Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16976601	16976601	+	RNA	SNP	C	A	A	rs9728352	by1000genomes	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:16976601C>A	uc010och.1	+	14		c.2322C>A			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTGCTTTACCCACAACTGCT	0.562000													4	41					1.08611e-07	1.23766e-07	0.000978	1	0
ECE1	1889	broad.mit.edu	37	1	21585300	21585300	+	Silent	SNP	G	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:21585300G>T	uc001bek.2	-	6	723	c.648C>A	c.(646-648)GCC>GCA	p.A216A	ECE1_uc001bem.2_Silent_p.A200A|ECE1_uc001bej.2_Silent_p.A204A|ECE1_uc001bei.2_Silent_p.A213A|ECE1_uc010odl.1_Silent_p.A216A|ECE1_uc009vqa.1_Silent_p.A216A	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	216	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		AGTTGTCCTTGGCCCAGGGAC	0.498000													28	58					4.2108e-06	4.7432e-06	0.001786	1	0
MAP3K6	9064	broad.mit.edu	37	1	27682529	27682529	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:27682529G>A	uc001bny.1	-	27	3948	c.3699C>T	c.(3697-3699)GGC>GGT	p.G1233G	MAP3K6_uc009vsw.1_Silent_p.G1225G	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	1233					activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		TTTGGATGGTGCCTGAATCCA	0.438000													43	40					0	0	0.002522	0	0
SNIP1	79753	broad.mit.edu	37	1	38019754	38019754	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:38019754C>G	uc001cbi.2	-	1	150	c.77G>C	c.(76-78)GGG>GCG	p.G26A	SNIP1_uc010oid.1_RNA|DNALI1_uc001cbj.2_5'Flank|DNALI1_uc010oie.1_5'Flank	NM_024700	NP_078976	Q8TAD8	SNIP1_HUMAN	Smad nuclear interacting protein	26					production of miRNAs involved in gene silencing by miRNA	nucleus	protein binding			upper_aerodigestive_tract(1)|lung(1)	2		Myeloproliferative disorder(586;0.0393)				CACCACCACCCCCGCCGGCAG	0.687000													27	36					0	0	0.003271	0	0
KCNC4	3749	broad.mit.edu	37	1	110768796	110768796	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:110768796G>A	uc001dzh.2	+	3	1872	c.1815G>A	c.(1813-1815)CGG>CGA	p.R605R	KCNC4_uc009wfr.2_Silent_p.R605R|KCNC4_uc001dzg.2_Silent_p.R605R|KCNC4_uc001dzi.2_RNA	NM_004978	NP_004969	Q03721	KCNC4_HUMAN	Shaw-related voltage-gated potassium channel	605	Cytoplasmic (Potential).				synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3		all_cancers(81;9.88e-06)|all_epithelial(167;3.23e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0238)|all cancers(265;0.0693)|Epithelial(280;0.0748)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.135)		GTAGTGTCCGGAAAGGTATGG	0.642000													29	44					0	0	0.002836	0	0
FLG2	388698	broad.mit.edu	37	1	152323924	152323924	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:152323924A>C	uc001ezw.3	-	3	6411	c.6338T>G	c.(6337-6339)GTG>GGG	p.V2113G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2113							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCTGAGTGCACTTCACTGTC	0.532000													7	791					0	0	0.004482	0	0
NIT1	4817	broad.mit.edu	37	1	161090544	161090544	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:161090544C>A	uc001fxv.1	+	7	1049	c.973C>A	c.(973-975)CCA>ACA	p.P325T	PFDN2_uc001fxu.2_5'Flank|NIT1_uc001fxw.2_Intron|NIT1_uc001fxx.1_Missense_Mutation_p.P289T|NIT1_uc001fxy.1_Missense_Mutation_p.P289T|NIT1_uc010pka.1_Missense_Mutation_p.P310T	NM_005600	NP_005591	Q86X76	NIT1_HUMAN	nitrilase 1	325					nitrogen compound metabolic process	mitochondrion	nitrilase activity				0	all_cancers(52;3.39e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			TCTGGGTCACCCACTGTCTTA	0.567000													28	37					1.16021e-09	1.33765e-09	0.007291	1	0
PIK3C2B	5287	broad.mit.edu	37	1	204438176	204438176	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr1:204438176G>A	uc001haw.2	-	3	1234	c.755C>T	c.(754-756)GCC>GTC	p.A252V	PIK3C2B_uc010pqv.1_Missense_Mutation_p.A252V|PIK3C2B_uc001hax.1_Missense_Mutation_p.A252V|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	252	Interaction with GRB2.				cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GCCCCTGGTGGCATCCCGCAA	0.577000													5	452					0	0	0.001168	0	0
MYST4	23522	broad.mit.edu	37	10	76602897	76602897	+	Silent	SNP	G	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr10:76602897G>T	uc001jwn.1	+	3	775	c.282G>T	c.(280-282)GGG>GGT	p.G94G	MYST4_uc001jwm.1_Silent_p.G94G|MYST4_uc001jwo.1_Silent_p.G94G|MYST4_uc001jwp.1_Silent_p.G94G	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	94					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CAGCCAAGGGGTCTAGAGGAT	0.473000			T	CREBBP	AML								131	278					1.03447e-49	1.25158e-49	0.003610	1	0
LRP4	4038	broad.mit.edu	37	11	46897384	46897384	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:46897384G>A	uc001ndn.3	-	26	3816	c.3670C>T	c.(3670-3672)CAA>TAA	p.Q1224*		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1224	Extracellular (Potential).|LDL-receptor class B 14.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CATAGCAGTTGGGAGCTGGCC	0.602000													37	52					0	0	0.004289	0	0
