Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ATP5F1	515	broad.mit.edu	37	1	112002161	112002161	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr1:112002161A>G	uc001ebc.2	+	6	1017	c.596A>G	c.(595-597)TAT>TGT	p.Y199C	ATP5F1_uc009wgf.1_Missense_Mutation_p.Y346C|ATP5F1_uc001ebd.3_RNA	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	199					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		CGCCTGGACTATCATATATCT	0.418000													6	34					0	0	1	0	0
SLC16A1	6566	broad.mit.edu	37	1	113460277	113460277	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr1:113460277G>A	uc001ecx.2	-	4	1583	c.751C>T	c.(751-753)CAG>TAG	p.Q251*	SLC16A1_uc001ecy.2_Nonsense_Mutation_p.Q251*|SLC16A1_uc001ecz.2_Nonsense_Mutation_p.Q251*	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	251	Cytoplasmic (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	TCCAGGAACTGATTAATTGTT	0.388000													17	64					0	0	1	0	0
HIST2H2BA	337875	broad.mit.edu	37	1	120906086	120906086	+	RNA	SNP	C	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr1:120906086C>G	uc001eio.2	+	1		c.53C>G				NR_027337				Homo sapiens histone cluster 2, H2ba, mRNA (cDNA clone IMAGE:40032208).												0						AAGAAGGGCTCCAAAAAGGCT	0.522000													20	182					0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	148889643	148889643	+	RNA	SNP	T	C	C	rs4950649	by1000genomes	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr1:148889643T>C	uc009wkv.1	+	7		c.730T>C								Homo sapiens cDNA, FLJ17483.																		GTAGCAGACATTGGTTTTGAT	0.358000													3	28					0	0	1	0	0
SNAPIN	23557	broad.mit.edu	37	1	153631989	153631989	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr1:153631989C>G	uc001fcq.2	+	3	331	c.256C>G	c.(256-258)CTT>GTT	p.L86V		NM_012437	NP_036569	O95295	SNAPN_HUMAN	SNAP-associated protein	86	Potential.				intracellular protein transport|synaptic vesicle exocytosis	BLOC-1 complex|cell junction|perinuclear region of cytoplasm|synaptic vesicle membrane|synaptosome	SNARE binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TAAGAAGCTACTTAATGCCCG	0.443000													12	71					0	0	1	0	0
C10orf50	645528	broad.mit.edu	37	10	26880266	26880266	+	RNA	SNP	G	A	A	rs138111133	by1000genomes	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr10:26880266G>A	uc001ist.2	+	2		c.501G>A				NR_026793				Homo sapiens, clone IMAGE:5172288, mRNA.												0						ACCAAGCCCAGTGGACAGATG	0.443000													3	39					0	0	1	0	0
OR51B6	390058	broad.mit.edu	37	11	5373425	5373425	+	Missense_Mutation	SNP	G	A	A	rs149679624		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr11:5373425G>A	uc010qzb.1	+	1	688	c.688G>A	c.(688-690)GGA>AGA	p.G230R	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGTTCTGGAGGAGAAAGGGC	0.418000													6	103					0	0	1	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30888129	30888129	+	Silent	SNP	C	T	T	rs145888176		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr12:30888129C>T	uc001rji.1	-	4	1333	c.582G>A	c.(580-582)GCG>GCA	p.A194A	CAPRIN2_uc001rjf.1_5'UTR|CAPRIN2_uc001rjg.1_5'UTR|CAPRIN2_uc001rjh.1_Silent_p.A194A|CAPRIN2_uc001rjj.1_5'UTR|CAPRIN2_uc001rjk.3_Silent_p.A194A|CAPRIN2_uc001rjl.3_Silent_p.A194A	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	194	Potential.				negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					CCTTCTTTTGCGCTTTTAGTA	0.378000													4	78					0	0	1	0	0
