Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													6	37					0	0	0.001984	0	0
MYOM3	127294	broad.mit.edu	37	1	24421403	24421403	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:24421403G>T	uc001bin.3	-	9	1031	c.868C>A	c.(868-870)CTG>ATG	p.L290M	MYOM3_uc001bim.3_Translation_Start_Site|MYOM3_uc001bio.2_Missense_Mutation_p.L290M|MYOM3_uc001bip.1_Translation_Start_Site	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	290	Ig-like C2-type 2.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		AAGCATGACAGGGAGAAGGGT	0.562000													16	28					1.5739e-10	1.83937e-10	0.028581	1	0
ARID1A	8289	broad.mit.edu	37	1	27087947	27087947	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:27087947G>A	uc001bmv.1	+	6	2607	c.2234G>A	c.(2233-2235)AGC>AAC	p.S745N	ARID1A_uc001bmt.1_Missense_Mutation_p.S745N|ARID1A_uc001bmu.1_Missense_Mutation_p.S745N|ARID1A_uc001bmw.1_Missense_Mutation_p.S362N	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	745					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		AACCAATCAAGCATTGCCCAA	0.547000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								7	83					0	0	0.003080	0	0
PEF1	553115	broad.mit.edu	37	1	32100955	32100955	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:32100955C>A	uc001bth.1	-	2	205	c.193G>T	c.(193-195)GGA>TGA	p.G65*	PEF1_uc001bte.1_5'Flank|PEF1_uc001btf.1_5'Flank|PEF1_uc001btg.1_5'UTR|PEF1_uc010ogm.1_Nonsense_Mutation_p.G65*	NM_012392	NP_036524	Q9UBV8	PEF1_HUMAN	penta-EF-hand domain containing 1	65	9 X 9 AA approximate tandem repeat of [AP]-P-G-G-P-Y-G-G-P-P.|5.				response to calcium ion	cytoplasm|membrane	calcium ion binding|protein heterodimerization activity				0		Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)|all_neural(195;0.186)		STAD - Stomach adenocarcinoma(196;0.0546)		TTGGGGTGTCCATAGGGCCCT	0.627000													17	30					4.7546e-09	5.49044e-09	0.028581	1	0
WDR65	149465	broad.mit.edu	37	1	43649478	43649478	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:43649478G>C	uc001cip.1	+	4	812	c.691G>C	c.(691-693)GAG>CAG	p.E231Q	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.E220Q|WDR65_uc001ciq.1_Missense_Mutation_p.E231Q	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	231	WD 3.									skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TCAGCGTTGGGAGACCAGCAT	0.502000													40	120					0	0	0.013114	0	0
DEDD	9191	broad.mit.edu	37	1	161092019	161092019	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:161092019A>C	uc001fxz.2	-	6	1048	c.875T>G	c.(874-876)CTG>CGG	p.L292R	NIT1_uc001fxw.2_Intron|DEDD_uc009wty.2_Missense_Mutation_p.L322R|DEDD_uc001fya.2_Missense_Mutation_p.L292R|DEDD_uc001fyb.2_Missense_Mutation_p.L292R|DEDD_uc010pkb.1_Missense_Mutation_p.L249R|DEDD_uc001fyc.2_Missense_Mutation_p.L132R	NM_001039712	NP_001034801	O75618	DEDD_HUMAN	death effector domain-containing protein	292					apoptosis|induction of apoptosis via death domain receptors|negative regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding				0	all_cancers(52;3.39e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			ATTTACCAGCAGCTTGATGGC	0.498000													29	56					0	0	0.006320	0	0
RGS1	5996	broad.mit.edu	37	1	192547354	192547354	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:192547354G>C	uc001gsi.1	+	4	349	c.283G>C	c.(283-285)GGT>CGT	p.G95R	RGS1_uc010pou.1_Missense_Mutation_p.G95R	NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	95	RGS.				immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				CTTTTTAGCTGGTCAAAATGT	0.343000													35	89					0	0	0.017118	0	0
PLXNA2	5362	broad.mit.edu	37	1	208215581	208215581	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:208215581C>T	uc001hgz.2	-	22	4906	c.4148G>A	c.(4147-4149)CGG>CAG	p.R1383Q		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1383	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		CACGTTGCCCCGGTCGCGCAT	0.582000													27	50					0	0	0.006320	0	0
NUP133	55746	broad.mit.edu	37	1	229631732	229631732	+	Silent	SNP	G	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:229631732G>T	uc001htn.2	-	7	974	c.882C>A	c.(880-882)ATC>ATA	p.I294I		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	294					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				CCCATTTACTGATGTTTGAAC	0.363000													27	39					2.48779e-11	2.94288e-11	0.027356	1	0
PCDH15	65217	broad.mit.edu	37	10	55570392	55570392	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr10:55570392C>T	uc010qhs.1	-	36	4837	c.4442G>A	c.(4441-4443)CGA>CAA	p.R1481Q	PCDH15_uc010qhq.1_Missense_Mutation_p.R1474Q|PCDH15_uc010qhr.1_Missense_Mutation_p.R1469Q|PCDH15_uc010qht.1_Missense_Mutation_p.R1474Q|PCDH15_uc010qhu.1_Missense_Mutation_p.D1493N	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGGTAACAATCGACGGCGACT	0.393000										HNSCC(58;0.16)			46	114					0	0	0.014410	0	0