OR5I1	10798	broad.mit.edu	37	11	55703836	55703836	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:55703836A>T	uc010ris.1	-	1	41	c.41T>A	c.(40-42)TTT>TAT	p.F14Y		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TAATAGAATAAACTCAGTGAC	0.358000													33	43					0	0	0.002096	0	0
RBM4	5936	broad.mit.edu	37	11	66411450	66411450	+	Silent	SNP	T	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:66411450T>A	uc009yrj.2	+	3	1430	c.942T>A	c.(940-942)GCT>GCA	p.A314A	RBM4_uc009yrk.2_Silent_p.A289A|RBM4_uc001oiw.1_Silent_p.A314A|RBM4_uc001oix.1_Intron|RBM4_uc010rpj.1_Intron|RBM4_uc001oiy.1_Silent_p.A314A|RBM4_uc001oiz.1_Silent_p.A314A	NM_002896	NP_002887	Q9BWF3	RBM4_HUMAN	RNA binding motif protein 4	314	Interaction with TNPO3.				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|negative regulation of translation in response to stress|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|positive regulation of muscle cell differentiation|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of nucleocytoplasmic transport|RNA splicing|stress-activated MAPK cascade	nuclear speck|nucleolus|stress granule	miRNA binding|mRNA 3'-UTR binding|nucleotide binding|protein binding|zinc ion binding			ovary(1)	1				Lung(977;0.0112)|LUSC - Lung squamous cell carcinoma(976;0.0266)		TGCGTCGCGCTACAGCCCCAG	0.443000													51	79					0	0	0.003610	0	0
FGF3	2248	broad.mit.edu	37	11	69625370	69625370	+	Silent	SNP	A	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:69625370A>C	uc001oph.2	-	3	914	c.423T>G	c.(421-423)CCT>CCG	p.P141P		NM_005247	NP_005238	P11487	FGF3_HUMAN	fibroblast growth factor 3 precursor	141					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of cardiac muscle tissue development|positive regulation of cell division|positive regulation of cell proliferation	extracellular region	growth factor activity			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(11;5.05e-15)|STAD - Stomach adenocarcinoma(18;0.0278)			GGCGGGCCCCAGGCGTACTAG	0.652000													4	38					0	0	0.004482	0	0
PCF11	51585	broad.mit.edu	37	11	82877725	82877725	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:82877725A>G	uc001ozx.3	+	5	2131	c.1786A>G	c.(1786-1788)AGA>GGA	p.R596G	PCF11_uc010rsu.1_Missense_Mutation_p.R596G	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	596					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						GTCTGCCAAAAGATGGAAATC	0.348000													54	73					0	0	0.003610	0	0
C11orf65	160140	broad.mit.edu	37	11	108276173	108276173	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:108276173T>C	uc001pkh.2	-	6	613	c.543A>G	c.(541-543)ATA>ATG	p.I181M	C11orf65_uc010rvx.1_Missense_Mutation_p.I132M|C11orf65_uc009yxu.1_RNA	NM_152587	NP_689800	Q8NCR3	CK065_HUMAN	hypothetical protein LOC160140	181										ovary(1)	1		all_cancers(61;1.38e-11)|all_epithelial(67;3.16e-07)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;8.21e-06)|BRCA - Breast invasive adenocarcinoma(274;1.01e-05)|all cancers(92;0.000189)|Colorectal(284;0.114)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		TCATCCACTCTATTTTTCTAA	0.338000													41	53					0	0	0.002522	0	0
ST3GAL4	6484	broad.mit.edu	37	11	126278238	126278238	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:126278238C>A	uc001qds.2	+	8	693	c.474C>A	c.(472-474)GAC>GAA	p.D158E	ST3GAL4_uc001qdt.2_Missense_Mutation_p.D154E|ST3GAL4_uc009zcc.2_5'UTR|ST3GAL4_uc009zcd.2_Missense_Mutation_p.D147E|ST3GAL4_uc001qdu.2_Missense_Mutation_p.D154E|ST3GAL4_uc001qdv.2_Missense_Mutation_p.D158E|ST3GAL4_uc009zce.2_Missense_Mutation_p.D154E|ST3GAL4_uc001qdw.2_Missense_Mutation_p.D147E|ST3GAL4_uc001qdx.1_Missense_Mutation_p.D115E|ST3GAL4_uc001qdy.2_5'UTR|ST3GAL4_uc001qdz.2_5'UTR	NM_006278	NP_006269	Q11206	SIA4C_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	158	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.138)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0767)		ATGAGGGTGACGTGGGCTCCA	0.567000													22	42					3.62473e-10	4.22885e-10	0.001882	1	0
PRH1	5554	broad.mit.edu	37	12	11035282	11035282	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr12:11035282T>A	uc001qzc.2	-	7	704	c.116A>T	c.(115-117)GAG>GTG	p.E39V	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_RNA|PRB4_uc001qzf.1_Intron	NM_006250	NP_006241	P02810	PRPC_HUMAN	proline-rich protein HaeIII subfamily 1	39	Inhibits hydroxyapatite formation, binds to hydroxyapatite and calcium.					extracellular space	protein binding				0				BRCA - Breast invasive adenocarcinoma(232;0.245)		TAGGAACTGCTCAGAGTCTCC	0.547000													72	183					0	0	0.003610	0	0
LRP6	4040	broad.mit.edu	37	12	12317326	12317326	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr12:12317326T>G	uc001rah.3	-	9	2075	c.1933A>C	c.(1933-1935)ATT>CTT	p.I645L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.I645L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	645	Extracellular (Potential).|Beta-propeller 3.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TCCAGAGAAATTCGTCTGATA	0.418000													77	146					0	0	0.003610	0	0
