Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
INADL	10207	broad.mit.edu	37	1	62550317	62550317	+	Silent	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr1:62550317C>T	uc001dab.2	+	33	4488	c.4374C>T	c.(4372-4374)CCC>CCT	p.P1458P	INADL_uc009waf.1_Silent_p.P1458P|INADL_uc001daa.2_Silent_p.P1458P|INADL_uc001dad.3_Silent_p.P1155P|INADL_uc001dac.2_RNA|INADL_uc010oot.1_Silent_p.P242P|INADL_uc009wag.2_Silent_p.P242P|INADL_uc010oou.1_Silent_p.P131P	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1458	PDZ 8.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AAGACACACCCTTGGTAAGTT	0.448													27	68					0	0	0.004656	0	0
LY9	4063	broad.mit.edu	37	1	160783509	160783509	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr1:160783509G>A	uc001fwu.2	+	3	588	c.538G>A	c.(538-540)GTG>ATG	p.V180M	LY9_uc010pjs.1_Missense_Mutation_p.V180M|LY9_uc001fwv.2_Missense_Mutation_p.V180M|LY9_uc001fww.2_Missense_Mutation_p.V180M|LY9_uc001fwx.2_Missense_Mutation_p.V180M|LY9_uc001fwy.1_Missense_Mutation_p.V82M|LY9_uc001fwz.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	180	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AATGTGCTCCGTGAAGGGGGC	0.537													5	117					0	0	0.000602	0	0
LRRC52	440699	broad.mit.edu	37	1	165514059	165514059	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr1:165514059C>G	uc001gde.2	+	1	582	c.526C>G	c.(526-528)CTG>GTG	p.L176V	LOC400794_uc001gdc.2_Intron|LOC400794_uc001gdd.2_Intron|LOC400794_uc009wvd.2_Intron	NM_001005214	NP_001005214	Q8N7C0	LRC52_HUMAN	leucine rich repeat containing 52 precursor	176	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)					CCTCACTACTCTGGAGACCCT	0.512													46	124					0	0	0.011902	0	0
C1orf107	27042	broad.mit.edu	37	1	210015618	210015618	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr1:210015618G>A	uc001hhr.1	+	9	1570	c.1494G>A	c.(1492-1494)ATG>ATA	p.M498I	C1orf107_uc009xcu.1_Missense_Mutation_p.M213I	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	498					multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		AGCATTTGATGAATCACATGA	0.408													14	42					0	0	0.002450	0	0
LARP4B	23185	broad.mit.edu	37	10	858887	858887	+	Silent	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:858887A>G	uc001ifs.1	-	17	2237	c.2196T>C	c.(2194-2196)ACT>ACC	p.T732T		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	732							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						ACTTGGGGGGAGTGCTCTGCT	0.547													24	62					0	0	0.004656	0	0
PITRM1	10531	broad.mit.edu	37	10	3191832	3191832	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:3191832A>C	uc010qah.1	-	15	1788	c.1756T>G	c.(1756-1758)TTC>GTC	p.F586V	PITRM1_uc001igr.1_Missense_Mutation_p.F618V|PITRM1_uc001igt.1_Missense_Mutation_p.F618V|PITRM1_uc009xhv.1_Missense_Mutation_p.F183V|PITRM1_uc001igu.1_Missense_Mutation_p.F610V|PITRM1_uc010qai.1_Missense_Mutation_p.F589V			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	586					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						ACGCTGCAGAAGAGGGGCACA	0.517													69	169					0	0	0.003610	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43651227	43651227	+	Silent	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:43651227A>G	uc001jan.2	+	2	965	c.630A>G	c.(628-630)AAA>AAG	p.K210K	CSGALNACT2_uc001jam.1_Silent_p.K210K	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	210	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						TTGGAGAGAAACTGATATTTA	0.363													14	45					0	0	0.003163	0	0
TYSND1	219743	broad.mit.edu	37	10	71899794	71899794	+	Silent	SNP	G	A	A	rs61748802	byFrequency	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:71899794G>A	uc001jqr.2	-	4	1741	c.1587C>T	c.(1585-1587)TAC>TAT	p.Y529Y	TYSND1_uc001jqq.2_RNA|TYSND1_uc001jqs.2_3'UTR|TYSND1_uc001jqt.2_RNA	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	529	Serine protease.				proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						GGGTCTGGCTGTACTGCTGCA	0.652													39	55					0	0	0.007835	0	0
POLR3A	11128	broad.mit.edu	37	10	79741971	79741971	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:79741971C>G	uc001jzn.2	-	28	3794	c.3700G>C	c.(3700-3702)GCA>CCA	p.A1234P		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	1234					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			GCCATGACTGCCCGCAGGTTA	0.567													31	67					0	0	0.008361	0	0
KIAA1598	57698	broad.mit.edu	37	10	118689489	118689489	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:118689489C>T	uc009xyw.2	-	10	1381	c.883G>A	c.(883-885)GAA>AAA	p.E295K	KIAA1598_uc001lcz.3_Missense_Mutation_p.E295K|KIAA1598_uc010qso.1_Missense_Mutation_p.E235K|KIAA1598_uc010qsp.1_Missense_Mutation_p.E295K|KIAA1598_uc010qsq.1_Missense_Mutation_p.E235K|KIAA1598_uc001lcy.3_Missense_Mutation_p.E265K	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	295	Potential.				axon guidance	axon					0				all cancers(201;0.00494)		GTTTCATTTTCTAGTTGCTCT	0.308													27	91					0	0	0.010818	0	0
KIAA1598	57698	broad.mit.edu	37	10	118689491	118689491	+	Missense_Mutation	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:118689491A>G	uc009xyw.2	-	10	1379	c.881T>C	c.(880-882)CTA>CCA	p.L294P	KIAA1598_uc001lcz.3_Missense_Mutation_p.L294P|KIAA1598_uc010qso.1_Missense_Mutation_p.L234P|KIAA1598_uc010qsp.1_Missense_Mutation_p.L294P|KIAA1598_uc010qsq.1_Missense_Mutation_p.L234P|KIAA1598_uc001lcy.3_Missense_Mutation_p.L264P	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	294	Potential.				axon guidance	axon					0				all cancers(201;0.00494)		TTCATTTTCTAGTTGCTCTTC	0.303													27	89					0	0	0.009535	0	0
GLRX3	10539	broad.mit.edu	37	10	131964822	131964822	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr10:131964822G>T	uc001lkm.1	+	5	552	c.530G>T	c.(529-531)AGC>ATC	p.S177I	GLRX3_uc001lkn.1_Missense_Mutation_p.S177I|GLRX3_uc001lko.2_RNA	NM_006541	NP_006532	O76003	GLRX3_HUMAN	glutaredoxin 3	177	Glutaredoxin 1.				cell redox homeostasis|negative regulation of cardiac muscle hypertrophy|regulation of the force of heart contraction	cell cortex	electron carrier activity|iron-sulfur cluster binding|metal ion binding|protein disulfide oxidoreductase activity				0		all_cancers(35;9.59e-07)|all_epithelial(44;1.48e-06)|Lung NSC(174;0.00566)|all_lung(145;0.00949)|Colorectal(57;0.142)|all_neural(114;0.16)|Breast(234;0.173)|Glioma(114;0.222)		OV - Ovarian serous cystadenocarcinoma(35;0.00218)		ATTCAGTTTAGCAGTTTTGAT	0.393													27	84					9.39395e-14	1.07029e-13	0.006320	1	0
LRRC56	115399	broad.mit.edu	37	11	552211	552211	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:552211C>T	uc010qvz.1	+	12	1665	c.1160C>T	c.(1159-1161)GCC>GTC	p.A387V		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	387										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGCTCAGGGCCTGGAGGGAA	0.657													23	41					0	0	0.002780	0	0
OR51A7	119687	broad.mit.edu	37	11	4929158	4929158	+	Silent	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:4929158C>T	uc010qyq.1	+	1	559	c.559C>T	c.(559-561)CTG>TTG	p.L187L		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TACCATGAAGCTGGCCTGCTC	0.398													40	92					0	0	0.011902	0	0
TPP1	1200	broad.mit.edu	37	11	6640045	6640045	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:6640045A>C	uc001mel.1	-	3	252	c.191T>G	c.(190-192)CTG>CGG	p.L64R	TPP1_uc001mek.1_5'UTR|TPP1_uc010rar.1_Missense_Mutation_p.L64R	NM_000391	NP_000382	O14773	TPP1_HUMAN	tripeptidyl-peptidase I preproprotein	64					bone resorption|cell death|lipid metabolic process|lysosome organization|nervous system development|neuromuscular process controlling balance|peptide catabolic process|protein catabolic process|proteolysis	lysosome|melanosome|soluble fraction	metal ion binding|peptide binding|protein binding|serine-type endopeptidase activity|tripeptidyl-peptidase activity				0		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;3.45e-09)|BRCA - Breast invasive adenocarcinoma(625;0.131)		AGCCTGCACCAGCTCCGAGAG	0.622													22	52					0	0	0.002299	0	0
F2	2147	broad.mit.edu	37	11	46740795	46740795	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:46740795G>A	uc001ndf.3	+	1	53	c.10G>A	c.(10-12)GTC>ATC	p.V4I	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	4					activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	TATGGCGCACGTCCGAGGCTT	0.577													12	26					0	0	0.010729	0	0