KIF20B	9585	broad.mit.edu	37	10	91498338	91498338	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr10:91498338A>C	uc001kgs.1	+	20	3812	c.3740A>C	c.(3739-3741)GAA>GCA	p.E1247A	KIF20B_uc001kgr.1_Missense_Mutation_p.E1207A|KIF20B_uc001kgt.1_Missense_Mutation_p.E458A|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1247	Poly-Glu.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						CAATTAAAAGAAGAAGAAGAA	0.279000													17	28					0	0	0.006122	0	0
TRIM8	81603	broad.mit.edu	37	10	104404881	104404881	+	Silent	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr10:104404881C>T	uc001kvz.2	+	1	630	c.507C>T	c.(505-507)TAC>TAT	p.Y169Y		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	169	B box-type 2.					cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		ACTGCTGCTACTACAGCGGCG	0.627000													8	29					0	0	0.004482	0	0
PTPRJ	5795	broad.mit.edu	37	11	48149503	48149503	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr11:48149503C>T	uc001ngp.3	+	7	1620	c.1265C>T	c.(1264-1266)CCC>CTC	p.P422L	PTPRJ_uc001ngo.3_Missense_Mutation_p.P422L	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	422	Extracellular (Potential).|Fibronectin type-III 4.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GCTGTCATCCCCGGACTCCGC	0.552000													40	76					0	0	0.023175	0	0
NAALADL1	10004	broad.mit.edu	37	11	64822081	64822081	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr11:64822081C>T	uc001ocn.2	-	5	749	c.733G>A	c.(733-735)GAG>AAG	p.E245K	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	245	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						GAGCCTCGCTCCACTCCTGAG	0.597000											OREG0032001	type=REGULATORY REGION|TFbs=RELA|Dataset=RELA (p65) ChIP-PET Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with paired-end diTag sequencing (ChIP-PET)	8	24					0	0	0.003080	0	0
IL10RA	3587	broad.mit.edu	37	11	117860196	117860196	+	Missense_Mutation	SNP	C	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr11:117860196C>A	uc001prv.2	+	3	305	c.228C>A	c.(226-228)AGC>AGA	p.S76R	IL10RA_uc010rxl.1_Missense_Mutation_p.S56R|IL10RA_uc010rxm.1_Missense_Mutation_p.S56R|IL10RA_uc010rxn.1_Intron|IL10RA_uc001prw.2_5'UTR	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	76	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		CCAACTGTAGCCAGACCCTGT	0.557000													42	73					1.23713e-20	1.50002e-20	0.014410	1	0
PZP	5858	broad.mit.edu	37	12	9356427	9356427	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr12:9356427T>A	uc001qvl.2	-	2	233	c.204A>T	c.(202-204)GAA>GAT	p.E68D	PZP_uc009zgl.2_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						GGCTCCTGTTTTCCCTGCCAG	0.557000													44	92					0	0	0.014410	0	0
DNAJC22	79962	broad.mit.edu	37	12	49743366	49743366	+	Silent	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr12:49743366T>C	uc001rua.2	+	2	1112	c.711T>C	c.(709-711)CTT>CTC	p.L237L	DNAJC22_uc001rub.2_Silent_p.L237L	NM_024902	NP_079178	Q8N4W6	DJC22_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 22	237	Helical; (Potential).				protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			ovary(1)	1						TTGTCCTCCTTCTGCCTTACC	0.532000													72	155					0	0	0.014410	0	0
GPR18	2841	broad.mit.edu	37	13	99908051	99908051	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr13:99908051G>C	uc001voe.3	-	3	577	c.76C>G	c.(76-78)CTT>GTT	p.L26V	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.L26V	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	26	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	TAGAAGACAAGGGCTGCAATT	0.388000													27	97					0	0	0.024334	0	0
C14orf50	145376	broad.mit.edu	37	14	65032084	65032084	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr14:65032084T>A	uc001xhl.1	+	5	375	c.279T>A	c.(277-279)GAT>GAA	p.D93E		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	93										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		GGTTGACAGATAAAAGACTTG	0.338000													12	22					0	0	0.013537	0	0