SILV	6490	broad.mit.edu	37	12	56349929	56349929	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr12:56349929G>A	uc001sip.2	-	7	1460	c.1429C>T	c.(1429-1431)CTG>TTG	p.L477L	SILV_uc001siq.2_Silent_p.L477L|SILV_uc010spx.1_Silent_p.L391L|SILV_uc001sir.2_Silent_p.L477L	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	477	Lumenal (Potential).				melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						TATCGATACAGAACACAATCC	0.557000											OREG0021914	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	84	71					0	0	0.003610	0	0
DDX55	57696	broad.mit.edu	37	12	124093348	124093348	+	Nonsense_Mutation	SNP	A	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr12:124093348A>T	uc001ufi.2	+	6	547	c.523A>T	c.(523-525)AGA>TGA	p.R175*	DDX55_uc001ufh.2_Nonsense_Mutation_p.R28*|DDX55_uc001ufj.1_Nonsense_Mutation_p.R28*|DDX55_uc001ufk.2_Nonsense_Mutation_p.R28*	NM_020936	NP_065987	Q8NHQ9	DDX55_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	175	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000142)|Epithelial(86;0.000637)|all cancers(50;0.00772)		TGAGGCAGACAGACTTCTGGA	0.537000													80	50					0	0	0.003610	0	0
THSD1	55901	broad.mit.edu	37	13	52952408	52952408	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr13:52952408G>A	uc001vgo.2	-	5	2242	c.1697C>T	c.(1696-1698)GCG>GTG	p.A566V	THSD1_uc001vgp.2_Missense_Mutation_p.A513V|THSD1_uc010tgz.1_Missense_Mutation_p.A187V|THSD1_uc010aea.2_Missense_Mutation_p.A27V	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	566	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		GCTGGGGGCCGCATCAATGGC	0.542000													6	440					0	0	0.001984	0	0
FLJ10357	55701	broad.mit.edu	37	14	21546590	21546590	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr14:21546590C>G	uc001vzp.2	+	10	2218	c.2189C>G	c.(2188-2190)GCA>GGA	p.A730G	FLJ10357_uc001vzo.1_Intron|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Missense_Mutation_p.A16G	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	730					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CGGCTGACGGCACTGCAGAGG	0.632000													33	88					0	0	0.006230	0	0
ACIN1	22985	broad.mit.edu	37	14	23564436	23564436	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr14:23564436A>C	uc001wit.3	-	1	388	c.60T>G	c.(58-60)AAT>AAG	p.N20K	ACIN1_uc010akg.2_Missense_Mutation_p.N20K|ACIN1_uc010tnj.1_Missense_Mutation_p.N20K|C14orf119_uc001wiu.2_5'Flank	NM_014977	NP_055792	Q9UKV3	ACINU_HUMAN	apoptotic chromatin condensation inducer 1	20					apoptotic chromosome condensation|erythrocyte differentiation|positive regulation of monocyte differentiation	cytosol	ATPase activity|enzyme binding|nucleic acid binding|nucleotide binding			ovary(2)|large_intestine(1)|skin(1)	4	all_cancers(95;1.36e-05)			GBM - Glioblastoma multiforme(265;0.00816)		CTACCCCTCGATTACCACTCA	0.592000													77	88					0	0	0.003610	0	0
REC8	9985	broad.mit.edu	37	14	24648037	24648037	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr14:24648037C>T	uc001wmr.2	+	16	1545	c.1118C>T	c.(1117-1119)CCC>CTC	p.P373L	REC8_uc001wms.2_Missense_Mutation_p.P373L	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	373	Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		GCCCAGCCACCCCCAAAAGCC	0.587000													79	213					0	0	0.003610	0	0
AKAP6	9472	broad.mit.edu	37	14	33291241	33291241	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr14:33291241G>A	uc001wrq.2	+	13	4392	c.4222G>A	c.(4222-4224)GTG>ATG	p.V1408M		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1408					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TGCAGTTAACGTGTTAAAGCA	0.438000													47	64					0	0	0.003214	0	0
ADAM6	8755	broad.mit.edu	37	14	106054658	106054658	+	RNA	SNP	T	G	G	rs114771275	by1000genomes	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr14:106054658T>G	uc010tyt.1	-	3650		c.62828A>C			uc001yrs.2_RNA|uc001yrt.2_Silent_p.A31A					Parts of antibodies, mostly variable regions.												0						GGACCAGGCATGCGACGACCA	0.622000													3	65					0	0	0.001984	0	0
LOC646214	646214	broad.mit.edu	37	15	21937891	21937891	+	RNA	SNP	T	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr15:21937891T>A	uc010tzj.1	-	1		c.2849A>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						GTGTTCAAAATCAGATGGAGG	0.428000													111	685					0	0	0.003610	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11859408	11859408	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr16:11859408C>A	uc002dbk.2	-	13	1854	c.1656G>T	c.(1654-1656)AAG>AAT	p.K552N	ZC3H7A_uc002dbj.2_RNA|ZC3H7A_uc002dbl.2_Missense_Mutation_p.K552N|ZC3H7A_uc002dbm.1_Missense_Mutation_p.K462N	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	552						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TAAGGTTAATCTTTCCATTGC	0.453000													67	147					2.17656e-39	2.60125e-39	0.003610	1	0
ABCC12	94160	broad.mit.edu	37	16	48173154	48173154	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr16:48173154A>G	uc002efc.1	-	5	1097	c.751T>C	c.(751-753)TGT>CGT	p.C251R	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.C251R|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	251	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TACGCCGCACAAAAGACCATT	0.483000													59	150					0	0	0.003610	0	0
