Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PEX10	5192	broad.mit.edu	37	1	2341814	2341814	+	Silent	SNP	A	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:2341814A>C	uc001ajh.2	-	2	258	c.189T>G	c.(187-189)CTT>CTG	p.L63L	PEX10_uc001ajg.2_Silent_p.L63L	NM_002617	NP_002608	O60683	PEX10_HUMAN	peroxisome biogenesis factor 10 isoform 2	63					protein import into peroxisome matrix|protein import into peroxisome matrix	integral to peroxisomal membrane|peroxisomal membrane	protein binding|protein C-terminus binding|zinc ion binding|zinc ion binding			central_nervous_system(1)	1	all_cancers(77;0.000247)|all_epithelial(69;9.96e-05)|all_lung(157;0.016)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;5.35e-20)|all_lung(118;2.78e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;9e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00102)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0169)|Lung(427;0.199)		TTCTACCTGCAAGTGTGGTGA	0.597													22	24					0	0	0.00278032	0	0
KIF1B	23095	broad.mit.edu	37	1	10431203	10431203	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:10431203C>T	uc001aqx.3	+	45	5031	c.4829C>T	c.(4828-4830)TCT>TTT	p.S1610F	KIF1B_uc001aqw.3_Missense_Mutation_p.S1564F|KIF1B_uc001aqy.2_Missense_Mutation_p.S1584F|KIF1B_uc001aqz.2_Missense_Mutation_p.S1610F|KIF1B_uc001ara.2_Missense_Mutation_p.S1570F|KIF1B_uc001arb.2_Missense_Mutation_p.S1596F	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1610					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		TTCCAGTTGTCTGATATCTCT	0.488													32	102					0	0	0.00111076	0	0
KIF1B	23095	broad.mit.edu	37	1	10431286	10431286	+	Missense_Mutation	SNP	C	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:10431286C>A	uc001aqx.3	+	45	5114	c.4912C>A	c.(4912-4914)CTG>ATG	p.L1638M	KIF1B_uc001aqw.3_Missense_Mutation_p.L1592M|KIF1B_uc001aqy.2_Missense_Mutation_p.L1612M|KIF1B_uc001aqz.2_Missense_Mutation_p.L1638M|KIF1B_uc001ara.2_Missense_Mutation_p.L1598M|KIF1B_uc001arb.2_Missense_Mutation_p.L1624M	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1638					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CTGTCCCTCTCTGGTAGACTC	0.488													15	75					1.15088e-07	9.04665e-07	0.000422831	1	0
C1orf187	374946	broad.mit.edu	37	1	11775243	11775243	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:11775243C>T	uc001asr.1	+	6	1055	c.915C>T	c.(913-915)TTC>TTT	p.F305F		NM_198545	NP_940947	Q8NBI3	DRAXI_HUMAN	chromosome 1 open reading frame 187 precursor	305					axon guidance|commissural neuron differentiation in spinal cord|dorsal spinal cord development|forebrain development|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region					0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.48e-06)|COAD - Colon adenocarcinoma(227;0.000283)|BRCA - Breast invasive adenocarcinoma(304;0.000316)|Kidney(185;0.000841)|KIRC - Kidney renal clear cell carcinoma(229;0.00269)|STAD - Stomach adenocarcinoma(313;0.00754)|READ - Rectum adenocarcinoma(331;0.0651)		ACAAATGCTTCGATGACTGCA	0.582													22	106					0	0	0.00278032	0	0
CASP9	842	broad.mit.edu	37	1	15844625	15844625	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:15844625G>A	uc001awn.2	-	2	493	c.398C>T	c.(397-399)TCT>TTT	p.S133F	CASP9_uc001awm.1_Missense_Mutation_p.S133F|CASP9_uc001awo.2_Missense_Mutation_p.S133F|CASP9_uc001awp.2_5'UTR|CASP9_uc009voi.2_Intron|CASP9_uc010obm.1_Missense_Mutation_p.S50F|CASP9_uc001awq.2_Missense_Mutation_p.S50F	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	133					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		AAATCCTCCAGAACCAATGTC	0.517													30	147					0	0	0.0024448	0	0
CROCCL1	84809	broad.mit.edu	37	1	16945311	16945311	+	RNA	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:16945311G>A	uc010ocf.1	-	4		c.846C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						ACAAAAGGAAGATAGGCATTC	0.483													3	9					0	0	6.4e-05	0	0
EIF4G3	8672	broad.mit.edu	37	1	21188793	21188793	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:21188793C>G	uc001bec.2	-	18	3127	c.2871G>C	c.(2869-2871)GAG>GAC	p.E957D	EIF4G3_uc010odi.1_Missense_Mutation_p.E561D|EIF4G3_uc010odj.1_Missense_Mutation_p.E956D|EIF4G3_uc009vpz.2_Missense_Mutation_p.E677D|EIF4G3_uc001bed.2_Missense_Mutation_p.E957D|EIF4G3_uc001bef.2_Missense_Mutation_p.E993D|EIF4G3_uc001bee.2_Missense_Mutation_p.E963D	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	957	eIF3/EIF4A-binding (By similarity).|MIF4G.|HEAT 5.				interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TCACAATTTTCTCCATCTGAT	0.353													6	58					0	0	0.00116845	0	0
EIF4G3	8672	broad.mit.edu	37	1	21226358	21226358	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:21226358C>A	uc001bec.2	-	11	1919	c.1663G>T	c.(1663-1665)GAA>TAA	p.E555*	EIF4G3_uc010odi.1_Nonsense_Mutation_p.E159*|EIF4G3_uc010odj.1_Nonsense_Mutation_p.E554*|EIF4G3_uc009vpz.2_Nonsense_Mutation_p.E275*|EIF4G3_uc001bed.2_Nonsense_Mutation_p.E555*|EIF4G3_uc001bef.2_Nonsense_Mutation_p.E554*|EIF4G3_uc001bee.2_Nonsense_Mutation_p.E561*	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	555					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		GGGTCTCTTTCAGGATGAAAC	0.403													46	145					1.8453e-21	1.48709e-20	0.0025221	1	0
EIF4G3	8672	broad.mit.edu	37	1	21226427	21226427	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:21226427C>T	uc001bec.2	-	11	1850	c.1594G>A	c.(1594-1596)GAA>AAA	p.E532K	EIF4G3_uc010odi.1_Missense_Mutation_p.E136K|EIF4G3_uc010odj.1_Missense_Mutation_p.E531K|EIF4G3_uc009vpz.2_Missense_Mutation_p.E252K|EIF4G3_uc001bed.2_Missense_Mutation_p.E532K|EIF4G3_uc001bef.2_Missense_Mutation_p.E531K|EIF4G3_uc001bee.2_Missense_Mutation_p.E538K	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	532					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		AGCTCCTCTTCAGCTTTAAGC	0.358													34	105					0	0	0.00058488	0	0
CDC42	998	broad.mit.edu	37	1	22413230	22413230	+	Silent	SNP	C	G	G	rs143448220		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:22413230C>G	uc001bfq.2	+	6	649	c.357C>G	c.(355-357)CTC>CTG	p.L119L	CDC42_uc009vqg.1_Silent_p.L119L|CDC42_uc001bfp.2_Silent_p.L119L|CDC42_uc001bfr.2_Silent_p.L119L|CDC42_uc010odr.1_Silent_p.L164L|CDC42_uc010ods.1_Silent_p.L161L|CDC42_uc009vqh.2_Silent_p.L78L	NM_001039802	NP_001034891	P60953	CDC42_HUMAN	cell division cycle 42 isoform 1	119					actin cytoskeleton organization|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|establishment or maintenance of cell polarity|macrophage differentiation|muscle cell differentiation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of protein complex assembly|positive regulation of muscle cell differentiation|positive regulation of pseudopodium assembly|regulation of filopodium assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|filopodium|plasma membrane	GTP binding|GTPase activity|protein binding|thioesterase binding			haematopoietic_and_lymphoid_tissue(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)|Prostate(1639;0.0792)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0452)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.35e-07)|COAD - Colon adenocarcinoma(152;7.73e-06)|GBM - Glioblastoma multiforme(114;8.62e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000649)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00767)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.207)		AAATTGATCTCAGAGATGACC	0.438													59	182					0	0	0.000781405	0	0
CDC42	998	broad.mit.edu	37	1	22413329	22413329	+	Silent	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:22413329C>G	uc001bfq.2	+	6	748	c.456C>G	c.(454-456)GTC>GTG	p.V152V	CDC42_uc009vqg.1_Silent_p.V152V|CDC42_uc001bfp.2_Silent_p.V152V|CDC42_uc001bfr.2_Silent_p.V152V|CDC42_uc010odr.1_Silent_p.V197V|CDC42_uc010ods.1_Silent_p.V194V|CDC42_uc009vqh.2_Silent_p.V111V	NM_001039802	NP_001034891	P60953	CDC42_HUMAN	cell division cycle 42 isoform 1	152					actin cytoskeleton organization|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|establishment or maintenance of cell polarity|macrophage differentiation|muscle cell differentiation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of protein complex assembly|positive regulation of muscle cell differentiation|positive regulation of pseudopodium assembly|regulation of filopodium assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|filopodium|plasma membrane	GTP binding|GTPase activity|protein binding|thioesterase binding			haematopoietic_and_lymphoid_tissue(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)|Prostate(1639;0.0792)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0452)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.35e-07)|COAD - Colon adenocarcinoma(152;7.73e-06)|GBM - Glioblastoma multiforme(114;8.62e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000649)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00767)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.207)		TGAAGGCTGTCAAGTATGTGG	0.448													51	148					0	0	0.000781405	0	0