EIF2S1	1965	broad.mit.edu	37	14	67848335	67848335	+	Silent	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr14:67848335T>C	uc001xjg.2	+	6	747	c.606T>C	c.(604-606)TAT>TAC	p.Y202Y		NM_004094	NP_004085	P05198	IF2A_HUMAN	eukaryotic translation initiation factor 2,	202						cytosol|eukaryotic translation initiation factor 2 complex|polysome|stress granule	protein binding|ribosome binding|translation initiation factor activity			ovary(1)	1				all cancers(60;0.000683)|OV - Ovarian serous cystadenocarcinoma(108;0.00579)|BRCA - Breast invasive adenocarcinoma(234;0.00937)		GTTATGGTTATGAAGGCATTG	0.343000													42	72					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	107062402	107062402	+	RNA	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr14:107062402G>C	uc010tyt.1	-	131		c.6193C>G								Parts of antibodies, mostly variable regions.												0						TCCTGGGCCCGACTCCTGCAG	0.597000													7	90					0	0	0.010729	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383000													3	18					0	0	0.009096	0	0
NUBP2	10101	broad.mit.edu	37	16	1836594	1836594	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr16:1836594G>C	uc002cmw.3	+	2	162	c.73G>C	c.(73-75)GGC>CGC	p.G25R	NUBP2_uc002cmx.3_5'UTR|NUBP2_uc010brx.2_5'UTR	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	25	ATP (Potential).					microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						AGGAAAGGGGGGCGTTGGGAA	0.657000													24	99					0	0	0.018920	0	0
KIAA0556	23247	broad.mit.edu	37	16	27720066	27720066	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr16:27720066T>C	uc002dow.2	+	13	1454	c.1430T>C	c.(1429-1431)ATC>ACC	p.I477T	KIAA0556_uc002dox.1_Missense_Mutation_p.I385T	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	477										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						AAAGATGCCATCTACGTGACC	0.363000													23	91					0	0	0.021523	0	0
CLDN7	1366	broad.mit.edu	37	17	7163815	7163815	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr17:7163815A>C	uc002gfm.3	-	4	947	c.514T>G	c.(514-516)TCT>GCT	p.S172A	CLDN7_uc010cmc.2_Silent_p.G143G|CLDN7_uc002gfn.3_Missense_Mutation_p.S172A	NM_001307	NP_001298	O95471	CLD7_HUMAN	claudin 7	172	Helical; (Potential).				calcium-independent cell-cell adhesion	integral to membrane|lateral plasma membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						ACTAGGGCAGACCCTGCCCAG	0.572000													7	19					0	0	0.008871	0	0
TOP3A	7156	broad.mit.edu	37	17	18212208	18212208	+	Silent	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr17:18212208A>G	uc002gsx.1	-	2	457	c.228T>C	c.(226-228)CAT>CAC	p.H76H	TOP3A_uc002gsw.1_5'Flank|TOP3A_uc010vxs.1_5'UTR|TOP3A_uc010cqa.1_Intron	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	76	Toprim.				DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						GGCCATACAGATGATAATCAA	0.289000													10	22					0	0	0.020292	0	0
EFTUD2	9343	broad.mit.edu	37	17	42945230	42945230	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr17:42945230G>A	uc002ihn.2	-	13	1355	c.1094C>T	c.(1093-1095)TCC>TTC	p.S365F	EFTUD2_uc010wje.1_Missense_Mutation_p.S330F|EFTUD2_uc010wjf.1_Missense_Mutation_p.S355F	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	365						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				ACTTCTCTGGGAGCTGCTAGT	0.483000													13	10					0	0	0.028581	0	0
WNT3	7473	broad.mit.edu	37	17	44845986	44845986	+	Silent	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr17:44845986C>T	uc002ikv.2	-	4	887	c.768G>A	c.(766-768)GTG>GTA	p.V256V		NM_030753	NP_110380	P56703	WNT3_HUMAN	wingless-type MMTV integration site family,	256					canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|cellular response to retinoic acid|dorsal/ventral axis specification|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic pattern specification|head morphogenesis|hemopoietic stem cell proliferation|inner ear morphogenesis|limb bud formation|mammary gland epithelium development|mesoderm formation|midbrain-hindbrain boundary development|negative regulation of fat cell differentiation|positive regulation of cell proliferation|Spemann organizer formation at the anterior end of the primitive streak|Wnt receptor signaling pathway, calcium modulating pathway	early endosome|extracellular space|late endosome|membrane fraction|membrane raft|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|signal transducer activity			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			GGAGGGTCTCCACCCAGCCTC	0.592000													71	84					0	0	0.014410	0	0
RNF213	57674	broad.mit.edu	37	17	78321576	78321576	+	Silent	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr17:78321576C>T	uc002jyh.1	+	4	3883	c.3660C>T	c.(3658-3660)CGC>CGT	p.R1220R		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CCAACTTCCGCCTGATTGTCA	0.552000													6	74					0	0	0.021553	0	0
DSEL	92126	broad.mit.edu	37	18	65181492	65181492	+	Silent	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr18:65181492A>G	uc002lke.1	-	2	1608	c.384T>C	c.(382-384)AAT>AAC	p.N128N		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	118						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CATAAATTTCATTCCACTTGG	0.403000													34	80					0	0	0.021022	0	0
