Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NADK	65220	broad.mit.edu	37	1	1686870	1686870	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:1686870A>T	uc009vkw.2	-	7	752	c.631T>A	c.(631-633)TTC>ATC	p.F211I	NADK_uc001aic.2_Missense_Mutation_p.F211I|NADK_uc001aid.3_Missense_Mutation_p.F211I|NADK_uc001aie.2_Missense_Mutation_p.F356I|NADK_uc010nyv.1_Missense_Mutation_p.F179I|NADK_uc009vkx.1_Missense_Mutation_p.F89I	NM_023018	NP_075394	O95544	NADK_HUMAN	NAD kinase	211					ATP metabolic process|NAD metabolic process|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|NAD+ kinase activity|protein binding				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.61e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;8.75e-37)|OV - Ovarian serous cystadenocarcinoma(86;2.33e-23)|GBM - Glioblastoma multiforme(42;1.35e-07)|Colorectal(212;0.000203)|COAD - Colon adenocarcinoma(227;0.000225)|Kidney(185;0.00265)|STAD - Stomach adenocarcinoma(132;0.00655)|BRCA - Breast invasive adenocarcinoma(365;0.00855)|KIRC - Kidney renal clear cell carcinoma(229;0.0382)|Lung(427;0.207)		GGGGTCAGGAAGCCCAGGGAG	0.607000													37	179					0	0	0.006999	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946521	16946521	+	Splice_Site	SNP	T	C	C	rs140417840	by1000genomes	TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:16946521T>C	uc010ocf.1	-	3		c.379_splice	c.e3-1		CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_Intron					Homo sapiens mRNA for FLJ00313 protein.												0						TGCTGCCTCCTAGGGGGCCAG	0.677000													3	15					0	0	0.004672	0	0
RPL11	6135	broad.mit.edu	37	1	24021204	24021204	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:24021204T>G	uc001bhk.2	+	4	339	c.319T>G	c.(319-321)TTT>GTT	p.F107V	RPL11_uc001bhl.2_Missense_Mutation_p.F106V|RPL11_uc001bhm.2_Missense_Mutation_p.F96V|RPL11_uc001bhn.1_Missense_Mutation_p.F96V	NM_000975	NP_000966	P62913	RL11_HUMAN	ribosomal protein L11	107					endocrine pancreas development|protein localization to nucleus|protein targeting|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|rRNA binding|structural constituent of ribosome			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.13e-24)|Colorectal(126;5.06e-08)|COAD - Colon adenocarcinoma(152;2.92e-06)|GBM - Glioblastoma multiforme(114;4.4e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|KIRC - Kidney renal clear cell carcinoma(1967;0.00322)|STAD - Stomach adenocarcinoma(196;0.0124)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0837)|LUSC - Lung squamous cell carcinoma(448;0.185)		AAACTTTGGTTTTGGGATCCA	0.403000													39	76					0	0	0.021022	0	0
S100A7L2	645922	broad.mit.edu	37	1	153409541	153409541	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:153409541C>A	uc010pdx.1	-	3	410	c.332G>T	c.(331-333)AGC>ATC	p.S111I		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGATCACTGGCTTCCCCCGGA	0.498000													49	203					3.88204e-17	9.70509e-17	0.014410	1	0
ZBTB37	84614	broad.mit.edu	37	1	173839638	173839638	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:173839638T>C	uc009wwp.1	+	3	551	c.275T>C	c.(274-276)ATA>ACA	p.I92T	GAS5_uc001gjj.2_5'Flank|GAS5_uc001gjk.2_5'Flank|SNORD74_uc001gjo.1_5'Flank|ZBTB37_uc001gjp.1_Missense_Mutation_p.I92T|ZBTB37_uc001gjq.3_Missense_Mutation_p.I92T|ZBTB37_uc001gjr.2_Missense_Mutation_p.I92T	NM_001122770	NP_001116242	Q5TC79	ZBT37_HUMAN	zinc finger and BTB domain containing 37 isoform	92	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACAGGGCGGATATGCCTGCAA	0.433000													18	52					0	0	0.006122	0	0
