Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTOR	2475	broad.mit.edu	37	1	11273603	11273603	+	Silent	SNP	G	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:11273603G>C	uc001asd.2	-	21	3259	c.3138C>G	c.(3136-3138)ACC>ACG	p.T1046T		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1046					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TCTGAATTGAGGTGTTCATGA	0.458000													60	94					0	0	0.139131	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946437	16946437	+	RNA	SNP	C	T	T	rs2262202		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:16946437C>T	uc010ocf.1	-	3		c.461G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						AGCCTTCCGCCGGGCCAGCAG	0.672000													7	44					0	0	0.029380	0	0
UBR4	23352	broad.mit.edu	37	1	19490300	19490300	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:19490300C>G	uc001bbi.2	-	34	4726	c.4722G>C	c.(4720-4722)AAG>AAC	p.K1574N	UBR4_uc001bbm.1_Missense_Mutation_p.K785N	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1574					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CAACTACATTCTTCTGTGACA	0.403000													65	93					0	0	0.139131	0	0
EPHA8	2046	broad.mit.edu	37	1	22927186	22927186	+	Silent	SNP	A	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:22927186A>T	uc001bfx.1	+	14	2546	c.2421A>T	c.(2419-2421)CCA>CCT	p.P807P		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	807	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GGACGGCCCCAGAGGCCATCG	0.682000													61	84					0	0	0.139131	0	0
MCOLN3	55283	broad.mit.edu	37	1	85487988	85487988	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:85487988C>A	uc001dkp.2	-	10	1284	c.1191G>T	c.(1189-1191)AAG>AAT	p.K397N	MCOLN3_uc001dko.2_Missense_Mutation_p.K16N|MCOLN3_uc001dkq.2_Missense_Mutation_p.K341N	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	397						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		TTACGTTGTACTTTGCAAAGA	0.433000													18	33					3.52763e-06	3.78756e-06	0.160694	1	0
GBP1	2633	broad.mit.edu	37	1	89528891	89528891	+	Silent	SNP	G	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:89528891G>T	uc001dmx.2	-	2	247	c.27C>A	c.(25-27)GGC>GGA	p.G9G		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	9					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		GGCACATTGGGCCTGTCATGT	0.468000													8	161					0.000274275	0.000288413	0.047766	1	0
HIST2H2BF	440689	broad.mit.edu	37	1	149783718	149783718	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:149783718C>T	uc001esr.2	-	1	211	c.161G>A	c.(160-162)GGC>GAC	p.G54D	HIST2H2BF_uc010pbj.1_Missense_Mutation_p.G54D|HIST2H2BF_uc010pbk.1_Missense_Mutation_p.G54D	NM_001024599	NP_001019770	Q5QNW6	H2B2F_HUMAN	histone cluster 2, H2bf isoform a	54					nucleosome assembly	nucleosome|nucleus	DNA binding				0	Breast(34;0.0124)|all_hematologic(923;0.127)					GGACGAGATGCCGGTGTCGGG	0.597000													7	513					0	0	0.038147	0	0
PIGR	5284	broad.mit.edu	37	1	207105906	207105906	+	Nonsense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:207105906C>A	uc001hez.2	-	8	2087	c.1903G>T	c.(1903-1905)GGA>TGA	p.G635*	PIGR_uc009xbz.2_Nonsense_Mutation_p.G635*	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	635	Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTGGAGCTTCCACCTTGTTCC	0.617000													59	84					9.79885e-19	1.14883e-18	0.139131	1	0
CD46	4179	broad.mit.edu	37	1	207940508	207940508	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:207940508C>A	uc001hgc.2	+	6	980	c.824C>A	c.(823-825)ACT>AAT	p.T275N	CD46_uc001hgd.2_Missense_Mutation_p.T275N|CD46_uc001hge.2_Missense_Mutation_p.T275N|CD46_uc001hgf.2_Missense_Mutation_p.T275N|CD46_uc001hgg.2_Missense_Mutation_p.T275N|CD46_uc001hgh.2_Missense_Mutation_p.T275N|CD46_uc001hgi.2_Missense_Mutation_p.T275N|CD46_uc001hgj.2_Missense_Mutation_p.T275N|CD46_uc001hgk.2_Missense_Mutation_p.T275N|CD46_uc001hgl.2_Missense_Mutation_p.T275N|CD46_uc001hgm.2_Missense_Mutation_p.T275N|CD46_uc001hgn.2_Missense_Mutation_p.T275N|CD46_uc001hgo.2_Missense_Mutation_p.T275N|CD46_uc001hgp.2_Missense_Mutation_p.T275N	NM_002389	NP_002380	P15529	MCP_HUMAN	CD46 antigen, complement regulatory protein	275	Extracellular (Potential).|Sushi 4.				complement activation, classical pathway|innate immune response|interspecies interaction between organisms|single fertilization	inner acrosomal membrane|integral to plasma membrane	protein binding|receptor activity			large_intestine(2)|lung(1)|central_nervous_system(1)	4						AGTAACAGTACTTGGGATCCC	0.358000													16	33					5.03518e-11	5.70654e-11	0.043863	1	0
RBM34	23029	broad.mit.edu	37	1	235318245	235318245	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:235318245T>A	uc001hwn.2	-	4	578	c.548A>T	c.(547-549)AAT>ATT	p.N183I	RBM34_uc001hwo.2_RNA|ARID4B_uc001hwp.2_RNA|RBM34_uc010pxp.1_Missense_Mutation_p.N183I	NM_015014	NP_055829	P42696	RBM34_HUMAN	RNA binding motif protein 34 isoform 1	183						nucleolus	nucleotide binding|RNA binding			central_nervous_system(1)	1	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;5.43e-05)|Epithelial(3;0.000121)			AGTTCTCTCATTCTTTAATCT	0.328000													75	146					0	0	0.139131	0	0
ECD	11319	broad.mit.edu	37	10	74896486	74896486	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr10:74896486T>G	uc001jtn.2	-	13	1923	c.1680A>C	c.(1678-1680)AAA>AAC	p.K560N	ECD_uc009xqx.2_Missense_Mutation_p.K593N|ECD_uc009xqy.2_Missense_Mutation_p.K517N|ECD_uc001jto.2_Missense_Mutation_p.K259N	NM_007265	NP_009196	O95905	SGT1_HUMAN	suppressor of S. cerevisiae gcr2 isoform 1	560					regulation of glycolysis|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	transcription coactivator activity			pancreas(1)	1	Prostate(51;0.0119)					TGGTGAAACTTTTGCTGATGC	0.418000													62	91					0	0	0.139131	0	0