CFD	1675	broad.mit.edu	37	19	860929	860929	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:860929T>G	uc002lqc.2	+	3	306	c.281T>G	c.(280-282)CTG>CGG	p.L94R	CFD_uc010drv.2_Missense_Mutation_p.L101R	NM_001928	NP_001919	P00746	CFAD_HUMAN	complement factor D preproprotein	94	Peptidase S1.			Missing (in Ref. 7; AA sequence).	complement activation, alternative pathway|platelet activation|platelet degranulation|proteolysis	platelet alpha granule lumen	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCAAGCGCCTGTACGACGTG	0.721000													9	15					0	0	0.004482	0	0
AP3D1	8943	broad.mit.edu	37	19	2151253	2151253	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:2151253G>C	uc002luz.2	-	1	304	c.81C>G	c.(79-81)AAC>AAG	p.N27K	AP3D1_uc002luy.2_Missense_Mutation_p.N27K|AP3D1_uc002lva.2_Missense_Mutation_p.N27K	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	27					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCCTTGTGGTTACGGATGC	0.682000													13	17					0	0	0.024245	0	0
PTGER1	5731	broad.mit.edu	37	19	14584193	14584193	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:14584193G>T	uc002mys.2	-	2	1058	c.940C>A	c.(940-942)CTG>ATG	p.L314M		NM_000955	NP_000946	P34995	PE2R1_HUMAN	prostaglandin E receptor 1, subtype EP1	314	Helical; Name=6; (Potential).					integral to plasma membrane	prostaglandin E receptor activity				0					Alprostadil(DB00770)|Bimatoprost(DB00905)|Bupivacaine(DB00297)|Carboprost Tromethamine(DB00429)	CCCCTCACCAGCATTGGGCTC	0.687000											OREG0025314	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	10					0.000602214	0.000671434	0.014758	1	0
PSMC4	5704	broad.mit.edu	37	19	40478461	40478461	+	Silent	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:40478461A>G	uc002omq.2	+	3	358	c.321A>G	c.(319-321)ACA>ACG	p.T107T	PSMC4_uc002omr.2_Silent_p.T76T	NM_006503	NP_006494	P43686	PRS6B_HUMAN	proteasome 26S ATPase subunit 4 isoform 1	107					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			ovary(1)	1	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GCTCTACCACAGGTGTGCTAA	0.512000													10	31					0	0	0.008291	0	0
MEGF8	1954	broad.mit.edu	37	19	42861598	42861598	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:42861598C>G	uc002otl.3	+	27	5307	c.4672C>G	c.(4672-4674)CTT>GTT	p.L1558V	MEGF8_uc002otm.3_Missense_Mutation_p.L1166V	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1625	Extracellular (Potential).|Kelch 8.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TGGTCACACCCTTACTGCCCG	0.652000													35	96					0	0	0.027894	0	0
ZNF8	7554	broad.mit.edu	37	19	58805588	58805588	+	Silent	SNP	G	A	A	rs35832841	byFrequency	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:58805588G>A	uc002qry.1	+	4	544	c.414G>A	c.(412-414)GGG>GGA	p.G138G	ZNF8_uc002qrz.2_RNA	NM_021089	NP_066575	P17098	ZNF8_HUMAN	zinc finger protein 8	138					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;6.46e-05)|Lung NSC(17;0.0233)|all_neural(62;0.0381)|all_epithelial(17;0.0427)|all_lung(17;0.057)|Ovarian(87;0.17)|Colorectal(82;0.227)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.00619)		CCACGTTAGGGAAAGACAGGG	0.527000													9	24					0	0	0.004482	0	0
LPIN1	23175	broad.mit.edu	37	2	11913751	11913751	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr2:11913751T>C	uc010yjn.1	+	6	876	c.602T>C	c.(601-603)CTT>CCT	p.L201P	LPIN1_uc010yjm.1_Missense_Mutation_p.L250P|LPIN1_uc002rbt.2_Missense_Mutation_p.L201P|LPIN1_uc002rbs.2_Missense_Mutation_p.L201P	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	201					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		TCCAGAACTCTTCCTAATGAT	0.358000													29	67					0	0	0.010818	0	0
THSD7B	80731	broad.mit.edu	37	2	137928319	137928319	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr2:137928319A>G	uc002tva.1	+	6	1441	c.1441A>G	c.(1441-1443)ACG>GCG	p.T481A	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.T371A	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGGATTTAGAACGAGGCAGCG	0.453000													9	73					0	0	0.008291	0	0
IFIH1	64135	broad.mit.edu	37	2	163167397	163167397	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr2:163167397A>G	uc002uce.2	-	2	722	c.500T>C	c.(499-501)CTA>CCA	p.L167P	IFIH1_uc002ucf.2_Missense_Mutation_p.L167P	NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	167	CARD 2.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						CCTTTTTAGTAGCTCTCTTAC	0.358000													12	34					0	0	0.020292	0	0