INPP5B	3633	broad.mit.edu	37	1	38328025	38328025	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:38328025G>C	uc001ccg.1	-	24	2798	c.2704C>G	c.(2704-2706)CAA>GAA	p.Q902E	INPP5B_uc009vvk.1_3'UTR|MTF1_uc001cce.1_5'Flank|MTF1_uc009vvj.1_5'Flank|INPP5B_uc001ccf.1_Missense_Mutation_p.Q738E	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	982	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				ATAAATTCTTGAGCCTTCTTC	0.453													16	91					0	0	0.00074312	0	0
INPP5B	3633	broad.mit.edu	37	1	38338748	38338748	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:38338748G>A	uc001ccg.1	-	19	2135	c.2041C>T	c.(2041-2043)CTG>TTG	p.L681L	INPP5B_uc009vvk.1_Silent_p.L622L|INPP5B_uc001ccf.1_Silent_p.L517L	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	761					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				TGCAGAACCAGAATGTCCTCA	0.438													28	127					0	0	0.00106085	0	0
PTPRF	5792	broad.mit.edu	37	1	44063474	44063474	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:44063474C>T	uc001cjr.2	+	12	2209	c.1869C>T	c.(1867-1869)GTC>GTT	p.V623V	PTPRF_uc001cjs.2_Silent_p.V623V|PTPRF_uc001cju.2_Silent_p.V194V|PTPRF_uc009vwt.2_Silent_p.V194V|PTPRF_uc001cjv.2_Intron|PTPRF_uc001cjw.2_5'Flank	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	623	Extracellular (Potential).|Fibronectin type-III 4.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCACCACGGTCCGGGTAAGTT	0.687													12	10					0	0	0.00244969	0	0
PTPRF	5792	broad.mit.edu	37	1	44063522	44063522	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:44063522C>T	uc001cjr.2	+	12	2257	c.1917C>T	c.(1915-1917)ATC>ATT	p.I639I	PTPRF_uc001cjs.2_Silent_p.I639I|PTPRF_uc001cju.2_Silent_p.I210I|PTPRF_uc009vwt.2_Silent_p.I210I|PTPRF_uc001cjv.2_Intron|PTPRF_uc001cjw.2_5'Flank	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	639	Extracellular (Potential).|Fibronectin type-III 4.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ACGGCGTTATCACCCAGTACT	0.682													15	13					0	0	0.000422831	0	0
CCDC18	343099	broad.mit.edu	37	1	93705376	93705376	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:93705376G>C	uc001dpq.2	+	21	3426	c.3258G>C	c.(3256-3258)TTG>TTC	p.L1086F	CCDC18_uc009wdl.1_Missense_Mutation_p.L603F	NM_206886	NP_996769	Q5T9S5	CCD18_HUMAN	sarcoma antigen NY-SAR-41	967	Potential.									ovary(2)|breast(2)|pancreas(1)	5		all_lung(203;0.00196)|Lung NSC(277;0.00903)|Melanoma(281;0.099)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00166)|GBM - Glioblastoma multiforme(16;0.00551)|Epithelial(280;0.0967)		TCCAGGAATTGAGAGATGTAC	0.343													8	37					0	0	0.000157383	0	0
ALX3	257	broad.mit.edu	37	1	110607389	110607390	+	Missense_Mutation	DNP	CG	AT	AT	rs150660098	byFrequency	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:110607389_110607390CG>AT	uc001dzb.2	-	2	501_502	c.413_414CG>AT	c.(412-414)CCG>CAT	p.P138H		NM_006492	NP_006483	O95076	ALX3_HUMAN	aristaless-like homeobox 3	138						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(81;2.35e-05)|all_epithelial(167;7.69e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.015)|all cancers(265;0.0706)|Epithelial(280;0.0758)|Colorectal(144;0.113)|LUSC - Lung squamous cell carcinoma(189;0.135)		CAGGGAGTCCCGGGGAAAGAGG	0.624													5	97					0	0	6.4e-05	0	0
DDX20	11218	broad.mit.edu	37	1	112309171	112309171	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:112309171G>A	uc001ebs.2	+	11	2482	c.2125G>A	c.(2125-2127)GAG>AAG	p.E709K	DDX20_uc010owf.1_Missense_Mutation_p.E471K|DDX20_uc001ebt.2_Missense_Mutation_p.E317K	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	709					assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCCAATCCAGAGAAATATCA	0.478													34	72					0	0	0.0024448	0	0
DDX20	11218	broad.mit.edu	37	1	112309315	112309315	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:112309315G>A	uc001ebs.2	+	11	2626	c.2269G>A	c.(2269-2271)GAC>AAC	p.D757N	DDX20_uc010owf.1_Missense_Mutation_p.D519N|DDX20_uc001ebt.2_Missense_Mutation_p.D365N	NM_007204	NP_009135	Q9UHI6	DDX20_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	757					assembly of spliceosomal tri-snRNP|ncRNA metabolic process	Cajal body|cytoskeleton|cytosol|spliceosomal complex	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding			lung(1)|kidney(1)	2		all_cancers(81;1.06e-05)|all_epithelial(167;7.36e-06)|all_lung(203;2.44e-05)|Lung NSC(69;4.15e-05)		Lung(183;0.0234)|Colorectal(144;0.0282)|all cancers(265;0.0614)|Epithelial(280;0.0999)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGATTGGTATGACTGTCATAG	0.478													35	81					0	0	0.00058488	0	0
ST7L	54879	broad.mit.edu	37	1	113124686	113124686	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:113124686C>T	uc001ecd.2	-	9	1302	c.997G>A	c.(997-999)GAA>AAA	p.E333K	ST7L_uc009wgh.2_Intron|ST7L_uc001ecc.2_Missense_Mutation_p.E150K|ST7L_uc010owg.1_Missense_Mutation_p.E268K|ST7L_uc010owh.1_Intron|ST7L_uc001ece.2_Missense_Mutation_p.E333K|ST7L_uc001ecf.2_Missense_Mutation_p.E316K|ST7L_uc001ecg.2_RNA|ST7L_uc010owi.1_Missense_Mutation_p.E268K|ST7L_uc001ech.2_Missense_Mutation_p.E316K|ST7L_uc001eci.2_Missense_Mutation_p.E333K|ST7L_uc009wgi.1_RNA|ST7L_uc010owj.1_Missense_Mutation_p.E316K	NM_017744	NP_060214	Q8TDW4	ST7L_HUMAN	suppression of tumorigenicity 7-like isoform 1	333					negative regulation of cell growth	integral to membrane	binding				0	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGAGATTTTCATGGATGTTC	0.343													30	72					0	0	0.00209593	0	0
POGZ	23126	broad.mit.edu	37	1	151377387	151377387	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:151377387G>A	uc001eyd.1	-	19	4430	c.4124C>T	c.(4123-4125)CCT>CTT	p.P1375L	POGZ_uc001eye.1_Missense_Mutation_p.P1322L|POGZ_uc010pdb.1_Missense_Mutation_p.P1366L|POGZ_uc001eyf.1_Missense_Mutation_p.P1331L|POGZ_uc010pdc.1_Missense_Mutation_p.P1313L|POGZ_uc009wmv.1_Missense_Mutation_p.P1280L|POGZ_uc010pdd.1_Missense_Mutation_p.P866L	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	1375					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGTCTCTTCAGGAGATGATCT	0.488											OREG0003905	type=REGULATORY REGION|Gene=POGZ|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	41	126					0	0	0.00148497	0	0
FLG	2312	broad.mit.edu	37	1	152281276	152281276	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:152281276G>C	uc001ezu.1	-	3	6122	c.6086C>G	c.(6085-6087)TCT>TGT	p.S2029C		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2029	Ser-rich.|Filaggrin 12.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGACTGCAGATGAAGCTTG	0.542									Ichthyosis				400	488					0	0	0.000781405	0	0
CHRNB2	1141	broad.mit.edu	37	1	154544111	154544111	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:154544111C>A	uc001ffg.2	+	5	1076	c.812C>A	c.(811-813)TCA>TAA	p.S271*		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	271	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	TTGTGCATCTCAGTGCTGCTG	0.577													142	99					1.56226e-53	1.27507e-52	0.000781405	1	0
GON4L	54856	broad.mit.edu	37	1	155723185	155723185	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:155723185G>A	uc001flz.2	-	29	5749	c.5652C>T	c.(5650-5652)TAC>TAT	p.Y1884Y	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_Intron|GON4L_uc001fly.1_Silent_p.Y1884Y|GON4L_uc009wrh.1_Silent_p.Y1884Y|GON4L_uc001fma.1_Silent_p.Y1884Y	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1884					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCTTGCTCTTGTAGGATTTGC	0.572													12	230					0	0	0.00136819	0	0
GON4L	54856	broad.mit.edu	37	1	155723194	155723194	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:155723194G>C	uc001flz.2	-	29	5740	c.5643C>G	c.(5641-5643)AGC>AGG	p.S1881R	GON4L_uc001flx.1_5'Flank|GON4L_uc009wrg.1_Intron|GON4L_uc001fly.1_Missense_Mutation_p.S1881R|GON4L_uc009wrh.1_Missense_Mutation_p.S1881R|GON4L_uc001fma.1_Missense_Mutation_p.S1881R	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1881					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TGTAGGATTTGCTGTCACAGA	0.582													12	218					0	0	0.00136819	0	0
OR10Z1	128368	broad.mit.edu	37	1	158576303	158576303	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:158576303C>T	uc010pio.1	+	1	75	c.75C>T	c.(73-75)CTC>CTT	p.L25L		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					AGTTGCAGCTCCTTCTCTTTG	0.498													30	179					0	0	0.001512	0	0
OR6N1	128372	broad.mit.edu	37	1	158735810	158735810	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:158735810G>A	uc010piq.1	-	1	663	c.663C>T	c.(661-663)ATC>ATT	p.I221I		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CTGTGCAGATGATCTGCACAT	0.488													96	90					0	0	0.000781405	0	0