LRFN4	78999	broad.mit.edu	37	11	66627368	66627368	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:66627368T>A	uc001ojr.2	+	2	1950	c.1610T>A	c.(1609-1611)TTG>TAG	p.L537*	PC_uc001ojo.1_Intron|PC_uc001ojp.1_Intron|PC_uc001ojn.1_Intron|LRFN4_uc001ojs.2_Intron	NM_024036	NP_076941	Q6PJG9	LRFN4_HUMAN	leucine rich repeat and fibronectin type III	537	Helical; (Potential).					integral to membrane					0						ACTGTGGCCTTGCTGGTTCGG	0.711													10	12					0	0	0.008291	0	0
PCF11	51585	broad.mit.edu	37	11	82877690	82877690	+	Missense_Mutation	SNP	A	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:82877690A>T	uc001ozx.3	+	5	2096	c.1751A>T	c.(1750-1752)AAT>ATT	p.N584I	PCF11_uc010rsu.1_Missense_Mutation_p.N584I	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	584					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						CCAAAGGAGAATGTAGAAAAC	0.393													13	53					0	0	0.001368	0	0
PCF11	51585	broad.mit.edu	37	11	82878314	82878314	+	Missense_Mutation	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:82878314G>C	uc001ozx.3	+	6	2310	c.1965G>C	c.(1963-1965)GAG>GAC	p.E655D	PCF11_uc010rsu.1_Missense_Mutation_p.E655D	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	655					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						TTCCTAAAGAGTTAACTCTTG	0.368													17	58					0	0	0.004990	0	0
RPUSD4	84881	broad.mit.edu	37	11	126079570	126079570	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr11:126079570C>T	uc001qde.2	-	3	457	c.403G>A	c.(403-405)GCA>ACA	p.A135T	FAM118B_uc001qdf.2_5'Flank|FAM118B_uc009zca.2_5'Flank|FAM118B_uc001qdg.2_5'Flank|RPUSD4_uc010sbl.1_5'Flank|RPUSD4_uc009zbz.2_Missense_Mutation_p.A135T|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	135					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		AGCATCTTTGCCAGGATAGGT	0.532													5	250					0	0	0.001168	0	0
SLC6A13	6540	broad.mit.edu	37	12	346349	346349	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:346349C>G	uc001qic.1	-	6	724	c.671G>C	c.(670-672)TGG>TCG	p.W224S	SLC6A13_uc009zdj.1_Missense_Mutation_p.W224S|SLC6A13_uc010sdl.1_Missense_Mutation_p.W132S|SLC6A13_uc010sdm.1_Missense_Mutation_p.W105S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	224	Helical; Name=4; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CACCCCCTTCCAGATGCAGAA	0.632													26	80					0	0	0.003954	0	0
DCP1B	196513	broad.mit.edu	37	12	2064679	2064679	+	Missense_Mutation	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:2064679G>C	uc001qjx.1	-	6	650	c.570C>G	c.(568-570)ATC>ATG	p.I190M	DCP1B_uc010sdy.1_Missense_Mutation_p.I88M	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	190					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			GATTGTCATAGATGGCAGAGG	0.413													61	123					0	0	0.003610	0	0
DDX47	51202	broad.mit.edu	37	12	12980185	12980185	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:12980185A>C	uc001rav.2	+	14	1710	c.1112A>C	c.(1111-1113)GAT>GCT	p.D371A	DDX47_uc001rax.2_Missense_Mutation_p.D371A|DDX47_uc001ray.2_Missense_Mutation_p.D322A	NM_016355	NP_057439	Q9H0S4	DDX47_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	371	Helicase C-terminal.					nucleolus|nucleolus	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding				0		Prostate(47;0.0526)		BRCA - Breast invasive adenocarcinoma(232;0.0354)		CTCAGGTATGATGTGGAACTC	0.448													35	70					0	0	0.004289	0	0
ITPR2	3709	broad.mit.edu	37	12	26810769	26810769	+	Missense_Mutation	SNP	A	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:26810769A>T	uc001rhg.2	-	18	2480	c.2063T>A	c.(2062-2064)ATT>AAT	p.I688N		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	688	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TTCATCATCAATGTCATCTGA	0.423													20	63					0	0	0.009535	0	0
SLC2A13	114134	broad.mit.edu	37	12	40265609	40265609	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:40265609T>C	uc010skm.1	-	5	1240	c.1189A>G	c.(1189-1191)AGT>GGT	p.S397G	C12orf40_uc009zjv.1_Intron|SLC2A13_uc001rme.1_Missense_Mutation_p.S44G	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	397	Helical; Name=9; (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				CCTGCTAAACTACCAAAGGTA	0.378										HNSCC(50;0.14)			30	50					0	0	0.008361	0	0
CCNT1	904	broad.mit.edu	37	12	49088009	49088009	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:49088009G>A	uc001rse.1	-	9	1311	c.988C>T	c.(988-990)CCG>TCG	p.P330S	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.P45S	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	330					cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						CGCTTGCCCGGCAACATCTCC	0.488													4	103					0	0	0.009096	0	0
MARS	4141	broad.mit.edu	37	12	57891971	57891971	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:57891971A>C	uc001sog.2	+	8	825	c.802A>C	c.(802-804)ATC>CTC	p.I268L	MARS_uc001sof.1_RNA|MARS_uc010srp.1_Missense_Mutation_p.I141L|MARS_uc010srq.1_Missense_Mutation_p.I34L	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	268					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	GAATGTGCTCATCACCAGTGC	0.537													25	54					0	0	0.003330	0	0
PEBP1	5037	broad.mit.edu	37	12	118577332	118577332	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:118577332G>T	uc001twu.1	+	3	467	c.322G>T	c.(322-324)GGC>TGC	p.G108C	PEBP1_uc010szc.1_Missense_Mutation_p.G108C	NM_002567	NP_002558	P30086	PEBP1_HUMAN	prostatic binding protein	108							ATP binding|phosphatidylethanolamine binding|serine-type endopeptidase inhibitor activity			ovary(1)	1	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGATTATGTGGGCTCGGGGCC	0.527								Direct_reversal_of_damage					13	61					5.50884e-06	5.89022e-06	0.001368	1	0
SUPT16H	11198	broad.mit.edu	37	14	21821861	21821861	+	Splice_Site	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:21821861C>T	uc001wao.2	-	24	3259	c.2920_splice	c.e24+1	p.D974_splice	SUPT16H_uc001wan.2_Splice_Site_p.D118_splice	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation						DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		GTAAGACTAACCTGACTCTTC	0.378													27	95					0	0	0.010818	0	0
OR4E2	26686	broad.mit.edu	37	14	22133796	22133796	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:22133796C>G	uc010tmd.1	+	1	500	c.500C>G	c.(499-501)CCT>CGT	p.P167R		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		ATTCGTCTACCTTACTGTGGC	0.458													49	111					0	0	0.003610	0	0
NIN	51199	broad.mit.edu	37	14	51219341	51219341	+	Silent	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:51219341T>A	uc001wym.2	-	21	5036	c.4845A>T	c.(4843-4845)ACA>ACT	p.T1615T	NIN_uc001wyi.2_Silent_p.T1615T|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Silent_p.T902T|NIN_uc010tqp.1_Silent_p.T1621T|NIN_uc001wyo.2_Silent_p.T1615T	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1615	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					ATAGCATTTCTGTTAGACGTT	0.368			T	PDGFRB	MPD								142	330					0	0	0.003610	0	0
MNAT1	4331	broad.mit.edu	37	14	61434986	61434986	+	Silent	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:61434986T>C	uc001xfd.2	+	8	960	c.849T>C	c.(847-849)CTT>CTC	p.L283L	MNAT1_uc001xfe.2_Silent_p.L241L	NM_002431	NP_002422	P51948	MAT1_HUMAN	menage a trois 1 (CAK assembly factor)	283					cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein complex assembly|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	cytoplasm|holo TFIIH complex	protein N-terminus binding|zinc ion binding			ovary(1)|lung(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.0174)		CACAGGACCTTGCTGGAGGCT	0.398								Direct_reversal_of_damage|NER					39	79					0	0	0.008740	0	0
PAPLN	89932	broad.mit.edu	37	14	73733497	73733497	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:73733497T>C	uc010ttx.1	+	24	3621	c.3458T>C	c.(3457-3459)TTG>TCG	p.L1153S	PAPLN_uc001xnw.3_Missense_Mutation_p.L1126S|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_Intron|PAPLN_uc010tty.1_Missense_Mutation_p.L1137S|PAPLN_uc010arm.2_Missense_Mutation_p.L352S|PAPLN_uc010arn.2_Intron	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	1153	Ig-like C2-type 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCCAGGCTATTGTGTGTGGTA	0.542													6	13					0	0	0.003080	0	0