RAN	5901	broad.mit.edu	37	12	131359114	131359114	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr12:131359114G>A	uc001uir.2	+	5	336	c.271G>A	c.(271-273)GAT>AAT	p.D91N	RAN_uc010tbk.1_Missense_Mutation_p.D3N|RAN_uc010tbl.1_Missense_Mutation_p.D3N|RAN_uc001uis.2_Missense_Mutation_p.D111N	NM_006325	NP_006316	P62826	RAN_HUMAN	ras-related nuclear protein	91					androgen receptor signaling pathway|cell division|DNA metabolic process|mitosis|mitotic spindle organization|positive regulation of transcription, DNA-dependent|protein export from nucleus|RNA export from nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|melanosome|nuclear pore|nucleoplasm	androgen receptor binding|chromatin binding|GTP binding|GTPase activity|transcription coactivator activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	Lung NSC(355;7.46e-07)|all_epithelial(31;7.36e-06)		OV - Ovarian serous cystadenocarcinoma(86;9.18e-49)|Epithelial(86;1.42e-45)|all cancers(50;6.28e-40)		CATAATGTTTGATGTAACATC	0.413000													8	38					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71476434	71476434	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr14:71476434A>G	uc001xmo.2	+	9	3159	c.2713A>G	c.(2713-2715)AAT>GAT	p.N905D	PCNX_uc001xmn.3_3'UTR|PCNX_uc010are.1_Missense_Mutation_p.N799D	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	905						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AAGAGCATCCAATATCTGGTA	0.333000													3	35					0	0	1	0	0
Unknown	0	broad.mit.edu	37	14	73079085	73079085	+	RNA	SNP	T	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr14:73079085T>C	uc010arh.1	-	1		c.719A>G								Homo sapiens cDNA FLJ14079 fis, clone HEMBB1002134, weakly similar to ZINC-FINGER PROTEIN NEURO-D4.																		TGCTCTGAGATAATCATTCTA	0.478000													11	44					0	0	1	0	0
POMT2	29954	broad.mit.edu	37	14	77765102	77765102	+	Silent	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr14:77765102G>A	uc001xti.2	-	8	1137	c.936C>T	c.(934-936)GAC>GAT	p.D312D	POMT2_uc001xth.1_Silent_p.D10D	NM_013382	NP_037514	Q9UKY4	POMT2_HUMAN	protein-O-mannosyltransferase 2	312					protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0292)		TGAAGAAACCGTCACCAGGGC	0.532000													6	25					0	0	1	0	0
TJP1	7082	broad.mit.edu	37	15	30008820	30008820	+	Silent	SNP	A	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr15:30008820A>G	uc001zcr.2	-	23	4672	c.4197T>C	c.(4195-4197)TCT>TCC	p.S1399S	TJP1_uc010azl.2_Silent_p.S1387S|TJP1_uc001zcq.2_Silent_p.S1323S|TJP1_uc001zcs.2_Silent_p.S1319S	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1399					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		CTTACTTTGAAGAATAACTAG	0.368000													6	45					0	0	1	0	0
TJP1	7082	broad.mit.edu	37	15	30065529	30065529	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr15:30065529G>T	uc001zcr.2	-	3	591	c.116C>A	c.(115-117)TCT>TAT	p.S39Y	TJP1_uc010azl.2_Missense_Mutation_p.S27Y|TJP1_uc001zcq.2_Missense_Mutation_p.S43Y|TJP1_uc001zcs.2_Missense_Mutation_p.S39Y	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	39	PDZ 1.				cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		TCGTCCACCAGATATTGCAAT	0.363000													18	76					1.02788e-11	1.04765e-11	1	1	0
PRTG	283659	broad.mit.edu	37	15	55931963	55931963	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr15:55931963G>A	uc002adg.2	-	13	2249	c.2201C>T	c.(2200-2202)ACC>ATC	p.T734I		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	734	Fibronectin type-III 4.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		GGAAGATGAGGTGTTAGCCTT	0.488000													5	134					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60484528	60484528	+	Silent	SNP	T	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr17:60484528T>C	uc002izu.1	+	8	900	c.822T>C	c.(820-822)CAT>CAC	p.H274H	EFCAB3_uc010wpc.1_Silent_p.H326H	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	274							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			AGCCTTTGCATTTCTTTGAGG	0.358000													7	61					0	0	1	0	0