PYHIN1	149628	broad.mit.edu	37	1	158943473	158943473	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:158943473G>A	uc001ftb.2	+	8	1641	c.1396G>A	c.(1396-1398)GCA>ACA	p.A466T	PYHIN1_uc001ftc.2_Missense_Mutation_p.A457T|PYHIN1_uc001ftd.2_Intron|PYHIN1_uc001fte.2_Intron	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	466					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					GTCATCGCCTGCAAACTTTAG	0.448													43	44					0	0	0.000680045	0	0
F5	2153	broad.mit.edu	37	1	169493136	169493136	+	Missense_Mutation	SNP	C	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:169493136C>A	uc001ggg.1	-	20	5940	c.5795G>T	c.(5794-5796)TGG>TTG	p.W1932L		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1932	F5/8 type C 1.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCTGGGCTCCCAGTAACCTAA	0.373													9	235					0.000274275	0.00214718	0.000274275	1	0
FASLG	356	broad.mit.edu	37	1	172634825	172634825	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:172634825C>T	uc001gis.2	+	4	672	c.515C>T	c.(514-516)TCT>TTT	p.S172F	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	172	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						GTCCTGCTTTCTGGAGTGAAG	0.433													9	109					0	0	0.000673444	0	0
CEP350	9857	broad.mit.edu	37	1	180044161	180044161	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:180044161C>T	uc001gnt.2	+	28	5955	c.5572C>T	c.(5572-5574)CTG>TTG	p.L1858L	CEP350_uc009wxl.2_Silent_p.L1857L|CEP350_uc001gnv.2_5'UTR	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1858	Potential.					centrosome|nucleus|spindle				ovary(4)	4						CCATAGGTTTCTGACAAAGCG	0.438													7	24					0	0	0.000157383	0	0
CACNA1S	779	broad.mit.edu	37	1	201042689	201042690	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:201042689_201042690GG>TT	uc001gvv.2	-	15	2371_2372	c.2144_2145CC>AA	c.(2143-2145)CCC>CAA	p.P715Q		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	715	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGCAGTGGTGGGGATGCCCTC	0.55													12	473					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	1	227618233	227618233	+	RNA	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:227618233C>G	uc001hqv.2	+	4		c.1468C>G								Homo sapiens cDNA clone IMAGE:5270051.																		CACCATGTCTCTAGTGATCCC	0.507													4	26					0	0	0.00024832	0	0
OR2L8	391190	broad.mit.edu	37	1	248112585	248112585	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:248112585G>A	uc001idt.1	+	1	426	c.426G>A	c.(424-426)CTG>CTA	p.L142L	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TGTGTGTGCTGATGATAACAG	0.438													20	192					0	0	0.00188189	0	0
FAM171A1	221061	broad.mit.edu	37	10	15256140	15256140	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:15256140C>T	uc001iob.2	-	8	1454	c.1447G>A	c.(1447-1449)GAT>AAT	p.D483N		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	483	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CTGTAGTCATCATTGCCCGAG	0.483													21	183					0	0	0.00188189	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37451603	37451603	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:37451603G>A	uc001iza.1	+	16	1858	c.1759G>A	c.(1759-1761)GAG>AAG	p.E587K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	643						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ATCTGCCTTCGAGGTATTTAG	0.333													41	154					0	0	0.000781405	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43654255	43654255	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:43654255C>T	uc001jan.2	+	3	1089	c.754C>T	c.(754-756)CGC>TGC	p.R252C	CSGALNACT2_uc001jam.1_Missense_Mutation_p.R252C	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	252	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						GACCCTCTTCCGCCCTTTTGG	0.393													9	51					0	0	0.000442599	0	0
C10orf10	11067	broad.mit.edu	37	10	45472882	45472882	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:45472882G>A	uc001jbr.3	-	2	887	c.597C>T	c.(595-597)CTC>CTT	p.L199L	RASSF4_uc001jbo.2_Intron|RASSF4_uc001jbp.2_Intron|RASSF4_uc009xmn.2_Intron|RASSF4_uc001jbq.2_Intron	NM_007021	NP_008952	Q9NTK1	DEPP_HUMAN	fasting-induced protein	199						mitochondrion					0						AGAGTGTTCTGAGGACACTGC	0.607													21	62					0	0	0.00188189	0	0
GDF2	2658	broad.mit.edu	37	10	48414216	48414216	+	Missense_Mutation	SNP	C	T	T	rs142402214	byFrequency	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:48414216C>T	uc001jfa.1	-	2	815	c.652G>A	c.(652-654)GAC>AAC	p.D218N		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	218					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						TTGGTGGAGTCGGACCGGACC	0.582													30	35					0	0	0.00209593	0	0
ANK3	288	broad.mit.edu	37	10	61830133	61830133	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:61830133G>A	uc001jky.2	-	37	10698	c.10506C>T	c.(10504-10506)TTC>TTT	p.F3502F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3502					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCAGTGTGAAGAACTGGGCCC	0.438													13	43					0	0	0.00185496	0	0
ANK3	288	broad.mit.edu	37	10	61830689	61830689	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:61830689G>C	uc001jky.2	-	37	10142	c.9950C>G	c.(9949-9951)TCA>TGA	p.S3317*	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3317					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTCATCGCTTGAATCACTGAC	0.443													36	99					0	0	0.00111076	0	0
PRF1	5551	broad.mit.edu	37	10	72360284	72360284	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:72360284G>A	uc009xqg.2	-	2	536	c.375C>T	c.(373-375)ATC>ATT	p.I125I	PRF1_uc001jrf.3_Silent_p.I125I	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	125	MACPF.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						AGTCGTTGCGGATGCTACGAG	0.627			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				5	27					0	0	0.00116845	0	0
CHST3	9469	broad.mit.edu	37	10	73765714	73765714	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:73765714C>G	uc001jsn.2	+	2	554	c.114C>G	c.(112-114)ATC>ATG	p.I38M		NM_004273	NP_004264	Q7LGC8	CHST3_HUMAN	chondroitin 6-sulfotransferase 3	38	Helical; Signal-anchor for type II membrane protein; (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity				0						TTGTCTTCATCGAAAAGGAAA	0.478													7	116					0	0	0.000274275	0	0
CDHR1	92211	broad.mit.edu	37	10	85956359	85956359	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:85956359G>A	uc001kcv.2	+	3	250	c.250G>A	c.(250-252)GAC>AAC	p.D84N	CDHR1_uc001kcw.2_Missense_Mutation_p.D84N	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	84	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						CTTTTCTGTTGACCCCACTTT	0.562													57	38					0	0	0.000781405	0	0
CALHM1	255022	broad.mit.edu	37	10	105215149	105215149	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:105215149G>A	uc001kxe.2	-	2	1051	c.911C>T	c.(910-912)ACG>ATG	p.T304M	CALHM2_uc001kxa.2_5'Flank|CALHM2_uc001kxc.2_5'Flank|CALHM2_uc001kxb.2_5'Flank|CALHM2_uc001kxd.1_5'Flank	NM_001001412	NP_001001412	Q8IU99	CAHM1_HUMAN	calcium homeostasis modulator 1	304						endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel activity|identical protein binding			ovary(1)	1						GTGCCAGCTCGTGAGCAGCCT	0.677													16	31					0	0	0.000566183	0	0
TRUB1	142940	broad.mit.edu	37	10	116734920	116734920	+	Missense_Mutation	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:116734920A>G	uc001lcd.2	+	8	893	c.832A>G	c.(832-834)ACC>GCC	p.T278A	TRUB1_uc010qsl.1_Missense_Mutation_p.T180A	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	278					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		GCTGACCCGAACCAAACAGGG	0.408													22	72					0	0	0.00229938	0	0
MKI67	4288	broad.mit.edu	37	10	129910532	129910532	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:129910532C>T	uc001lke.2	-	9	2029	c.1834G>A	c.(1834-1836)GAG>AAG	p.E612K	MKI67_uc001lkf.2_Missense_Mutation_p.E252K|MKI67_uc009yav.1_Missense_Mutation_p.E187K|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	612					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTAGGAACCTCTGTCTGAGAT	0.488													11	61					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	10	134648258	134648258	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:134648258C>T	uc010qux.1	-	40	5944	c.5944G>A	c.(5944-5946)GAA>AAA	p.E1982K		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TCCTTCTCTTCCACCTGCAGG	0.652													4	15					0	0	0.00024832	0	0
LOC653544	653544	broad.mit.edu	37	10	135491085	135491085	+	Silent	SNP	T	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr10:135491085T>A	uc010qvi.1	+	1	807	c.696T>A	c.(694-696)GGT>GGA	p.G232G		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	232						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCGGCGGGGGTCACCCTGCTC	0.741													5	45					0	0	0.00116845	0	0
OR51G2	81282	broad.mit.edu	37	11	4936273	4936273	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:4936273G>A	uc001lzr.1	-	1	621	c.621C>T	c.(619-621)GTC>GTT	p.V207V		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TAGAGACGATGACAAACATGC	0.512													11	15					0	0	0.000673444	0	0