OBFC2A	64859	broad.mit.edu	37	2	192543405	192543405	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr2:192543405A>C	uc002usx.2	+	1	545	c.65A>C	c.(64-66)AAT>ACT	p.N22T	OBFC2A_uc002usw.2_Intron|OBFC2A_uc002usy.2_RNA|OBFC2A_uc002usz.2_RNA|OBFC2A_uc002uta.2_5'Flank	NM_001031716	NP_001026886	Q96AH0	SOSB2_HUMAN	oligonucleotide/oligosaccharide-binding fold	22					double-strand break repair via homologous recombination|G2/M transition checkpoint|response to ionizing radiation	SOSS complex	single-stranded DNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.061)|Epithelial(96;0.244)			AAAAACTTAAATGTCGTCTTT	0.483000													26	53					0	0	0.024334	0	0
SF3B1	23451	broad.mit.edu	37	2	198274598	198274598	+	Missense_Mutation	SNP	G	T	T	rs1044635		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr2:198274598G>T	uc002uue.2	-	7	848	c.800C>A	c.(799-801)ACT>AAT	p.T267N		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	267	Interaction with PPP1R8.			T->A: No effect on interaction with PPP1R8.	nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TCGTCCAGGAGTAGCAGCTCC	0.562000													69	134					8.83742e-36	1.0851e-35	0.014410	1	0
PMEPA1	56937	broad.mit.edu	37	20	56227616	56227616	+	Silent	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr20:56227616C>T	uc002xyq.2	-	4	750	c.357G>A	c.(355-357)CTG>CTA	p.L119L	PMEPA1_uc002xyr.2_Silent_p.L69L|PMEPA1_uc002xys.2_Silent_p.L84L|PMEPA1_uc002xyt.2_Silent_p.L69L	NM_020182	NP_064567	Q969W9	PMEPA_HUMAN	transmembrane prostate androgen-induced protein	119	Cytoplasmic (Potential).				androgen receptor signaling pathway	integral to membrane|plasma membrane	WW domain binding			pancreas(1)	1						GCGGCACGGCCAGGCGGTCGG	0.692000													3	10					0	0	0.004672	0	0
COL9A3	1299	broad.mit.edu	37	20	61468580	61468580	+	Silent	SNP	C	T	T	rs144216578		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr20:61468580C>T	uc002ydm.2	+	30	1752	c.1749C>T	c.(1747-1749)CGC>CGT	p.R583R	COL9A3_uc002ydn.2_Silent_p.R77R	NM_001853	NP_001844	Q14050	CO9A3_HUMAN	alpha 3 type IX collagen precursor	583	Triple-helical region 2 (COL2).				axon guidance	collagen type IX					0	Breast(26;5.68e-08)					CTGGATACCGCGGTCCCACTG	0.667000													22	52					0	0	0.018920	0	0
NRIP1	8204	broad.mit.edu	37	21	16337670	16337670	+	Silent	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr21:16337670A>G	uc002yjx.2	-	4	3442	c.2844T>C	c.(2842-2844)GAT>GAC	p.D948D		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	948	CTBP-binding.			DL->AA: Abolishes CTBP binding but retains transcriptional repressor activity.	androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		GCGGGGACAAATCTCGCACAC	0.428000													37	95					0	0	0.025465	0	0
NCAM2	4685	broad.mit.edu	37	21	22658662	22658662	+	Silent	SNP	A	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr21:22658662A>T	uc002yld.1	+	4	660	c.411A>T	c.(409-411)CGA>CGT	p.R137R	NCAM2_uc011acb.1_Intron|NCAM2_uc011acc.1_Silent_p.R162R	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	137	Ig-like C2-type 2.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TGGTTTGCCGAGTTAGCAGTT	0.383000													13	35					0	0	0.020292	0	0
CECR2	27443	broad.mit.edu	37	22	18021911	18021911	+	Silent	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr22:18021911C>T	uc010gqw.1	+	15	2139	c.2013C>T	c.(2011-2013)TGC>TGT	p.C671C	CECR2_uc010gqv.1_Silent_p.C530C|CECR2_uc002zml.2_Silent_p.C530C	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	713					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		AGCAAATGTGCGGGGGGCTGA	0.557000													8	18					0	0	0.003080	0	0
RHBDD3	25807	broad.mit.edu	37	22	29656765	29656765	+	Silent	SNP	C	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr22:29656765C>A	uc003aeq.1	-	5	993	c.621G>T	c.(619-621)GGG>GGT	p.G207G	RHBDD3_uc003aer.1_RNA	NM_012265	NP_036397	Q9Y3P4	RHBD3_HUMAN	rhomboid domain containing 3	207						integral to membrane	serine-type endopeptidase activity			ovary(1)	1						GGGGCCAGCACCCCGCCAAGG	0.692000													9	16					0.00448238	0.00488529	0.004482	1	0
MTMR14	64419	broad.mit.edu	37	3	9691346	9691346	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr3:9691346C>G	uc003brz.2	+	1	203	c.79C>G	c.(79-81)CTG>GTG	p.L27V	MTMR14_uc003bsa.2_Missense_Mutation_p.L27V|MTMR14_uc003bsb.2_Missense_Mutation_p.L27V|MTMR14_uc011ath.1_RNA|MTMR14_uc010hcl.2_Missense_Mutation_p.L27V	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	27						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					GCCTCAGGAGCTGGGGCTTGG	0.721000													3	11					0	0	0.009096	0	0
DPPA2	151871	broad.mit.edu	37	3	109023471	109023471	+	Silent	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr3:109023471T>C	uc003dxo.2	-	7	952	c.705A>G	c.(703-705)ACA>ACG	p.T235T		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	235						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						CCCAACCCTTTGTGTCTGCCG	0.502000													4	98					0	0	0.009096	0	0
