0	0	0.008361	0	0
CDKL2	8999	broad.mit.edu	37	4	76532405	76532405	+	Silent	SNP	T	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:76532405T>C	uc003hiq.2	-	4	1029	c.504A>G	c.(502-504)AGA>AGG	p.R168R	CDKL2_uc011cbp.1_Silent_p.R168R|CDKL2_uc010iix.1_Intron	NM_003948	NP_003939	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2	168	Protein kinase.				sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(2)|stomach(2)|breast(2)|skin(1)	7			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GTTCTGGAGCTCTGTACCATC	0.453													40	72					0	0	0.007835	0	0
TIGD2	166815	broad.mit.edu	37	4	90035227	90035227	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:90035227G>T	uc003hsk.2	+	1	1260	c.1102G>T	c.(1102-1104)GAA>TAA	p.E368*	FAM13A_uc003hsh.1_5'Flank	NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	368	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		TGCAATTTATGAAGTGTCAAG	0.299													24	66					1.77063e-15	2.00672e-15	0.005443	1	0
PCDH18	54510	broad.mit.edu	37	4	138450855	138450855	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:138450855G>A	uc003ihe.3	-	1	2775	c.2388C>T	c.(2386-2388)CAC>CAT	p.H796H	PCDH18_uc003ihf.3_Silent_p.H789H|PCDH18_uc011cgz.1_Silent_p.H7H|PCDH18_uc003ihg.3_Silent_p.H576H|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	796	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGTGACTGTTGTGACTCTGCC	0.498													37	43					0	0	0.006999	0	0
ABCE1	6059	broad.mit.edu	37	4	146041306	146041306	+	Splice_Site	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr4:146041306G>A	uc003ijx.2	+	11	1584	c.1144_splice	c.e11+1	p.G382_splice	ABCE1_uc003ijy.2_Splice_Site_p.G382_splice|ABCE1_uc010iot.2_Splice_Site	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1						interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					GGGGAAAATGGTAAGTTTTCT	0.313													31	52					0	0	0.009535	0	0
DDR1	780	broad.mit.edu	37	6	30857025	30857025	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:30857025G>A	uc003nrr.2	+	5	494	c.235G>A	c.(235-237)GTG>ATG	p.V79M	DDR1_uc010jse.2_Missense_Mutation_p.V79M|DDR1_uc003nrq.2_Missense_Mutation_p.V79M|DDR1_uc003nrs.2_Missense_Mutation_p.V79M|DDR1_uc003nrt.2_Missense_Mutation_p.V79M|DDR1_uc011dms.1_Missense_Mutation_p.V97M|DDR1_uc011dmt.1_Missense_Mutation_p.V105M|DDR1_uc003nru.2_Missense_Mutation_p.V79M|DDR1_uc011dmu.1_Missense_Mutation_p.V79M|DDR1_uc003nrv.2_Missense_Mutation_p.V79M|DDR1_uc003nrw.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	79	Extracellular (Potential).|F5/8 type C.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	CGCAGGGTCGGTGTTTCCCAA	0.647													119	286					0	0	0.014410	0	0
PREP	5550	broad.mit.edu	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:105825364C>G	uc003prc.2	-	3	354	c.151G>C	c.(151-153)GTG>CTG	p.V51L		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	51					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	AGAAATGGCACAGTAATCTTA	0.353													54	106					0	0	0.014410	0	0
ROS1	6098	broad.mit.edu	37	6	117622147	117622147	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:117622147T>G	uc003pxp.1	-	42	6922	c.6723A>C	c.(6721-6723)GAA>GAC	p.E2241D	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2241	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTCAAAGCTTTCATTTATGA	0.333			T	GOPC|ROS1	glioblastoma|NSCLC								13	67					0	0	0.010818	0	0
RAET1L	154064	broad.mit.edu	37	6	150342042	150342042	+	Silent	SNP	T	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr6:150342042T>A	uc011eei.1	-	3	691	c.630A>T	c.(628-630)GGA>GGT	p.G210G		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	210	MHC class I alpha-2 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		TCCTGTTACCTCCTGCACTTG	0.468													58	119					0	0	0.014410	0	0