E2F8	79733	broad.mit.edu	37	11	19251275	19251275	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr11:19251275A>T	uc001mpm.2	-	10	2141	c.1619T>A	c.(1618-1620)CTG>CAG	p.L540Q	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Missense_Mutation_p.L540Q	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	540					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						CGTTGGGCTCAGGCCTTGGGG	0.582000													123	216					0	0	0.139131	0	0
QSER1	79832	broad.mit.edu	37	11	32954930	32954930	+	Nonsense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr11:32954930C>A	uc001mty.2	+	4	2006	c.1739C>A	c.(1738-1740)TCA>TAA	p.S580*	QSER1_uc001mtz.1_Nonsense_Mutation_p.S341*|QSER1_uc001mua.2_Nonsense_Mutation_p.S85*	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	580										ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TCTCTTGAGTCATCAACCCAA	0.398000													12	28					4.3838e-07	4.75689e-07	0.105934	1	0
MADD	8567	broad.mit.edu	37	11	47304129	47304129	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr11:47304129T>G	uc001ner.1	+	9	1858	c.1667T>G	c.(1666-1668)CTT>CGT	p.L556R	MADD_uc001neq.2_Missense_Mutation_p.L556R|MADD_uc001nev.1_Missense_Mutation_p.L556R|MADD_uc001nes.1_Missense_Mutation_p.L556R|MADD_uc001net.1_Missense_Mutation_p.L556R|MADD_uc009yln.1_Missense_Mutation_p.L556R|MADD_uc001neu.1_Missense_Mutation_p.L556R|MADD_uc001nex.2_Missense_Mutation_p.L556R|MADD_uc001nez.2_Missense_Mutation_p.L556R|MADD_uc001new.2_Missense_Mutation_p.L556R	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	556	dDENN.				activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		GAATGGATCCTTAACCCCACC	0.537000													42	74					0	0	0.124865	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18658292	18658292	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr12:18658292G>A	uc001rdt.2	+	23	3213	c.3097G>A	c.(3097-3099)GAC>AAC	p.D1033N	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.D1074N|PIK3C2G_uc010sic.1_Missense_Mutation_p.D852N	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1033	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GGGAGTATGTGACCGTCACAA	0.393000													6	4					0	0	0.029380	0	0
PDZRN4	29951	broad.mit.edu	37	12	41585335	41585335	+	Nonsense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr12:41585335C>T	uc010skn.1	+	2	195	c.127C>T	c.(127-129)CGA>TGA	p.R43*		NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	242	PDZ 1.						ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				TATAGGAGGTCGACCAAATCA	0.303000													30	62					0	0	0.134883	0	0
ACAD10	80724	broad.mit.edu	37	12	112184083	112184083	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr12:112184083C>A	uc001tsq.2	+	14	2451	c.2251C>A	c.(2251-2253)CCC>ACC	p.P751T	ACAD10_uc001tsp.2_Missense_Mutation_p.P751T|ACAD10_uc009zvx.2_Missense_Mutation_p.P782T|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	751							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						CCTGTATGCCCCCGAGGTACC	0.473000													75	212					3.76054e-38	4.67774e-38	0.139131	1	0
TMEM132D	121256	broad.mit.edu	37	12	130184819	130184819	+	Silent	SNP	C	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr12:130184819C>G	uc009zyl.1	-	2	832	c.504G>C	c.(502-504)CTG>CTC	p.L168L		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	168	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		CAAAGACCCTCAGGCACGGCA	0.662000													40	23					0	0	0.139131	0	0
SLC46A3	283537	broad.mit.edu	37	13	29287510	29287510	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr13:29287510A>G	uc001usi.2	-	2	1337	c.367T>C	c.(367-369)TAT>CAT	p.Y123H	SLC46A3_uc001usg.2_Missense_Mutation_p.Y48H|SLC46A3_uc001usj.2_Missense_Mutation_p.Y123H|SLC46A3_uc001ush.2_Missense_Mutation_p.Y123H|SLC46A3_uc001usk.2_Missense_Mutation_p.Y48H	NM_181785	NP_861450	Q7Z3Q1	S46A3_HUMAN	solute carrier family 46, member 3 isoform a	123	Helical; (Potential).				transmembrane transport	integral to membrane				central_nervous_system(1)|skin(1)	2		Lung SC(185;0.0367)		all cancers(112;0.159)		AAGGCAAAATAGCAAAGCAAA	0.408000													12	36					0	0	0.093190	0	0
ATP7B	540	broad.mit.edu	37	13	52548108	52548108	+	Silent	SNP	A	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr13:52548108A>T	uc001vfw.2	-	2	1405	c.1248T>A	c.(1246-1248)GCT>GCA	p.A416A	ATP7B_uc010adv.2_Silent_p.A416A|ATP7B_uc001vfx.2_Silent_p.A416A|ATP7B_uc001vfy.2_Silent_p.A305A|ATP7B_uc010tgt.1_Silent_p.A416A|ATP7B_uc010tgu.1_Silent_p.A416A|ATP7B_uc010tgv.1_Silent_p.A416A|ATP7B_uc010tgw.1_Silent_p.A384A	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	416	HMA 4.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TGTCTTCTATAGCAGCTCTGA	0.458000									Wilson_disease				73	128					0	0	0.139131	0	0
RNF219	79596	broad.mit.edu	37	13	79190506	79190506	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr13:79190506T>A	uc001vkw.1	-	6	1449	c.1390A>T	c.(1390-1392)ACA>TCA	p.T464S	uc001vku.1_RNA|RNF219_uc010afb.1_Missense_Mutation_p.T274S|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	464	Ser-rich.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		CAAAATCCTGTCTTTGGGGAA	0.333000													22	33					0	0	0.076483	0	0
SPINT1	6692	broad.mit.edu	37	15	41146021	41146021	+	Silent	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr15:41146021C>T	uc001zna.2	+	5	1059	c.855C>T	c.(853-855)GGC>GGT	p.G285G	SPINT1_uc001znb.2_Silent_p.G285G|SPINT1_uc001znc.2_Silent_p.G285G|SPINT1_uc010ucs.1_Silent_p.G285G	NM_181642	NP_857593	O43278	SPIT1_HUMAN	serine peptidase inhibitor, Kunitz type 1	285	BPTI/Kunitz inhibitor 1.					extracellular region|membrane fraction	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GCTGCTTGGGCAACAAGAACA	0.572000													90	153					0	0	0.139131	0	0