RNMTL1	55178	broad.mit.edu	37	17	694912	694912	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:694912A>T	uc002frw.2	+	4	972	c.866A>T	c.(865-867)AAC>ATC	p.N289I		NM_018146	NP_060616	Q9HC36	RMTL1_HUMAN	RNA methyltransferase like 1	289					RNA processing		protein binding|RNA binding|RNA methyltransferase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0219)		GTGGCTGACAACTGTGGCCTT	0.498000													163	135					0	0	0.003610	0	0
RNMTL1	55178	broad.mit.edu	37	17	695133	695133	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:695133A>C	uc002frw.2	+	4	1193	c.1087A>C	c.(1087-1089)AGC>CGC	p.S363R		NM_018146	NP_060616	Q9HC36	RMTL1_HUMAN	RNA methyltransferase like 1	363					RNA processing		protein binding|RNA binding|RNA methyltransferase activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0219)		CTACGGCGTGAGCCTGGAGTC	0.627000													76	45					0	0	0.003610	0	0
NEURL4	84461	broad.mit.edu	37	17	7230249	7230249	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:7230249G>A	uc002gga.1	-	4	880	c.873C>T	c.(871-873)AAC>AAT	p.N291N	NEURL4_uc002ggb.1_Silent_p.N291N|NEURL4_uc002ggc.1_5'Flank	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	291							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGGAGCTCAGGTTCACATTCA	0.562000													85	60					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10356998	10356998	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:10356998C>T	uc002gmn.2	-	23	3007	c.2896G>A	c.(2896-2898)GCC>ACC	p.A966T	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	966	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCAACCTTGGCCAGTGTCAGC	0.398000													6	600					0	0	0.001168	0	0
MAP3K14	9020	broad.mit.edu	37	17	43351921	43351921	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:43351921A>G	uc002iiw.1	-	8	1439	c.1330T>C	c.(1330-1332)TGT>CGT	p.C444R	MAP3K14_uc002iiu.1_5'Flank|MAP3K14_uc010daj.1_RNA|MAP3K14_uc002iiv.1_Missense_Mutation_p.C28R	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	444	Interaction with ZFP91.|Protein kinase.				cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						AATCCTGCACATGCCATCAGC	0.577000													14	60					0	0	0.002450	0	0
HLF	3131	broad.mit.edu	37	17	53398135	53398135	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:53398135G>A	uc002iug.1	+	4	1308	c.783G>A	c.(781-783)GAG>GAA	p.E261E	HLF_uc010dce.1_Silent_p.E176E|HLF_uc002iuh.2_Silent_p.E176E|HLF_uc010wni.1_Silent_p.E208E	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	261	Leucine-zipper.				multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						CGTTCCTGGAGAAGGAGAACT	0.617000			T	TCF3	ALL								23	48					0	0	0.002299	0	0
SCN4A	6329	broad.mit.edu	37	17	62020429	62020429	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:62020429G>A	uc002jds.1	-	23	4122	c.4045C>T	c.(4045-4047)CTC>TTC	p.L1349F		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1349	Helical; Name=S1 of repeat IV; (Potential).|IV.				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TTCGTCACGAGGTCATACACC	0.567000													58	157					0	0	0.003610	0	0
GNA13	10672	broad.mit.edu	37	17	63049838	63049838	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr17:63049838C>A	uc002jfc.2	-	2	501	c.292G>T	c.(292-294)GTG>TTG	p.V98L	GNA13_uc010wqh.1_Missense_Mutation_p.V3L	NM_006572	NP_006563	Q14344	GNA13_HUMAN	guanine nucleotide binding protein (G protein),	98					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase D activity|cellular component movement|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex|melanosome	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity|type 1 angiotensin receptor binding				0						TCAACCAGCACCCTCATACCT	0.383000													167	140					2.0106e-78	2.49416e-78	0.003610	1	0
JUNB	3726	broad.mit.edu	37	19	12903546	12903546	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr19:12903546G>A	uc002mvc.2	+	1	1237	c.961G>A	c.(961-963)GTG>ATG	p.V321M	JUNB_uc002mvb.2_RNA	NM_002229	NP_002220	P17275	JUNB_HUMAN	jun B proto-oncogene	321	Leucine-zipper.					chromatin|nucleus	protein dimerization activity|transcription coactivator activity|transcription corepressor activity			lung(2)|central_nervous_system(1)	3						CCGGGAGCAGGTGGCCCAGCT	0.652000													3	18					0	0	0.004672	0	0
RETSAT	54884	broad.mit.edu	37	2	85571180	85571180	+	Missense_Mutation	SNP	G	A	A	rs149307146	by1000genomes	TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:85571180G>A	uc002spd.2	-	9	1666	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	RETSAT_uc010fge.2_Intron|RETSAT_uc010ysm.1_Missense_Mutation_p.S431F|RETSAT_uc010fgf.2_Missense_Mutation_p.S283F	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	492					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	TTCCACAAAGGAGTTTTTGAA	0.537000													4	161					0	0	0.000248	0	0