IPO7	10527	broad.mit.edu	37	11	9451343	9451343	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:9451343G>A	uc001mho.2	+	15	1856	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	572					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		ATATAGTGAAGAAGTTACTCC	0.353													12	12					0	0	0.000978159	0	0
COPB1	1315	broad.mit.edu	37	11	14501121	14501121	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:14501121G>C	uc001mli.2	-	11	1659	c.1352C>G	c.(1351-1353)TCT>TGT	p.S451C	COPB1_uc001mlg.2_Missense_Mutation_p.S451C|COPB1_uc001mlh.2_Missense_Mutation_p.S451C	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	451					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						CTACTTGACAGATTTAATAGC	0.343													60	21					0	0	0.000781405	0	0
RAG2	5897	broad.mit.edu	37	11	36614896	36614896	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:36614896C>T	uc001mwv.3	-	2	1011	c.823G>A	c.(823-825)GGT>AGT	p.G275S	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	275					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				TGATAGCCACCAACAATAACA	0.428									Familial_Hemophagocytic_Lymphohistiocytosis				18	19					0	0	0.00074312	0	0
OR9G9	504191	broad.mit.edu	37	11	56468116	56468116	+	Missense_Mutation	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:56468116A>G	uc010rjn.1	+	1	253	c.253A>G	c.(253-255)ATC>GTC	p.I85V		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	85	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGTGACCTGCATCTCTGAAGA	0.507													19	120					0	0	0.000958276	0	0
LPXN	9404	broad.mit.edu	37	11	58295114	58295114	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:58295114C>T	uc001nmw.2	-	9	1119	c.974G>A	c.(973-975)CGG>CAG	p.R325Q	LPXN_uc009ymp.2_Missense_Mutation_p.R195Q|LPXN_uc010rkj.1_Missense_Mutation_p.R330Q|LPXN_uc010rkk.1_Missense_Mutation_p.R305Q	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2	325	LIM zinc-binding 3.				cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				GAGCGTTCCCCGGCGGTGATG	0.542													5	30					0	0	0.00116845	0	0
OR4D11	219986	broad.mit.edu	37	11	59271133	59271133	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:59271133C>G	uc001noa.1	+	1	85	c.85C>G	c.(85-87)CTT>GTT	p.L29V		NM_001004706	NP_001004706	Q8NGI4	OR4DB_HUMAN	olfactory receptor, family 4, subfamily D,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGTCTTGTTTCTTTTTTTATG	0.433													5	79					0	0	0.000602214	0	0
LRP5	4041	broad.mit.edu	37	11	68197137	68197137	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:68197137C>T	uc001ont.2	+	17	3807	c.3732C>T	c.(3730-3732)CTC>CTT	p.L1244L	LRP5_uc009ysg.2_Silent_p.L654L	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1244	EGF-like 4.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CAGTCCACCTCGTGCTCCTGC	0.592													17	420					0	0	0.00074312	0	0
FAM181B	220382	broad.mit.edu	37	11	82444012	82444012	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:82444012C>T	uc001ozp.2	-	1	895	c.760G>A	c.(760-762)GAC>AAC	p.D254N		NM_175885	NP_787081	A6NEQ2	F181B_HUMAN	hypothetical protein LOC220382	254	Gly-rich.									large_intestine(1)	1						TTCTCCAGGTCGCCCAAGCTC	0.731													4	5					0	0	0.00024832	0	0
CREBZF	58487	broad.mit.edu	37	11	85375684	85375684	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:85375684G>A	uc001pas.2	-	1	499	c.236C>T	c.(235-237)TCC>TTC	p.S79F	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	79					negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				CTCCTCGGGGGAGGGCGCGCG	0.701													33	34					0	0	0.00283554	0	0
MTMR2	8898	broad.mit.edu	37	11	95621408	95621408	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:95621408G>A	uc001pfu.2	-	2	351	c.98C>T	c.(97-99)TCA>TTA	p.S33L	MTMR2_uc001pfv.2_5'UTR|MTMR2_uc001pfs.2_5'UTR|MTMR2_uc001pft.2_5'UTR|MTMR2_uc010ruj.1_Missense_Mutation_p.S16L	NM_016156	NP_057240	Q13614	MTMR2_HUMAN	myotubularin-related protein 2 isoform 1	33	Ser-rich.					nucleus	inositol or phosphatidylinositol phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TGAATTCTCTGAATGAGAAGT	0.358													7	11					0	0	0.00198382	0	0
YAP1	10413	broad.mit.edu	37	11	102080284	102080284	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:102080284C>G	uc001pgt.2	+	6	1391	c.1021C>G	c.(1021-1023)CCA>GCA	p.P341A	YAP1_uc001pgs.2_Intron|YAP1_uc001pgu.2_Intron|YAP1_uc001pgv.2_Intron|YAP1_uc010ruo.1_Missense_Mutation_p.P163A|YAP1_uc001pgw.2_Missense_Mutation_p.P165A|YAP1_uc010rup.1_Missense_Mutation_p.P106A	NM_001130145	NP_001123617	P46937	YAP1_HUMAN	Yes-associated protein 1, 65kDa isoform 1	341	Transactivation domain.				cell proliferation|cellular response to gamma radiation|contact inhibition|hippo signaling cascade|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_cancers(8;0.000575)|all_epithelial(12;0.00564)	Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.00936)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0189)		AGCAAATTCTCCAAAATGTCA	0.368													43	40					0	0	0.000781405	0	0
YAP1	10413	broad.mit.edu	37	11	102098224	102098224	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:102098224G>C	uc001pgt.2	+	8	1558	c.1188G>C	c.(1186-1188)GAG>GAC	p.E396D	YAP1_uc001pgs.2_Missense_Mutation_p.E346D|YAP1_uc001pgu.2_Missense_Mutation_p.E380D|YAP1_uc001pgv.2_Missense_Mutation_p.E342D|YAP1_uc010ruo.1_Missense_Mutation_p.E218D|YAP1_uc001pgw.2_Missense_Mutation_p.E220D|YAP1_uc010rup.1_Missense_Mutation_p.E161D	NM_001130145	NP_001123617	P46937	YAP1_HUMAN	Yes-associated protein 1, 65kDa isoform 1	396	Transactivation domain.				cell proliferation|cellular response to gamma radiation|contact inhibition|hippo signaling cascade|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_cancers(8;0.000575)|all_epithelial(12;0.00564)	Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.00936)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0189)		CTCGAGATGAGAGTACAGACA	0.408													11	29					0	0	0.000978159	0	0
HTR3A	3359	broad.mit.edu	37	11	113856896	113856896	+	Missense_Mutation	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:113856896A>G	uc010rxb.1	+	6	955	c.722A>G	c.(721-723)TAT>TGT	p.Y241C	HTR3A_uc010rxa.1_Missense_Mutation_p.Y241C|HTR3A_uc009yyx.2_Intron|HTR3A_uc010rxc.1_Missense_Mutation_p.Y220C	NM_213621	NP_998786	P46098	5HT3A_HUMAN	5-hydroxytryptamine (serotonin) receptor 3A	235	Extracellular (Potential).				digestion|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	serotonin binding|serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;2.31e-17)|all_epithelial(67;2.1e-10)|all_hematologic(158;4.64e-05)|Melanoma(852;0.000312)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0294)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.71e-06)|Epithelial(105;2.58e-05)|all cancers(92;0.000238)|OV - Ovarian serous cystadenocarcinoma(223;0.191)	Alosetron(DB00969)|Chloroprocaine(DB01161)|Cisapride(DB00604)|Dolasetron(DB00757)|Granisetron(DB00889)|Mirtazapine(DB00370)|Ondansetron(DB00904)|Palonosetron(DB00377)|Procaine(DB00721)|Tubocurarine(DB01199)	ATGAAGTTCTATGTGAGTGGG	0.463													66	41					0	0	0.000781405	0	0
PCSK7	9159	broad.mit.edu	37	11	117097976	117097976	+	Silent	SNP	C	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr11:117097976C>A	uc001pqr.2	-	5	867	c.666G>T	c.(664-666)GTG>GTT	p.V222V		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	222	Catalytic.|Extracellular (Potential).				peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		TGCCATTCTCCACATCCGGGT	0.582			T	IGH@	MLCLS								34	82					3.3946e-10	2.70159e-09	0.00111076	1	0
VWF	7450	broad.mit.edu	37	12	6167128	6167128	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:6167128G>C	uc001qnn.1	-	14	1866	c.1616C>G	c.(1615-1617)TCT>TGT	p.S539C	VWF_uc010set.1_Missense_Mutation_p.S539C	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	539	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CGCCAGCCCAGAGGGGGTAAG	0.662													25	60					0	0	0.00127121	0	0
CAPRIN2	65981	broad.mit.edu	37	12	30906661	30906661	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:30906661C>G	uc001rji.1	-	1	788	c.37G>C	c.(37-39)GAG>CAG	p.E13Q	CAPRIN2_uc001rjg.1_5'Flank|CAPRIN2_uc001rjh.1_Missense_Mutation_p.E13Q|CAPRIN2_uc001rjj.1_5'UTR|CAPRIN2_uc001rjk.3_Missense_Mutation_p.E13Q|CAPRIN2_uc001rjl.3_Missense_Mutation_p.E13Q	NM_001002259	NP_001002259	Q6IMN6	CAPR2_HUMAN	C1q domain containing 1 isoform 1	13					negative regulation of cell growth|negative regulation of translation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein binding|positive regulation of transcription from RNA polymerase II promoter	mitochondrion|receptor complex	receptor binding|RNA binding			ovary(1)|central_nervous_system(1)	2	all_lung(12;1.13e-09)|Lung NSC(12;7.98e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					GAAGTGAGCTCGAAACCCAAT	0.408											OREG0021723	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	120					0	0	0.00244969	0	0