NSUN5P1	155400	broad.mit.edu	37	7	75045841	75045841	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:75045841A>G	uc003udh.1	+	4	608	c.565A>G	c.(565-567)AGA>GGA	p.R189G	NSUN5P1_uc003ude.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udf.1_Missense_Mutation_p.R143G|NSUN5P1_uc003udg.1_Missense_Mutation_p.R143G	NM_145645	NP_663620			NOL1/NOP2/Sun domain family, member 5B												0						GAGACAGCAAAGAGCCGCAGC	0.572													44	49					0	0	0.014410	0	0
ZAN	7455	broad.mit.edu	37	7	100383746	100383746	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:100383746G>T	uc003uwj.2	+	38	7127	c.6962G>T	c.(6961-6963)AGC>ATC	p.S2321I	ZAN_uc003uwk.2_Missense_Mutation_p.S2321I|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Missense_Mutation_p.S371I	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2321	VWFC 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			AACAGCAACAGCAATTGTGTC	0.632													126	129					2.37897e-42	2.77546e-42	0.014410	1	0
MUC17	140453	broad.mit.edu	37	7	100692247	100692247	+	Silent	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:100692247G>A	uc003uxp.1	+	5	12710	c.12657G>A	c.(12655-12657)ACG>ACA	p.T4219T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4219	Extracellular (Potential).|SEA.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGACATTCACGGAACAGGTAA	0.507													41	78					0	0	0.008740	0	0
ASB15	142685	broad.mit.edu	37	7	123264837	123264837	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:123264837C>A	uc003vku.1	+	8	958	c.666C>A	c.(664-666)CAC>CAA	p.H222Q	ASB15_uc003vkv.1_Missense_Mutation_p.H222Q|ASB15_uc003vkw.1_Missense_Mutation_p.H222Q	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	222	ANK 4.				intracellular signal transduction					skin(2)|lung(1)	3						AGTATGGTCACTGTGACGTGT	0.468											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	44					2.61193e-14	2.90486e-14	0.009535	1	0
MGAM	8972	broad.mit.edu	37	7	141800677	141800677	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:141800677T>G	uc003vwy.2	+	45	5316	c.5262T>G	c.(5260-5262)GAT>GAG	p.D1754E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1754	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTGGGATGATGGGCAAAGCA	0.502													22	19					0	0	0.012319	0	0
TRY6	154754	broad.mit.edu	37	7	142479940	142479940	+	Silent	SNP	C	T	T	rs58649169	by1000genomes	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr7:142479940C>T	uc011ksq.1	+	2	155	c.72C>T	c.(70-72)ATC>ATT	p.I24I	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ATGACAAGATCGTTGGGGGCT	0.557													4	94					0	0	0.014758	0	0
BMP1	649	broad.mit.edu	37	8	22022973	22022973	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:22022973C>A	uc003xbg.2	+	1	299	c.55C>A	c.(55-57)CCC>ACC	p.P19T	BMP1_uc011kzb.1_RNA|BMP1_uc003xba.2_Missense_Mutation_p.P19T|BMP1_uc003xbb.2_Missense_Mutation_p.P19T|BMP1_uc003xbe.2_RNA|BMP1_uc003xbc.2_5'UTR|BMP1_uc003xbd.2_RNA|BMP1_uc003xbf.2_5'UTR|BMP1_uc011kzc.1_5'UTR|BMP1_uc003xbh.2_RNA|BMP1_uc003xbi.2_RNA	NM_006129	NP_006120	P13497	BMP1_HUMAN	bone morphogenetic protein 1 isoform 3	19					cartilage condensation|cell differentiation|lipid metabolic process|lipoprotein metabolic process|ossification|positive regulation of cartilage development|proteolysis	extracellular space	calcium ion binding|cytokine activity|growth factor activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|breast(1)	3				Colorectal(74;0.00229)|COAD - Colon adenocarcinoma(73;0.0661)|READ - Rectum adenocarcinoma(644;0.11)		GCTCCCGCGTCCCGGCCGGCC	0.721													4	13					0.00198382	0.00210781	0.001984	1	0
SNTB1	6641	broad.mit.edu	37	8	121587444	121587444	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:121587444G>A	uc010mdg.2	-	4	1244	c.1018C>T	c.(1018-1020)CAG>TAG	p.Q340*	SNTB1_uc003ype.2_Nonsense_Mutation_p.Q340*	NM_021021	NP_066301	Q13884	SNTB1_HUMAN	basic beta 1 syntrophin	340	PH 2.				muscle contraction	cell junction|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|calmodulin binding			skin(5)	5	Lung NSC(37;4.46e-09)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)		STAD - Stomach adenocarcinoma(47;0.00503)			GGTTTCCACTGTTTCTTGCTC	0.483													54	134					0	0	0.014410	0	0