NFASC	23114	broad.mit.edu	37	1	204923960	204923960	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:204923960C>A	uc001hbj.2	+	7	744	c.416C>A	c.(415-417)TCT>TAT	p.S139Y	NFASC_uc001hbh.2_Missense_Mutation_p.S139Y|NFASC_uc010pqz.1_Missense_Mutation_p.S133Y|NFASC_uc010pra.1_Missense_Mutation_p.S133Y|NFASC_uc001hbi.2_Missense_Mutation_p.S133Y|NFASC_uc009xbg.1_Missense_Mutation_p.S206Y|NFASC_uc010prb.1_Missense_Mutation_p.S133Y|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_5'Flank	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	139	Extracellular (Potential).				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TCTCCAGAATCTCCTCTGTGG	0.597000													48	133					9.58827e-17	2.34607e-16	0.014410	1	0
IFIT5	24138	broad.mit.edu	37	10	91177427	91177427	+	Silent	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr10:91177427A>G	uc010qnh.1	+	2	702	c.471A>G	c.(469-471)CAA>CAG	p.Q157Q	IFIT5_uc010qng.1_Silent_p.Q157Q	NM_012420	NP_036552	Q13325	IFIT5_HUMAN	interferon-induced protein with	157	TPR 3.						binding				0						AGTATTATCAAAAGGCTAAAG	0.443000													21	66					0	0	0.014323	0	0
POLL	27343	broad.mit.edu	37	10	103347208	103347208	+	Translation_Start_Site	SNP	T	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr10:103347208T>C	uc001ktg.1	-	1	676	c.-90A>G	c.(-92--88)ATAGG>ATGGG		DPCD_uc010qpz.1_5'UTR|POLL_uc001kth.1_Translation_Start_Site|POLL_uc001kti.1_Intron|POLL_uc001ktj.1_Intron|POLL_uc001ktf.2_Intron|POLL_uc001ktk.1_Intron|POLL_uc010qqa.1_Intron|POLL_uc010qqb.1_Intron|POLL_uc001ktm.2_Intron|POLL_uc001ktl.2_Intron|POLL_uc010qqc.1_Intron|POLL_uc010qqd.1_Intron|DPCD_uc001ktn.2_5'Flank	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda						DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		CCCCTTTGCCTATGGAGGTAG	0.577000								DNA_polymerases_(catalytic_subunits)					6	11					0	0	0.001168	0	0
DMBT1	1755	broad.mit.edu	37	10	124352013	124352013	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr10:124352013G>A	uc001lgk.1	+	20	2508	c.2402G>A	c.(2401-2403)CGC>CAC	p.R801H	DMBT1_uc001lgl.1_Missense_Mutation_p.R791H|DMBT1_uc001lgm.1_Intron|DMBT1_uc009xzz.1_Missense_Mutation_p.R801H|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.R414H	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	801	SRCR 6.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GATGATGTGCGCTGCTCAGGA	0.607000													20	258					0	0	0.008871	0	0
HNRNPUL2	221092	broad.mit.edu	37	11	62489600	62489600	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr11:62489600C>A	uc001nuw.2	-	7	1541	c.1348G>T	c.(1348-1350)GAG>TAG	p.E450*	HNRNPUL2_uc001nuu.1_RNA	NM_001079559	NP_001073027	Q1KMD3	HNRL2_HUMAN	heterogeneous nuclear ribonucleoprotein U-like	450					cell killing	nucleus	ATP binding|nucleic acid binding				0						TCACATTCCTCTATGGTCTTG	0.517000													24	64					2.39556e-15	5.73937e-15	0.016522	1	0
Unknown	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr12:92018T>C	uc010sdi.1	-	2	320	c.292A>G	c.(292-294)AGT>GGT	p.S98G	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		GACTCCACACTCTCCTGGGTT	0.592000													3	4					0	0	0.004672	0	0