SLC2A13	114134	broad.mit.edu	37	12	40422219	40422219	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:40422219C>T	uc010skm.1	-	3	860	c.809G>A	c.(808-810)GGA>GAA	p.G270E	SLC2A13_uc001rmf.2_Missense_Mutation_p.G270E	NM_052885	NP_443117	Q96QE2	MYCT_HUMAN	solute carrier family 2 (facilitated glucose	270	Cytoplasmic (Potential).					integral to membrane|plasma membrane	myo-inositol:hydrogen symporter activity			ovary(1)	1		Lung NSC(34;0.105)|all_lung(34;0.123)				CTGAGTCTGTCCTTTCTGAAT	0.438										HNSCC(50;0.14)			29	121					0	0	0.00283554	0	0
DDX23	9416	broad.mit.edu	37	12	49231830	49231830	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:49231830C>T	uc001rsm.2	-	6	605	c.514G>A	c.(514-516)GAA>AAA	p.E172K		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	172	Glu-rich.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						TTTAGAGCTTCAGCCTCTCGT	0.498													76	111					0	0	0.000781405	0	0
SPATS2	65244	broad.mit.edu	37	12	49916614	49916614	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:49916614G>C	uc001rud.2	+	12	2078	c.1089G>C	c.(1087-1089)AAG>AAC	p.K363N	SPATS2_uc001rue.2_RNA|SPATS2_uc009zli.1_Missense_Mutation_p.K363N|SPATS2_uc001ruf.2_Missense_Mutation_p.K363N|SPATS2_uc001rug.2_Missense_Mutation_p.K363N	NM_023071	NP_075559	Q86XZ4	SPAS2_HUMAN	spermatogenesis associated, serine-rich 2	363						cytoplasm				breast(1)	1						CCCTAAAGAAGAGCATTGATT	0.448													29	35					0	0	0.00209593	0	0
RARG	5916	broad.mit.edu	37	12	53607847	53607847	+	Missense_Mutation	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:53607847A>G	uc001sce.2	-	7	1294	c.809T>C	c.(808-810)ATC>ACC	p.I270T	RARG_uc001scd.2_Missense_Mutation_p.I259T|RARG_uc010sob.1_Missense_Mutation_p.I248T|RARG_uc001scf.2_Missense_Mutation_p.I270T|RARG_uc001scg.2_Missense_Mutation_p.I198T|RARG_uc010soc.1_Missense_Mutation_p.I149T|RARG_uc010sod.1_Missense_Mutation_p.I307T	NM_000966	NP_000957	P13631	RARG_HUMAN	retinoic acid receptor, gamma isoform 1	270	Ligand-binding.				canonical Wnt receptor signaling pathway|embryonic eye morphogenesis|embryonic hindlimb morphogenesis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|regulation of cell size|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to retinoic acid	integral to membrane|transcription factor complex	retinoic acid receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			breast(2)|ovary(1)|lung(1)	4					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	ACTTACCAGGATATCTAGGCA	0.532											OREG0021862	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	123	195					0	0	0.000781405	0	0
DPY19L2	283417	broad.mit.edu	37	12	64061939	64061939	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:64061939G>A	uc001srp.1	-	1	416	c.235C>T	c.(235-237)CTC>TTC	p.L79F	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	79					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		AAGGGGCCGAGAAGAAAGGTC	0.602													19	85					0	0	0.00152264	0	0
LLPH	84298	broad.mit.edu	37	12	66522754	66522754	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:66522754G>A	uc010ssw.1	-	2	189	c.133C>T	c.(133-135)CAA>TAA	p.Q45*	LLPH_uc010ssx.1_RNA	NM_032338	NP_115714	Q9BRT6	LLPH_HUMAN	LLP homolog	45	Lys-rich.										0						GCTATCTCTTGAACATCTTTC	0.403													24	130					0	0	0.001512	0	0
AMDHD1	144193	broad.mit.edu	37	12	96354342	96354342	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:96354342G>C	uc001tel.1	+	5	860	c.754G>C	c.(754-756)GAT>CAT	p.D252H	AMDHD1_uc009zth.1_Missense_Mutation_p.D143H	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	252					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						ACGTGGAAAAGATATAGGGTT	0.428													55	89					0	0	0.000781405	0	0
C12orf42	374470	broad.mit.edu	37	12	103699754	103699754	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:103699754G>A	uc001tjt.2	-	5	717	c.629C>T	c.(628-630)TCT>TTT	p.S210F	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Missense_Mutation_p.S210F|C12orf42_uc001tju.2_Missense_Mutation_p.S115F	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	210										ovary(1)|central_nervous_system(1)	2						ATACTTACCAGAATTTTTCTT	0.418													6	294					0	0	0.00198382	0	0
KSR2	283455	broad.mit.edu	37	12	118293234	118293234	+	Silent	SNP	T	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:118293234T>C	uc001two.2	-	3	439	c.384A>G	c.(382-384)TCA>TCG	p.S128S		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	157					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCTGCTCACCTGACATGTGGA	0.652													3	83					0	0	6.4e-05	0	0
P2RX4	5025	broad.mit.edu	37	12	121648006	121648006	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr12:121648006C>T	uc001tzr.2	+	1	343	c.39C>T	c.(37-39)TTC>TTT	p.F13F	P2RX4_uc010szr.1_RNA|P2RX4_uc010szs.1_RNA|P2RX4_uc009zxc.2_Silent_p.F13F|P2RX4_uc001tzs.2_Silent_p.F13F|P2RX4_uc009zxb.2_RNA|P2RX4_uc010szt.1_5'UTR	NM_002560	NP_002551	Q99571	P2RX4_HUMAN	purinergic receptor P2X4	13	Cytoplasmic (Potential).				endothelial cell activation|negative regulation of cardiac muscle hypertrophy|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|regulation of apoptosis|regulation of blood pressure|regulation of sodium ion transport|relaxation of cardiac muscle|response to ATP|response to fluid shear stress|sensory perception of pain|tissue homeostasis	cell junction|perinuclear region of cytoplasm	cadherin binding|copper ion binding|extracellular ATP-gated cation channel activity|protein homodimerization activity|purinergic nucleotide receptor activity|receptor binding|zinc ion binding				0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CCTTCCTGTTCGAGTACGACA	0.706													8	12					0	0	0.000274275	0	0
UTP14C	9724	broad.mit.edu	37	13	52603705	52603705	+	Silent	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr13:52603705G>C	uc001vgb.2	+	2	1300	c.765G>C	c.(763-765)GTG>GTC	p.V255V	UTP14C_uc001vga.2_3'UTR|UTP14C_uc001vgc.2_RNA	NM_021645	NP_067677	Q5TAP6	UT14C_HUMAN	UTP14, U3 small nucleolar ribonucleoprotein,	255					cell differentiation|meiosis|multicellular organismal development|rRNA processing|spermatogenesis	nucleolus|small-subunit processome				ovary(3)|large_intestine(1)|breast(1)	5		Breast(56;0.00173)|Lung NSC(96;0.0108)|Prostate(109;0.0412)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.3e-08)		ACAAAGTCGTGAAGAAAGGAA	0.433													3	73					0	0	6.4e-05	0	0
THSD1P1	374500	broad.mit.edu	37	13	52864001	52864001	+	RNA	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr13:52864001A>G	uc001vgm.1	-	2		c.157T>C								Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						GAAAAAATAAAGCAATAGCTA	0.303													3	34					0	0	0.000602214	0	0
OLFM4	10562	broad.mit.edu	37	13	53624805	53624805	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr13:53624805G>C	uc001vhl.2	+	5	1432	c.1432G>C	c.(1432-1434)GTG>CTG	p.V478L	OLFM4_uc001vhk.1_3'UTR	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	478	Olfactomedin-like.				cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		GCAGGAAAAAGTGCAGAGCAT	0.368													16	96					0	0	0.000422831	0	0
PCDH20	64881	broad.mit.edu	37	13	61986466	61986467	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr13:61986466_61986467CC>TT	uc001vid.3	-	2	2129_2130	c.1765_1766GG>AA	c.(1765-1767)GGA>AAA	p.G589K	PCDH20_uc010thj.1_Missense_Mutation_p.G589K	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	562	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TGTCAGAATTCCTGTGACACTG	0.455													22	83					0	0	6.4e-05	0	0
RBM26	64062	broad.mit.edu	37	13	79945132	79945132	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr13:79945132C>T	uc001vkz.2	-	5	596	c.582G>A	c.(580-582)GAG>GAA	p.E194E	RBM26_uc001vky.2_Silent_p.E194E|RBM26_uc001vla.2_Silent_p.E194E|RBM26_uc001vkx.2_5'Flank|RBM26_uc001vlb.1_RNA	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	194	Arg-rich.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		CTCTGTCCCTCTCACGAAGCC	0.428													38	221					0	0	0.00170553	0	0
CIDEB	27141	broad.mit.edu	37	14	24775203	24775203	+	Silent	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:24775203G>C	uc001won.2	-	4	601	c.477C>G	c.(475-477)CTC>CTG	p.L159L	CIDEB_uc001woo.2_Silent_p.L159L|CIDEB_uc001wop.2_Silent_p.L159L|LTB4R2_uc001woq.1_5'Flank	NM_014430	NP_055245	Q9UHD4	CIDEB_HUMAN	cell death-inducing DFFA-like effector b	159					apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis	cytosol					0				GBM - Glioblastoma multiforme(265;0.0181)		TCATAGAGTAGAGCCCGTAGA	0.488													19	66					0	0	0.00188189	0	0