ZFP41	286128	broad.mit.edu	37	8	144332048	144332048	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr8:144332048C>T	uc003yxw.2	+	2	393	c.35C>T	c.(34-36)CCG>CTG	p.P12L	ZFP41_uc003yxv.2_RNA	NM_173832	NP_776193	Q8N8Y5	ZFP41_HUMAN	zinc finger protein 41 homolog	12					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.6e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)			AAGAAGACGCCGACCCCAAGG	0.592													12	28					0	0	0.010729	0	0
C9orf41	138199	broad.mit.edu	37	9	77598695	77598695	+	Silent	SNP	A	T	T			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr9:77598695A>T	uc004ajq.2	-	8	1371	c.1218T>A	c.(1216-1218)CGT>CGA	p.R406R	uc004ajp.2_Intron	NM_152420	NP_689633	Q8N4J0	CI041_HUMAN	hypothetical protein LOC138199	406										ovary(1)|skin(1)	2						ATTGTGGCTTACGGACCACAA	0.363													9	59					0	0	0.010504	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608132	84608132	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr9:84608132G>A	uc004amn.2	+	4	2794	c.2747G>A	c.(2746-2748)TGG>TAG	p.W916*		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	916						integral to membrane					0						AGGATGCTGTGGGGCCTTCCC	0.463													32	47					0	0	0.010818	0	0
MXRA5	25878	broad.mit.edu	37	X	3238719	3238719	+	Silent	SNP	A	G	G			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chrX:3238719A>G	uc004crg.3	-	5	5164	c.5007T>C	c.(5005-5007)AGT>AGC	p.S1669S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1669						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAATTGTTGTACTTGATAATC	0.438													197	64					0	0	0.014410	0	0
CTPS2	56474	broad.mit.edu	37	X	16685795	16685795	+	Silent	SNP	A	C	C			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chrX:16685795A>C	uc004cxk.2	-	12	1986	c.1242T>G	c.(1240-1242)CTT>CTG	p.L414L	CTPS2_uc004cxl.2_Silent_p.L414L|CTPS2_uc004cxm.2_Silent_p.L414L	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	414	Glutamine amidotransferase type-1.				glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					CTTTCAAGTTAAGGCAGTTTC	0.323													49	24					0	0	0.014410	0	0
C10orf12	26148	broad.mit.edu	37	10	98741324	98741326	+	In_Frame_Del	DEL	TTT	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:98741324_98741326delTTT	uc001kmv.2	+	1	284_286	c.177_179delTTT	c.(175-180)ACTTTA>ACA	p.L60del	C10orf12_uc009xvg.1_In_Frame_Del_p.L370del	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	60										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAGAGAATACTTTACAGTGTCCA	0.404													32	40	---	---	---	---					
ANAPC5	51433	broad.mit.edu	37	12	121746455	121746458	+	Frame_Shift_Del	DEL	TTCT	-	-	rs146935401		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:121746455_121746458delTTCT	uc001uag.2	-	17	2215_2218	c.2093_2096delAGAA	c.(2092-2097)AAGAACfs	p.K698fs	ANAPC5_uc010szu.1_Frame_Shift_Del_p.K364fs|ANAPC5_uc001uae.2_Frame_Shift_Del_p.K262fs|ANAPC5_uc010szv.1_Frame_Shift_Del_p.K300fs|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Frame_Shift_Del_p.K586fs	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	698_699	TPR 4.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGCAAAATAGTTCTTGGCTTCATT	0.490													187	242	---	---	---	---					
C15orf52	388115	broad.mit.edu	37	15	40633079	40633079	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:40633079delA	uc001zlh.3	-	1	90	c.74delT	c.(73-75)TTCfs	p.F25fs	C15orf52_uc001zli.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	25										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		GAGTGGGAGGAAAGCTGGAGC	0.642													12	19	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	62538522	62538523	+	RNA	INS	-	GA	GA	rs3055695		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:62538522_62538523insGA	uc002ain.1	-	5		c.694_695insTC			uc002ajj.1_3'UTR|uc002ajn.2_5'Flank|uc002ajo.2_5'Flank|uc002ajq.2_5'Flank|uc002ajr.1_5'Flank|uc010uhp.1_5'Flank|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		GGGGGCTCCGGGTAGGGGTTCA	0.609													4	6	---	---	---	---					