TP53BP1	7158	broad.mit.edu	37	15	43724401	43724401	+	Silent	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr15:43724401G>A	uc001zrs.2	-	17	3799	c.3651C>T	c.(3649-3651)CTC>CTT	p.L1217L	TP53BP1_uc010udp.1_Silent_p.L1217L|TP53BP1_uc001zrq.3_Silent_p.L1222L|TP53BP1_uc001zrr.3_Silent_p.L1222L|TP53BP1_uc010udq.1_Silent_p.L1222L	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1217					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		CCTGGCTATGGAGCGACTCTG	0.483000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					12	19					0	0	0.105934	0	0
CGNL1	84952	broad.mit.edu	37	15	57730838	57730838	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr15:57730838C>G	uc002aeg.2	+	2	717	c.641C>G	c.(640-642)ACA>AGA	p.T214R	CGNL1_uc010bfw.2_Missense_Mutation_p.T214R	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	214	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TCTGGTGTGACAGCTATTCGT	0.517000													148	252					0	0	0.139131	0	0
MCTP2	55784	broad.mit.edu	37	15	94841734	94841734	+	Silent	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr15:94841734C>T	uc002btj.2	+	1	305	c.240C>T	c.(238-240)AGC>AGT	p.S80S	MCTP2_uc010urg.1_Silent_p.S80S|MCTP2_uc002bti.2_Silent_p.S80S|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Silent_p.S80S|MCTP2_uc002btg.3_Silent_p.S80S|MCTP2_uc002bth.3_Silent_p.S80S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	80					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CGGTGCCCAGCAGTCTGTCCA	0.587000													68	154					0	0	0.139131	0	0
KIAA0556	23247	broad.mit.edu	37	16	27786370	27786370	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr16:27786370C>T	uc002dow.2	+	24	4438	c.4414C>T	c.(4414-4416)CGG>TGG	p.R1472W		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	1472										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CAGTGATGGCCGGCACATGTG	0.687000													4	119					0	0	0.150653	0	0
CDRT4	284040	broad.mit.edu	37	17	15341130	15341130	+	Missense_Mutation	SNP	C	T	T	rs139647100		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr17:15341130C>T	uc002gop.1	-	4	697	c.416G>A	c.(415-417)CGC>CAC	p.R139H	CDRT4_uc010vvw.1_3'UTR	NM_173622	NP_775893	Q8N9R6	CDRT4_HUMAN	CMT1A duplicated region transcript 4	139											0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0874)		CATAGGCTTGCGGGCAAAGAT	0.488000													4	124					0	0	0.021553	0	0
ATAD5	79915	broad.mit.edu	37	17	29220728	29220728	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr17:29220728T>G	uc002hfs.1	+	21	5203	c.4857T>G	c.(4855-4857)AAT>AAG	p.N1619K		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1619					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				AAGGAAACAATCCAGAGACAA	0.393000													24	91					0	0	0.091800	0	0
TANC2	26115	broad.mit.edu	37	17	61466867	61466867	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr17:61466867C>A	uc002jal.3	+	15	2814	c.2791C>A	c.(2791-2793)CTG>ATG	p.L931M	TANC2_uc010wpe.1_Missense_Mutation_p.L841M|TANC2_uc002jan.1_Missense_Mutation_p.L82M|TANC2_uc002jao.3_Missense_Mutation_p.L32M|TANC2_uc002jam.1_Missense_Mutation_p.L298M	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	931	ANK 3.						binding			ovary(2)	2						AGCAGGGTACCTGAGCATTGT	0.537000													24	25					1.55469e-16	1.80203e-16	0.083992	1	0
SLC16A6	9120	broad.mit.edu	37	17	66270212	66270212	+	Splice_Site	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr17:66270212C>A	uc002jgz.1	-	3	421	c.233_splice	c.e3-1	p.A78_splice	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Splice_Site_p.A78_splice	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6							integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	GCGAGGGGAGCTGCCGGGAAA	0.547000													35	46					1.59361e-14	1.82638e-14	0.092188	1	0
POTEC	388468	broad.mit.edu	37	18	14542654	14542654	+	Silent	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr18:14542654C>A	uc010dln.2	-	1	946	c.492G>T	c.(490-492)ACG>ACT	p.T164T	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	164	ANK 1.									skin(3)	3						TGTTCATGTCCGTGTCCCTGA	0.592000													6	313					1.06961e-07	1.17312e-07	0.038147	1	0
TAF4B	6875	broad.mit.edu	37	18	23895311	23895311	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr18:23895311G>C	uc002kvu.3	+	10	2440	c.1951G>C	c.(1951-1953)GAT>CAT	p.D651H	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.D656H	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	651					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			GTCATGTAAAGATGAACCATT	0.373000													3	95					0	0	0.115264	0	0
SALL3	27164	broad.mit.edu	37	18	76754972	76754972	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr18:76754972T>C	uc002lmt.2	+	2	2981	c.2981T>C	c.(2980-2982)ATC>ACC	p.I994T	SALL3_uc010dra.2_Intron	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	994	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GCGTTGGAAATCCACTACCGC	0.562000													30	45					0	0	0.125774	0	0
DOT1L	84444	broad.mit.edu	37	19	2191111	2191111	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:2191111C>G	uc002lvb.3	+	5	401	c.365C>G	c.(364-366)CCC>CGC	p.P122R		NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	122						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGACCGACCCCGAGAAGCTC	0.602000													29	60					0	0	0.173368	0	0