C17orf80	55028	broad.mit.edu	37	17	71231747	71231747	+	Nonsense_Mutation	SNP	T	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr17:71231747T>G	uc002jjm.3	+	3	320	c.126T>G	c.(124-126)TAT>TAG	p.Y42*	C17orf80_uc010wqu.1_Nonsense_Mutation_p.Y42*|C17orf80_uc010dfj.2_Nonsense_Mutation_p.Y42*|C17orf80_uc002jjk.1_Nonsense_Mutation_p.Y42*|C17orf80_uc002jjl.3_Nonsense_Mutation_p.Y42*	NM_017941	NP_060411	Q9BSJ5	CQ080_HUMAN	lung cancer-related protein 8 isoform a	42	Extracellular (Potential).					integral to membrane				skin(1)	1			LUSC - Lung squamous cell carcinoma(166;0.197)			AAAAAGTTTATCAGTCCAAGC	0.378000													5	39					0	0	1	0	0
CASKIN2	57513	broad.mit.edu	37	17	73498794	73498794	+	Silent	SNP	A	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr17:73498794A>G	uc002joc.2	-	18	2911	c.2361T>C	c.(2359-2361)ACT>ACC	p.T787T	CASKIN2_uc010wsc.1_Silent_p.T705T	NM_020753	NP_065804	Q8WXE0	CSKI2_HUMAN	cask-interacting protein 2 isoform a	787	Pro-rich.					cytoplasm				pancreas(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGTCTGGGGGAGTGGCAGGGG	0.701000													4	19					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30350134	30350134	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr18:30350134A>C	uc002kxm.1	-	2	809	c.421T>G	c.(421-423)TAC>GAC	p.Y141D		NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	141	BTB.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						GTGTAGAGGTACTCGAGCACC	0.642000													46	187					0	0	1	0	0
ATP5A1	498	broad.mit.edu	37	18	43671697	43671697	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr18:43671697A>G	uc002lbr.1	-	3	350	c.260T>C	c.(259-261)CTG>CCG	p.L87P	ATP5A1_uc010dnl.1_Missense_Mutation_p.L37P|ATP5A1_uc002lbs.1_Missense_Mutation_p.L37P|ATP5A1_uc002lbt.1_Missense_Mutation_p.L87P|ATP5A1_uc010xct.1_Missense_Mutation_p.L37P|ATP5A1_uc010dnm.1_RNA	NM_004046	NP_004037	P25705	ATPA_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	87					ATP hydrolysis coupled proton transport|embryo development|lipid metabolic process|negative regulation of endothelial cell proliferation|respiratory electron transport chain	mitochondrial matrix|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism				0						AACATTCCTCAGCCCATGTAC	0.388000													23	64					0	0	1	0	0
ANKRD27	84079	broad.mit.edu	37	19	33132944	33132944	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr19:33132944G>A	uc002ntn.1	-	10	1046	c.890C>T	c.(889-891)TCT>TTT	p.S297F	ANKRD27_uc002nto.1_Missense_Mutation_p.S297F	NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	297	VPS9.				early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					CTGGCTTGGAGACTGTGTAAT	0.493000													46	126					0	0	1	0	0
LILRA5	353514	broad.mit.edu	37	19	54819027	54819027	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr19:54819027G>A	uc002qfe.2	-	6	839	c.719C>T	c.(718-720)GCT>GTT	p.A240V	LILRA5_uc002qff.2_Missense_Mutation_p.A228V|LILRA5_uc010yev.1_Missense_Mutation_p.A240V|LILRA5_uc010yew.1_Missense_Mutation_p.A228V	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	240	Extracellular (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GAGGTTATCAGCTGCTCCTGA	0.517000													11	46					0	0	1	0	0