RAD51AP1	10635	broad.mit.edu	37	12	4657343	4657343	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr12:4657343A>T	uc001qmw.2	+	6	612	c.456A>T	c.(454-456)TTA>TTT	p.L152F	RAD51AP1_uc001qmu.2_Missense_Mutation_p.L135F|RAD51AP1_uc001qmv.2_Missense_Mutation_p.L98F|RAD51AP1_uc010sep.1_Missense_Mutation_p.L17F|RAD51AP1_uc010seq.1_Missense_Mutation_p.L17F|RAD51AP1_uc009zeg.2_5'Flank	NM_001130862	NP_001124334	Q96B01	R51A1_HUMAN	RAD51 associated protein 1 isoform a	152					double-strand break repair via homologous recombination		double-stranded DNA binding|protein binding|protein binding|RNA binding|single-stranded DNA binding				0			Colorectal(7;0.00306)|COAD - Colon adenocarcinoma(12;0.0389)			GTGATTATTTAGGTAAGtttt	0.289000													40	58					0	0	0.006999	0	0
LMBR1L	55716	broad.mit.edu	37	12	49500795	49500795	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr12:49500795G>T	uc001rth.3	-	2	448	c.106C>A	c.(106-108)CTC>ATC	p.L36I	LMBR1L_uc001rtg.3_5'UTR|LMBR1L_uc001rti.3_Missense_Mutation_p.L36I|LMBR1L_uc001rtj.1_5'Flank|LMBR1L_uc009zld.1_5'UTR|LMBR1L_uc010smf.1_RNA|LMBR1L_uc009zle.1_Missense_Mutation_p.P92H	NM_018113	NP_060583	Q6UX01	LMBRL_HUMAN	lipocalin-interacting membrane receptor	36	LCN1-binding.|Helical; (Potential).				endocytosis	integral to membrane|plasma membrane	receptor activity			pancreas(1)	1						ATGTGGCAGAGGATGTACAGT	0.512000													119	142					1.54401e-80	4.12932e-80	0.014410	1	0
PAH	5053	broad.mit.edu	37	12	103234258	103234258	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr12:103234258A>G	uc001tjq.1	-	13	1707	c.1235T>C	c.(1234-1236)GTT>GCT	p.V412A		NM_000277	NP_000268	P00439	PH4H_HUMAN	phenylalanine hydroxylase	412					catecholamine biosynthetic process|L-phenylalanine catabolic process|neurotransmitter biosynthetic process	cytosol	phenylalanine 4-monooxygenase activity			ovary(4)	4					Epinephrine(DB00668)|L-Phenylalanine(DB00120)|Levodopa(DB01235)|Norepinephrine(DB00368)|Tetrahydrobiopterin(DB00360)	GTCGTAGCGAACTGAGAAGGG	0.448000													52	64					0	0	0.014410	0	0
GPR109A	338442	broad.mit.edu	37	12	123187395	123187395	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr12:123187395T>A	uc001ucx.1	-	1	510	c.436A>T	c.(436-438)ATC>TTC	p.I146F	GPR81_uc001ucw.1_Intron	NM_177551	NP_808219	Q8TDS4	HCAR2_HUMAN	G protein-coupled receptor 109A	146	Helical; Name=4; (Potential).				negative regulation of lipid catabolic process|neutrophil apoptosis|positive regulation of adiponectin secretion|positive regulation of neutrophil apoptosis	integral to membrane|plasma membrane	nicotinic acid receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	CAAGAGATGATGGCTGCTGTC	0.557000													30	115					0	0	0.008361	0	0
LOC284232	284232	broad.mit.edu	37	13	19415742	19415742	+	RNA	SNP	T	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr13:19415742T>C	uc010tcj.1	-	1		c.30368A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCTGTTTTCCTAATCTTTCTT	0.313000													3	69					0	0	0.009096	0	0
CHRNA5	1138	broad.mit.edu	37	15	78885562	78885562	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr15:78885562A>C	uc002bdy.2	+	6	1536	c.1374A>C	c.(1372-1374)TTA>TTC	p.L458F	CHRNA3_uc002bea.2_Intron|CHRNA3_uc002beb.2_Intron|CHRNA5_uc002bdz.2_3'UTR|CHRNA3_uc010blg.1_Intron	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	458	Extracellular (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAAATATATTAATACCAGTTC	0.338000													12	38					0	0	0.013537	0	0
ADCY9	115	broad.mit.edu	37	16	4029168	4029168	+	Silent	SNP	G	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr16:4029168G>A	uc002cvx.2	-	8	3167	c.2628C>T	c.(2626-2628)CCC>CCT	p.P876P		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	876	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CGGCCAGTGCGGGAAGCGACA	0.582000													24	108					0	0	0.006320	0	0