DOT1L	84444	broad.mit.edu	37	19	2216711	2216711	+	Silent	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:2216711G>A	uc002lvb.3	+	20	2391	c.2355G>A	c.(2353-2355)CTG>CTA	p.L785L	DOT1L_uc002lvc.1_Silent_p.L79L|uc002lvd.1_5'Flank|DOT1L_uc002lve.1_Silent_p.L79L	NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	785						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGGCACCTGAGCCAGGACC	0.692000													30	45					0	0	0.064281	0	0
ZNF136	7695	broad.mit.edu	37	19	12297631	12297631	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:12297631G>T	uc002mti.2	+	4	538	c.438G>T	c.(436-438)TGG>TGT	p.W146C	ZNF136_uc010xmh.1_Missense_Mutation_p.W80C	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	146	C2H2-type 1; degenerate.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						ACCAGTGTTGGAAACCCTTCA	0.408000													5	7					0.000602214	0.000626795	0.014758	1	0
SLC1A6	6511	broad.mit.edu	37	19	15067457	15067457	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:15067457C>T	uc002naa.1	-	6	1008	c.1000G>A	c.(1000-1002)GTC>ATC	p.V334I	SLC1A6_uc010dzu.1_Intron|SLC1A6_uc010xod.1_Missense_Mutation_p.V270I	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	334					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity	p.V334I(1)		pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CCCCCCAGGACGGCCATGTCT	0.582000													4	121					0	0	0.150653	0	0
CASP14	23581	broad.mit.edu	37	19	15164633	15164633	+	Silent	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:15164633C>T	uc010dzv.1	+	4	575	c.267C>T	c.(265-267)CAC>CAT	p.H89H	CASP14_uc002naf.2_Silent_p.H89H	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor	89		By similarity.			apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						TCATGGCTCACGGGAGGGAAG	0.552000													32	180					0	0	0.153744	0	0
NWD1	284434	broad.mit.edu	37	19	16918705	16918705	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:16918705G>A	uc002neu.3	+	18	4467	c.4045G>A	c.(4045-4047)GAG>AAG	p.E1349K	NWD1_uc002net.3_Missense_Mutation_p.E1214K|NWD1_uc002nev.3_Missense_Mutation_p.E1143K			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1349							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TCAGCTGCCCGAGACCCTCTC	0.567000													129	199					0	0	0.139131	0	0
ZNF285	26974	broad.mit.edu	37	19	44896570	44896570	+	Missense_Mutation	SNP	C	G	G	rs144077949	byFrequency	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:44896570C>G	uc002ozd.3	-	3	163	c.76G>C	c.(76-78)GAT>CAT	p.D26H	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.D33H	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	26	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TGGGCTTTATCCAATAGTGCC	0.453000													33	38					0	0	0.144211	0	0
DHDH	27294	broad.mit.edu	37	19	49438360	49438360	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:49438360C>T	uc002ple.1	+	2	234	c.194C>T	c.(193-195)CCG>CTG	p.P65L		NM_014475	NP_055290	Q9UQ10	DHDH_HUMAN	dimeric dihydrodiol dehydrogenase	65					carbohydrate metabolic process		binding|D-xylose 1-dehydrogenase (NADP+) activity|electron carrier activity|NAD(P)+ transhydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000158)|all cancers(93;0.000258)|Epithelial(262;0.0173)|GBM - Glioblastoma multiforme(486;0.0179)		GCCAAGGACCCGAGCGTGGGT	0.692000													3	4					0	0	0.150653	0	0
ZNF665	79788	broad.mit.edu	37	19	53669370	53669370	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr19:53669370C>G	uc010eqm.1	-	4	473	c.373G>C	c.(373-375)GCT>CCT	p.A125P		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	60					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCACGTTGAGCTCTTCTACCA	0.388000													60	118					0	0	0.139131	0	0
HADHA	3030	broad.mit.edu	37	2	26459821	26459821	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:26459821G>C	uc002rgy.2	-	4	346	c.216C>G	c.(214-216)TTC>TTG	p.F72L	HADHA_uc010yks.1_Intron|HADHA_uc010ykt.1_Intron	NM_000182	NP_000173	P40939	ECHA_HUMAN	mitochondrial trifunctional protein, alpha	72					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	TAACTTCTGAGAACTCTGAAT	0.403000													75	147					0	0	0.139131	0	0
GTF3C2	2976	broad.mit.edu	37	2	27565920	27565920	+	Silent	SNP	G	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:27565920G>T	uc002rjv.1	-	4	705	c.342C>A	c.(340-342)CCC>CCA	p.P114P	GTF3C2_uc002rju.1_Silent_p.P125P|GTF3C2_uc002rjw.1_Silent_p.P114P|GTF3C2_uc010eyz.1_Silent_p.P114P	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	114						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TAGGCTGTTGGGGCCTTTTGG	0.537000													64	143					7.59065e-32	9.32826e-32	0.139131	1	0
EML4	27436	broad.mit.edu	37	2	42488420	42488420	+	Silent	SNP	T	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:42488420T>C	uc002rsi.2	+	4	760	c.498T>C	c.(496-498)GCT>GCC	p.A166A	EML4_uc002rsh.3_Silent_p.A166A|EML4_uc010fap.2_Intron	NM_019063	NP_061936	Q9HC35	EMAL4_HUMAN	echinoderm microtubule associated protein like 4	166					microtubule-based process|mitosis	cytoplasm|microtubule	protein binding		EML4/ALK(246)	lung(246)|ovary(2)|central_nervous_system(1)|skin(1)	250						GCAAGAATGCTACTCCCACCA	0.423000			T	ALK	NSCLC								27	69					0	0	0.108266	0	0
HAAO	23498	broad.mit.edu	37	2	42994588	42994588	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:42994588G>C	uc002rst.3	-	10	925	c.850C>G	c.(850-852)CCC>GCC	p.P284A		NM_012205	NP_036337	P46952	3HAO_HUMAN	3-hydroxyanthranilate 3,4-dioxygenase	284	Domain B (By similarity).				neuron homeostasis|pyridine nucleotide biosynthetic process|quinolinate biosynthetic process|response to cadmium ion|response to zinc ion|tryptophan catabolic process	cytosol|soluble fraction	3-hydroxyanthranilate 3,4-dioxygenase activity|electron carrier activity|ferrous iron binding			ovary(1)	1						CACCCCAGGGGCTTCTTGCAG	0.617000													6	42					0	0	0.047766	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:95522772T>C	uc010fhp.2	-	1		c.49A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCGCTCCACCTCCGCGGCGTC	0.682000													4	123					0	0	0.150653	0	0