DDX60	55601	broad.mit.edu	37	4	169172121	169172121	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr4:169172121C>T	uc003irp.2	-	28	4134	c.3842G>A	c.(3841-3843)AGA>AAA	p.R1281K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1281	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ATATCCTTTTCTAAAGAGGAT	0.338000													14	40					0	0	0.024245	0	0
PALLD	23022	broad.mit.edu	37	4	169433375	169433375	+	Silent	SNP	G	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr4:169433375G>A	uc011cjx.1	+	2	931	c.720G>A	c.(718-720)AGG>AGA	p.R240R	PALLD_uc003iru.2_Silent_p.R240R	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	240					cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		CTGGGGCCAGGCATTGCTACC	0.597000									Pancreatic_Cancer_Familial_Clustering_of				4	82					0	0	0.014758	0	0
WWC2	80014	broad.mit.edu	37	4	184166688	184166688	+	Missense_Mutation	SNP	A	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr4:184166688A>C	uc010irx.2	+	6	904	c.722A>C	c.(721-723)GAT>GCT	p.D241A	WWC2_uc003ivk.3_Missense_Mutation_p.D36A|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Intron	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	241	Potential.									ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		GAAAAACAAGATCTGATGCAG	0.433000													10	30					0	0	0.013537	0	0
PDZD2	23037	broad.mit.edu	37	5	32074625	32074625	+	Missense_Mutation	SNP	G	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr5:32074625G>T	uc003jhl.2	+	18	3801	c.3413G>T	c.(3412-3414)AGT>ATT	p.S1138I	PDZD2_uc003jhm.2_Missense_Mutation_p.S1138I|PDZD2_uc011cnx.1_Missense_Mutation_p.S964I	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1138					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GCCAAGCCCAGTGGCTCACAG	0.587000													17	30					0.006122	0.00659816	0.006122	1	0
SEPP1	6414	broad.mit.edu	37	5	42807146	42807146	+	RNA	SNP	T	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr5:42807146T>A	uc011cps.1	-	4		c.456A>T			SEPP1_uc011cpt.1_RNA|SEPP1_uc011cpu.1_RNA|SEPP1_uc011cpv.1_RNA|SEPP1_uc003jna.2_RNA			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						CCTTGATGATTAACAACAATA	0.284000													12	44					0	0	0.013537	0	0
FCHO2	115548	broad.mit.edu	37	5	72383545	72383545	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr5:72383545A>G	uc003kcl.2	+	25	2491	c.2375A>G	c.(2374-2376)TAT>TGT	p.Y792C	FCHO2_uc011csl.1_Missense_Mutation_p.Y759C|FCHO2_uc010izb.2_Missense_Mutation_p.Y220C|FCHO2_uc011csn.1_Missense_Mutation_p.Y220C	NM_138782	NP_620137	Q0JRZ9	FCHO2_HUMAN	FCH domain only 2 isoform a	792										ovary(1)	1		Lung NSC(167;0.0465)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;4.6e-53)		GGCACTGGCTATAGGCTTTCC	0.398000													45	127					0	0	0.014410	0	0
VARS2	57176	broad.mit.edu	37	6	30888201	30888201	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:30888201T>C	uc003nsc.1	+	13	2017	c.1385T>C	c.(1384-1386)CTG>CCG	p.L462P	VARS2_uc011dmx.1_Missense_Mutation_p.L462P|VARS2_uc011dmy.1_Missense_Mutation_p.L322P|VARS2_uc011dmz.1_Missense_Mutation_p.L492P|VARS2_uc011dna.1_Missense_Mutation_p.L460P|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_5'UTR|VARS2_uc010jsg.1_5'UTR|VARS2_uc010jsh.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	462					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						CCCATGGTACTGCCCATCTGC	0.498000													16	35					0	0	0.006122	0	0
ZNF76	7629	broad.mit.edu	37	6	35260658	35260658	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:35260658C>T	uc003oki.1	+	11	1371	c.1166C>T	c.(1165-1167)GCC>GTC	p.A389V	ZNF76_uc003okj.1_Missense_Mutation_p.A389V	NM_003427	NP_003418	P36508	ZNF76_HUMAN	zinc finger protein 76 (expressed in testis)	389					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTCTCCCAGCCGCCTCTGCA	0.622000													35	85					0	0	0.007835	0	0
DNAH8	1769	broad.mit.edu	37	6	38709565	38709565	+	Missense_Mutation	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:38709565A>G	uc003ooe.1	+	6	1144	c.544A>G	c.(544-546)ATG>GTG	p.M182V		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTGGAAACGCATGTCAGCCAA	0.398000													22	45					0	0	0.021523	0	0
RUNX2	860	broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:45390466A>G	uc011dvx.1	+	3	405	c.195A>G	c.(193-195)CAA>CAG	p.Q65Q	RUNX2_uc011dvy.1_Silent_p.Q65Q|RUNX2_uc003oxt.2_Silent_p.Q51Q	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	65	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						agcagcagcaacagcagcagc	0.274000													3	27					0	0	0.004672	0	0