ACSM3	6296	broad.mit.edu	37	16	20787239	20787239	+	Silent	SNP	C	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr16:20787239C>T	uc002dhr.2	+	3	485	c.298C>T	c.(298-300)CTG>TTG	p.L100L	ACSM3_uc002dhq.2_Silent_p.L100L|ACSM3_uc010vba.1_Silent_p.L92L	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	100					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TTTTGAGGAACTGGGATCTCT	0.458000													38	170					0	0	0.007835	0	0
RNF167	26001	broad.mit.edu	37	17	4848277	4848277	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr17:4848277T>C	uc002fzq.2	+	11	1435	c.1019T>C	c.(1018-1020)CTG>CCG	p.L340P	RNF167_uc002fzr.2_Missense_Mutation_p.L340P|RNF167_uc002fzs.2_Missense_Mutation_p.L340P|RNF167_uc002fzt.2_Missense_Mutation_p.L340P|RNF167_uc002fzu.2_Missense_Mutation_p.L339P|RNF167_uc002fzv.2_Missense_Mutation_p.L305P|RNF167_uc002fzx.2_Missense_Mutation_p.L304P|RNF167_uc002fzy.2_Missense_Mutation_p.L139P	NM_015528	NP_056343	Q9H6Y7	RN167_HUMAN	ring finger protein 167 precursor	340					negative regulation of cell cycle|protein polyubiquitination	cytoplasm|endomembrane system|integral to membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						GATCCCCCACTGTCCCCTCCC	0.552000													75	284					0	0	0.014410	0	0
MYO19	80179	broad.mit.edu	37	17	34871758	34871758	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr17:34871758T>C	uc010wcy.1	-	8	1482	c.490A>G	c.(490-492)ATT>GTT	p.I164V	MYO19_uc002hmw.2_Missense_Mutation_p.I164V|MYO19_uc010cuu.2_RNA|MYO19_uc010wcz.1_RNA|MYO19_uc010wda.1_Missense_Mutation_p.I30V|MYO19_uc002hmx.2_Missense_Mutation_p.I164V	NM_001163735	NP_001157207	Q96H55	MYO19_HUMAN	myosin XIX isoform 2	164	Myosin head-like.					mitochondrial outer membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)	1		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		CTCTCTGCAATCTTGTGGCTC	0.522000													10	53					0	0	0.013537	0	0
DGKE	8526	broad.mit.edu	37	17	54926211	54926211	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr17:54926211A>G	uc002iur.2	+	6	1223	c.1043A>G	c.(1042-1044)GAT>GGT	p.D348G	DGKE_uc002ius.1_Missense_Mutation_p.D348G	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	348	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					ATTAAACTAGATCGGTAAGTT	0.378000													24	69					0	0	0.018920	0	0
ACER1	125981	broad.mit.edu	37	19	6312191	6312191	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr19:6312191A>G	uc002mel.2	-	3	397	c.319T>C	c.(319-321)TGC>CGC	p.C107R		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	107	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						GGGAAATAGCAGCGGGGCATC	0.587000													4	51					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	2	90193376	90193376	+	RNA	SNP	G	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr2:90193376G>T	uc010fhm.2	+	22		c.2966G>T								Parts of antibodies, mostly variable regions.																		GCAGCCTGCAGCCTGAAGATT	0.468000													11	153					1.03484e-13	2.4287e-13	0.005524	1	0
ALPI	248	broad.mit.edu	37	2	233322816	233322816	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr2:233322816C>T	uc002vst.3	+	8	1042	c.965C>T	c.(964-966)CCC>CTC	p.P322L	ALPI_uc002vsu.3_Missense_Mutation_p.P233L	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	322					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		AGCAGGAACCCCCGCGGCTTC	0.662000													22	68					0	0	0.014323	0	0