DLK1	8788	broad.mit.edu	37	14	101198410	101198410	+	Silent	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:101198410C>T	uc001yhs.3	+	4	447	c.294C>T	c.(292-294)GCC>GCT	p.A98A	DLK1_uc001yhu.3_Silent_p.A98A	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	98	Extracellular (Potential).|EGF-like 3.				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				CCCCCTGTGCCAACAACAGGA	0.627													3	76					0	0	0.004672	0	0
ACSBG1	23205	broad.mit.edu	37	15	78474881	78474881	+	Missense_Mutation	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr15:78474881T>G	uc002bdh.2	-	7	877	c.821A>C	c.(820-822)AAC>ACC	p.N274T	ACSBG1_uc010umw.1_Missense_Mutation_p.N270T|ACSBG1_uc010umx.1_Missense_Mutation_p.N32T|ACSBG1_uc010umy.1_Missense_Mutation_p.N167T	NM_015162	NP_055977	Q96GR2	ACBG1_HUMAN	lipidosin	274					long-chain fatty acid metabolic process|myelination|very long-chain fatty acid metabolic process	cytoplasmic membrane-bounded vesicle|endoplasmic reticulum|microsome	ATP binding|long-chain fatty acid-CoA ligase activity|very long-chain fatty acid-CoA ligase activity			ovary(1)	1						ACAGCACTGGTTGGGCTGCTG	0.587													7	29					0	0	0.003080	0	0
SOLH	6650	broad.mit.edu	37	16	599030	599030	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr16:599030G>A	uc002chi.2	+	5	1850	c.1487G>A	c.(1486-1488)GGG>GAG	p.G496E		NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	496	Calpain catalytic.				proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				TTCCCTCCCGGGCCCGAGTCT	0.657													25	92					0	0	0.007291	0	0
TMEM186	25880	broad.mit.edu	37	16	8890423	8890423	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr16:8890423T>C	uc002cze.2	-	2	62	c.28A>G	c.(28-30)AGG>GGG	p.R10G	PMM2_uc002czf.3_5'Flank|PMM2_uc010uyf.1_5'Flank|PMM2_uc010uyg.1_5'Flank|PMM2_uc010uyh.1_5'Flank|PMM2_uc010buj.2_5'Flank|PMM2_uc010uyi.1_5'Flank|PMM2_uc010uye.1_5'Flank	NM_015421	NP_056236	Q96B77	TM186_HUMAN	transmembrane protein 186	10						integral to membrane|mitochondrion				ovary(1)	1						CCCCGAAACCTACGCACAGCT	0.547													20	56					0	0	0.012319	0	0
SPNS1	83985	broad.mit.edu	37	16	28989282	28989282	+	Missense_Mutation	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr16:28989282A>G	uc010vdi.1	+	4	501	c.361A>G	c.(361-363)AGG>GGG	p.R121G	uc010vct.1_Intron|SPNS1_uc002dry.2_Missense_Mutation_p.R121G|SPNS1_uc002drx.2_Missense_Mutation_p.R48G|SPNS1_uc002dsa.2_Missense_Mutation_p.R121G|SPNS1_uc002drz.2_Missense_Mutation_p.R121G|SPNS1_uc010byp.2_Missense_Mutation_p.R99G|SPNS1_uc010byq.1_Missense_Mutation_p.R48G	NM_001142448	NP_001135920	Q9H2V7	SPNS1_HUMAN	spinster homolog 1 isoform 1	121					lipid transport|transmembrane transport	integral to membrane|mitochondrial inner membrane	protein binding				0						CCTGGGTGACAGGTACAATCG	0.577											OREG0023711	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	69	79					0	0	0.003610	0	0
PMFBP1	83449	broad.mit.edu	37	16	72198700	72198700	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr16:72198700T>C	uc002fcc.3	-	3	300	c.128A>G	c.(127-129)AAT>AGT	p.N43S	PMFBP1_uc002fcd.2_Missense_Mutation_p.N43S|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	43										ovary(2)	2		Ovarian(137;0.179)				GCAGAGCTGATTGTCCTGCAA	0.542													70	89					0	0	0.003610	0	0
AIPL1	23746	broad.mit.edu	37	17	6328845	6328845	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:6328845C>T	uc002gcp.2	-	6	1185	c.1090G>A	c.(1090-1092)GCA>ACA	p.A364T	AIPL1_uc002gcq.2_Missense_Mutation_p.A304T|AIPL1_uc002gcr.2_Missense_Mutation_p.A301T|AIPL1_uc010clk.2_Missense_Mutation_p.A342T|AIPL1_uc010cll.2_Missense_Mutation_p.A340T|AIPL1_uc002gcs.2_3'UTR	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	364					protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		gggggccctgcggacagctct	0.269													55	72					0	0	0.003610	0	0
AIPL1	23746	broad.mit.edu	37	17	6328868	6328868	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:6328868G>A	uc002gcp.2	-	6	1162	c.1067C>T	c.(1066-1068)ACA>ATA	p.T356I	AIPL1_uc002gcq.2_Missense_Mutation_p.T296I|AIPL1_uc002gcr.2_Missense_Mutation_p.T293I|AIPL1_uc010clk.2_Missense_Mutation_p.T334I|AIPL1_uc010cll.2_Missense_Mutation_p.T332I|AIPL1_uc002gcs.2_3'UTR	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	356					protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		agatggtgctgtgggtggctc	0.259													66	79					0	0	0.003610	0	0
AMAC1L3	643664	broad.mit.edu	37	17	7386125	7386125	+	Silent	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:7386125C>T	uc010cmj.1	+	2	937	c.822C>T	c.(820-822)GTC>GTT	p.V274V	ZBTB4_uc002ghd.3_Intron|POLR2A_uc002ghe.2_5'Flank|POLR2A_uc002ghf.3_5'Flank	NM_001102614	NP_001096084	P0C7Q6	AMCL3_HUMAN	acyl-malonyl condensing enzyme 1-like 3	274	DUF6 2.|Helical; (Potential).					integral to membrane					0		Prostate(122;0.173)				GCTATGCGGTCACCAAGGCCC	0.592													26	143					0	0	0.004656	0	0
FLCN	201163	broad.mit.edu	37	17	17119717	17119717	+	Missense_Mutation	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:17119717A>G	uc002gra.3	-	11	1781	c.1277T>C	c.(1276-1278)ATC>ACC	p.I426T	PLD6_uc010cpn.2_RNA	NM_144997	NP_659434	Q8NFG4	FLCN_HUMAN	folliculin isoform 1	426					regulation of protein phosphorylation	cytoplasm|nucleus|plasma membrane	protein binding			thyroid(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)	3						GTGGGGGGGGATCTGCACGTG	0.667									Birt-Hogg-Dub__syndrome|Familial_Non-VHL_Clear_Cell_Renal_Cancer				4	32					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	17	39296329	39296329	+	RNA	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:39296329T>G	uc010cxk.1	-	1		c.375A>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		ggcagcagGTTGGCTGGCAGC	0.343													4	54					0	0	0.009096	0	0
SKAP1	8631	broad.mit.edu	37	17	46266785	46266785	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:46266785C>T	uc002ini.1	-	5	470	c.358G>A	c.(358-360)GAT>AAT	p.D120N	SKAP1_uc002inj.1_Missense_Mutation_p.D120N|SKAP1_uc010dbd.1_Missense_Mutation_p.D26N|SKAP1_uc010dbe.1_Missense_Mutation_p.D120N	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	120	PH.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						TGACCAATACCTTTGCTTTTC	0.358													22	82					0	0	0.002780	0	0
FN3KRP	79672	broad.mit.edu	37	17	80674717	80674717	+	Missense_Mutation	SNP	G	A	A	rs138953335		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr17:80674717G>A	uc002kfu.2	+	1	136	c.86G>A	c.(85-87)CGG>CAG	p.R29Q	FN3KRP_uc010wvr.1_5'UTR	NM_024619	NP_078895	Q9HA64	KT3K_HUMAN	fructosamine 3 kinase related protein	29							kinase activity				0	Breast(20;0.000523)|all_neural(118;0.0952)		BRCA - Breast invasive adenocarcinoma(99;0.0344)|OV - Ovarian serous cystadenocarcinoma(97;0.061)			AGCCAGGGCCGGAGCTACGAC	0.701													3	42					0	0	0.004672	0	0
PTPRM	5797	broad.mit.edu	37	18	8376563	8376563	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr18:8376563C>T	uc002knn.3	+	24	3894	c.3391C>T	c.(3391-3393)CGG>TGG	p.R1131W	PTPRM_uc010dkv.2_Missense_Mutation_p.R1144W|PTPRM_uc010wzl.1_Missense_Mutation_p.R918W	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	1131	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				CAGGGAGCTGCGGTCACGGAG	0.572													4	55					0	0	0.009096	0	0
TMX3	54495	broad.mit.edu	37	18	66378637	66378637	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr18:66378637A>C	uc002lkf.2	-	3	240	c.105T>G	c.(103-105)TTT>TTG	p.F35L	TMX3_uc010xez.1_5'UTR|TMX3_uc010xfa.1_Missense_Mutation_p.F35L|TMX3_uc002lkg.3_Missense_Mutation_p.F35L	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	35	Thioredoxin.|Lumenal (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						GATTTTCTTTAAACCTAAAAA	0.279													34	46					0	0	0.002836	0	0
ATP8B3	148229	broad.mit.edu	37	19	1785678	1785678	+	Missense_Mutation	SNP	C	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr19:1785678C>A	uc002ltw.2	-	26	3417	c.3183G>T	c.(3181-3183)AAG>AAT	p.K1061N	ATP8B3_uc002ltv.2_Missense_Mutation_p.K1024N|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	1061	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACAGCTCCGGCTTCTCCAGGC	0.602													4	16					0.00198382	0.00208902	0.001984	1	0