NLRC4	58484	broad.mit.edu	37	2	32475306	32475307	+	Missense_Mutation	DNP	GC	CT	CT			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr2:32475306_32475307GC>CT	uc002roi.2	-	4	1872_1873	c.1626_1627GC>AG	c.(1624-1629)GAGCAA>GAAGAA	p.Q543E	NLRC4_uc002roj.1_Missense_Mutation_p.Q543E|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	543					activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					AGAATTTCTTGCTCAGTGGTGT	0.446000													20	70					0	0	1	0	0
SLC20A1	6574	broad.mit.edu	37	2	113418129	113418129	+	Silent	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr2:113418129G>A	uc002tib.2	+	9	2219	c.1773G>A	c.(1771-1773)CTG>CTA	p.L591L	SLC20A1_uc002tic.1_Silent_p.L403L	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	591	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						GGAAGGATCTGACACCGATCA	0.448000													15	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	131176696	131176696	+	RNA	SNP	C	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr2:131176696C>A	uc002trf.1	-	3		c.474G>T								Homo sapiens cDNA FLJ30428 fis, clone BRACE2008941.																		ATGGCAGGGGCCTGCTGGCTG	0.488000													5	15					8.12818e-05	8.12818e-05	1	1	0
ZNF142	7701	broad.mit.edu	37	2	219510938	219510938	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr2:219510938C>A	uc002vin.2	-	7	1843	c.1407G>T	c.(1405-1407)AAG>AAT	p.K469N	ZNF142_uc002vil.2_Missense_Mutation_p.K430N|ZNF142_uc010fvt.2_Missense_Mutation_p.K306N|ZNF142_uc002vim.2_Missense_Mutation_p.K306N	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	469	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GGAGGTAGTGCTTCCACTTGG	0.517000													28	101					7.26314e-15	7.54797e-15	1	1	0
PAX1	5075	broad.mit.edu	37	20	21687593	21687593	+	Silent	SNP	C	T	T	rs145538561	byFrequency	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr20:21687593C>T	uc002wsj.2	+	2	858	c.804C>T	c.(802-804)GGC>GGT	p.G268G	PAX1_uc010zsl.1_Silent_p.G268G|PAX1_uc010zsm.1_Silent_p.G244G	NM_006192	NP_006183	P15863	PAX1_HUMAN	paired box 1	268					regulation of transcription, DNA-dependent|skeletal system development|transcription from RNA polymerase II promoter	nucleus	DNA binding			upper_aerodigestive_tract(1)|kidney(1)	2						CCAAGATGGGCAGCCACCCCG	0.677000													4	85					0	0	1	0	0
RNF13	11342	broad.mit.edu	37	3	149678840	149678840	+	Silent	SNP	C	T	T			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr3:149678840C>T	uc003exn.3	+	11	1879	c.1095C>T	c.(1093-1095)GTC>GTT	p.V365V	RNF13_uc003exp.3_Silent_p.V365V|RNF13_uc010hvh.2_Silent_p.V246V	NM_007282	NP_009213	O43567	RNF13_HUMAN	ring finger protein 13	365	Cytoplasmic (Potential).				protein autoubiquitination	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane|nuclear inner membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		all_neural(597;0.0138)|Myeloproliferative disorder(1037;0.0255)	LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			ATGTCGTGGTCCAGTTGCAGC	0.358000													18	62					0	0	1	0	0
KLB	152831	broad.mit.edu	37	4	39408699	39408699	+	Missense_Mutation	SNP	C	T	T	rs138789592	byFrequency	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr4:39408699C>T	uc003gua.2	+	1	227	c.130C>T	c.(130-132)CTT>TTT	p.L44F	KLB_uc011byj.1_Missense_Mutation_p.L44F	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	44	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						CCTGTCAGCACTTATTCTGCT	0.408000													4	88					0	0	1	0	0