DARS	1615	broad.mit.edu	37	2	136680361	136680361	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:136680361A>C	uc002tux.1	-	9	988	c.804T>G	c.(802-804)ATT>ATG	p.I268M	DARS_uc010fnj.1_Missense_Mutation_p.I168M	NM_001349	NP_001340	P14868	SYDC_HUMAN	aspartyl-tRNA synthetase	268					aspartyl-tRNA aminoacylation|protein complex assembly	cytosol|nuclear membrane|plasma membrane|soluble fraction	aminoacylase activity|aspartate-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.168)	L-Aspartic Acid(DB00128)	TACCTGGTCCAATAGAGAAAA	0.308000													62	74					0	0	0.003610	0	0
PPIG	9360	broad.mit.edu	37	2	170460568	170460568	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:170460568A>G	uc002uez.2	+	3	237	c.17A>G	c.(16-18)CAA>CGA	p.Q6R	PPIG_uc010fpx.2_Missense_Mutation_p.Q6R|PPIG_uc010fpy.2_Intron|PPIG_uc002ufa.2_Missense_Mutation_p.Q6R|PPIG_uc002ufb.2_Missense_Mutation_p.Q6R|PPIG_uc002ufc.1_Missense_Mutation_p.Q6R|PPIG_uc002ufd.2_Missense_Mutation_p.Q6R	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	6					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	ATAAAGGTTCAACGTCCTCGA	0.308000													37	63					0	0	0.008740	0	0
ZAK	51776	broad.mit.edu	37	2	174097114	174097114	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:174097114G>T	uc002uhz.2	+	14	1330	c.1130G>T	c.(1129-1131)CGG>CTG	p.R377L	uc002uib.2_Intron	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	377	SAM.				activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			ACAGGGAAGCGGCTGCTGCTG	0.428000													128	95					5.22802e-61	6.40432e-61	0.003610	1	0
AGPS	8540	broad.mit.edu	37	2	178402850	178402850	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:178402850G>A	uc002ull.2	+	20	1951	c.1904G>A	c.(1903-1905)GGC>GAC	p.G635D	AGPS_uc010zfb.1_Missense_Mutation_p.G545D	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	635					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			TCTGATGTCGGCTTTGGGATG	0.373000													4	204					0	0	0.000248	0	0
TTN	7273	broad.mit.edu	37	2	179596083	179596083	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:179596083C>T	uc010zfg.1	-	56	13902	c.13678G>A	c.(13678-13680)GCC>ACC	p.A4560T	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.A1221T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5487							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCATTTTTGGCCTGACAGACA	0.403000													5	448					0	0	0.001168	0	0
GLS	2744	broad.mit.edu	37	2	191827660	191827660	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:191827660A>G	uc002usf.2	+	18	2222	c.1958A>G	c.(1957-1959)GAC>GGC	p.D653G	GLS_uc002ush.2_Missense_Mutation_p.D314G|GLS_uc010zgi.1_3'UTR|GLS_uc010zgj.1_Missense_Mutation_p.D158G	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	653					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GGAGATTCTGACAACGGGAAG	0.378000													46	63					0	0	0.003214	0	0
CYP20A1	57404	broad.mit.edu	37	2	204154489	204154489	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:204154489T>C	uc002uzv.3	+	10	1595	c.973T>C	c.(973-975)TAT>CAT	p.Y325H	CYP20A1_uc002uzx.3_Missense_Mutation_p.Y223H|CYP20A1_uc010zif.1_Missense_Mutation_p.Y333H|CYP20A1_uc002uzy.3_Missense_Mutation_p.Y223H|CYP20A1_uc002uzw.3_RNA|CYP20A1_uc010ftw.2_Missense_Mutation_p.Y55H	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	325						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						TTAAAACAGATATTGTCAGCA	0.328000													51	65					0	0	0.003610	0	0
HDLBP	3069	broad.mit.edu	37	2	242170343	242170343	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr2:242170343G>C	uc002waz.2	-	25	3533	c.3305C>G	c.(3304-3306)ACC>AGC	p.T1102S	HDLBP_uc002wba.2_Missense_Mutation_p.T1102S|HDLBP_uc002wbb.2_Missense_Mutation_p.T1054S	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	1102	KH 13.				cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		CCCTGTGATGGTAATTTGGTC	0.527000													37	48					0	0	0.004878	0	0
CSNK2A1	1457	broad.mit.edu	37	20	467041	467041	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr20:467041T>C	uc002wdw.1	-	13	1432	c.1039A>G	c.(1039-1041)AGC>GGC	p.S347G	CSNK2A1_uc002wdx.1_Missense_Mutation_p.S347G|CSNK2A1_uc002wdy.1_Missense_Mutation_p.S211G	NM_177559	NP_808227	P68400	CSK21_HUMAN	casein kinase II alpha 1 subunit isoform a	347					axon guidance|Wnt receptor signaling pathway	cytosol|NuRD complex|plasma membrane|Sin3 complex	ATP binding|protein N-terminus binding|protein serine/threonine kinase activity			ovary(1)	1		Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.0969)			TTGGCGCTGCTGACGGGCGTA	0.428000													29	88					0	0	0.001786	0	0
C20orf26	26074	broad.mit.edu	37	20	20269294	20269294	+	Silent	SNP	G	A	A	rs145397130		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr20:20269294G>A	uc002wru.2	+	23	2914	c.2838G>A	c.(2836-2838)ACG>ACA	p.T946T	C20orf26_uc002wrw.2_Intron	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	946										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		ATTATGAAACGTTTAAAGCCC	0.413000													12	532					0	0	0.001855	0	0