SFRS14	10147	broad.mit.edu	37	19	19115397	19115397	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr19:19115397G>T	uc002nkx.2	-	7	2655	c.2509C>A	c.(2509-2511)CTA>ATA	p.L837I	SFRS14_uc002nkz.1_Missense_Mutation_p.L851I|SFRS14_uc002nla.1_Missense_Mutation_p.L837I|SFRS14_uc002nlb.2_Missense_Mutation_p.L837I|SFRS14_uc010xqk.1_Missense_Mutation_p.L606I	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	837					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			GATGGACATAGTTCAAACACT	0.463													35	90					1.07637e-12	1.21638e-12	0.004878	1	0
ALDH16A1	126133	broad.mit.edu	37	19	49969107	49969107	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr19:49969107G>A	uc002pnt.2	+	13	1797	c.1681G>A	c.(1681-1683)GGT>AGT	p.G561S	ALDH16A1_uc010yar.1_Missense_Mutation_p.G510S|ALDH16A1_uc010yas.1_Missense_Mutation_p.G396S|ALDH16A1_uc010yat.1_Missense_Mutation_p.G398S	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	561							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		CGTGGCTGAGGGTGGAGCCAA	0.642													12	31					0	0	0.001368	0	0
ZNF836	162962	broad.mit.edu	37	19	52659397	52659397	+	Silent	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr19:52659397G>A	uc010ydi.1	-	5	1913	c.1539C>T	c.(1537-1539)CTC>CTT	p.L513L	ZNF836_uc010ydj.1_Silent_p.L513L	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	513	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TATGTCGAGTGAGTAATGAGC	0.388													28	73					0	0	0.004656	0	0
NLRP11	204801	broad.mit.edu	37	19	56329449	56329449	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr19:56329449G>T	uc010ygf.1	-	4	803	c.92C>A	c.(91-93)GCA>GAA	p.A31E	NLRP11_uc002qmb.2_Intron|NLRP11_uc002qmc.2_Intron|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	31	DAPIN.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AATCTTGCGTGCCAGATACTT	0.413													23	76					7.88262e-20	9.05525e-20	0.003330	1	0
KHK	3795	broad.mit.edu	37	2	27322367	27322367	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:27322367T>C	uc002ril.2	+	7	1250	c.733T>C	c.(733-735)TTC>CTC	p.F245L	KHK_uc002rim.2_Missense_Mutation_p.F245L|KHK_uc002rin.2_Missense_Mutation_p.F246L|KHK_uc002rio.2_Missense_Mutation_p.F161L|CGREF1_uc010ylf.1_3'UTR|CGREF1_uc002rip.1_3'UTR	NM_000221	NP_000212	P50053	KHK_HUMAN	ketohexokinase isoform a	245					fructose catabolic process	cytosol	ATP binding|ketohexokinase activity|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCGGATGCTTTCCCGCCACC	0.637													21	55					0	0	0.002780	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27503082	27503082	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:27503082A>T	uc002rjl.1	+	6	987	c.569A>T	c.(568-570)TAA>TTA	p.*190L	TRIM54_uc002rjn.2_5'Flank|TRIM54_uc002rjo.2_5'Flank|DNAJC5G_uc010yli.1_Nonsense_Mutation_p.K103*|DNAJC5G_uc002rjm.1_Nonstop_Mutation_p.*190L	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	190					protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GATGATTTTTAAGAGATGAAG	0.333											OREG0014517	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	58	121					0	0	0.003610	0	0
LTBP1	4052	broad.mit.edu	37	2	33359941	33359941	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:33359941A>C	uc002ros.2	+	5	1115	c.1115A>C	c.(1114-1116)AAC>ACC	p.N372T	LTBP1_uc002rot.2_Missense_Mutation_p.N46T|LTBP1_uc002rou.2_Missense_Mutation_p.N46T|LTBP1_uc002rov.2_Missense_Mutation_p.N46T|LTBP1_uc010ymz.1_Missense_Mutation_p.N46T|LTBP1_uc010yna.1_Missense_Mutation_p.N46T	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	372					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				AGCTGTCAGAACAGCTGTGAG	0.562													21	45					0	0	0.012319	0	0
IMMT	10989	broad.mit.edu	37	2	86371396	86371396	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:86371396C>G	uc002sqz.3	-	15	2660	c.2272G>C	c.(2272-2274)GAG>CAG	p.E758Q	IMMT_uc002sqy.3_Missense_Mutation_p.E499Q|IMMT_uc002srb.3_Missense_Mutation_p.E747Q|IMMT_uc002sra.3_Missense_Mutation_p.E757Q|IMMT_uc010ytd.1_Missense_Mutation_p.E746Q|IMMT_uc010yte.1_Missense_Mutation_p.E711Q	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	758	Mitochondrial intermembrane (Potential).			E -> D (in Ref. 3; CAG33074).		integral to mitochondrial inner membrane	protein binding			skin(1)	1						AAACCTCACTCTGGCTGCACC	0.473													16	38					0	0	0.008871	0	0
ASTL	431705	broad.mit.edu	37	2	96789883	96789883	+	Silent	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:96789883G>C	uc010yui.1	-	9	1002	c.1002C>G	c.(1000-1002)CCC>CCG	p.P334P		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	334					proteolysis		metalloendopeptidase activity|zinc ion binding				0						CTGCAGGAACGGGCTGGCCTC	0.672													3	93					0	0	0.001168	0	0
POTEE	445582	broad.mit.edu	37	2	132020929	132020929	+	Missense_Mutation	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:132020929T>G	uc002tsn.2	+	15	1953	c.1901T>G	c.(1900-1902)CTT>CGT	p.L634R	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.L234R|POTEE_uc002tsl.2_Missense_Mutation_p.L216R|POTEE_uc010fmy.1_Missense_Mutation_p.L98R	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	634							ATP binding				0						TTTACTTAGCTTTCTCTTAGT	0.318													6	20					0	0	0.001168	0	0
CWC22	57703	broad.mit.edu	37	2	180810243	180810243	+	Silent	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:180810243A>G	uc010frh.1	-	20	2640	c.2340T>C	c.(2338-2340)CCT>CCC	p.P780P	CWC22_uc002uno.2_Silent_p.P302P|CWC22_uc002unp.2_Silent_p.P780P	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	780						catalytic step 2 spliceosome	protein binding|RNA binding				0						ACTTTGTTATAGGATCTCTCC	0.388													63	182					0	0	0.003610	0	0
ERBB4	2066	broad.mit.edu	37	2	212295693	212295693	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:212295693C>A	uc002veg.1	-	21	2718	c.2620G>T	c.(2620-2622)GAG>TAG	p.E874*	ERBB4_uc002veh.1_Nonsense_Mutation_p.E874*|ERBB4_uc010zji.1_Nonsense_Mutation_p.E864*|ERBB4_uc010zjj.1_Nonsense_Mutation_p.E864*	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	874	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GCATTGTACTCTTTTTCATCT	0.373										TSP Lung(8;0.080)			46	112					5.34276e-22	6.18869e-22	0.003610	1	0
ARPC2	10109	broad.mit.edu	37	2	219103554	219103554	+	Missense_Mutation	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:219103554T>A	uc002vhd.2	+	6	548	c.436T>A	c.(436-438)TAT>AAT	p.Y146N	ARPC2_uc002vhe.2_Missense_Mutation_p.Y146N|ARPC2_uc002vhf.2_Missense_Mutation_p.Y32N	NM_152862	NP_690601	O15144	ARPC2_HUMAN	actin related protein 2/3 complex subunit 2	146					cellular component movement	Arp2/3 protein complex|cell projection|Golgi apparatus	actin binding|structural constituent of cytoskeleton			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;1.21e-06)|all cancers(144;0.000212)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0103)		AGTTATCCATTATAGGGATGA	0.438													27	65					0	0	0.007291	0	0
HDAC4	9759	broad.mit.edu	37	2	239988463	239988463	+	Silent	SNP	A	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:239988463A>T	uc002vyk.3	-	24	3735	c.2943T>A	c.(2941-2943)ATT>ATA	p.I981I	HDAC4_uc010fyy.2_Silent_p.I938I	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	981	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		AGGCGTCGCAAATGGCGGTCA	0.632													27	82					0	0	0.004656	0	0
FARP2	9855	broad.mit.edu	37	2	242433435	242433435	+	Silent	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr2:242433435G>C	uc002wbi.1	+	27	3177	c.3060G>C	c.(3058-3060)GTG>GTC	p.V1020V		NM_014808	NP_055623	O94887	FARP2_HUMAN	FERM, RhoGEF and pleckstrin domain protein 2	1020	PH 2.				axon guidance|neuron remodeling|Rac protein signal transduction|regulation of Rho protein signal transduction	cytoskeleton|cytosol|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(19;4.88e-34)|all_epithelial(40;4.81e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Lung NSC(271;0.0886)|Ovarian(221;0.0905)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;1.81e-33)|all cancers(36;1.61e-30)|OV - Ovarian serous cystadenocarcinoma(60;6.83e-15)|Kidney(56;1.19e-08)|KIRC - Kidney renal clear cell carcinoma(57;8.98e-08)|BRCA - Breast invasive adenocarcinoma(100;1.49e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00125)|Colorectal(34;0.0199)|COAD - Colon adenocarcinoma(134;0.121)		GGATGGAGGTGATCCAGGGGG	0.637													17	63					0	0	0.006122	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353													7	68					0	0	0.003080	0	0