EDAR	10913	broad.mit.edu	37	2	109527287	109527287	+	Silent	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:109527287C>T	uc002teq.3	-	8	1106	c.675G>A	c.(673-675)CCG>CCA	p.P225P	EDAR_uc010fjn.2_Silent_p.P257P|EDAR_uc010yws.1_Silent_p.P257P	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	225	Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CGCTCTTCCCCGGGTGGCTGG	0.647000													35	72					0	0	0.131918	0	0
ORC2L	4999	broad.mit.edu	37	2	201790595	201790595	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:201790595C>A	uc002uwr.2	-	13	1368	c.1111G>T	c.(1111-1113)GAT>TAT	p.D371Y	ORC2L_uc010zhj.1_Missense_Mutation_p.D371Y	NM_006190	NP_006181	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	371					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0						TCTAGCTGATCCAGTATACTG	0.348000													66	104					2.23399e-28	2.71271e-28	0.139131	1	0
PRIC285	85441	broad.mit.edu	37	20	62193087	62193087	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr20:62193087T>C	uc002yfm.2	-	13	7595	c.6703A>G	c.(6703-6705)AGA>GGA	p.R2235G	PRIC285_uc002yfl.1_Missense_Mutation_p.R1666G	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2235					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			TCCATCCTTCTCAGGAGCAGT	0.667000													19	31					0	0	0.055883	0	0
LSS	4047	broad.mit.edu	37	21	47626684	47626684	+	Splice_Site	SNP	T	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr21:47626684T>G	uc002zij.2	-	16	1547	c.1468_splice	c.e16-1	p.L490_splice	LSS_uc011afv.1_Splice_Site_p.L479_splice|LSS_uc002zil.2_Splice_Site_p.L490_splice|LSS_uc002zik.2_Splice_Site_p.L410_splice	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1						cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					GTTCAGCAGCTGAAATCACAG	0.582000													53	80					0	0	0.139131	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													3	54					0	0	0.115264	0	0
ARSA	410	broad.mit.edu	37	22	51063617	51063617	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr22:51063617T>G	uc003bnb.3	-	9	1733	c.1480A>C	c.(1480-1482)ACC>CCC	p.T494P	ARSA_uc003bna.3_Missense_Mutation_p.T410P|ARSA_uc003bnc.3_Missense_Mutation_p.T494P|ARSA_uc003bnd.3_Missense_Mutation_p.T494P|ARSA_uc003bmz.3_Missense_Mutation_p.T494P	NM_001085426	NP_001078895	P15289	ARSA_HUMAN	arylsulfatase A isoform a precursor	494						lysosome	arylsulfatase activity|calcium ion binding|cerebroside-sulfatase activity			pancreas(1)|skin(1)	2		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)	Micafungin(DB01141)	GGGCGGGGGGTGCAGCCAGGA	0.692000													6	18					0	0	0.029380	0	0
TRNT1	51095	broad.mit.edu	37	3	3189651	3189651	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr3:3189651G>C	uc003bpp.3	+	8	1220	c.1118G>C	c.(1117-1119)TGT>TCT	p.C373S	TRNT1_uc010hbv.2_Missense_Mutation_p.C353S|TRNT1_uc003bpm.2_RNA	NM_182916	NP_886552	Q96Q11	TRNT1_HUMAN	tRNA nucleotidyl transferase, CCA-adding, 1	373					protein targeting to mitochondrion|tRNA 3'-end processing	mitochondrion	ATP binding|tRNA adenylyltransferase activity|tRNA binding				0				Epithelial(13;0.00226)|OV - Ovarian serous cystadenocarcinoma(96;0.00592)|all cancers(10;0.011)		GGAGAGCACTGTCTCCTAAAG	0.438000													6	11					0	0	0.038147	0	0
OSBPL10	114884	broad.mit.edu	37	3	31774841	31774841	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr3:31774841G>A	uc003cev.2	-	7	1384	c.1003C>T	c.(1003-1005)CTT>TTT	p.L335F	OSBPL10_uc003ceu.1_Missense_Mutation_p.L92F|OSBPL10_uc011axf.1_Missense_Mutation_p.L271F	NM_017784	NP_060254	Q9BXB5	OSB10_HUMAN	oxysterol-binding protein-like protein 10	335					lipid transport		lipid binding			skin(1)	1				STAD - Stomach adenocarcinoma(1;0.00406)		AAAGAGCCAAGTGTCCCATTT	0.473000													75	177					0	0	0.139131	0	0
ATR	545	broad.mit.edu	37	3	142274792	142274792	+	Silent	SNP	A	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr3:142274792A>T	uc003eux.3	-	10	2390	c.2268T>A	c.(2266-2268)TCT>TCA	p.S756S		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	756					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CTTTTAGTTGAGAAGATGAAC	0.368000								Other_conserved_DNA_damage_response_genes					40	79					0	0	0.086207	0	0
CRYGS	1427	broad.mit.edu	37	3	186256498	186256498	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr3:186256498C>T	uc003fqe.2	-	3	576	c.524G>A	c.(523-525)CGC>CAC	p.R175H	CRYGS_uc003fqf.2_Missense_Mutation_p.R175H	NM_017541	NP_060011	P22914	CRBS_HUMAN	crystallin, gamma S	175	Beta/gamma crystallin 'Greek key' 4.						structural constituent of eye lens				0	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.5e-22)	GBM - Glioblastoma multiforme(93;0.0906)		CTCCACAATGCGGCGGAAAGA	0.547000													4	162					0	0	0.150653	0	0
SLC26A1	10861	broad.mit.edu	37	4	985220	985220	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:985220G>A	uc003gcb.2	-	3	650	c.272C>T	c.(271-273)TCA>TTA	p.S91L	SLC26A1_uc003gbx.2_Missense_Mutation_p.S91L|IDUA_uc003gby.2_Intron|IDUA_uc003gbz.2_Intron|IDUA_uc003gca.2_Intron|SLC26A1_uc003gcc.2_Missense_Mutation_p.S91L	NM_213613	NP_998778	Q9H2B4	S26A1_HUMAN	solute carrier family 26, member 1 isoform a	91						integral to membrane|plasma membrane	secondary active sulfate transmembrane transporter activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			GGCCAGCAATGAGTAGGCGAT	0.632000													49	110					0	0	0.139131	0	0