FANCM	57697	broad.mit.edu	37	14	45642339	45642339	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:45642339C>G	uc001wwd.3	+	13	2341	c.2242C>G	c.(2242-2244)CAA>GAA	p.Q748E	FANCM_uc010anf.2_Missense_Mutation_p.Q722E|FANCM_uc001wwe.3_Missense_Mutation_p.Q284E|FANCM_uc010ang.2_5'Flank	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	748					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						GCCTACACATCAAGTTGATCA	0.398								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				47	32					0	0	0.000781405	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633987	70633987	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:70633987C>T	uc001xly.2	-	2	1907	c.1153G>A	c.(1153-1155)GAG>AAG	p.E385K	SLC8A3_uc001xlw.2_Missense_Mutation_p.E385K|SLC8A3_uc001xlx.2_Missense_Mutation_p.E385K|SLC8A3_uc001xlz.2_Missense_Mutation_p.E385K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	385	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GTGTGCACCTCGCTCATGCTG	0.512													67	47					0	0	0.000781405	0	0
PAPLN	89932	broad.mit.edu	37	14	73720491	73720491	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:73720491C>T	uc010ttx.1	+	11	1287	c.1124C>T	c.(1123-1125)TCA>TTA	p.S375L	PAPLN_uc001xnw.3_Missense_Mutation_p.S348L|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.S375L	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	375	TSP type-1 3.					proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCACCCTGCTCAGCCTCCTGT	0.672													26	83					0	0	0.000878237	0	0
FLRT2	23768	broad.mit.edu	37	14	86088747	86088747	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:86088747G>C	uc001xvr.2	+	2	1656	c.889G>C	c.(889-891)GAT>CAT	p.D297H	FLRT2_uc010atd.2_Missense_Mutation_p.D297H	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	297	Extracellular (Potential).|LRR 10.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		AGGGGTTTTTGATAATCTCTC	0.448													48	288					0	0	0.000781405	0	0
EML5	161436	broad.mit.edu	37	14	89161727	89161727	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:89161727C>T	uc001xxg.2	-	17	2602	c.2416G>A	c.(2416-2418)GGA>AGA	p.G806R	EML5_uc001xxh.1_5'UTR	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	806	WD 12.					cytoplasm|microtubule				ovary(3)	3						AGTTTCTCTCCTTTCTTCCAG	0.338													15	47					0	0	0.000422831	0	0
SMEK1	55671	broad.mit.edu	37	14	91942166	91942166	+	Missense_Mutation	SNP	T	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:91942166T>C	uc001xzn.2	-	7	2077	c.1255A>G	c.(1255-1257)ATA>GTA	p.I419V	SMEK1_uc001xzm.2_Intron|SMEK1_uc001xzo.2_Intron|SMEK1_uc010atz.2_Missense_Mutation_p.I180V|SMEK1_uc001xzp.1_Intron|SMEK1_uc001xzq.1_Missense_Mutation_p.I295V	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	419						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		TTGCTGGTTATTTTTTGCTCT	0.308													21	15					0	0	0.00152264	0	0
MARK3	4140	broad.mit.edu	37	14	103932113	103932113	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:103932113G>C	uc001ymz.3	+	8	1426	c.760G>C	c.(760-762)GAT>CAT	p.D254H	MARK3_uc001ymx.3_Missense_Mutation_p.D254H|MARK3_uc001ymw.3_Missense_Mutation_p.D254H|MARK3_uc001yna.3_Missense_Mutation_p.D254H|MARK3_uc001ymy.3_Intron|MARK3_uc010awp.2_Missense_Mutation_p.D277H|MARK3_uc010tyb.1_Missense_Mutation_p.D65H	NM_001128918	NP_001122390	P27448	MARK3_HUMAN	MAP/microtubule affinity-regulating kinase 3	254	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|ovary(1)|stomach(1)	4		Melanoma(154;0.155)	Epithelial(46;0.241)			ACTTCCCTTTGATGGGCAAAA	0.403													8	38					0	0	0.000274275	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409722	105409722	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:105409722G>A	uc010axc.1	-	7	12186	c.12066C>T	c.(12064-12066)TCC>TCT	p.S4022S	AHNAK2_uc001ypx.2_Silent_p.S3922S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4022						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCAGGTCAGCGGAAGGGGGCT	0.657													78	30					0	0	0.000781405	0	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612													4	28					0	0	0.000602214	0	0
ZFYVE19	84936	broad.mit.edu	37	15	41099974	41099974	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:41099974G>A	uc001zmt.1	+	1	701	c.187G>A	c.(187-189)GAT>AAT	p.D63N	DNAJC17_uc001zms.1_5'Flank|DNAJC17_uc010bbz.1_5'Flank|DNAJC17_uc010bca.1_5'Flank|DNAJC17_uc010bcb.1_5'Flank|ZFYVE19_uc001zmu.1_Missense_Mutation_p.D63N|ZFYVE19_uc001zmv.1_Intron|ZFYVE19_uc001zmw.1_5'UTR|ZFYVE19_uc001zmx.1_5'UTR|ZFYVE19_uc010bcc.1_5'UTR	NM_001077268	NP_001070736	Q96K21	ZFY19_HUMAN	zinc finger, FYVE domain containing 19	63							zinc ion binding				0		all_cancers(109;3.31e-18)|all_epithelial(112;2.33e-15)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.76e-05)|COAD - Colon adenocarcinoma(120;0.151)|BRCA - Breast invasive adenocarcinoma(123;0.164)		TGGCCGGCGTGATCTCAGCTC	0.522													15	10					0	0	0.000566183	0	0
ZFYVE19	84936	broad.mit.edu	37	15	41100015	41100015	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:41100015G>A	uc001zmt.1	+	1	742	c.228G>A	c.(226-228)ATG>ATA	p.M76I	DNAJC17_uc001zms.1_5'Flank|DNAJC17_uc010bbz.1_5'Flank|DNAJC17_uc010bca.1_5'Flank|DNAJC17_uc010bcb.1_5'Flank|ZFYVE19_uc001zmu.1_Missense_Mutation_p.M76I|ZFYVE19_uc001zmv.1_Intron|ZFYVE19_uc001zmw.1_5'UTR|ZFYVE19_uc001zmx.1_5'UTR|ZFYVE19_uc010bcc.1_5'UTR	NM_001077268	NP_001070736	Q96K21	ZFY19_HUMAN	zinc finger, FYVE domain containing 19	76	FYVE-type.						zinc ion binding				0		all_cancers(109;3.31e-18)|all_epithelial(112;2.33e-15)|Lung NSC(122;5.34e-11)|all_lung(180;1.33e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;2.76e-05)|COAD - Colon adenocarcinoma(120;0.151)|BRCA - Breast invasive adenocarcinoma(123;0.164)		GAGCCACCATGGAGAGTAGGT	0.512													7	23					0	0	0.000442599	0	0
INO80	54617	broad.mit.edu	37	15	41384347	41384347	+	Missense_Mutation	SNP	C	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:41384347C>A	uc001zni.2	-	5	628	c.415G>T	c.(415-417)GAT>TAT	p.D139Y	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	139	Assembles INO80 complex module with putative regulatory components INO80E, INO80F, UCHL5, NFRKB, MCRS1 and IN80D.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						CTCTGAGAATCAGCCTCGCTG	0.378													18	20					6.94344e-10	5.50311e-09	0.00074312	1	0
TRPM7	54822	broad.mit.edu	37	15	50906430	50906430	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:50906430G>C	uc001zyt.3	-	14	1789	c.1525C>G	c.(1525-1527)CTG>GTG	p.L509V	TRPM7_uc010bew.1_Missense_Mutation_p.L509V|TRPM7_uc001zyu.2_Missense_Mutation_p.L67V	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	509	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		ATATCAATCAGAGTGATCTTA	0.363													21	22					0	0	0.00188189	0	0
DMXL2	23312	broad.mit.edu	37	15	51773559	51773559	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:51773559G>A	uc002abf.2	-	24	5969	c.5744C>T	c.(5743-5745)TCT>TTT	p.S1915F	DMXL2_uc002abd.2_5'UTR|DMXL2_uc010ufy.1_Missense_Mutation_p.S1915F|DMXL2_uc010bfa.2_Missense_Mutation_p.S1279F	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1915						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		AGATAAGGCAGATGTTTTGGT	0.383													78	78					0	0	0.000781405	0	0
AKAP13	11214	broad.mit.edu	37	15	86269660	86269660	+	Silent	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:86269660C>G	uc002blv.1	+	27	6935	c.6765C>G	c.(6763-6765)CTC>CTG	p.L2255L	AKAP13_uc002blu.1_Silent_p.L2259L|AKAP13_uc010bnf.1_Silent_p.L876L|AKAP13_uc002blw.1_Silent_p.L720L|AKAP13_uc002blx.1_Silent_p.L500L	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2255	Interaction with ESR1.|PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						CAGTTCTTCTCACTGACATTT	0.338													27	75					0	0	0.000878237	0	0
PRC1	9055	broad.mit.edu	37	15	91524227	91524227	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr15:91524227C>T	uc002bqm.2	-	6	866	c.709G>A	c.(709-711)GAG>AAG	p.E237K	PRC1_uc002bqn.2_Missense_Mutation_p.E237K|PRC1_uc002bqo.2_Missense_Mutation_p.E237K|PRC1_uc010uqs.1_Missense_Mutation_p.E196K|PRC1_uc010uqt.1_3'UTR	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	237	Potential.|Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CGCAGCCCCTCACACACTGCT	0.507													14	95					0	0	0.00244969	0	0
ZNF689	115509	broad.mit.edu	37	16	30616559	30616559	+	Missense_Mutation	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr16:30616559A>G	uc002dyx.2	-	3	849	c.529T>C	c.(529-531)TAC>CAC	p.Y177H	ZNF689_uc010bzy.2_5'UTR	NM_138447	NP_612456	Q96CS4	ZN689_HUMAN	zinc finger protein HIT-39	177	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			GGGCAAGGGTAAGGCTTTTTT	0.617													16	44					0	0	0.000566183	0	0
SRCAP	10847	broad.mit.edu	37	16	30749163	30749163	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr16:30749163C>G	uc002dze.1	+	34	8187	c.7802C>G	c.(7801-7803)TCT>TGT	p.S2601C	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S2396C	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2601	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AAGAACCTTTCTCTCACCCCT	0.552													23	48					0	0	0.00229938	0	0