BPIL1	80341	broad.mit.edu	37	20	31601760	31601760	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr20:31601760C>G	uc002wyj.2	+	5	647	c.453C>G	c.(451-453)AAC>AAG	p.N151K		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	151						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						ATGGCAGTAACAGGTGGGTGC	0.582													13	23					0	0	0.002450	0	0
ZNF341	84905	broad.mit.edu	37	20	32376706	32376706	+	Silent	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr20:32376706G>T	uc002wzy.2	+	13	1910	c.1890G>T	c.(1888-1890)GCG>GCT	p.A630A	ZNF341_uc002wzx.2_Silent_p.A623A|ZNF341_uc010geq.2_Silent_p.A540A|ZNF341_uc010ger.2_RNA|ZNF341_uc002wzz.2_Silent_p.A57A	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	630	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCGAGTCTGCGTTCAACCGCA	0.547													14	27					1.15088e-07	1.25962e-07	0.004007	1	0
PTPRT	11122	broad.mit.edu	37	20	40730779	40730779	+	Silent	SNP	G	A	A	rs146474971	by1000genomes	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr20:40730779G>A	uc002xkg.2	-	26	3883	c.3699C>T	c.(3697-3699)AAC>AAT	p.N1233N	PTPRT_uc010ggj.2_Silent_p.N1252N|PTPRT_uc010ggi.2_Silent_p.N436N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1233	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TCAGTGCTGCGTTGATGTAAT	0.552													14	68					0	0	0.003163	0	0
C21orf45	54069	broad.mit.edu	37	21	33651272	33651272	+	Silent	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr21:33651272C>T	uc002ypi.2	-	1	105	c.54G>A	c.(52-54)GAG>GAA	p.E18E	C21orf45_uc011adn.1_Silent_p.E18E	NM_018944	NP_061817	Q9NYP9	MS18A_HUMAN	chromosome 21 open reading frame 45	18					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm					0						TGTCGCCGCACTCACAGCCGC	0.607													13	38					0	0	0.003163	0	0
SON	6651	broad.mit.edu	37	21	34922663	34922663	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr21:34922663T>C	uc002yse.1	+	3	1175	c.1126T>C	c.(1126-1128)TCG>CCG	p.S376P	SON_uc002ysb.1_Missense_Mutation_p.S376P|SON_uc002ysc.2_Missense_Mutation_p.S376P|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	376					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						GCAGGAGTCGTCGGTGGCCTC	0.627													23	62					0	0	0.002299	0	0
CLASP2	23122	broad.mit.edu	37	3	33552091	33552091	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:33552091G>T	uc003cfu.2	-	36	4630	c.4276C>A	c.(4276-4278)CTA>ATA	p.L1426I	CLASP2_uc003cfs.2_Missense_Mutation_p.L633I|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	1435										ovary(3)|central_nervous_system(1)	4						AGCAGGTTTAGGGTTTCCTTG	0.393													11	50					7.03913e-09	7.82751e-09	0.001368	1	0
USP19	10869	broad.mit.edu	37	3	49155544	49155544	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:49155544G>A	uc003cwd.1	-	3	295	c.134C>T	c.(133-135)TCT>TTT	p.S45F	USP19_uc003cwa.2_5'UTR|USP19_uc003cvz.3_Missense_Mutation_p.S45F|USP19_uc011bcg.1_Missense_Mutation_p.S45F|USP19_uc003cwb.2_Missense_Mutation_p.S45F|USP19_uc003cwc.1_5'Flank|USP19_uc011bch.1_Missense_Mutation_p.S45F|USP19_uc011bci.1_Missense_Mutation_p.S45F	NM_006677	NP_006668	O94966	UBP19_HUMAN	ubiquitin thioesterase 19	45	Cytoplasmic (Potential).				ER-associated protein catabolic process|positive regulation of cell cycle process|protein deubiquitination|regulation of protein stability|response to endoplasmic reticulum stress|skeletal muscle atrophy	endoplasmic reticulum membrane|integral to membrane	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(4)|breast(2)|lung(1)	7				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		aacatatcgagaccctgtctc	0													3	10					0	0	0.004672	0	0
LAMB2	3913	broad.mit.edu	37	3	49159166	49159166	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:49159166G>A	uc003cwe.2	-	30	5350	c.5051C>T	c.(5050-5052)GCA>GTA	p.A1684V	USP19_uc003cvz.3_5'Flank|USP19_uc011bcg.1_5'Flank|USP19_uc003cwb.2_5'Flank|USP19_uc003cwd.1_5'Flank|USP19_uc011bch.1_5'Flank|USP19_uc011bci.1_5'Flank	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1684	Potential.|Domain I.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CGTTTCTTCTGCTGTAGAGGC	0.607													31	70					0	0	0.004289	0	0
ABI3BP	25890	broad.mit.edu	37	3	100593699	100593699	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:100593699A>C	uc003dun.2	-	9	1002	c.917T>G	c.(916-918)CTC>CGC	p.L306R	ABI3BP_uc003duo.2_Missense_Mutation_p.L299R|ABI3BP_uc003dup.3_Missense_Mutation_p.L299R	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	306						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						TTGTGTCTTGAGTGCATCTGA	0.343													3	8					0	0	0.004672	0	0
POLQ	10721	broad.mit.edu	37	3	121260262	121260262	+	Missense_Mutation	SNP	C	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:121260262C>A	uc003eee.3	-	3	537	c.408G>T	c.(406-408)ATG>ATT	p.M136I		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	136	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CTTTCTTCCGCATTTCCAAAA	0.348								DNA_polymerases_(catalytic_subunits)					64	183					1.43987e-31	1.68186e-31	0.003610	1	0
TNFSF10	8743	broad.mit.edu	37	3	172227069	172227069	+	Missense_Mutation	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:172227069G>C	uc003fid.2	-	4	451	c.356C>G	c.(355-357)CCT>CGT	p.P119R	TNFSF10_uc003fie.2_Intron	NM_003810	NP_003801	P50591	TNF10_HUMAN	tumor necrosis factor (ligand) superfamily,	119	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane|soluble fraction	cytokine activity|metal ion binding|tumor necrosis factor receptor binding			skin(4)|lung(1)	5	Ovarian(172;0.00197)|Breast(254;0.158)		Lung(28;1.67e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			TACTCTCTGAGGACCTCTTTC	0.388													22	57					0	0	0.002299	0	0
YEATS2	55689	broad.mit.edu	37	3	183508727	183508727	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:183508727T>C	uc003fly.2	+	21	3251	c.3056T>C	c.(3055-3057)GTG>GCG	p.V1019A	YEATS2_uc003flz.2_Missense_Mutation_p.V98A	NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	1019					histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ACGTCCCTCGTGCCTACACCA	0.532													21	55					0	0	0.002299	0	0
FGF12	2257	broad.mit.edu	37	3	192078247	192078247	+	Missense_Mutation	SNP	C	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:192078247C>A	uc003fsx.2	-	2	1106	c.280G>T	c.(280-282)GAT>TAT	p.D94Y	FGF12_uc003fsy.2_Missense_Mutation_p.D32Y	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	94					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		TTGGTCCCATCAATGGTACCA	0.408													16	50					1.67942e-08	1.85269e-08	0.006122	1	0
MUC4	4585	broad.mit.edu	37	3	195505813	195505813	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:195505813T>C	uc011bto.1	-	3	12714	c.12254A>G	c.(12253-12255)GAC>GGC	p.D4085G	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		TGAGGAAGTGTCGGTGACAGG	0.592													2	4					0	0	0.004672	0	0
SPON2	10417	broad.mit.edu	37	4	1165206	1165206	+	Missense_Mutation	SNP	A	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr4:1165206A>T	uc003gcn.3	-	2	316	c.289T>A	c.(289-291)TTT>ATT	p.F97I	SPON2_uc003gco.3_Missense_Mutation_p.F97I|SPON2_uc010ibr.2_Missense_Mutation_p.F97I|SPON2_uc003gcm.1_Missense_Mutation_p.F15I	NM_012445	NP_036577	Q9BUD6	SPON2_HUMAN	spondin 2, extracellular matrix protein	97	Spondin.				axon guidance|cell adhesion|innate immune response	proteinaceous extracellular matrix	metal ion binding			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00805)	UCEC - Uterine corpus endometrioid carcinoma (64;0.139)|Colorectal(103;0.19)		CGCTCCGCAAAGTCGCGCAGC	0.701													6	38					0	0	0.003080	0	0
KIAA1530	57654	broad.mit.edu	37	4	1347115	1347115	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr4:1347115A>C	uc003gde.3	+	5	1295	c.848A>C	c.(847-849)GAG>GCG	p.E283A		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	283											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			CCCTCAGATGAGGACGAGGAC	0.657													3	16					0	0	0.000602	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870669	69870669	+	Missense_Mutation	SNP	C	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr4:69870669C>A	uc011cao.1	-	9	1517	c.1381G>T	c.(1381-1383)GCT>TCT	p.A461S	UGT2B10_uc011can.1_Missense_Mutation_p.A377S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	498	Helical; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GCCACACAGGCCAGCAGGAAC	0.448													13	129					1.3612e-06	1.46672e-06	0.003163	1	0