BAI3	577	broad.mit.edu	37	6	69943243	69943243	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:69943243C>T	uc003pev.3	+	18	2990	c.2542C>T	c.(2542-2544)CAT>TAT	p.H848Y	BAI3_uc010kak.2_Missense_Mutation_p.H848Y|BAI3_uc011dxx.1_Missense_Mutation_p.H54Y|BAI3_uc003pex.1_5'Flank	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	848	GPS.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CGATGCATCCCATACGAAATG	0.473000													63	138					0	0	0.014410	0	0
RFX6	222546	broad.mit.edu	37	6	117245902	117245902	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:117245902T>A	uc003pxm.2	+	15	1689	c.1626T>A	c.(1624-1626)AAT>AAA	p.N542K		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	542					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						AGTTTAATAATGACAAAGAGC	0.338000													18	59					0	0	0.006122	0	0
AEBP1	165	broad.mit.edu	37	7	44152208	44152208	+	Missense_Mutation	SNP	G	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr7:44152208G>C	uc003tkb.2	+	18	2574	c.2269G>C	c.(2269-2271)GTG>CTG	p.V757L	AEBP1_uc003tkc.3_Missense_Mutation_p.V332L|AEBP1_uc003tkd.2_Missense_Mutation_p.V7L	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	757	Interaction with PTEN (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GAACCCCTTCGTGCTGGGAGC	0.642000													33	85					0	0	0.015359	0	0
OGDH	4967	broad.mit.edu	37	7	44714122	44714122	+	Missense_Mutation	SNP	G	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr7:44714122G>A	uc003tln.2	+	7	1010	c.901G>A	c.(901-903)GGC>AGC	p.G301S	OGDH_uc003tlm.2_Missense_Mutation_p.G301S|OGDH_uc011kbx.1_Missense_Mutation_p.G297S|OGDH_uc011kby.1_Missense_Mutation_p.G151S|OGDH_uc003tlp.2_Missense_Mutation_p.G312S|OGDH_uc011kbz.1_Missense_Mutation_p.G96S|OGDH_uc003tlo.1_Missense_Mutation_p.G134S	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	301					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	TAGTGAGAATGGCGTGGACTA	0.572000													47	61					0	0	0.014410	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617692	54617692	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr7:54617692C>T	uc010kzf.2	+	4	868	c.463C>T	c.(463-465)CGC>TGC	p.R155C	VSTM2A_uc010kze.2_Missense_Mutation_p.R155C|VSTM2A_uc003tqc.3_Missense_Mutation_p.R155C	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	155						extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			CAGCCATGCCCGCAGAATGCA	0.577000													12	15					0	0	0.010729	0	0
FEZF1	389549	broad.mit.edu	37	7	121944146	121944146	+	Missense_Mutation	SNP	T	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr7:121944146T>G	uc003vkd.2	-	1	420	c.346A>C	c.(346-348)AGC>CGC	p.S116R	FEZF1_uc003vkc.2_Missense_Mutation_p.S116R|uc010lko.1_RNA|uc003vkf.1_5'Flank	NM_001024613	NP_001019784	A0PJY2	FEZF1_HUMAN	FEZ family zinc finger 1 isoform 1	116					cell differentiation|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)	3						TCGCTGCAGCTGAATGCGGGA	0.602000													3	9					0	0	0.004672	0	0
LUC7L2	51631	broad.mit.edu	37	7	139107032	139107032	+	Missense_Mutation	SNP	T	A	A			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr7:139107032T>A	uc003vux.2	+	10	1499	c.1125T>A	c.(1123-1125)AAT>AAA	p.N375K	LUC7L2_uc011kqs.1_Missense_Mutation_p.N372K|LUC7L2_uc011kqt.1_Missense_Mutation_p.N441K|LUC7L2_uc003vuy.2_Missense_Mutation_p.N374K|LUC7L2_uc003vva.2_Missense_Mutation_p.N322K	NM_016019	NP_057103	Q9Y383	LC7L2_HUMAN	LUC7-like 2	375	Arg/Ser-rich.						enzyme binding|metal ion binding				0	Melanoma(164;0.242)					AGAGTGCTAATGGCAGATCAG	0.478000													85	82					0	0	0.014410	0	0
PRSS55	203074	broad.mit.edu	37	8	10390473	10390473	+	Nonsense_Mutation	SNP	G	A	A	rs150767306		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr8:10390473G>A	uc003wta.2	+	4	671	c.656G>A	c.(655-657)TGG>TAG	p.W219*	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	219	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ATCATGGACTGGGAGGAGTGT	0.473000													30	51					0	0	0.009535	0	0
C8orf80	389643	broad.mit.edu	37	8	27888815	27888815	+	Missense_Mutation	SNP	C	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr8:27888815C>G	uc003xgm.3	-	15	1996	c.1853G>C	c.(1852-1854)GGG>GCG	p.G618A		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	618						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		ACTTCTTATCCCAATTTCTGT	0.468000													40	122					0	0	0.011902	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20194424	20194424	+	Missense_Mutation	SNP	C	T	T			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chrX:20194424C>T	uc004czu.2	-	13	1046	c.1046G>A	c.(1045-1047)GGC>GAC	p.G349D	RPS6KA3_uc011mjk.1_Missense_Mutation_p.G320D|RPS6KA3_uc004czv.2_Missense_Mutation_p.G337D|RPS6KA3_uc011mjl.1_Missense_Mutation_p.G321D|RPS6KA3_uc011mjm.1_Missense_Mutation_p.G321D	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	349	AGC-kinase C-terminal.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						TTCAGGCCTGCCCGTTGCAGG	0.328000													3	33					0	0	0.014758	0	0