BBS2	583	broad.mit.edu	37	16	56518732	56518732	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr16:56518732G>A	uc002ejd.2	-	17	2341	c.2107C>T	c.(2107-2109)CGA>TGA	p.R703*		NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	703					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						TTATTGCTTCGAATTGCATCC	0.398									Bardet-Biedl_syndrome				17	48					0	0	0.00074312	0	0
CMTM2	146225	broad.mit.edu	37	16	66614056	66614056	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr16:66614056G>C	uc002ept.2	+	2	573	c.413G>C	c.(412-414)AGA>ACA	p.R138T	CMTM2_uc010cdu.2_Intron	NM_144673	NP_653274	Q8TAZ6	CKLF2_HUMAN	chemokine-like factor superfamily 2	138	MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.068)|Epithelial(162;0.212)		GCCATTCATAGATACATACCC	0.483													5	83					0	0	0.00198382	0	0
AARS	16	broad.mit.edu	37	16	70316659	70316659	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr16:70316659G>C	uc002eyn.1	-	2	118	c.8C>G	c.(7-9)TCT>TGT	p.S3C		NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	3					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	TGTTAGAGTAGAGTCCATCTT	0.388													61	51					0	0	0.000781405	0	0
HYDIN	54768	broad.mit.edu	37	16	70896078	70896078	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr16:70896078C>T	uc002ezr.2	-	69	11775	c.11647G>A	c.(11647-11649)GAG>AAG	p.E3883K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3884										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGGGAACCCTCGGCCCAGTGG	0.562													9	20					0	0	0.000274275	0	0
PRPF8	10594	broad.mit.edu	37	17	1586885	1586885	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:1586885G>C	uc002fte.2	-	3	325	c.211C>G	c.(211-213)CGA>GGA	p.R71G		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	71						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		CCATGGTCTCGAATGATCTTC	0.478													5	68					0	0	0.000602214	0	0
ZZEF1	23140	broad.mit.edu	37	17	3926086	3926086	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:3926086G>C	uc002fxe.2	-	44	7193	c.7129C>G	c.(7129-7131)CAG>GAG	p.Q2377E	ZZEF1_uc002fxh.2_Missense_Mutation_p.Q691E|ZZEF1_uc002fxi.2_Missense_Mutation_p.Q612E	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2377							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AAATCGGTCTGAAGGAAAGTA	0.498													11	22					0	0	0.000673444	0	0
CAMTA2	23125	broad.mit.edu	37	17	4873762	4873762	+	Missense_Mutation	SNP	C	T	T	rs145978879	byFrequency	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:4873762C>T	uc002gah.1	-	17	2986	c.2878G>A	c.(2878-2880)GTG>ATG	p.V960M	SPAG7_uc002gae.2_5'Flank|SPAG7_uc002gaf.2_5'Flank|CAMTA2_uc010cku.1_Missense_Mutation_p.V983M|CAMTA2_uc002gag.1_Missense_Mutation_p.V959M|CAMTA2_uc002gai.1_Missense_Mutation_p.V962M|CAMTA2_uc010ckv.1_Missense_Mutation_p.V607M	NM_015099	NP_055914	O94983	CMTA2_HUMAN	calmodulin binding transcription activator 2	960					cardiac muscle hypertrophy in response to stress|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	calmodulin binding|chromatin binding|histone deacetylase binding|transcription factor binding			ovary(1)	1						GGCAGCCCCACGAAGTCCTCT	0.592													28	65					0	0	0.00209593	0	0
TRPV2	51393	broad.mit.edu	37	17	16330054	16330054	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:16330054G>A	uc002gpy.2	+	7	1481	c.1114G>A	c.(1114-1116)GTT>ATT	p.V372I	TRPV2_uc002gpz.2_Intron	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	372	Cytoplasmic (Potential).|Required for interaction with SLC50A1 (By similarity).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CCGAATGGTCGTTTTGGAGCC	0.507													10	22					0	0	0.00185496	0	0
ZNF286B	729288	broad.mit.edu	37	17	18565401	18565401	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:18565401C>T	uc010vyd.1	-	5	1669	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E		NM_001145045	NP_001138517	P0CG31	Z286B_HUMAN	zinc finger protein 286B	473	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAAGGCTTTTCCACACTCACT	0.393													5	10					0	0	0.000602214	0	0
ZNF286B	729288	broad.mit.edu	37	17	18565413	18565413	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:18565413C>T	uc010vyd.1	-	5	1657	c.1406G>A	c.(1405-1407)TGT>TAT	p.C469Y		NM_001145045	NP_001138517	P0CG31	Z286B_HUMAN	zinc finger protein 286B	469	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACACTCACTACATTTGTACGG	0.393													6	8					0	0	0.00116845	0	0
IKZF3	22806	broad.mit.edu	37	17	37949078	37949078	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:37949078C>T	uc002hsu.2	-	4	334	c.272G>A	c.(271-273)AGA>AAA	p.R91K	IKZF3_uc002htd.2_Missense_Mutation_p.R57K|IKZF3_uc010cwd.2_Intron|IKZF3_uc002hsv.2_Missense_Mutation_p.R57K|IKZF3_uc010cwe.2_Missense_Mutation_p.R91K|IKZF3_uc010cwf.2_Intron|IKZF3_uc010cwg.2_Intron|IKZF3_uc002hsw.2_Missense_Mutation_p.R91K|IKZF3_uc002hsx.2_Missense_Mutation_p.R91K|IKZF3_uc002hsy.2_Missense_Mutation_p.R91K|IKZF3_uc002hsz.2_Missense_Mutation_p.R91K|IKZF3_uc002hta.2_Missense_Mutation_p.R91K|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Intron|IKZF3_uc002htc.2_5'UTR	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	91					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATTATATTCTCTTGAATAGCT	0.383													11	67					0	0	0.000978159	0	0
HAP1	9001	broad.mit.edu	37	17	39887800	39887800	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:39887800G>A	uc002hxm.1	-	6	1026	c.1014C>T	c.(1012-1014)CTC>CTT	p.L338L	JUP_uc010wfs.1_Intron|HAP1_uc002hxn.1_Silent_p.L338L|HAP1_uc002hxo.1_Silent_p.L346L|HAP1_uc002hxp.1_Silent_p.L338L	NM_177977	NP_817084	P54257	HAP1_HUMAN	huntingtin-associated protein 1 isoform 2	338	Glu-rich.|HAP1 N-terminal.				brain development|protein localization|synaptic transmission	actin cytoskeleton	protein binding			ovary(2)	2		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.0677)			CAAGAGTGTCGAGTTGAGAGG	0.537													55	29					0	0	0.000781405	0	0
UBTF	7343	broad.mit.edu	37	17	42293042	42293042	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:42293042C>T	uc002igb.2	-	4	521	c.454G>A	c.(454-456)GAG>AAG	p.E152K	UBTF_uc002igc.2_Missense_Mutation_p.E152K|UBTF_uc010czs.2_Missense_Mutation_p.E152K|UBTF_uc002igd.2_Missense_Mutation_p.E152K|UBTF_uc010czt.2_Missense_Mutation_p.E152K|UBTF_uc002ige.2_Missense_Mutation_p.E152K	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	152	HMG box 1.				positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TCCGGAAGCTCCTTGTATTTC	0.547													11	95					0	0	0.00136819	0	0
SKAP1	8631	broad.mit.edu	37	17	46239837	46239837	+	Silent	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:46239837C>G	uc002ini.1	-	11	1084	c.972G>C	c.(970-972)CTG>CTC	p.L324L	SKAP1_uc002inj.1_Silent_p.L323L|SKAP1_uc010dbd.1_Silent_p.L229L|SKAP1_uc010dbe.1_Silent_p.L324L	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	324	SH3.				positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						TTACCTTGCTCAGAATACGGA	0.433													4	56					0	0	0.00116845	0	0
KIF19	124602	broad.mit.edu	37	17	72338804	72338804	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:72338804C>G	uc002jkm.3	+	4	405	c.267C>G	c.(265-267)ATC>ATG	p.I89M	KIF19_uc002jkj.2_Missense_Mutation_p.I89M|KIF19_uc002jkk.2_Missense_Mutation_p.I89M|KIF19_uc002jkl.2_Missense_Mutation_p.I89M	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	89	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AGAGCCTCATCGAGGGCGTCA	0.622													32	31					0	0	0.000814825	0	0
EIF4A3	9775	broad.mit.edu	37	17	78120725	78120725	+	Silent	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:78120725C>G	uc010wuc.1	-	2	109	c.36G>C	c.(34-36)TCG>TCC	p.S12S	EIF4A3_uc002jxs.2_Silent_p.S12S	NM_014740	NP_055555	P38919	IF4A3_HUMAN	eukaryotic translation initiation factor 4A,	12					mRNA transport|negative regulation of translation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation|rRNA processing	catalytic step 2 spliceosome|cytoplasm|exon-exon junction complex|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|poly(A) RNA binding|protein binding			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)			GCTTTCGCGCCGAGCCCGAGG	0.512													6	26					0	0	0.00198382	0	0
MIB1	57534	broad.mit.edu	37	18	19399507	19399507	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr18:19399507G>A	uc002ktq.2	+	12	1729	c.1729G>A	c.(1729-1731)GAT>AAT	p.D577N	MIB1_uc002ktp.2_Missense_Mutation_p.D216N	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	577	ANK 5.				Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			GAAACGTGATGATATCCTAGC	0.368													13	168					0	0	0.00136819	0	0
HRH4	59340	broad.mit.edu	37	18	22048831	22048831	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr18:22048831C>T	uc002kvi.2	+	2	373	c.273C>T	c.(271-273)CTC>CTT	p.L91L	HRH4_uc010xbd.1_Intron|HRH4_uc010dlx.2_Intron	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	91	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	TATTTTGGCTCACTACTGACT	0.403													11	85					0	0	0.000978159	0	0