TBC1D9	23158	broad.mit.edu	37	4	141560501	141560501	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr4:141560501T>C	uc010ioj.2	-	14	2691	c.2419A>G	c.(2419-2421)ACT>GCT	p.T807A		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	807						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CGTTTCGTAGTATCCTCCAGC	0.458													4	13					0	0	0.009096	0	0
RGNEF	64283	broad.mit.edu	37	5	73161823	73161823	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr5:73161823C>T	uc011csq.1	+	17	2148	c.2137C>T	c.(2137-2139)CAG>TAG	p.Q713*	RGNEF_uc003kcx.2_Nonsense_Mutation_p.Q713*|RGNEF_uc010izf.2_Nonsense_Mutation_p.Q713*|RGNEF_uc011csr.1_Nonsense_Mutation_p.Q400*	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor	713					cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		GAACAAACCACAGACCATCCT	0.269													3	21					0	0	0.009096	0	0
TMEM161B	153396	broad.mit.edu	37	5	87521633	87521633	+	Missense_Mutation	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr5:87521633A>G	uc003kjc.2	-	4	367	c.242T>C	c.(241-243)ATT>ACT	p.I81T	TMEM161B_uc011cty.1_Missense_Mutation_p.I70T|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_5'UTR	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	81						integral to membrane				skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		ATGAAGGTCAATATCCTTTGG	0.299													26	90					0	0	0.006320	0	0
GALNT10	55568	broad.mit.edu	37	5	153755873	153755873	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr5:153755873T>C	uc003lvh.2	+	5	737	c.605T>C	c.(604-606)CTT>CCT	p.L202P	GALNT10_uc003lvg.1_Missense_Mutation_p.L202P|GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Intron	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	202	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			TACATGGCCCTTTTCCCCAGT	0.498													3	163					0	0	0.009096	0	0
LCP2	3937	broad.mit.edu	37	5	169724562	169724562	+	Missense_Mutation	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr5:169724562G>C	uc003man.1	-	1	261	c.54C>G	c.(52-54)GAC>GAG	p.D18E	LCP2_uc011det.1_5'UTR	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	18	SAM.				immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		CAGCAAGGCTGTCGGGGTCCC	0.557													3	9					0	0	0.004672	0	0
NSD1	64324	broad.mit.edu	37	5	176639042	176639042	+	Silent	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr5:176639042T>C	uc003mfr.3	+	5	3780	c.3642T>C	c.(3640-3642)CTT>CTC	p.L1214L	NSD1_uc003mft.3_Silent_p.L945L|NSD1_uc003mfs.1_Silent_p.L1111L|NSD1_uc011dfx.1_Silent_p.L862L	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1214					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		CAAGCATACTTGAGGAACCAC	0.483			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			13	30					0	0	0.004990	0	0
NUP153	9972	broad.mit.edu	37	6	17688708	17688708	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:17688708G>A	uc003ncd.1	-	2	453	c.253C>T	c.(253-255)CAT>TAT	p.H85Y	NUP153_uc011dje.1_Missense_Mutation_p.H85Y|NUP153_uc010jpl.1_Missense_Mutation_p.H85Y	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	85					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			TATACCAGATGGTCCTCTTTA	0.438													35	76					0	0	0.003271	0	0
ZNF184	7738	broad.mit.edu	37	6	27420017	27420017	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:27420017T>C	uc003njj.2	-	5	2132	c.1321A>G	c.(1321-1323)ACT>GCT	p.T441A	ZNF184_uc010jqv.2_Missense_Mutation_p.T441A|ZNF184_uc003nji.2_Missense_Mutation_p.T441A	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	441					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTCTCCCCAGTATGAGTTTTT	0.403													44	91					0	0	0.010771	0	0
RGL2	5863	broad.mit.edu	37	6	33260849	33260849	+	Missense_Mutation	SNP	T	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:33260849T>C	uc003odv.2	-	16	2084	c.1951A>G	c.(1951-1953)ATC>GTC	p.I651V	RGL2_uc003odu.2_Missense_Mutation_p.I211V|RGL2_uc010jur.2_Missense_Mutation_p.I211V|RGL2_uc003odw.2_Missense_Mutation_p.I569V	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	651	Ras-associating.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						ACTCGGATGATACGGCAATCA	0.597													123	255					0	0	0.003610	0	0
NUDT3	11165	broad.mit.edu	37	6	34309651	34309651	+	Missense_Mutation	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:34309651T>G	uc003ojl.2	-	2	500	c.198A>C	c.(196-198)GAA>GAC	p.E66D		NM_006703	NP_006694	O95989	NUDT3_HUMAN	nudix-type motif 3	66	Nudix box.|Nudix hydrolase.	Magnesium 3.|Magnesium 2.		E->Q: Loss of function.	cell-cell signaling|diadenosine polyphosphate catabolic process|diphosphoinositol polyphosphate catabolic process	cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|magnesium ion binding				0						CCTCACAGACTTCACGAACTG	0.532													10	39					0	0	0.008291	0	0
ENPP4	22875	broad.mit.edu	37	6	46108114	46108114	+	Missense_Mutation	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:46108114T>G	uc003oxy.2	+	2	1053	c.794T>G	c.(793-795)TTG>TGG	p.L265W		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	265	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CTTATAGATTTGAGCCCAGTT	0.418													14	43					0	0	0.003163	0	0
DOPEY1	23033	broad.mit.edu	37	6	83862020	83862020	+	Silent	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:83862020T>A	uc003pjs.1	+	30	6323	c.6063T>A	c.(6061-6063)CCT>CCA	p.P2021P	DOPEY1_uc011dyy.1_Silent_p.P2012P|DOPEY1_uc010kbl.1_Silent_p.P2012P|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2021					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TGTTATCACCTGCAATGGAAA	0.264													15	29					0	0	0.002450	0	0
CDC40	51362	broad.mit.edu	37	6	110528715	110528715	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:110528715C>T	uc003pua.2	+	4	437	c.413C>T	c.(412-414)GCA>GTA	p.A138V		NM_015891	NP_056975	O60508	PRP17_HUMAN	cell division cycle 40 homolog	138					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm					0		all_cancers(87;6.23e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		Epithelial(106;0.0221)|all cancers(137;0.0314)|OV - Ovarian serous cystadenocarcinoma(136;0.034)		TCAGGTTATGCATTAGACCCT	0.249													42	106					0	0	0.009718	0	0
SLC16A10	117247	broad.mit.edu	37	6	111409219	111409219	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:111409219G>T	uc003pus.2	+	1	439	c.264G>T	c.(262-264)CAG>CAT	p.Q88H	SLC16A10_uc003pur.3_Missense_Mutation_p.Q88H	NM_018593	NP_061063	Q8TF71	MOT10_HUMAN	solute carrier family 16, member 10	88	Cytoplasmic (Potential).				aromatic amino acid transport|cellular nitrogen compound metabolic process|ion transport	basolateral plasma membrane|integral to membrane	amino acid transmembrane transporter activity				0		all_cancers(87;0.00172)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0313)|Colorectal(196;0.0466)		OV - Ovarian serous cystadenocarcinoma(136;0.0703)|Epithelial(106;0.12)|all cancers(137;0.132)		TCGGCATCCAGAACGCTTGCG	0.662													9	26					2.17888e-05	2.31194e-05	0.006214	1	0
C7orf27	221927	broad.mit.edu	37	7	2587034	2587034	+	Missense_Mutation	SNP	C	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr7:2587034C>G	uc003smi.2	-	3	248	c.206G>C	c.(205-207)AGT>ACT	p.S69T	C7orf27_uc003smj.1_Missense_Mutation_p.S69T	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	69					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		GACCCCAGAACTCAGGTCCTG	0.622													44	55					0	0	0.011902	0	0
SCIN	85477	broad.mit.edu	37	7	12679988	12679988	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr7:12679988G>A	uc003ssn.3	+	11	1637	c.1427G>A	c.(1426-1428)GGC>GAC	p.G476D	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.G229D	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	476	Ca(2+)-dependent actin binding.			G -> D (in Ref. 1; AAK60494).	actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		GTCTCCCAAGGCAAAGAGCCT	0.428													30	45					0	0	0.012213	0	0
FBXO24	26261	broad.mit.edu	37	7	100187679	100187679	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr7:100187679A>C	uc003uvm.1	+	2	412	c.119A>C	c.(118-120)CAG>CCG	p.Q40P	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.Q40P|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Missense_Mutation_p.Q78P|FBXO24_uc011kka.1_Missense_Mutation_p.Q28P	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	40	F-box.					ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ATTTCCATCCAGTTGTTCCCC	0.557													48	90					0	0	0.013114	0	0