MAP7D3	79649	broad.mit.edu	37	X	135314169	135314169	+	Missense_Mutation	SNP	T	C	C			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chrX:135314169T>C	uc004ezt.2	-	8	1038	c.947A>G	c.(946-948)AAC>AGC	p.N316S	MAP7D3_uc004ezs.2_Missense_Mutation_p.N280S|MAP7D3_uc011mwc.1_Missense_Mutation_p.N298S|MAP7D3_uc010nsa.1_Missense_Mutation_p.N274S	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	316						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					CATGCTTGTGTTGCAGAATAC	0.567000													18	143					0	0	0.012319	0	0
ELF3	1999	broad.mit.edu	37	1	201980419	201980420	+	Frame_Shift_Ins	INS	-	G	G			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr1:201980419_201980420insG	uc001gxg.3	+	1	3347_3348	c.155_156insG	c.(154-156)GAGfs	p.E52fs	ELF3_uc001gxi.3_Frame_Shift_Ins_p.E52fs|ELF3_uc001gxh.3_Frame_Shift_Ins_p.E52fs	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	52	PNT.				epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						ATGTCATTGGAGGGTACAGGTG	0.609													11	130	---	---	---	---					
DDX10	1662	broad.mit.edu	37	11	108788635	108788637	+	In_Frame_Del	DEL	TGA	-	-			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr11:108788635_108788637delTGA	uc001pkm.2	+	17	2405_2407	c.2340_2342delTGA	c.(2338-2343)AGTGAT>AGT	p.D788del	DDX10_uc001pkl.1_In_Frame_Del_p.D788del	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	788							ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		TGGATTGGAGtgatgatgatgat	0.310			T	NUP98	AML*								7	76	---	---	---	---					
CD3EAP	10849	broad.mit.edu	37	19	45911859	45911861	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr19:45911859_45911861delGAA	uc002pbq.1	+	3	1121_1123	c.633_635delGAA	c.(631-636)CGGAAG>CGG	p.K217del	PPP1R13L_uc002pbo.2_5'Flank|PPP1R13L_uc002pbp.2_5'Flank|CD3EAP_uc002pbr.1_In_Frame_Del_p.K219del	NM_012099	NP_036231	O15446	RPA34_HUMAN	CD3E antigen, epsilon polypeptide associated	217	Poly-Lys.				rRNA transcription|transmembrane receptor protein tyrosine kinase signaling pathway	chromosome|RNA polymerase I transcription factor complex	DNA-directed RNA polymerase activity			large_intestine(2)|ovary(2)	4		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0251)		TGGATGTGCGGAAGAAGAAGAAG	0.581													8	149	---	---	---	---					
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	-	-	rs112040677		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr2:131129929_131129934delGACGGG	uc002trc.2	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)CAGACGGGG>CAG	p.TG378del	PTPN18_uc002trd.2_In_Frame_Del_p.TG357del|PTPN18_uc002trb.2_In_Frame_Del_p.TG271del|PTPN18_uc002tre.2_In_Frame_Del_p.TG29del	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	378_379				Missing (in Ref. 1; CAA56105).		cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.568													4	6	---	---	---	---					
CHD6	84181	broad.mit.edu	37	20	40033403	40033405	+	In_Frame_Del	DEL	TCT	-	-	rs146425509		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr20:40033403_40033405delTCT	uc002xka.1	-	37	8154_8156	c.7976_7978delAGA	c.(7975-7980)AAGACA>ACA	p.K2659del	CHD6_uc002xjz.1_In_Frame_Del_p.K196del	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2659	Poly-Lys.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TCCCCCTTTGTCTTCTTCTTCTT	0.586													12	150	---	---	---	---					
ZNF717	100131827	broad.mit.edu	37	3	75790810	75790811	+	Frame_Shift_Ins	INS	-	T	T	rs76346895		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr3:75790810_75790811insT	uc011bgi.1	-	3	457_458	c.134_135insA	c.(133-135)ACCfs	p.T45fs	ZNF717_uc003dpw.3_RNA	NM_001128223	NP_001121695	C9JSV9	C9JSV9_HUMAN	zinc finger protein 717	45					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						CCCTGTACAGGGTCCTCTGAGC	0.510													5	5	---	---	---	---					
UBR2	23304	broad.mit.edu	37	6	42610219	42610220	+	Splice_Site	INS	-	GTAAT	GTAAT			TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	g.chr6:42610219_42610220insGTAAT	uc011dur.1	+	18	2097	c.2097_splice	c.e18+1	p.Q699_splice	UBR2_uc011dus.1_Splice_Site_p.Q344_splice|UBR2_uc010jxv.1_Splice_Site_p.Q203_splice|UBR2_uc003osh.2_Splice_Site	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin						cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TAATGCTTCAGGTAATGAATTA	0.267													7	30	---	---	---	---					