TERF2IP	54386	broad.mit.edu	37	16	75690386	75690388	+	In_Frame_Del	DEL	TCC	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr16:75690386_75690388delTCC	uc002fet.1	+	3	1174_1176	c.1077_1079delTCC	c.(1075-1080)TATCCC>TAC	p.P360del		NM_018975	NP_061848	Q9NYB0	TE2IP_HUMAN	telomeric repeat binding factor 2, interacting	360					negative regulation of DNA recombination at telomere|negative regulation of telomere maintenance|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of double-strand break repair via homologous recombination|telomere maintenance via telomerase|transcription, DNA-dependent	cytoplasm|nuclear telomere cap complex|nucleoplasm	DNA binding|protein binding			central_nervous_system(1)	1						CTGATGGATATCCCATTTGGTCC	0.453													9	195	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													8	16	---	---	---	---					
RAB27B	5874	broad.mit.edu	37	18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr18:52555227_52555230delCCAA	uc002lfr.2	+	5	456_459	c.345_348delCCAA	c.(343-348)AGCCAAfs	p.S115fs		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	115_116					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		CTTTTCAAGGCCAACTGCAAGCAA	0.392													19	65	---	---	---	---					
CD3EAP	10849	broad.mit.edu	37	19	45911859	45911861	+	In_Frame_Del	DEL	GAA	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr19:45911859_45911861delGAA	uc002pbq.1	+	3	1121_1123	c.633_635delGAA	c.(631-636)CGGAAG>CGG	p.K217del	PPP1R13L_uc002pbo.2_5'Flank|PPP1R13L_uc002pbp.2_5'Flank|CD3EAP_uc002pbr.1_In_Frame_Del_p.K219del	NM_012099	NP_036231	O15446	RPA34_HUMAN	CD3E antigen, epsilon polypeptide associated	217	Poly-Lys.				rRNA transcription|transmembrane receptor protein tyrosine kinase signaling pathway	chromosome|RNA polymerase I transcription factor complex	DNA-directed RNA polymerase activity			large_intestine(2)|ovary(2)	4		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0251)		TGGATGTGCGGAAGAAGAAGAAG	0.581													8	389	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233681733	233681734	+	Frame_Shift_Ins	INS	-	AGGAAAC	AGGAAAC			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:233681733_233681734insAGGAAAC	uc002vti.3	+	22	2698_2699	c.2361_2362insAGGAAAC	c.(2359-2364)CGAAGGfs	p.R787fs	GIGYF2_uc010zmj.1_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vtg.2_Frame_Shift_Ins_p.R781fs|GIGYF2_uc002vtj.3_Frame_Shift_Ins_p.R808fs|GIGYF2_uc002vtk.3_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vth.3_Frame_Shift_Ins_p.R781fs|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Frame_Shift_Ins_p.R618fs|GIGYF2_uc002vtq.3_Frame_Shift_Ins_p.R120fs	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	787_788	Gln-rich.|Glu-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AACTTGCCCGAAGGAAACAGGT	0.470													11	79	---	---	---	---					
OGG1	4968	broad.mit.edu	37	3	9798226	9798227	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:9798226_9798227insAA	uc003bsi.2	+	5	1162_1163	c.819_820insAA	c.(817-822)CACATTfs	p.H273fs	OGG1_uc003bsh.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsj.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsk.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsl.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsm.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|OGG1_uc003bsp.1_Frame_Shift_Ins_p.H38fs|OGG1_uc010hcm.1_Intron|OGG1_uc003bsq.1_Intron|OGG1_uc003bsr.1_Frame_Shift_Ins_p.H38fs	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	273_274					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					ATATGTGGCACATTGCCCAACG	0.599								BER_DNA_glycosylases					39	138	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	700532	700532	+	RNA	DEL	T	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr1:700532delT	uc001abo.2	-	7		c.1022delA								Homo sapiens cDNA clone IMAGE:4129277, partial cds.																		aaaaaaaaaaTTCCTTTGGGA	0.214													3	5	---	---	---	---					