ZDHHC11	79844	broad.mit.edu	37	5	837562	837562	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr5:837562A>C	uc011cma.1	-	6	1202	c.818T>G	c.(817-819)ATT>AGT	p.I273S	ZDHHC11_uc003jbj.2_RNA|ZDHHC11_uc010itd.1_RNA	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	273						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			GCGGTTATTAATGAGATACTC	0.493000													9	56					0	0	1	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5235247	5235247	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr5:5235247C>G	uc003jdl.2	+	13	2109	c.1971C>G	c.(1969-1971)AGC>AGG	p.S657R	ADAMTS16_uc003jdk.1_Missense_Mutation_p.S657R|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	657	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AGCACAACAGCAGACGATTCA	0.512000													14	94					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82850838	82850838	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr5:82850838G>A	uc003kii.3	+	12	10072	c.9716G>A	c.(9715-9717)TGG>TAG	p.W3239*	VCAN_uc003kij.3_Nonsense_Mutation_p.W2252*|VCAN_uc010jau.2_Nonsense_Mutation_p.W1485*|VCAN_uc003kik.3_Nonsense_Mutation_p.W498*|VCAN_uc003kil.3_Nonsense_Mutation_p.W1903*	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3239	C-type lectin.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GACTTCCGTTGGACTGATGGC	0.413000													9	51					0	0	1	0	0
ALDH5A1	7915	broad.mit.edu	37	6	24528249	24528249	+	Missense_Mutation	SNP	G	A	A	rs147358733	byFrequency	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr6:24528249G>A	uc003neg.2	+	8	1226	c.1198G>A	c.(1198-1200)GTT>ATT	p.V400I	ALDH5A1_uc003nef.2_Missense_Mutation_p.V413I	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	400					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GAATGATGCCGTTTCTAAAGG	0.413000													13	50					0	0	1	0	0
HIST1H4B	8366	broad.mit.edu	37	6	26027471	26027471	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr6:26027471G>C	uc003nfr.2	-	1	10	c.10C>G	c.(10-12)CGC>GGC	p.R4G		NM_003544	NP_003535	P62805	H4_HUMAN	histone cluster 1, H4b	4					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						CCTTTGCCGCGACCAGACATG	0.512000													13	78					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73905126	73905126	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr6:73905126A>G	uc003pgk.2	+	14	3135	c.2788A>G	c.(2788-2790)AAA>GAA	p.K930E	KCNQ5_uc011dyh.1_Missense_Mutation_p.K949E|KCNQ5_uc011dyi.1_Missense_Mutation_p.K940E|KCNQ5_uc010kat.2_Missense_Mutation_p.K921E|KCNQ5_uc011dyj.1_Missense_Mutation_p.K820E|KCNQ5_uc011dyk.1_Missense_Mutation_p.K680E	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	930					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GCCTCATGTCAAACTGAAATA	0.408000													16	86					0	0	1	0	0
RARS2	57038	broad.mit.edu	37	6	88231239	88231239	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr6:88231239A>T	uc003pme.2	-	12	1038	c.978T>A	c.(976-978)GAT>GAA	p.D326E	RARS2_uc003pmb.2_Missense_Mutation_p.D151E|RARS2_uc003pmc.2_Missense_Mutation_p.D151E|RARS2_uc003pmd.2_5'UTR|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	326					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		CAGCTGCAAGATCTCTGAAAC	0.323000													5	22					0	0	1	0	0
PMS2L11	441263	broad.mit.edu	37	7	76631515	76631515	+	RNA	SNP	G	A	A	rs61737189	by1000genomes	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr7:76631515G>A	uc003ufw.3	+	4		c.656G>A			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGTCCGCAGCGTCTGGATACA	0.617000													13	50					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53589174	53589174	+	Silent	SNP	C	T	T			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chrX:53589174C>T	uc004dsp.2	-	54	7638	c.7236G>A	c.(7234-7236)GAG>GAA	p.E2412E	HUWE1_uc004dsn.2_Silent_p.E1236E	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	2412	Glu-rich.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TGTGCTCCTCCTCATCCTCAG	0.403000													14	35					0	0	1	0	0