PPP1R16B	26051	broad.mit.edu	37	20	37536822	37536822	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr20:37536822G>T	uc002xje.2	+	10	1369	c.1180G>T	c.(1180-1182)GAG>TAG	p.E394*	PPP1R16B_uc010ggc.2_Nonsense_Mutation_p.E352*	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	394					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GACAGACCAAGAGAATAAGGA	0.607000													11	57					1.67772e-17	4.28751e-17	0.010729	1	0
PPP1R16B	26051	broad.mit.edu	37	20	37536828	37536828	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr20:37536828A>G	uc002xje.2	+	10	1375	c.1186A>G	c.(1186-1188)AAG>GAG	p.K396E	PPP1R16B_uc010ggc.2_Missense_Mutation_p.K354E	NM_015568	NP_056383	Q96T49	PP16B_HUMAN	protein phosphatase 1 regulatory inhibitor	396					regulation of filopodium assembly|signal transduction	nucleus|plasma membrane	protein phosphatase binding			upper_aerodigestive_tract(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CCAAGAGAATAAGGACCCTGT	0.607000													9	52					0	0	0.006214	0	0
ADA	100	broad.mit.edu	37	20	43264929	43264929	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr20:43264929C>T	uc002xmj.2	-	2	162	c.34G>A	c.(34-36)GTA>ATA	p.V12I	ADA_uc010ggt.2_RNA	NM_000022	NP_000013	P00813	ADA_HUMAN	adenosine deaminase	12					adenosine catabolic process|cell adhesion|hypoxanthine salvage|inosine biosynthetic process|negative regulation of adenosine receptor signaling pathway|purine nucleotide salvage|purine ribonucleoside monophosphate biosynthetic process|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation	cell junction|cytoplasmic membrane-bounded vesicle lumen|cytosol|external side of plasma membrane|lysosome	adenosine deaminase activity|protein binding|zinc ion binding			pancreas(2)|ovary(1)	3		all_lung(126;1.24e-07)|Lung NSC(126;1.94e-07)|Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)		Adenosine(DB00640)|Cladribine(DB00242)|Dipyridamole(DB00975)|Erythromycin(DB00199)|Fludarabine(DB01073)|Idoxuridine(DB00249)|Nelarabine(DB01280)|Pentostatin(DB00552)|Theophylline(DB00277)|Vidarabine(DB00194)	TGCAGTTCCACCTGCAAGGGG	0.413000									Adenosine_Deaminase_Deficiency				5	19					0	0	0.014758	0	0
MICALL1	85377	broad.mit.edu	37	22	38313744	38313744	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr22:38313744C>T	uc003aui.2	+	4	452	c.368C>T	c.(367-369)GCA>GTA	p.A123V		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	123						cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					AAGGGCCTTGCACCCTGTTCC	0.622000													22	69					0	0	0.004656	0	0
SCAP	22937	broad.mit.edu	37	3	47455522	47455522	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr3:47455522C>A	uc003crh.1	-	23	3917	c.3662G>T	c.(3661-3663)TGT>TTT	p.C1221F	SCAP_uc011baz.1_Missense_Mutation_p.C965F|SCAP_uc003crg.2_Missense_Mutation_p.C828F|uc003cri.2_5'Flank	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	1221	Interaction with SREBF2 (By similarity).|Cytoplasmic (By similarity).|WD 7.				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		AAAGGAGACACAGCCCTGGCC	0.592000													60	83					7.47603e-22	1.95396e-21	0.014410	1	0