ACOX3	8310	broad.mit.edu	37	4	8417674	8417674	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:8417674C>T	uc010idk.2	-	3	342	c.197G>A	c.(196-198)GGA>GAA	p.G66E	ACOX3_uc003glc.3_Missense_Mutation_p.G66E|ACOX3_uc003gld.3_Missense_Mutation_p.G66E|ACOX3_uc003gle.1_5'UTR	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	66					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						CAGATCGGCTCCAGGGGAACG	0.483000													61	103					0	0	0.139131	0	0
GPR125	166647	broad.mit.edu	37	4	22390249	22390249	+	Missense_Mutation	SNP	C	G	G	rs76872619		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:22390249C>G	uc003gqm.1	-	19	3310	c.3045G>C	c.(3043-3045)TTG>TTC	p.L1015F	GPR125_uc010ieo.1_Missense_Mutation_p.L871F|GPR125_uc003gql.1_Missense_Mutation_p.L142F	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	1015	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				AAGAAACAGCCAAAGCCCCAA	0.443000													55	81					0	0	0.139131	0	0
AASDH	132949	broad.mit.edu	37	4	57248668	57248668	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:57248668A>T	uc003hbn.2	-	3	479	c.326T>A	c.(325-327)ATC>AAC	p.I109N	AASDH_uc010ihb.2_5'UTR|AASDH_uc011caa.1_Intron|AASDH_uc003hbo.2_Missense_Mutation_p.I9N|AASDH_uc011cab.1_5'UTR|AASDH_uc010ihc.2_Missense_Mutation_p.I109N|AASDH_uc003hbp.2_Missense_Mutation_p.I109N|AASDH_uc003hbq.1_Missense_Mutation_p.I109N	NM_181806	NP_861522	Q4L235	ACSF4_HUMAN	aminoadipate-semialdehyde dehydrogenase	109					fatty acid metabolic process		acid-thiol ligase activity|acyl carrier activity|ATP binding|cofactor binding			ovary(4)	4	Glioma(25;0.08)|all_neural(26;0.101)	all_hematologic(202;0.0017)				TTCAACAAGGATATACTTTAG	0.323000													16	26					0	0	0.132662	0	0
ABCG2	9429	broad.mit.edu	37	4	89039327	89039327	+	Silent	SNP	A	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:89039327A>G	uc003hrg.2	-	7	1268	c.775T>C	c.(775-777)TTG>CTG	p.L259L	ABCG2_uc003hrh.2_Silent_p.L259L|ABCG2_uc003hrf.2_Silent_p.L129L	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	259	ABC transporter.|Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	CCTGAGGCCAATAAGGTGAGG	0.433000													28	50					0	0	0.134883	0	0
NDST4	64579	broad.mit.edu	37	4	115767018	115767018	+	Silent	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:115767018G>A	uc003ibu.2	-	10	2755	c.2076C>T	c.(2074-2076)ATC>ATT	p.I692I	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	692	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGTCAATGAGGATGGTGATGA	0.433000													37	59					0	0	0.124865	0	0
ASB5	140458	broad.mit.edu	37	4	177136796	177136796	+	Silent	SNP	T	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:177136796T>C	uc003iuq.1	-	7	961	c.945A>G	c.(943-945)CAA>CAG	p.Q315Q	ASB5_uc003iup.1_Silent_p.Q262Q	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	315	SOCS box.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		GCAGCTGGAGTTGTGGGATAA	0.368000													14	31					0	0	0.119110	0	0
FAM149A	25854	broad.mit.edu	37	4	187077186	187077186	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr4:187077186A>G	uc003iyt.3	+	7	995	c.416A>G	c.(415-417)CAG>CGG	p.Q139R	FAM149A_uc011cla.1_Missense_Mutation_p.Q139R|FAM149A_uc010isj.2_Missense_Mutation_p.Q139R|FAM149A_uc010isk.2_RNA|FAM149A_uc003iyu.3_Missense_Mutation_p.Q139R|FAM149A_uc010isl.2_Missense_Mutation_p.Q139R|FAM149A_uc011clb.1_Missense_Mutation_p.Q139R	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	430										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		AAACCAGCTCAGCCCGGTAGG	0.433000													37	61					0	0	0.074837	0	0
LIFR	3977	broad.mit.edu	37	5	38504185	38504185	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr5:38504185T>C	uc010ive.1	-	10	1662	c.1330A>G	c.(1330-1332)ATT>GTT	p.I444V	LIFR_uc003jli.2_Missense_Mutation_p.I444V	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	444	Extracellular (Potential).|Fibronectin type-III 3.				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					GTTGAATTAATATCCTTCACT	0.269000			T	PLAG1	salivary adenoma								16	34					0	0	0.146539	0	0
RICTOR	253260	broad.mit.edu	37	5	38953603	38953603	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr5:38953603C>G	uc003jlp.2	-	28	2774	c.2750G>C	c.(2749-2751)TGG>TCG	p.W917S	RICTOR_uc003jlo.2_Missense_Mutation_p.W917S|RICTOR_uc010ivf.2_Missense_Mutation_p.W632S	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	917					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					AATTTCTTCCCACTTATCCAA	0.279000													2	10					0	0	0.115264	0	0
SLC36A3	285641	broad.mit.edu	37	5	150660717	150660717	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr5:150660717G>T	uc003ltw.2	-	9	1421	c.1002C>A	c.(1000-1002)TAC>TAA	p.Y334*	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Nonsense_Mutation_p.Y319*|SLC36A3_uc003ltx.2_Nonsense_Mutation_p.Y375*	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	334	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCCGATAGAGTACATCAGCT	0.522000													61	91					4.67498e-28	5.60998e-28	0.139131	1	0
RGS14	10636	broad.mit.edu	37	5	176797996	176797996	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr5:176797996G>T	uc003mgf.2	+	11	1400	c.1218G>T	c.(1216-1218)AAG>AAT	p.K406N	RGS14_uc003mgh.2_Missense_Mutation_p.K254N|RGS14_uc003mgi.2_Missense_Mutation_p.K177N|RGS14_uc003mgj.2_5'Flank	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14	406	RBD 2.|Necessary for interaction with RABGEF1 (By similarity).				chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTCTGGAGAAGCACGGCTTGA	0.483000													12	22					1.5842e-08	1.7564e-08	0.105934	1	0