FRG1B	284802	broad.mit.edu	37	20	29625934	29625934	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr20:29625934C>T	uc010ztl.1	+	2	120	c.88C>T	c.(88-90)CAT>TAT	p.H30Y	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ACTTGTTGGGCATTCAGATGC	0.338000													6	152					0	0	0.008291	0	0
ZNF501	115560	broad.mit.edu	37	3	44776081	44776081	+	Silent	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr3:44776081A>G	uc003cnu.1	+	3	569	c.168A>G	c.(166-168)GGA>GGG	p.G56G	ZNF501_uc003cnv.1_Silent_p.G56G	NM_145044	NP_659481	Q96CX3	ZN501_HUMAN	zinc finger protein 501	56	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00843)|KIRC - Kidney renal clear cell carcinoma(197;0.0463)|Kidney(197;0.0579)		GTGAATGTGGAAGTTGTTTCC	0.403000													58	124					0	0	0.003610	0	0
ATXN7	6314	broad.mit.edu	37	3	63973881	63973881	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr3:63973881G>A	uc003dlw.3	+	9	1795	c.1242G>A	c.(1240-1242)CCG>CCA	p.P414P	ATXN7_uc003dlv.2_Silent_p.P414P|ATXN7_uc010hnv.2_Silent_p.P414P|ATXN7_uc011bfn.1_Silent_p.P269P	NM_000333	NP_000324	O15265	ATX7_HUMAN	ataxin 7 isoform a	414	Pro-rich.				cell death|histone deubiquitination|nucleus organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nuclear matrix|nucleolus	protein binding|zinc ion binding				0		Prostate(884;0.0181)		BRCA - Breast invasive adenocarcinoma(55;0.000614)|KIRC - Kidney renal clear cell carcinoma(15;0.00294)|Kidney(15;0.00305)		TCAGGGACCCGCATCCCGCCC	0.512000													5	205					0	0	0.001984	0	0
RUVBL1	8607	broad.mit.edu	37	3	127831784	127831784	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr3:127831784G>A	uc003ekh.2	-	3	412	c.308C>T	c.(307-309)TCA>TTA	p.S103L	RUVBL1_uc003ekf.2_Missense_Mutation_p.S43L|RUVBL1_uc010hss.2_Missense_Mutation_p.S103L	NM_003707	NP_003698	Q9Y265	RUVB1_HUMAN	RuvB-like 1	103					cell division|CenH3-containing nucleosome assembly at centromere|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|mitosis|regulation of growth|regulation of transcription from RNA polymerase II promoter|spermatogenesis|transcription, DNA-dependent	Golgi apparatus|Ino80 complex|membrane|microtubule organizing center|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|DNA helicase activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.181)		GATCTCAGTTGAGTAAACTTC	0.502000													84	154					0	0	0.003610	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715417	99715417	+	RNA	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr5:99715417A>G	uc011cuw.1	-	4		c.493T>C				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						ACAATCCCATACCGGTAACAT	0.607000													2	7					0	0	0.004672	0	0
PCDH1	5097	broad.mit.edu	37	5	141233645	141233645	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr5:141233645C>G	uc003llp.2	-	5	3793	c.3676G>C	c.(3676-3678)GCA>CCA	p.A1226P		NM_032420	NP_115796	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 2 precursor	Error:Variant_position_missing_in_Q08174_after_alignment					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TGGGCAGATGCCGGTGTGGCT	0.667000													16	13					0	0	0.007413	0	0
CCDC99	54908	broad.mit.edu	37	5	169023614	169023614	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr5:169023614A>G	uc003mae.3	+	8	1220	c.941A>G	c.(940-942)GAG>GGG	p.E314G	CCDC99_uc010jjj.2_Missense_Mutation_p.E243G|CCDC99_uc011deq.1_Missense_Mutation_p.E131G|CCDC99_uc010jjk.2_Missense_Mutation_p.E40G	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	314	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACTGAATTTGAGCAGCAGGAA	0.348000													3	132					0	0	0.004672	0	0
SNRNP48	154007	broad.mit.edu	37	6	7601644	7601644	+	Missense_Mutation	SNP	G	C	C	rs143226311		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr6:7601644G>C	uc003mxr.2	+	5	541	c.482G>C	c.(481-483)CGT>CCT	p.R161P	SNRNP48_uc003mxs.2_RNA	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	161					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						CAAGCTGATCGTCTTGCCCTC	0.368000													54	95					0	0	0.003610	0	0
OR2B3	442184	broad.mit.edu	37	6	29054989	29054989	+	Missense_Mutation	SNP	T	G	G	rs139090624		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr6:29054989T>G	uc003nlx.2	-	1	102	c.37A>C	c.(37-39)ATA>CTA	p.I13L		NM_001005226	NP_001005226			olfactory receptor, family 2, subfamily B,											skin(1)	1						CCAAGTAGTATAAACTCTTTT	0.373000													40	54					0	0	0.007835	0	0
CDK13	8621	broad.mit.edu	37	7	40127807	40127807	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr7:40127807T>C	uc003thh.3	+	12	3394	c.3112T>C	c.(3112-3114)TCC>CCC	p.S1038P	CDK13_uc003thi.3_Missense_Mutation_p.S1038P|CDK13_uc003thj.2_Missense_Mutation_p.S89P	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1038					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						TGATGATGTTTCCACAATTAA	0.453000													87	98					0	0	0.003610	0	0