PLXNB1	5364	broad.mit.edu	37	3	48459373	48459373	+	Silent	SNP	C	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr3:48459373C>A	uc003csw.2	-	16	3591	c.3321G>T	c.(3319-3321)ACG>ACT	p.T1107T	PLXNB1_uc003csu.2_Silent_p.T924T|PLXNB1_uc003csx.2_Silent_p.T1107T|PLXNB1_uc010hjx.1_RNA|PLXNB1_uc003csy.1_5'Flank	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1107	IPT/TIG 1.|Extracellular (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTCCAGCCACCGTGACCATGC	0.662000													18	59					9.16793e-09	2.10862e-08	0.004990	1	0
NDUFAF3	25915	broad.mit.edu	37	3	49059877	49059877	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr3:49059877A>T	uc003cvq.2	+	2	680	c.176A>T	c.(175-177)TAC>TTC	p.Y59F	DALRD3_uc003cvm.1_5'Flank|DALRD3_uc010hko.1_5'Flank|uc011bcb.1_5'Flank|MIR425_hsa-mir-425|MI0001448_5'Flank|NDUFAF3_uc003cvn.2_Missense_Mutation_p.Y2F|uc003cvo.1_5'Flank|MIR191_hsa-mir-191|MI0000465_5'Flank|NDUFAF3_uc003cvp.2_Missense_Mutation_p.Y2F|NDUFAF3_uc003cvr.2_Missense_Mutation_p.Y2F|NDUFAF3_uc003cvs.2_Missense_Mutation_p.Y2F	NM_199069	NP_951032	Q9BU61	NDUF3_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	59					mitochondrial respiratory chain complex I assembly	mitochondrial inner membrane|nucleus	protein binding				0						CAGGCAATGTACATCGACAGC	0.652000													20	71					0	0	0.010504	0	0
DNAH1	25981	broad.mit.edu	37	3	52432935	52432935	+	Silent	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr3:52432935A>G	uc011bef.1	+	76	12420	c.12159A>G	c.(12157-12159)GTA>GTG	p.V4053V	DNAH1_uc003ddv.2_Silent_p.V911V	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	4118					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		AGGGGCTGGTAGTGATGTCCT	0.552000													9	34					0	0	0.006214	0	0
LOC729375	729375	broad.mit.edu	37	3	129817290	129817290	+	RNA	SNP	A	G	G	rs59443817	by1000genomes	TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr3:129817290A>G	uc003ene.2	-	3		c.1221T>C			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						AAACCCTTTCAAGCAGCGCCT	0.567000													4	16					0	0	0.004482	0	0
HRG	3273	broad.mit.edu	37	3	186383957	186383957	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr3:186383957A>T	uc003fqq.2	+	1	160	c.137A>T	c.(136-138)TAC>TTC	p.Y46F		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	46	Cystatin 1.|Interaction with ATP5A1.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CGGGATGGCTACCTTTTCCAA	0.527000													56	82					0	0	0.014410	0	0
FTMT	94033	broad.mit.edu	37	5	121187826	121187826	+	Silent	SNP	G	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr5:121187826G>T	uc003kss.2	+	1	177	c.168G>T	c.(166-168)CGG>CGT	p.R56R		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	56					cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CCTCCTCCCGGGACCCTACCG	0.751000													6	12					5.9392e-07	1.33923e-06	0.001168	1	0
ASCC3	10973	broad.mit.edu	37	6	101296249	101296249	+	Silent	SNP	T	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr6:101296249T>A	uc003pqk.2	-	4	905	c.576A>T	c.(574-576)ATA>ATT	p.I192I	ASCC3_uc011eai.1_Silent_p.I94I|ASCC3_uc003pql.2_Silent_p.I192I|ASCC3_uc010kcv.2_Silent_p.I192I	NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		AATCTAGGCTTATAGTTTTCT	0.378000													15	48					0	0	0.003163	0	0
SPDYE6	729597	broad.mit.edu	37	7	101988946	101988946	+	Silent	SNP	G	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr7:101988946G>A	uc011kkp.1	-	6	1348	c.927C>T	c.(925-927)CTC>CTT	p.L309L	SPDYE6_uc003uzb.2_Silent_p.L165L	NM_001146210	NP_001139682	P0CI01	SPDE6_HUMAN	speedy homolog E6	309	Arg-rich.										0						GACGCTTACGGAGCAAGGGTA	0.572000													48	639					0	0	0.014410	0	0