S100PBP	64766	broad.mit.edu	37	1	33292114	33292114	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr1:33292114delA	uc001bvz.2	+	3	691	c.414delA	c.(412-414)GTAfs	p.V138fs	S100PBP_uc001bwa.1_Frame_Shift_Del_p.V138fs|S100PBP_uc001bwb.1_Frame_Shift_Del_p.V138fs|S100PBP_uc001bwc.2_Frame_Shift_Del_p.V138fs|S100PBP_uc001bwd.2_RNA	NM_022753	NP_073590	Q96BU1	S1PBP_HUMAN	S100P binding protein isoform a	138						nucleus	calcium-dependent protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)				GACGCTCTGTACTAGAAAAGA	0.413													16	56	---	---	---	---					
GIT2	9815	broad.mit.edu	37	12	110385121	110385127	+	Frame_Shift_Del	DEL	TGGGAGA	-	-			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr12:110385121_110385127delTGGGAGA	uc001tps.2	-	15	1740_1746	c.1575_1581delTCTCCCA	c.(1573-1581)TATCTCCCAfs	p.Y525fs	TCHP_uc001tpo.1_Intron|GIT2_uc001tpr.2_Frame_Shift_Del_p.Y95fs|GIT2_uc001tpq.2_Frame_Shift_Del_p.Y525fs|GIT2_uc001tpv.2_Frame_Shift_Del_p.Y477fs|GIT2_uc001tpu.2_Frame_Shift_Del_p.Y475fs|GIT2_uc001tpt.2_Intron|GIT2_uc010sxu.1_Frame_Shift_Del_p.Y463fs	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	525_527					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						CTTCTCCCATTGGGAGATATGGTTTCT	0.570													15	96	---	---	---	---					
SRCAP	10847	broad.mit.edu	37	16	30736370	30736371	+	Frame_Shift_Ins	INS	-	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr16:30736370_30736371insC	uc002dze.1	+	25	6010_6011	c.5625_5626insC	c.(5623-5628)CAGCCCfs	p.Q1875fs	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Frame_Shift_Ins_p.Q1670fs|SRCAP_uc010bzz.1_Frame_Shift_Ins_p.Q1445fs	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1875_1876	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CTCGACGCCAGCCCCCCCCACC	0.569													7	312	---	---	---	---					
ZNF341	84905	broad.mit.edu	37	20	32345059	32345060	+	Frame_Shift_Ins	INS	-	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr20:32345059_32345060insC	uc002wzy.2	+	6	867_868	c.847_848insC	c.(847-849)ACCfs	p.T283fs	ZNF341_uc002wzx.2_Frame_Shift_Ins_p.T283fs|ZNF341_uc010geq.2_Frame_Shift_Ins_p.T193fs|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	283					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CGCCCCCATGACCAGCGCCACC	0.629													128	286	---	---	---	---					
NUP50	10762	broad.mit.edu	37	22	45574449	45574449	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr22:45574449delT	uc003bfr.2	+	5	1133	c.671delT	c.(670-672)CTTfs	p.L224fs	NUP50_uc003bfs.2_Frame_Shift_Del_p.L196fs|NUP50_uc011aqn.1_5'UTR|NUP50_uc003bft.2_Frame_Shift_Del_p.L196fs|NUP50_uc011aqo.1_5'UTR	NM_007172	NP_009103	Q9UKX7	NUP50_HUMAN	nucleoporin 50kDa isoform b	224	5 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|intracellular transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore|nucleoplasm	protein binding				0		Ovarian(80;0.00965)|all_neural(38;0.0244)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TCTCCTTCCCTTTTTGGCTCA	0.408													10	57	---	---	---	---					