IMMP2L	83943	broad.mit.edu	37	7	111127299	111127299	+	Silent	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr7:111127299T>A	uc003vfq.1	-	3	677	c.234A>T	c.(232-234)TCA>TCT	p.S78S	IMMP2L_uc010ljr.1_Silent_p.S78S|IMMP2L_uc003vfr.2_Silent_p.S78S	NM_032549	NP_115938	Q96T52	IMP2L_HUMAN	IMP2 inner mitochondrial membrane protease-like	78					protein processing involved in protein targeting to mitochondrion|proteolysis	integral to membrane|mitochondrial inner membrane peptidase complex|nucleus	serine-type peptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (4;0.053)|Epithelial(3;2.27e-07)|all cancers(3;1.36e-05)|STAD - Stomach adenocarcinoma(3;0.00148)|KIRC - Kidney renal clear cell carcinoma(11;0.0339)|Lung(3;0.0375)|Kidney(11;0.0415)|LUSC - Lung squamous cell carcinoma(290;0.173)		CTTACACCAATGATACAATGT	0.363													57	117					0	0	0.003610	0	0
SSPO	23145	broad.mit.edu	37	7	149509420	149509420	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr7:149509420G>A	uc010lpk.2	+	70	9818	c.9818G>A	c.(9817-9819)CGG>CAG	p.R3273Q		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3273	TSP type-1 12.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGAGGCCTGCGGAGCCGGACC	0.726													4	11					0	0	0.009096	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20068802	20068802	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr8:20068802C>T	uc003wzp.2	+	6	792	c.578C>T	c.(577-579)TCT>TTT	p.S193F		NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	193					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		CCTATCTTCTCTGCTGCTGGG	0.453													29	49					0	0	0.006320	0	0
PROSC	11212	broad.mit.edu	37	8	37630321	37630321	+	Missense_Mutation	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr8:37630321C>T	uc003xkh.2	+	5	445	c.368C>T	c.(367-369)GCA>GTA	p.A123V		NM_007198	NP_009129	O94903	PROSC_HUMAN	proline synthetase co-transcribed homolog	123							pyridoxal phosphate binding			central_nervous_system(1)	1		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)		L-Proline(DB00172)|Pyridoxal Phosphate(DB00114)	GTGAAGTTGGCAGACAAAGTG	0.438													4	122					0	0	0.009096	0	0
RRS1	23212	broad.mit.edu	37	8	67342373	67342373	+	Missense_Mutation	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr8:67342373G>A	uc003xwa.2	+	1	1111	c.1007G>A	c.(1006-1008)GGG>GAG	p.G336E	ADHFE1_uc003xwb.3_5'Flank|ADHFE1_uc003xwd.3_5'Flank|ADHFE1_uc003xwc.3_5'Flank|ADHFE1_uc003xwe.3_5'Flank|ADHFE1_uc003xwf.3_5'Flank|ADHFE1_uc011les.1_5'Flank|ADHFE1_uc011leq.1_5'Flank|ADHFE1_uc011ler.1_5'Flank	NM_015169	NP_055984	Q15050	RRS1_HUMAN	homolog of yeast ribosome biogenesis regulatory	336	Arg/Gly/Lys-rich.				mitotic metaphase plate congression|ribosome biogenesis	condensed nuclear chromosome|nucleolus					0		Lung NSC(129;0.197)	Epithelial(68;0.0391)|all cancers(69;0.0898)|BRCA - Breast invasive adenocarcinoma(89;0.111)|OV - Ovarian serous cystadenocarcinoma(28;0.226)			AAGAGGAAAGGGGGCTTGGGA	0.602													24	65					0	0	0.002780	0	0
TTC35	9694	broad.mit.edu	37	8	109462688	109462688	+	Silent	SNP	A	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr8:109462688A>T	uc003ymw.1	+	3	221	c.186A>T	c.(184-186)GCA>GCT	p.A62A		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	62						endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			TGATGATTGCAGCACTAGACT	0.308													27	96					0	0	0.009535	0	0
COLEC10	10584	broad.mit.edu	37	8	120114630	120114630	+	Silent	SNP	A	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr8:120114630A>G	uc003yoo.2	+	4	433	c.336A>G	c.(334-336)AAA>AAG	p.K112K		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	112	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			CTGGAGAAAAAGGCAAAGCAG	0.274													3	56					0	0	0.009096	0	0
C9orf72	203228	broad.mit.edu	37	9	27548367	27548367	+	Missense_Mutation	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:27548367T>A	uc003zqq.2	-	11	1410	c.1313A>T	c.(1312-1314)GAT>GTT	p.D438V		NM_018325	NP_060795	Q96LT7	CI072_HUMAN	hypothetical protein LOC203228 isoform a	438										ovary(3)|central_nervous_system(1)	4		all_neural(11;7.57e-10)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.00016)		TGCTGTTAAATCAAGGTCTAT	0.343													24	87					0	0	0.003954	0	0
CCIN	881	broad.mit.edu	37	9	36170075	36170075	+	Silent	SNP	C	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:36170075C>T	uc003zzb.3	+	1	687	c.576C>T	c.(574-576)CTC>CTT	p.L192L		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	192	BACK.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			TTCACGTGCTCAATGAAGACC	0.507													29	40					0	0	0.006320	0	0
FLJ46321	389763	broad.mit.edu	37	9	84605892	84605892	+	Silent	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:84605892G>A	uc004amn.2	+	4	554	c.507G>A	c.(505-507)TCG>TCA	p.S169S		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	169						integral to membrane					0						CTGAGTCATCGTTCACTCTGG	0.562													16	43					0	0	0.004990	0	0
PHF2	5253	broad.mit.edu	37	9	96416716	96416716	+	Missense_Mutation	SNP	A	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:96416716A>C	uc004aub.2	+	7	958	c.811A>C	c.(811-813)ATC>CTC	p.I271L	PHF2_uc011lug.1_Missense_Mutation_p.I154L	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	271	JmjC.				liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		CTTCTATCTCATCAGGCCGGC	0.587													15	38					0	0	0.003163	0	0
ABCA1	19	broad.mit.edu	37	9	107599352	107599352	+	Missense_Mutation	SNP	G	T	T			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:107599352G>T	uc004bcl.2	-	11	1533	c.1220C>A	c.(1219-1221)GCT>GAT	p.A407D		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	407	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATGGAACACAGCCAGTTCCTG	0.552													12	34					7.03913e-09	7.82751e-09	0.001368	1	0
NUP188	23511	broad.mit.edu	37	9	131755475	131755475	+	Splice_Site	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:131755475G>A	uc004bws.1	+	26	2663	c.2641_splice	c.e26-1	p.V881_splice	NUP188_uc004bwu.2_Splice_Site_p.V224_splice	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa						carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						GTCTCCACCAGGTGGCCCCAA	0.537											OREG0019527	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	56					0	0	0.010504	0	0
USP20	10868	broad.mit.edu	37	9	132618631	132618631	+	Missense_Mutation	SNP	T	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:132618631T>A	uc004bys.2	+	4	338	c.127T>A	c.(127-129)TGT>AGT	p.C43S	USP20_uc004byr.2_Missense_Mutation_p.C43S|USP20_uc004byt.1_Missense_Mutation_p.C43S	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	43	UBP-type.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				CCTATGGGCCTGTCTGCAGGT	0.582													52	120					0	0	0.003610	0	0
ABL1	25	broad.mit.edu	37	9	133730265	133730265	+	Missense_Mutation	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:133730265G>C	uc004bzw.2	+	3	334	c.331G>C	c.(331-333)GTC>CTC	p.V111L	ABL1_uc004bzv.2_Missense_Mutation_p.V130L	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	111	SH3.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	CCAAGGCTGGGTCCCAAGCAA	0.522			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								14	45					0	0	0.002450	0	0
ABL1	25	broad.mit.edu	37	9	133750315	133750315	+	Missense_Mutation	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:133750315T>G	uc004bzw.2	+	7	1149	c.1146T>G	c.(1144-1146)TTT>TTG	p.F382L	ABL1_uc004bzv.2_Missense_Mutation_p.F401L	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	382	Kinase activation loop.|Protein kinase.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding	p.F382L(2)		haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	TAGCTGATTTTGGCCTGAGCA	0.537			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								3	103					0	0	0.004672	0	0
C9orf98	158067	broad.mit.edu	37	9	135601117	135601117	+	Missense_Mutation	SNP	G	C	C			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:135601117G>C	uc004cbu.1	-	13	1954	c.1398C>G	c.(1396-1398)ATC>ATG	p.I466M	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_Missense_Mutation_p.I262M	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	466	Adenylate kinase.					cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		TCCCACTCTCGATGTATTCGA	0.557													3	6					0	0	0.004672	0	0