TYW1B	441250	broad.mit.edu	37	7	72093896	72093896	+	Silent	SNP	C	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr7:72093896C>T	uc011kej.1	-	15	1752	c.1593G>A	c.(1591-1593)GGG>GGA	p.G531G	TYW1B_uc011keh.1_Silent_p.G369G|TYW1B_uc011kei.1_Silent_p.G157G	NM_001145440	NP_001138912	Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B isoform	531					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity				0						AGTCAGGATTCCCCAGGGACA	0.537000													3	21					0	0	0.001168	0	0
CUX1	1523	broad.mit.edu	37	7	101837159	101837159	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr7:101837159G>A	uc003uyx.3	+	13	1152	c.1114G>A	c.(1114-1116)GCT>ACT	p.A372T	CUX1_uc003uys.3_Missense_Mutation_p.A383T|CUX1_uc003uyt.2_Missense_Mutation_p.A383T|CUX1_uc011kkn.1_Missense_Mutation_p.A344T|CUX1_uc003uyw.2_Missense_Mutation_p.A337T|CUX1_uc003uyv.2_Missense_Mutation_p.A367T|CUX1_uc003uyu.2_Missense_Mutation_p.A381T	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	372					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GTCCGAGGGCGCTGGGACACA	0.458000													48	36					0	0	0.003610	0	0
SLC13A1	6561	broad.mit.edu	37	7	122774491	122774491	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr7:122774491C>G	uc003vkm.2	-	8	930	c.905G>C	c.(904-906)TGG>TCG	p.W302S	SLC13A1_uc010lks.2_Missense_Mutation_p.W178S	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	302	Helical; (Potential).					integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	CCACTGAAGCCAGATCCAGGA	0.418000													63	71					0	0	0.003610	0	0
SSPO	23145	broad.mit.edu	37	7	149493511	149493511	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr7:149493511G>A	uc010lpk.2	+	45	6587	c.6587G>A	c.(6586-6588)CGC>CAC	p.R2196H		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2196	F5/8 type C.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			ACTTTCGGCCGCATGGTGCAG	0.607000													7	269					0	0	0.001984	0	0
C8orf41	80185	broad.mit.edu	37	8	33369577	33369577	+	Silent	SNP	G	A	A			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr8:33369577G>A	uc003xjl.3	-	1	1080	c.555C>T	c.(553-555)TGC>TGT	p.C185C	C8orf41_uc003xjk.3_Silent_p.C185C|C8orf41_uc010lvv.2_Silent_p.C185C|C8orf41_uc003xjm.3_Silent_p.C185C|C8orf41_uc003xjn.1_Silent_p.C185C	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	185							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		CCACAGAACCGCATTCAGTAA	0.483000													5	347					0	0	0.001984	0	0
SPTAN1	6709	broad.mit.edu	37	9	131388186	131388186	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr9:131388186T>G	uc004bvl.3	+	47	6306	c.6193T>G	c.(6193-6195)TGG>GGG	p.W2065G	SPTAN1_uc004bvm.3_Missense_Mutation_p.W2070G|SPTAN1_uc004bvn.3_Missense_Mutation_p.W2045G|SPTAN1_uc010mye.1_5'Flank|SPTAN1_uc010myf.1_5'Flank	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	2065	Spectrin 21.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						CATGAAGAGGTGGAGCCAGCT	0.592000													9	165					0	0	0.004007	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597000													6	114					0	0	0.003080	0	0
MAGEB4	4115	broad.mit.edu	37	X	30261219	30261219	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chrX:30261219G>T	uc004dcb.2	+	1	1051	c.967G>T	c.(967-969)GCC>TCC	p.A323S	MAGEB1_uc004dcc.2_5'Flank|MAGEB1_uc004dcd.2_5'Flank	NM_002367	NP_002358	O15481	MAGB4_HUMAN	melanoma antigen family B, 4	323										ovary(1)	1						CAGAGTTGCAGCCAGGCGTGG	0.522000													21	3					4.30721e-22	5.08562e-22	0.001523	1	0
DMD	1756	broad.mit.edu	37	X	32867885	32867885	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chrX:32867885C>T	uc004dda.1	-	3	390	c.146G>A	c.(145-147)CGC>CAC	p.R49H	DMD_uc004dcz.2_5'UTR|DMD_uc004dcy.1_Missense_Mutation_p.R45H|DMD_uc004ddb.1_Missense_Mutation_p.R41H|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.R41H|DMD_uc010ngq.1_RNA|DMD_uc010ngr.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	49	CH 1.|Actin-binding.		Missing (in BMD).		muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GTCTAGGAGGCGCCTCCCATC	0.393000													7	77					0	0	0.003080	0	0
IL9R	3581	broad.mit.edu	37	X	155235803	155235803	+	Missense_Mutation	SNP	C	G	G	rs150341783		TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chrX:155235803C>G	uc004fnv.1	+	7	1016	c.837C>G	c.(835-837)ATC>ATG	p.I279M	IL9R_uc010nvn.2_Missense_Mutation_p.I258M|IL9R_uc004fnu.1_Missense_Mutation_p.I314M	NM_002186	NP_002177	Q01113	IL9R_HUMAN	interleukin 9 receptor precursor	279	Helical; (Potential).				cell proliferation	extracellular space|integral to plasma membrane	interleukin-9 receptor activity				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CTGTGTCCATCTTTCTCCTGC	0.512000													3	38					0	0	0.001368	0	0
SPON1	10418	broad.mit.edu	37	11	14276276	14276277	+	Splice_Site	DEL	GT	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr11:14276276_14276277delGT	uc001mle.2	+	9	1630	c.1092_splice	c.e9+1	p.E364_splice		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GACCTATGAGGTGTGTGTGTGT	0.594													7	93	---	---	---	---					