ST7	7982	broad.mit.edu	37	7	116869938	116869938	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr7:116869938A>C	uc011knn.1	+	14	1470	c.1465A>C	c.(1465-1467)ACC>CCC	p.T489P	ST7_uc003vio.2_3'UTR|ST7_uc003viq.2_3'UTR|ST7_uc011knm.1_3'UTR|ST7_uc003vir.2_3'UTR	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	Error:Variant_position_missing_in_Q9NRC1_after_alignment						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		CACTCACCTCACCCGCCGCTG	0.507000													11	41					0	0	0.014410	0	0
C8orf41	80185	broad.mit.edu	37	8	33369560	33369560	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr8:33369560A>T	uc003xjl.3	-	1	1097	c.572T>A	c.(571-573)TTC>TAC	p.F191Y	C8orf41_uc003xjk.3_Missense_Mutation_p.F191Y|C8orf41_uc010lvv.2_Missense_Mutation_p.F191Y|C8orf41_uc003xjm.3_Missense_Mutation_p.F191Y|C8orf41_uc003xjn.1_Missense_Mutation_p.F191Y	NM_025115	NP_079391	Q6NXR4	CH041_HUMAN	hypothetical protein LOC80185	191							binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		TCCATGTAGGAATCCTGCCAC	0.502000													75	213					0	0	0.014410	0	0
TERF1	7013	broad.mit.edu	37	8	73921183	73921183	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr8:73921183C>T	uc003xzd.2	+	1	87	c.62C>T	c.(61-63)GCC>GTC	p.A21V	TERF1_uc003xzc.2_RNA|TERF1_uc003xze.2_Missense_Mutation_p.A21V	NM_017489	NP_059523	P54274	TERF1_HUMAN	telomeric repeat binding factor 1 isoform 1	21	Asp/Glu-rich (acidic).				age-dependent telomere shortening|cell division|G2/M transition of mitotic cell cycle|induction of apoptosis|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of telomere maintenance via semi-conservative replication|negative regulation of telomere maintenance via telomerase|positive regulation of microtubule polymerization|positive regulation of mitosis|positive regulation of mitotic cell cycle|protein homooligomerization|regulation of transcription, DNA-dependent|telomere maintenance via telomerase|telomere maintenance via telomerase|telomere maintenance via telomere shortening	chromosome, telomeric region|cytoplasm|nuclear telomere cap complex|nucleoplasm|nucleus|spindle	caspase activator activity|DNA bending activity|double-stranded telomeric DNA binding|identical protein binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|telomerase inhibitor activity|telomeric DNA binding			ovary(1)|lung(1)|skin(1)	3	Breast(64;0.218)		Epithelial(68;0.0984)			GGTAGGGATGCCGACCCTACT	0.637000													8	33					0	0	0.004482	0	0
PSCA	8000	broad.mit.edu	37	8	143762846	143762846	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr8:143762846C>G	uc003ywu.2	+	2	209	c.154C>G	c.(154-156)CGC>GGC	p.R52G	uc003ywt.1_Intron	NM_005672	NP_005663	O43653	PSCA_HUMAN	prostate stem cell antigen preproprotein	43											0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CTGGACCGCGCGCATCCGTGA	0.607000													5	9					0	0	0.001168	0	0
TLN1	7094	broad.mit.edu	37	9	35698169	35698169	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr9:35698169C>G	uc003zxt.2	-	56	7726	c.7372G>C	c.(7372-7374)GCT>CCT	p.A2458P		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2458	I/LWEQ.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TTGCCAGCAGCCTGGGCAGAG	0.512000													12	55					0	0	0.013537	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536638	90536638	+	Missense_Mutation	SNP	T	A	A			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr9:90536638T>A	uc010mqi.2	+	4	1845	c.1816T>A	c.(1816-1818)TGG>AGG	p.W606R	FAM75C1_uc004apq.3_Missense_Mutation_p.W589R	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						GCGTCGATCCTGGCTTGCTGT	0.522000													75	174					0	0	0.014410	0	0