C10orf12	26148	broad.mit.edu	37	10	98741324	98741326	+	In_Frame_Del	DEL	TTT	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr10:98741324_98741326delTTT	uc001kmv.2	+	1	284_286	c.177_179delTTT	c.(175-180)ACTTTA>ACA	p.L60del	C10orf12_uc009xvg.1_In_Frame_Del_p.L370del	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	60										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAGAGAATACTTTACAGTGTCCA	0.404													37	71	---	---	---	---					
ANAPC5	51433	broad.mit.edu	37	12	121746455	121746458	+	Frame_Shift_Del	DEL	TTCT	-	-	rs146935401		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr12:121746455_121746458delTTCT	uc001uag.2	-	17	2215_2218	c.2093_2096delAGAA	c.(2092-2097)AAGAACfs	p.K698fs	ANAPC5_uc010szu.1_Frame_Shift_Del_p.K364fs|ANAPC5_uc001uae.2_Frame_Shift_Del_p.K262fs|ANAPC5_uc010szv.1_Frame_Shift_Del_p.K300fs|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Frame_Shift_Del_p.K586fs	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	698_699	TPR 4.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGCAAAATAGTTCTTGGCTTCATT	0.490													132	168	---	---	---	---					
C15orf52	388115	broad.mit.edu	37	15	40633079	40633079	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr15:40633079delA	uc001zlh.3	-	1	90	c.74delT	c.(73-75)TTCfs	p.F25fs	C15orf52_uc001zli.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	25										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		GAGTGGGAGGAAAGCTGGAGC	0.642													9	20	---	---	---	---					
RAB27B	5874	broad.mit.edu	37	18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr18:52555227_52555230delCCAA	uc002lfr.2	+	5	456_459	c.345_348delCCAA	c.(343-348)AGCCAAfs	p.S115fs		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	115_116					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		CTTTTCAAGGCCAACTGCAAGCAA	0.392													39	163	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233681733	233681734	+	Frame_Shift_Ins	INS	-	AGGAAAC	AGGAAAC			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr2:233681733_233681734insAGGAAAC	uc002vti.3	+	22	2698_2699	c.2361_2362insAGGAAAC	c.(2359-2364)CGAAGGfs	p.R787fs	GIGYF2_uc010zmj.1_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vtg.2_Frame_Shift_Ins_p.R781fs|GIGYF2_uc002vtj.3_Frame_Shift_Ins_p.R808fs|GIGYF2_uc002vtk.3_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vth.3_Frame_Shift_Ins_p.R781fs|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Frame_Shift_Ins_p.R618fs|GIGYF2_uc002vtq.3_Frame_Shift_Ins_p.R120fs	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	787_788	Gln-rich.|Glu-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AACTTGCCCGAAGGAAACAGGT	0.470													46	301	---	---	---	---					
OGG1	4968	broad.mit.edu	37	3	9798226	9798227	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	g.chr3:9798226_9798227insAA	uc003bsi.2	+	5	1162_1163	c.819_820insAA	c.(817-822)CACATTfs	p.H273fs	OGG1_uc003bsh.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsj.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsk.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsl.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsm.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|OGG1_uc003bsp.1_Frame_Shift_Ins_p.H38fs|OGG1_uc010hcm.1_Intron|OGG1_uc003bsq.1_Intron|OGG1_uc003bsr.1_Frame_Shift_Ins_p.H38fs	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	273_274					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					ATATGTGGCACATTGCCCAACG	0.599								BER_DNA_glycosylases					28	54	---	---	---	---					