FLJ10213	55096	broad.mit.edu	37	3	73111503	73111504	+	In_Frame_Ins	INS	-	TGG	TGG	rs143235716	by1000genomes	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr3:73111503_73111504insTGG	uc003dpj.2	+	1	694_695	c.271_272insTGG	c.(271-273)TTG>TTGGTG	p.91_92insV	PPP4R2_uc003dph.1_Intron|PPP4R2_uc003dpi.1_Intron	NM_018029	NP_060499	Q6P2I7	EBLN2_HUMAN	hypothetical protein LOC55096	91_92							protein binding				0		Prostate(10;0.0187)|Lung SC(41;0.236)		Epithelial(33;3.9e-05)|BRCA - Breast invasive adenocarcinoma(55;7.72e-05)|LUSC - Lung squamous cell carcinoma(21;0.00156)|Lung(16;0.00487)|KIRC - Kidney renal clear cell carcinoma(39;0.012)|Kidney(39;0.0139)		ACTGGATGCATTGGAACCCCAA	0.490													4	9	---	---	---	---					
MINA	84864	broad.mit.edu	37	3	97673276	97673276	+	Frame_Shift_Del	DEL	C	-	-			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr3:97673276delC	uc003drz.1	-	5	1251	c.745delG	c.(745-747)GCCfs	p.A249fs	MINA_uc003dsa.1_Frame_Shift_Del_p.A249fs|MINA_uc003dsb.1_Frame_Shift_Del_p.A249fs|MINA_uc003dsc.1_Frame_Shift_Del_p.A249fs|MINA_uc010hpa.1_RNA|MINA_uc010hpb.1_RNA	NM_001042533	NP_001035998	Q8IUF8	MINA_HUMAN	MYC induced nuclear antigen isoform a	249	JmjC.				ribosome biogenesis	cytoplasm|nucleolus				ovary(1)	1						GTAGAGTGGGCCAGCCCCGCA	0.527													8	59	---	---	---	---					
IGFBP1	3484	broad.mit.edu	37	7	45932569	45932569	+	Frame_Shift_Del	DEL	C	-	-			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr7:45932569delC	uc003tnp.2	+	4	952	c.659delC	c.(658-660)TCCfs	p.S220fs	IGFBP1_uc003tno.3_Frame_Shift_Del_p.S218fs|IGFBP1_uc010kyn.2_Frame_Shift_Del_p.S177fs	NM_000596	NP_000587	P08833	IBP1_HUMAN	insulin-like growth factor binding protein 1	220	Thyroglobulin type-1.					extracellular space	insulin-like growth factor binding			lung(1)	1						TGTGAGACATCCATGGATGGA	0.547													11	109	---	---	---	---					
CYP51A1	1595	broad.mit.edu	37	7	91753101	91753107	+	Frame_Shift_Del	DEL	CTGTCTG	-	-			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr7:91753101_91753107delCTGTCTG	uc003ulm.3	-	6	993_999	c.831_837delCAGACAG	c.(829-837)CGCAGACAGfs	p.R277fs	CYP51A1_uc011khn.1_Frame_Shift_Del_p.R172fs|CYP51A1_uc003uln.3_Frame_Shift_Del_p.R214fs	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	271_273					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	TTTCTTGAGACTGTCTGCGTTTCTGGA	0.338													9	25	---	---	---	---					
TRIP6	7205	broad.mit.edu	37	7	100465513	100465514	+	Frame_Shift_Ins	INS	-	C	C			TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr7:100465513_100465514insC	uc003uww.2	+	2	310_311	c.140_141insC	c.(139-141)TGCfs	p.C47fs	TRIP6_uc010lhk.1_Intron	NM_003302	NP_003293	Q15654	TRIP6_HUMAN	thyroid receptor-interacting protein 6	47					focal adhesion assembly|positive regulation of cell migration|regulation of transcription, DNA-dependent|release of cytoplasmic sequestered NF-kappaB|transcription, DNA-dependent	cytoplasm|cytoskeleton|focal adhesion|nucleus	identical protein binding|interleukin-1 receptor binding|kinase binding|thyroid hormone receptor binding|zinc ion binding			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)					GTCAATTTTTGCCCCCTTCCAT	0.624													81	251	---	---	---	---					
CEP78	84131	broad.mit.edu	37	9	80866948	80866948	+	Frame_Shift_Del	DEL	A	-	-	rs138501486	by1000genomes	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	g.chr9:80866948delA	uc004akx.2	+	9	1470	c.1194delA	c.(1192-1194)GCAfs	p.A398fs	CEP78_uc004aky.3_Frame_Shift_Del_p.A399fs|CEP78_uc010mpp.2_Frame_Shift_Del_p.A399fs	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b	398					G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						CAGAACGTGCAAAAAGACACA	0.418													7	21	---	---	---	---					