MORC4	79710	broad.mit.edu	37	X	106201626	106201626	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chrX:106201626A>G	uc004emu.3	-	11	1568	c.1325T>C	c.(1324-1326)ATT>ACT	p.I442T	MORC4_uc004emp.3_Intron|MORC4_uc004emv.3_Missense_Mutation_p.I442T|MORC4_uc004emw.3_Missense_Mutation_p.I190T	NM_024657	NP_078933	Q8TE76	MORC4_HUMAN	zinc finger, CW type with coiled-coil domain 2	442	CW-type.						ATP binding|zinc ion binding			ovary(1)	1						GGATGGATCAATCTTCCCAGG	0.423000													29	23					0	0	0.006320	0	0
LMO4	8543	broad.mit.edu	37	1	87805263	87805263	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr1:87805263delT	uc001dmi.2	+	3	1061	c.281delT	c.(280-282)ATTfs	p.I94fs	LMO4_uc001dmj.2_Frame_Shift_Del_p.I94fs	NM_006769	NP_006760	P61968	LMO4_HUMAN	LIM domain only 4	94	LIM zinc-binding 2.				neural tube closure|transcription from RNA polymerase II promoter	transcription factor complex	sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding				0		Lung NSC(277;0.179)		all cancers(265;0.00456)|Epithelial(280;0.0148)|BRCA - Breast invasive adenocarcinoma(282;0.153)		GGACAGTCGATTCCTGCGAGT	0.388													17	42	---	---	---	---					
AGBL2	79841	broad.mit.edu	37	11	47726183	47726183	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr11:47726183delG	uc001ngg.2	-	6	598	c.498delC	c.(496-498)CTCfs	p.L166fs	AGBL2_uc010rhq.1_Frame_Shift_Del_p.L128fs|AGBL2_uc001ngh.1_Frame_Shift_Del_p.L110fs	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	166					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						AAATGGAAAAGAGCTCTTGGG	0.428													24	75	---	---	---	---					
ZNF407	55628	broad.mit.edu	37	18	72344119	72344120	+	Frame_Shift_Ins	INS	-	TA	TA			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr18:72344119_72344120insTA	uc002llw.2	+	1	1201_1202	c.1144_1145insTA	c.(1144-1146)CTAfs	p.L382fs	ZNF407_uc010xfc.1_Frame_Shift_Ins_p.L382fs|ZNF407_uc010dqu.1_Frame_Shift_Ins_p.L382fs|ZNF407_uc002llu.2_Frame_Shift_Ins_p.L381fs	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	382					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		GAGTAGAAAGCTAGACACCTTA	0.431													26	67	---	---	---	---					
PDGFRB	5159	broad.mit.edu	37	5	149515196	149515213	+	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	-	-	rs141870925		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr5:149515196_149515213delCCGTGTCTAGCCCAGTGA	uc003lro.2	-	3	738_755	c.269_286delTCACTGGGCTAGACACGG	c.(268-288)CTCACTGGGCTAGACACGGGA>CGA	p.90_96LTGLDTG>R	PDGFRB_uc010jhd.2_5'UTR|PDGFRB_uc011dcg.1_In_Frame_Del_p.90_96LTGLDTG>R	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	90_96	Extracellular (Potential).|Ig-like C2-type 1.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	AAGTATTCTCCCGTGTCTAGCCCAGTGAGGTTGGTCAG	0.592			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								19	101	---	---	---	---					
NOM1	64434	broad.mit.edu	37	7	156752614	156752614	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	g.chr7:156752614delA	uc003wmy.2	+	4	1393	c.1378delA	c.(1378-1380)AAAfs	p.K460fs	NOM1_uc010lqp.1_5'Flank	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	460	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		AAGCGAAGGGAAAGAGTGTGA	0.443													16	46	---	---	---	---					