C10orf12	26148	broad.mit.edu	37	10	98741324	98741326	+	In_Frame_Del	DEL	TTT	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:98741324_98741326delTTT	uc001kmv.2	+	1	284_286	c.177_179delTTT	c.(175-180)ACTTTA>ACA	p.L60del	C10orf12_uc009xvg.1_In_Frame_Del_p.L370del	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	60										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAGAGAATACTTTACAGTGTCCA	0.404													32	40	---	---	---	---					
C15orf52	388115	broad.mit.edu	37	15	40633079	40633079	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:40633079delA	uc001zlh.3	-	1	90	c.74delT	c.(73-75)TTCfs	p.F25fs	C15orf52_uc001zli.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	25										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		GAGTGGGAGGAAAGCTGGAGC	0.642													12	19	---	---	---	---					
RAB27B	5874	broad.mit.edu	37	18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	-	-			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr18:52555227_52555230delCCAA	uc002lfr.2	+	5	456_459	c.345_348delCCAA	c.(343-348)AGCCAAfs	p.S115fs		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	115_116					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		CTTTTCAAGGCCAACTGCAAGCAA	0.392													19	65	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233681733	233681734	+	Frame_Shift_Ins	INS	-	AGGAAAC	AGGAAAC			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:233681733_233681734insAGGAAAC	uc002vti.3	+	22	2698_2699	c.2361_2362insAGGAAAC	c.(2359-2364)CGAAGGfs	p.R787fs	GIGYF2_uc010zmj.1_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vtg.2_Frame_Shift_Ins_p.R781fs|GIGYF2_uc002vtj.3_Frame_Shift_Ins_p.R808fs|GIGYF2_uc002vtk.3_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vth.3_Frame_Shift_Ins_p.R781fs|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Frame_Shift_Ins_p.R618fs|GIGYF2_uc002vtq.3_Frame_Shift_Ins_p.R120fs	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	787_788	Gln-rich.|Glu-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AACTTGCCCGAAGGAAACAGGT	0.470													11	79	---	---	---	---					
OGG1	4968	broad.mit.edu	37	3	9798226	9798227	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-B3-3925-01A-01D-1252-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	136486bc-1d87-4569-82c3-60f67ef7e15c	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:9798226_9798227insAA	uc003bsi.2	+	5	1162_1163	c.819_820insAA	c.(817-822)CACATTfs	p.H273fs	OGG1_uc003bsh.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsj.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsk.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsl.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsm.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|OGG1_uc003bsp.1_Frame_Shift_Ins_p.H38fs|OGG1_uc010hcm.1_Intron|OGG1_uc003bsq.1_Intron|OGG1_uc003bsr.1_Frame_Shift_Ins_p.H38fs	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	273_274					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					ATATGTGGCACATTGCCCAACG	0.599								BER_DNA_glycosylases					39	138	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	700532	700532	+	RNA	DEL	T	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr1:700532delT	uc001abo.2	-	7		c.1022delA								Homo sapiens cDNA clone IMAGE:4129277, partial cds.																		aaaaaaaaaaTTCCTTTGGGA	0.214													3	5	---	---	---	---					
C10orf12	26148	broad.mit.edu	37	10	98741324	98741326	+	In_Frame_Del	DEL	TTT	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr10:98741324_98741326delTTT	uc001kmv.2	+	1	284_286	c.177_179delTTT	c.(175-180)ACTTTA>ACA	p.L60del	C10orf12_uc009xvg.1_In_Frame_Del_p.L370del	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	60										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AAGAGAATACTTTACAGTGTCCA	0.404													37	71	---	---	---	---					