SQSTM1	8878	broad.mit.edu	37	5	179248068	179248068	+	Silent	SNP	C	T	T	rs11548639		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr5:179248068C>T	uc003mkw.3	+	1	227	c.132C>T	c.(130-132)TGC>TGT	p.C44C	SQSTM1_uc011dgr.1_Intron|SQSTM1_uc011dgs.1_Intron|SQSTM1_uc003mkv.3_Silent_p.C44C|SQSTM1_uc003mkx.2_5'Flank	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	44	OPR.|Interaction with PRKCZ and dimerization (By similarity).|Interaction with LCK.				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGGGACCCTGCGAGCGGCTGC	0.771000									Paget_Disease_of_Bone				3	3					0	0	0.021553	0	0
OR11A1	26531	broad.mit.edu	37	6	29395381	29395381	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr6:29395381T>G	uc003nmg.2	-	1	129	c.38A>C	c.(37-39)GAA>GCA	p.E13A		NM_013937	NP_039225	Q9GZK7	O11A1_HUMAN	olfactory receptor, family 11, subfamily A,	13	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GAGGACAAATTCAGTAATAGT	0.398000													31	58					0	0	0.153744	0	0
PNPLA1	285848	broad.mit.edu	37	6	36269817	36269817	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr6:36269817G>A	uc010jwf.2	+	6	955	c.955G>A	c.(955-957)GAT>AAT	p.D319N	PNPLA1_uc003olw.1_Missense_Mutation_p.D224N|PNPLA1_uc010jwe.1_Missense_Mutation_p.D233N	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	319					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						TCCCAAAGGGGATGGAAGGGG	0.572000											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	89					0	0	0.139131	0	0
SEPT7	989	broad.mit.edu	37	7	35912377	35912377	+	Splice_Site	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr7:35912377G>A	uc010kxc.2	+	4	570	c.377_splice	c.e4+1	p.C126_splice	SEPT7_uc011kat.1_Splice_Site_p.C125_splice|SEPT7_uc011kau.1_Splice_Site_p.C90_splice|SEPT7_uc011kav.1_Splice_Site_p.C73_splice|SEPT7_uc003tey.2_Splice_Site	NM_001788	NP_001779	Q16181	SEPT7_HUMAN	cell division cycle 10 isoform 1						cilium morphogenesis|cytokinesis|mitosis|protein heterooligomerization|regulation of embryonic cell shape	cilium axoneme|cleavage furrow|condensed chromosome kinetochore|midbody|nucleus|septin complex|spindle|stress fiber	GTP binding|protein binding|structural molecule activity				0						ATAGTAATTGGTAAGAAGGGT	0.378000													12	19					0	0	0.093190	0	0
PRKRIP1	79706	broad.mit.edu	37	7	102040095	102040096	+	Splice_Site	DNP	GG	AA	AA			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr7:102040095_102040096GG>AA	uc003uzh.2	+	3	361	c.306_splice	c.e3+1	p.K102_splice	PRKRIP1_uc003uzf.2_Splice_Site_p.K51_splice|PRKRIP1_uc003uzg.2_Splice_Site_p.K51_splice|PRKRIP1_uc011kkq.1_Splice_Site_p.K45_splice|PRKRIP1_uc011kkr.1_Splice_Site_p.K102_splice	NM_024653	NP_078929	Q9H875	PKRI1_HUMAN	PRKR interacting protein 1 (IL11 inducible)							nucleolus				ovary(1)	1						TGGCTGAGAAGGTCAGTGAGCC	0.475000													132	196					0	0	0.115264	0	0
ZNF777	27153	broad.mit.edu	37	7	149129443	149129443	+	Silent	SNP	C	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr7:149129443C>T	uc003wfv.2	-	6	2083	c.1920G>A	c.(1918-1920)GAG>GAA	p.E640E		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	640	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGCTGTCGCACTCGGGGCACT	0.652000													157	259					0	0	0.139131	0	0
CA9	768	broad.mit.edu	37	9	35674197	35674197	+	Nonsense_Mutation	SNP	G	T	T			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr9:35674197G>T	uc003zxo.3	+	1	283	c.241G>T	c.(241-243)GAG>TAG	p.E81*	C9orf100_uc003zxl.2_RNA|CA9_uc003zxp.3_Nonsense_Mutation_p.E81*	NM_001216	NP_001207	Q16790	CAH9_HUMAN	carbonic anhydrase IX precursor	81	Extracellular.|Proteoglycan-like (PG).				one-carbon metabolic process	integral to membrane|microvillus membrane|nucleolus	carbonate dehydratase activity|zinc ion binding			ovary(4)|skin(1)	5	all_epithelial(49;0.217)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ACCCGGAGAGGAGGATCTACC	0.557000													22	57					7.41877e-09	8.31555e-09	0.062417	1	0
AGTPBP1	23287	broad.mit.edu	37	9	88201776	88201776	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr9:88201776T>A	uc011ltd.1	-	21	3036	c.3003A>T	c.(3001-3003)CAA>CAT	p.Q1001H	AGTPBP1_uc004aod.3_Missense_Mutation_p.Q627H|AGTPBP1_uc011ltc.1_Intron|AGTPBP1_uc010mqc.2_Missense_Mutation_p.Q961H|AGTPBP1_uc011lte.1_Missense_Mutation_p.Q1013H	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	1001					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						CAGCCAAGTATTGCAACAGCC	0.388000													34	60					0	0	0.183431	0	0
GTF3C5	9328	broad.mit.edu	37	9	135929299	135929299	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr9:135929299G>A	uc004cci.3	+	6	1295	c.958G>A	c.(958-960)GAT>AAT	p.D320N	GTF3C5_uc010mzz.2_Missense_Mutation_p.D195N|GTF3C5_uc004ccj.3_Missense_Mutation_p.D320N	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	320						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		TCAAGTCCTCGATTTCCGAAT	0.443000													61	106					0	0	0.139131	0	0
ZMYM6	9204	broad.mit.edu	37	1	35457962	35457962	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr1:35457962delT	uc001byh.2	-	15	2247	c.2019delA	c.(2017-2019)AAAfs	p.K673fs	ZMYM6_uc001byf.1_Frame_Shift_Del_p.K673fs|ZMYM6_uc010oht.1_Frame_Shift_Del_p.K576fs|ZMYM6_uc009vup.2_Frame_Shift_Del_p.K479fs|ZMYM6_uc009vuq.1_Frame_Shift_Del_p.K673fs	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	673					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				AAGATGGAAATTTCATAGCAT	0.383													54	112	---	---	---	---					