HDAC6	10013	broad.mit.edu	37	X	48682180	48682180	+	Silent	SNP	G	A	A			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chrX:48682180G>A	uc011mmi.1	+	26	3383	c.3288G>A	c.(3286-3288)AGG>AGA	p.R1096R	HDAC6_uc004dks.1_Silent_p.R1096R|HDAC6_uc010nig.1_Silent_p.R944R|HDAC6_uc004dkt.1_Silent_p.R1096R|HDAC6_uc011mmk.1_Silent_p.R1077R|HDAC6_uc004dkv.1_Silent_p.R744R|HDAC6_uc004dkw.1_Silent_p.R744R|HDAC6_uc004dkx.1_Silent_p.R459R	NM_006044	NP_006035	Q9UBN7	HDAC6_HUMAN	histone deacetylase 6	1096					aggresome assembly|cellular response to hydrogen peroxide|Hsp90 deacetylation|lysosome localization|macroautophagy|misfolded or incompletely synthesized protein catabolic process|negative regulation of proteolysis|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|polyubiquitinated misfolded protein transport|positive regulation of apoptosis|positive regulation of cellular chaperone-mediated protein complex assembly|positive regulation of epithelial cell migration|positive regulation of receptor biosynthetic process|positive regulation of signal transduction|regulation of androgen receptor signaling pathway|regulation of receptor activity|response to growth factor stimulus|response to toxin|transcription, DNA-dependent|tubulin deacetylation	aggresome|caveola|cell leading edge|cytosol|histone deacetylase complex|microtubule associated complex|perinuclear region of cytoplasm	actin binding|alpha-tubulin binding|beta-catenin binding|dynein complex binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|Hsp90 protein binding|microtubule binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|polyubiquitin binding|tau protein binding|tubulin deacetylase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4					Vorinostat(DB02546)	AGGGATCTAGGGGCCTCACTG	0.547													10	5					0	0	0.010729	0	0
RGAG1	57529	broad.mit.edu	37	X	109695935	109695935	+	Missense_Mutation	SNP	T	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chrX:109695935T>G	uc004eor.1	+	3	2336	c.2090T>G	c.(2089-2091)ATG>AGG	p.M697R	RGAG1_uc011msr.1_Missense_Mutation_p.M697R	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	697										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ATGCCACTAATGAGAGCTCAA	0.517													18	9					0	0	0.007413	0	0
FAM40A	85369	broad.mit.edu	37	1	110587506	110587507	+	Frame_Shift_Ins	INS	-	TA	TA			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr1:110587506_110587507insTA	uc001dza.1	+	11	1350_1351	c.1331_1332insTA	c.(1330-1332)TTTfs	p.F444fs	FAM40A_uc001dyz.1_Frame_Shift_Ins_p.F349fs|FAM40A_uc009wfp.1_Frame_Shift_Ins_p.F268fs	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	444						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		CGCAGCAAATTTATAGGTTACA	0.436													30	76	---	---	---	---					
NAV3	89795	broad.mit.edu	37	12	78513435	78513436	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr12:78513435_78513436insG	uc001syp.2	+	15	3632_3633	c.3459_3460insG	c.(3457-3462)GGAGGCfs	p.G1153fs	NAV3_uc001syo.2_Frame_Shift_Ins_p.G1153fs|NAV3_uc010sub.1_Frame_Shift_Ins_p.G653fs|NAV3_uc009zsf.2_Frame_Shift_Ins_p.G161fs	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1153_1154	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CTGGCCGAGGAGGCCACAGATC	0.525										HNSCC(70;0.22)			20	54	---	---	---	---					
AP1G2	8906	broad.mit.edu	37	14	24036472	24036472	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr14:24036472delC	uc001wkl.2	-	2	389	c.52delG	c.(52-54)GCCfs	p.A18fs	AP1G2_uc001wkj.2_5'UTR|AP1G2_uc001wkk.3_5'UTR|AP1G2_uc001wkn.2_5'UTR|uc001wko.1_RNA|AP1G2_uc001wkp.1_5'Flank|AP1G2_uc010tnp.1_Frame_Shift_Del_p.A18fs|AP1G2_uc010aks.2_5'UTR|AP1G2_uc010akt.2_5'UTR|AP1G2_uc010tnq.1_RNA	NM_003917	NP_003908	O75843	AP1G2_HUMAN	adaptor-related protein complex 1, gamma 2	18					interspecies interaction between organisms|intracellular protein transport|vesicle-mediated transport	AP-1 adaptor complex|endosome membrane	protein binding|protein transporter activity			ovary(1)	1	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00672)		TGAGTCTTGGCCCCGCGAATC	0.637											OREG0022606	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	56	---	---	---	---					
C16orf7	9605	broad.mit.edu	37	16	89776218	89776219	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr16:89776218_89776219delGA	uc002fom.1	-	11	1479_1480	c.1354_1355delTC	c.(1354-1356)TCCfs	p.S452fs	C16orf7_uc002fol.1_Frame_Shift_Del_p.S382fs|uc002fon.1_5'Flank	NM_004913	NP_004904	Q9Y2B5	CP007_HUMAN	chromosome 16 open reading frame 7	452					ATP synthesis coupled proton transport		GTPase activator activity|transporter activity				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		CCACAGCGGGGAGAAAAAGGGT	0.619													31	153	---	---	---	---					
RINL	126432	broad.mit.edu	37	19	39359912	39359925	+	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr19:39359912_39359925delTGCAGCGTCCGCCT	uc002ojq.2	-	11	1646_1659	c.1258_1271delAGGCGGACGCTGCA	c.(1258-1272)AGGCGGACGCTGCACfs	p.R420fs	RINL_uc002ojr.1_Frame_Shift_Del_p.R55fs|RINL_uc010xuo.1_Frame_Shift_Del_p.R534fs	NM_198445	NP_940847	Q6ZS11	RINL_HUMAN	Ras and Rab interactor-like	420_424							GTPase activator activity			pancreas(1)	1						ATCCTTTCTGTGCAGCGTCCGCCTGCGGTGCCAC	0.673													19	83	---	---	---	---					
TMEM22	80723	broad.mit.edu	37	3	136573495	136573495	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr3:136573495delG	uc003erf.3	+	2	407	c.193delG	c.(193-195)GGGfs	p.G65fs	TMEM22_uc003erg.3_Frame_Shift_Del_p.G65fs|TMEM22_uc010hub.2_Frame_Shift_Del_p.G65fs	NM_001097600	NP_001091069	Q8TBE7	TMM22_HUMAN	transmembrane protein 22	65						Golgi apparatus|integral to membrane				ovary(1)	1						GAAAAAAAAAGGGAGAGCTTT	0.403													36	128	---	---	---	---					
DCHS2	54798	broad.mit.edu	37	4	155180741	155180741	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr4:155180741delC	uc003inw.2	-	20	5380	c.5380delG	c.(5380-5382)GCAfs	p.A1794fs		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1794	Cadherin 16.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GACACTGATGCCTGGTAAATG	0.308													45	162	---	---	---	---					
MAP7	9053	broad.mit.edu	37	6	136693761	136693761	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:136693761delA	uc003qgz.2	-	8	1000	c.754delT	c.(754-756)TCTfs	p.S252fs	MAP7_uc011edf.1_Frame_Shift_Del_p.S237fs|MAP7_uc011edg.1_Frame_Shift_Del_p.S282fs|MAP7_uc010kgu.2_Frame_Shift_Del_p.S274fs|MAP7_uc011edh.1_Frame_Shift_Del_p.S237fs|MAP7_uc010kgv.2_Frame_Shift_Del_p.S274fs|MAP7_uc010kgs.2_Frame_Shift_Del_p.S106fs|MAP7_uc011edi.1_Frame_Shift_Del_p.S106fs|MAP7_uc010kgq.1_Frame_Shift_Del_p.S158fs|MAP7_uc003qha.1_Frame_Shift_Del_p.S215fs|MAP7_uc010kgr.2_Frame_Shift_Del_p.S106fs|MAP7_uc010kgt.2_Frame_Shift_Del_p.S274fs|MAP7_uc003qhb.2_RNA	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	252					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GGGCTGCAAGATGCTGAACGA	0.488													24	93	---	---	---	---					
SHPRH	257218	broad.mit.edu	37	6	146264642	146264642	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr6:146264642delT	uc003qlf.2	-	9	2274	c.1875delA	c.(1873-1875)CAAfs	p.Q625fs	SHPRH_uc003qld.2_Frame_Shift_Del_p.Q625fs|SHPRH_uc003qle.2_Frame_Shift_Del_p.Q625fs|SHPRH_uc003qlg.1_Frame_Shift_Del_p.Q181fs|SHPRH_uc003qlj.1_Frame_Shift_Del_p.Q514fs	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	625					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		TTTCATGTTCTTGGTTGAATT	0.408													64	171	---	---	---	---					
NFX1	4799	broad.mit.edu	37	9	33319104	33319106	+	In_Frame_Del	DEL	CCT	-	-			TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08									Somatic	Phase_I	Capture				Illumina GAIIx	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	g.chr9:33319104_33319106delCCT	uc003zsq.2	+	9	1946_1948	c.1885_1887delCCT	c.(1885-1887)CCTdel	p.P629del	SUGT1P1_uc010mjq.1_Intron|NFX1_uc011lnw.1_In_Frame_Del_p.P629del|NFX1_uc003zso.2_In_Frame_Del_p.P629del|NFX1_uc003zsp.1_In_Frame_Del_p.P629del|NFX1_uc010mjr.1_In_Frame_Del_p.P629del|NFX1_uc003zsr.2_In_Frame_Del_p.P629del	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	629					inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		GTGCGGCAAGCCTCTGCCTTGTG	0.438													22	39	---	---	---	---					