PLA2G4F	255189	broad.mit.edu	37	15	42448690	42448690	+	Frame_Shift_Del	DEL	C	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr15:42448690delC	uc001zoz.2	-	1	121	c.58delG	c.(58-60)GCAfs	p.A20fs	PLA2G4F_uc010bcr.2_5'UTR|PLA2G4F_uc001zpa.2_5'UTR|PLA2G4F_uc010bcs.2_5'UTR	NM_213600	NP_998765	Q68DD2	PA24F_HUMAN	phospholipase A2, group IVF	20					phospholipid catabolic process	cytosol|lysosomal membrane	metal ion binding|phospholipase A2 activity			ovary(4)	4		all_cancers(109;4.82e-12)|all_epithelial(112;5.64e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.97e-07)		AGCAGCACTGCCCCCAGGAGG	0.652													4	6	---	---	---	---					
SPG7	6687	broad.mit.edu	37	16	89613076	89613077	+	Frame_Shift_Ins	INS	-	GATTTTT	GATTTTT			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr16:89613076_89613077insGATTTTT	uc002fnj.2	+	11	1481_1482	c.1460_1461insGATTTTT	c.(1459-1461)GAGfs	p.E487fs	SPG7_uc002fnk.1_RNA	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	487	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		GAGAGGCGGGAGATTTTTGAGC	0.579													7	157	---	---	---	---					
PKN1	5585	broad.mit.edu	37	19	14554306	14554307	+	Frame_Shift_Ins	INS	-	T	T			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr19:14554306_14554307insT	uc002myp.2	+	3	515_516	c.347_348insT	c.(346-348)GGTfs	p.G116fs	PKN1_uc002myq.2_Frame_Shift_Ins_p.G122fs	NM_002741	NP_002732	Q16512	PKN1_HUMAN	protein kinase N1 isoform 2	116					activation of JUN kinase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	endosome|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|GTP-Rho binding|histone binding|histone deacetylase binding|histone kinase activity (H3-T11 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|Rac GTPase binding			ovary(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8						CCTGGTGCGGGTGGCCCCACCT	0.668													8	15	---	---	---	---					
WDFY3	23001	broad.mit.edu	37	4	85630153	85630153	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr4:85630153delA	uc003hpd.2	-	53	8534	c.8126delT	c.(8125-8127)TTGfs	p.L2709fs	WDFY3_uc003hpe.1_Frame_Shift_Del_p.L320fs	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	2709	BEACH.					cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CAAATGCATCAAATATTGGAA	0.343													92	121	---	---	---	---					
MCCC2	64087	broad.mit.edu	37	5	70931074	70931075	+	Splice_Site	INS	-	TA	TA			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr5:70931074_70931075insTA	uc003kbs.3	+	10	1137	c.999_splice	c.e10+1	p.E333_splice	MCCC2_uc010iyv.1_Splice_Site_p.E333_splice|MCCC2_uc003kbt.3_Splice_Site|MCCC2_uc003kbu.1_Frame_Shift_Ins_p.V203fs	NM_022132	NP_071415	Q9HCC0	MCCB_HUMAN	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)						leucine catabolic process	mitochondrial inner membrane|mitochondrial matrix	ATP binding|methylcrotonoyl-CoA carboxylase activity			ovary(1)	1		Lung NSC(167;0.000697)|Prostate(74;0.0107)|Ovarian(174;0.0175)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.04e-54)	Biotin(DB00121)	TGTCCGAGAGGTATGTGAAAGT	0.406													48	66	---	---	---	---					
SLIT3	6586	broad.mit.edu	37	5	168135045	168135045	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr5:168135045delT	uc003mab.2	-	26	3200	c.2780delA	c.(2779-2781)AATfs	p.N927fs	SLIT3_uc010jjg.2_Frame_Shift_Del_p.N934fs	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	927	EGF-like 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGTCCCGTTATTCTTGCACGG	0.592													48	55	---	---	---	---					
ALDOB	229	broad.mit.edu	37	9	104190767	104190770	+	Frame_Shift_Del	DEL	TTTG	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chr9:104190767_104190770delTTTG	uc004bbk.2	-	4	442_445	c.360_363delCAAA	c.(358-363)AACAAAfs	p.N120fs		NM_000035	NP_000026	P05062	ALDOB_HUMAN	aldolase B, fructose-bisphosphate	120_121			Missing (in HFI).		fructose 1,6-bisphosphate metabolic process|fructose catabolic process|gluconeogenesis|glycolysis|NADH oxidation|positive regulation of ATPase activity|vacuolar proton-transporting V-type ATPase complex assembly	centriolar satellite|cytosol	ATPase binding|cytoskeletal protein binding|fructose binding|fructose-bisphosphate aldolase activity|identical protein binding			skin(1)	1		Acute lymphoblastic leukemia(62;0.0559)				TGGTGGTTTCTTTGTTTGTTCCTG	0.402													104	183	---	---	---	---					
TSIX	9383	broad.mit.edu	37	X	73047124	73047125	+	RNA	DEL	AC	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chrX:73047124_73047125delAC	uc004ebn.2	+	1		c.35085_35086delAC			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						GCCACACATGACACACACACAC	0.470													9	122	---	---	---	---					
XPNPEP2	7512	broad.mit.edu	37	X	128885748	128885749	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-B9-4617-01A-01D-1252-08	TCGA-B9-4617-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	aed3977e-c899-4a95-b26a-957bdbd865a6	513c77a4-6151-4d55-9b91-4b9923b7d895	g.chrX:128885748_128885749delTC	uc004eut.1	+	9	1011_1012	c.767_768delTC	c.(766-768)ATCfs	p.I256fs		NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	256					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						GCCAGTGACATCCCCTATAACC	0.416													234	49	---	---	---	---					