FAM111B	374393	broad.mit.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr11:58892377delA	uc001nnl.2	+	4	1050	c.807delA	c.(805-807)TCAfs	p.S269fs	FAM111B_uc001nnm.2_Frame_Shift_Del_p.S239fs|FAM111B_uc010rko.1_Frame_Shift_Del_p.S239fs	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	269							catalytic activity			ovary(2)	2						TGGACATTTCAAAAAAAAAAG	0.313													7	87	---	---	---	---					
C15orf52	388115	broad.mit.edu	37	15	40633079	40633079	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr15:40633079delA	uc001zlh.3	-	1	90	c.74delT	c.(73-75)TTCfs	p.F25fs	C15orf52_uc001zli.1_5'Flank	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	25										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		GAGTGGGAGGAAAGCTGGAGC	0.642													9	20	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													7	370	---	---	---	---					
RAB27B	5874	broad.mit.edu	37	18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr18:52555227_52555230delCCAA	uc002lfr.2	+	5	456_459	c.345_348delCCAA	c.(343-348)AGCCAAfs	p.S115fs		NM_004163	NP_004154	O00194	RB27B_HUMAN	RAB27B, member RAS oncogene family	115_116					protein transport|small GTPase mediated signal transduction	Golgi apparatus|plasma membrane	GTP binding|GTPase activity				0				Colorectal(16;0.0273)|READ - Rectum adenocarcinoma(59;0.219)		CTTTTCAAGGCCAACTGCAAGCAA	0.392													39	163	---	---	---	---					
ANKRD44	91526	broad.mit.edu	37	2	197943383	197943384	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:197943383_197943384delTG	uc002uub.2	-	16	1860_1861	c.1693_1694delCA	c.(1693-1695)CATfs	p.H565fs	ANKRD44_uc002utz.3_Intron|ANKRD44_uc002uua.1_Intron|ANKRD44_uc010zgw.1_Frame_Shift_Del_p.H493fs	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			ATTTGGGGTATGTGTGTGTGTG	0.342													7	30	---	---	---	---					
GIGYF2	26058	broad.mit.edu	37	2	233681733	233681734	+	Frame_Shift_Ins	INS	-	AGGAAAC	AGGAAAC			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr2:233681733_233681734insAGGAAAC	uc002vti.3	+	22	2698_2699	c.2361_2362insAGGAAAC	c.(2359-2364)CGAAGGfs	p.R787fs	GIGYF2_uc010zmj.1_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vtg.2_Frame_Shift_Ins_p.R781fs|GIGYF2_uc002vtj.3_Frame_Shift_Ins_p.R808fs|GIGYF2_uc002vtk.3_Frame_Shift_Ins_p.R787fs|GIGYF2_uc002vth.3_Frame_Shift_Ins_p.R781fs|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Frame_Shift_Ins_p.R618fs|GIGYF2_uc002vtq.3_Frame_Shift_Ins_p.R120fs	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	787_788	Gln-rich.|Glu-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AACTTGCCCGAAGGAAACAGGT	0.470													46	301	---	---	---	---					
OGG1	4968	broad.mit.edu	37	3	9798226	9798227	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	6376e148-2cc5-465e-8a01-106e70c0874b	g.chr3:9798226_9798227insAA	uc003bsi.2	+	5	1162_1163	c.819_820insAA	c.(817-822)CACATTfs	p.H273fs	OGG1_uc003bsh.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsj.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsk.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsl.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsm.2_Frame_Shift_Ins_p.H273fs|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|OGG1_uc003bsp.1_Frame_Shift_Ins_p.H38fs|OGG1_uc010hcm.1_Intron|OGG1_uc003bsq.1_Intron|OGG1_uc003bsr.1_Frame_Shift_Ins_p.H38fs	NM_002542	NP_002533	O15527	OGG1_HUMAN	8-oxoguanine DNA-glycosylase 1 isoform 1a	273_274					depurination|nucleotide-excision repair|regulation of protein import into nucleus, translocation|regulation of transcription, DNA-dependent|response to oxidative stress|response to radiation	mitochondrion|nuclear matrix|nuclear speck	damaged DNA binding|endonuclease activity|oxidized purine base lesion DNA N-glycosylase activity|protein binding				0	Medulloblastoma(99;0.227)					ATATGTGGCACATTGCCCAACG	0.599								BER_DNA_glycosylases					28	54	---	---	---	---					