A2ML1	144568	broad.mit.edu	37	12	9006738	9006738	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr12:9006738delA	uc001quz.3	+	21	2703	c.2605delA	c.(2605-2607)ACTfs	p.T869fs	A2ML1_uc001qva.1_Frame_Shift_Del_p.T449fs|A2ML1_uc010sgm.1_Frame_Shift_Del_p.T369fs	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	713						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CATTAACTTTACTATTAGTAC	0.443													72	63	---	---	---	---					
PTPRM	5797	broad.mit.edu	37	18	7567846	7567846	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr18:7567846delT	uc002knn.3	+	1	533	c.30delT	c.(28-30)ACTfs	p.T10fs	PTPRM_uc010dkv.2_Frame_Shift_Del_p.T10fs	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	10					homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GCCTGGCGACTTTGGCCGGAC	0.313													46	83	---	---	---	---					
GTF3C2	2976	broad.mit.edu	37	2	27565919	27565920	+	Frame_Shift_Ins	INS	-	TGGCCTTT	TGGCCTTT			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:27565919_27565920insTGGCCTTT	uc002rjv.1	-	4	705_706	c.342_343insAAAGGCCA	c.(340-345)CCCCAAfs	p.P114fs	GTF3C2_uc002rju.1_Frame_Shift_Ins_p.P125fs|GTF3C2_uc002rjw.1_Frame_Shift_Ins_p.P114fs|GTF3C2_uc010eyz.1_Frame_Shift_Ins_p.P114fs	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	114_115						transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTAGGCTGTTGGGGCCTTTTGG	0.535													28	199	---	---	---	---					
ANTXR1	84168	broad.mit.edu	37	2	69472576	69472579	+	Frame_Shift_Del	DEL	GCAC	-	-			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:69472576_69472579delGCAC	uc002sfg.2	+	18	2010_2013	c.1654_1657delGCAC	c.(1654-1659)GCACCTfs	p.A552fs		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	552_553	Cytoplasmic (Potential).|Pro-rich.				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						tcccaacagggcacctcctccctc	0.181									Familial_Infantile_Hemangioma				36	65	---	---	---	---					
XRCC5	7520	broad.mit.edu	37	2	216981563	216981564	+	Frame_Shift_Ins	INS	-	C	C			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr2:216981563_216981564insC	uc002vfy.2	+	3	457_458	c.317_318insC	c.(316-318)GACfs	p.D106fs	XRCC5_uc002vfz.2_5'Flank	NM_021141	NP_066964	P13010	XRCC5_HUMAN	ATP-dependent DNA helicase II	106					double-strand break repair via nonhomologous end joining|initiation of viral infection|negative regulation of transcription, DNA-dependent|provirus integration|telomere maintenance|transcription, DNA-dependent	Ku70:Ku80 complex|nonhomologous end joining complex|nuclear telomere cap complex|nucleoplasm	ATP binding|ATP-dependent DNA helicase activity|double-stranded DNA binding|protein C-terminus binding|telomeric DNA binding|transcription regulatory region DNA binding			lung(1)|kidney(1)	2		Renal(323;0.0328)		Epithelial(149;9.78e-06)|all cancers(144;0.000632)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.0117)		CAACAGGCTGACTGTATCCTTT	0.421								Direct_reversal_of_damage|NHEJ					24	50	---	---	---	---					
TOP3B	8940	broad.mit.edu	37	22	22319734	22319735	+	In_Frame_Ins	INS	-	TTG	TTG			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr22:22319734_22319735insTTG	uc002zvs.2	-	9	1300_1301	c.865_866insCAA	c.(865-867)AGC>ACAAGC	p.288_289insT	TOP3B_uc010gtm.1_5'UTR|TOP3B_uc002zvr.2_In_Frame_Ins_p.13_14insT|TOP3B_uc010gtl.2_In_Frame_Ins_p.288_289insT|TOP3B_uc002zvt.3_In_Frame_Ins_p.288_289insT	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	288_289					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		TTCTTTCCTGCTTGTGGCCTCC	0.535													14	41	---	---	---	---					
CYP2D6	1565	broad.mit.edu	37	22	42523507	42523516	+	Frame_Shift_Del	DEL	AGGGGGACGA	-	-	rs61745683	byFrequency	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr22:42523507_42523516delAGGGGGACGA	uc003bce.2	-	7	1196_1205	c.1106_1115delTCGTCCCCCT	c.(1105-1116)ATCGTCCCCCTGfs	p.I369fs	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_Frame_Shift_Del_p.I63fs|CYP2D6_uc003bcf.2_Frame_Shift_Del_p.I318fs	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	369_372							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						GGTCACACCCAGGGGGACGATGTCCCCAAA	0.624													14	125	---	---	---	---					
PCDHGA4	56111	broad.mit.edu	37	5	140735217	140735218	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr5:140735217_140735218insG	uc003ljq.1	+	1	450_451	c.450_451insG	c.(448-453)GCAAGAfs	p.A150fs	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Frame_Shift_Ins_p.A150fs	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	150_151	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCCTGGGGCAAGATTTCCTCT	0.450													22	57	---	---	---	---					
HECA	51696	broad.mit.edu	37	6	139495590	139495590	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr6:139495590delA	uc003qin.2	+	3	1666	c.1381delA	c.(1381-1383)AAGfs	p.K461fs		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	461					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		CATCTGCATCAAGTGTAAGTC	0.547													59	122	---	---	---	---					
TRY6	154754	broad.mit.edu	37	7	142468304	142468305	+	Splice_Site	INS	-	TA	TA			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr7:142468304_142468305insTA	uc011kso.1	+	1		c.46_splice	c.e1+1		uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|uc003wan.1_Intron|uc011ksp.1_5'Flank					Homo sapiens protease, serine, 2 (trypsin 2), mRNA (cDNA clone IMAGE:3928526), partial cds.												0						GGAGCTGCTGGCGAGTTTCATG	0.540													8	191	---	---	---	---					
COL5A1	1289	broad.mit.edu	37	9	137593045	137593045	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	g.chr9:137593045delA	uc004cfe.2	+	4	902	c.520delA	c.(520-522)AAGfs	p.K174fs		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	174	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CAGCGTCCACAAGAAAAATGT	0.478													28	50	---	---	---	---					