TAF4B	6875	broad.mit.edu	37	18	23866009	23866009	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr18:23866009C>T	uc002kvu.3	+	7	1625	c.1136C>T	c.(1135-1137)TCA>TTA	p.S379L	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.S379L	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	379					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			TCTGAAAAGTCAATTATTGTT	0.463													54	13					0	0	0.000781405	0	0
DOK6	220164	broad.mit.edu	37	18	67266711	67266711	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr18:67266711C>G	uc002lkl.2	+	3	456	c.266C>G	c.(265-267)TCG>TGG	p.S89W		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	89	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GATGAAACATCGAAGACATTT	0.448													3	21					0	0	6.4e-05	0	0
TRIP10	9322	broad.mit.edu	37	19	6743264	6743264	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:6743264G>C	uc002mfs.2	+	5	471	c.405G>C	c.(403-405)GAG>GAC	p.E135D	TRIP10_uc010dux.1_Missense_Mutation_p.E135D|TRIP10_uc002mfr.2_Missense_Mutation_p.E135D|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_5'UTR	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	135	Potential.|Induction of membrane tubulation.				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						AACAGCTGGAGAATGTGAGTT	0.582													3	31					0	0	0.00024832	0	0
NFIX	4784	broad.mit.edu	37	19	13201202	13201202	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:13201202C>G	uc010xmx.1	+	10	1569	c.1516C>G	c.(1516-1518)CAG>GAG	p.Q506E	NFIX_uc002mwd.2_3'UTR|NFIX_uc002mwe.2_3'UTR|NFIX_uc002mwf.2_3'UTR|NFIX_uc002mwg.1_3'UTR			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	498					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			ACAGCAGTCTCAGGTAGGAGA	0.622													33	53					0	0	0.00111076	0	0
NR2F6	2063	broad.mit.edu	37	19	17355929	17355929	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:17355929G>A	uc002nfq.2	-	1	223	c.101C>T	c.(100-102)TCG>TTG	p.S34L		NM_005234	NP_005225	P10588	NR2F6_HUMAN	nuclear receptor subfamily 2, group F, member 6	34					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding				0						ACCGGGGGGCGAGGCCGAGTC	0.771													4	4					0	0	0.00024832	0	0
NCCRP1	342897	broad.mit.edu	37	19	39691364	39691364	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:39691364G>A	uc002okq.1	+	6	815	c.796G>A	c.(796-798)GAC>AAC	p.D266N		NM_001001414	NP_001001414	Q6ZVX7	NCRP1_HUMAN	non-specific cytotoxic cell receptor protein 1	266	FBA.				protein catabolic process					ovary(1)	1						ACGGGTGACCGACTCCTCCGT	0.617													48	191					0	0	0.000781405	0	0
AKT2	208	broad.mit.edu	37	19	40741033	40741033	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:40741033G>C	uc002onf.2	-	13	1547	c.1285C>G	c.(1285-1287)CAG>GAG	p.Q429E	AKT2_uc010egs.2_Missense_Mutation_p.Q386E|AKT2_uc010egt.2_Missense_Mutation_p.Q367E|AKT2_uc010xvj.1_Missense_Mutation_p.Q367E|AKT2_uc010egu.1_Missense_Mutation_p.Q367E|AKT2_uc002one.2_Missense_Mutation_p.Q325E	NM_001626	NP_001617	P31751	AKT2_HUMAN	AKT2 kinase	429	AGC-kinase C-terminal.				insulin receptor signaling pathway|negative regulation of plasma membrane long-chain fatty acid transport|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process	cytosol|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2			Lung(22;0.000499)			GACGTGACCTGAGGTTTGAAG	0.617			A		ovarian|pancreatic 								25	34					0	0	0.00178596	0	0
C19orf47	126526	broad.mit.edu	37	19	40832303	40832303	+	Missense_Mutation	SNP	T	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:40832303T>C	uc002oni.3	-	7	642	c.641A>G	c.(640-642)AAC>AGC	p.N214S	C19orf47_uc002ong.2_Missense_Mutation_p.N73S|C19orf47_uc002onh.2_Missense_Mutation_p.N147S	NM_178830	NP_849152	Q8N9M1	CS047_HUMAN	hypothetical protein LOC126526	214										ovary(1)|skin(1)	2			Lung(22;0.000636)			TTTGGGCATGTTGATGACGTA	0.662													20	24					0	0	0.00229938	0	0
KLK10	5655	broad.mit.edu	37	19	51518766	51518766	+	Silent	SNP	G	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:51518766G>T	uc002puy.2	-	5	666	c.585C>A	c.(583-585)ATC>ATA	p.I195I	KLK10_uc002puz.2_Silent_p.I195I|KLK10_uc002pva.2_Silent_p.I195I	NM_145888	NP_665895	O43240	KLK10_HUMAN	kallikrein-related peptidase 10 preproprotein	195	Peptidase S1.				cell cycle|proteolysis	extracellular region	serine-type endopeptidase activity			lung(2)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		TAGGGCTCAGGATAGTGATGC	0.567													53	250					7.10676e-39	5.77575e-38	0.000781405	1	0
ZNF347	84671	broad.mit.edu	37	19	53643875	53643875	+	Missense_Mutation	SNP	G	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:53643875G>T	uc002qbb.1	-	5	2275	c.2206C>A	c.(2206-2208)CCT>ACT	p.P736T	ZNF347_uc010eql.1_Missense_Mutation_p.P737T|ZNF347_uc002qbc.1_Missense_Mutation_p.P737T	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	736					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		CATTTGTAAGGTTTTTTTCCA	0.423													25	120					2.44723e-14	1.95575e-13	0.000720815	1	0
MYADM	91663	broad.mit.edu	37	19	54377552	54377552	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:54377552C>T	uc002qcl.2	+	3	917	c.769C>T	c.(769-771)CTC>TTC	p.L257F	MYADM_uc002qcm.2_Missense_Mutation_p.L257F|MYADM_uc002qcn.2_Missense_Mutation_p.L257F|MYADM_uc002qco.2_Missense_Mutation_p.L257F|MYADM_uc002qcp.2_Missense_Mutation_p.L257F	NM_001020820	NP_001018656	Q96S97	MYADM_HUMAN	myeloid-associated differentiation marker	257	MARVEL 2.|Helical; (Potential).					integral to membrane				ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.0488)		CGCCCTTGTTCTCTGGCCCCT	0.622													17	68					0	0	0.000958276	0	0
NLRP7	199713	broad.mit.edu	37	19	55450843	55450843	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:55450843G>A	uc002qih.3	-	4	1420	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	NLRP7_uc002qig.3_Silent_p.F448F|NLRP7_uc002qii.3_Silent_p.F448F|NLRP7_uc010esk.2_Silent_p.F448F|NLRP7_uc010esl.2_Silent_p.F476F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	448	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CTCCGTCCAGGAACAGACGGA	0.627													5	27					0	0	0.00116845	0	0
GALP	85569	broad.mit.edu	37	19	56694579	56694579	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:56694579G>C	uc002qmo.1	+	5	375	c.293G>C	c.(292-294)GGA>GCA	p.G98A	GALP_uc010eti.2_3'UTR	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	98					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		CCAGAGATTGGAGGTAAAGCC	0.478													26	52					0	0	0.00106085	0	0
USP29	57663	broad.mit.edu	37	19	57641187	57641187	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr19:57641187G>C	uc002qny.2	+	4	1500	c.1144G>C	c.(1144-1146)GAC>CAC	p.D382H		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	382					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCAGTGTTTAGACCAGCTGAA	0.368													37	53					0	0	0.00111076	0	0
CAPN13	92291	broad.mit.edu	37	2	30976059	30976059	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:30976059G>A	uc002rnn.2	-	10	1123	c.947C>T	c.(946-948)TCG>TTG	p.S316L	CAPN13_uc002rnp.1_Missense_Mutation_p.S316L	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	316	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					ATCTTGACACGACATCCTGTT	0.473													26	60					0	0	0.000586117	0	0
BIRC6	57448	broad.mit.edu	37	2	32626579	32626579	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:32626579C>T	uc010ezu.2	+	8	1440	c.1306C>T	c.(1306-1308)CAG>TAG	p.Q436*		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	436					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AATTGTACAACAGCTTATTCT	0.378													30	56					0	0	0.00178596	0	0
SOS1	6654	broad.mit.edu	37	2	39281894	39281894	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:39281894G>A	uc002rrk.3	-	5	622	c.581C>T	c.(580-582)TCC>TTC	p.S194F	SOS1_uc010ynr.1_RNA|SOS1_uc002rrl.2_5'Flank	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	194					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				TCCTGAGGTGGAAGGCTCTTC	0.284									Noonan_syndrome				54	78					0	0	0.000781405	0	0
MDH1	4190	broad.mit.edu	37	2	63826356	63826356	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:63826356C>G	uc002scj.1	+	5	484	c.428C>G	c.(427-429)TCA>TGA	p.S143*	MDH1_uc010ypv.1_Nonsense_Mutation_p.S161*|MDH1_uc010ypw.1_Nonsense_Mutation_p.S48*	NM_005917	NP_005908	P40925	MDHC_HUMAN	cytosolic malate dehydrogenase	143					gluconeogenesis|tricarboxylic acid cycle	centrosome|cytosol	L-malate dehydrogenase activity|malic enzyme activity			kidney(2)	2					NADH(DB00157)	GCTTCCAAGTCAGCTCCATCC	0.418													8	68					0	0	0.000442599	0	0
ACTR2	10097	broad.mit.edu	37	2	65492181	65492181	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:65492181G>A	uc002sdq.2	+	8	1101	c.886G>A	c.(886-888)GAA>AAA	p.E296K	ACTR2_uc010yqf.1_Missense_Mutation_p.E241K|ACTR2_uc002sdp.2_Missense_Mutation_p.E301K|ACTR2_uc010yqg.1_Missense_Mutation_p.E244K	NM_005722	NP_005713	P61160	ARP2_HUMAN	actin-related protein 2 isoform b	296					cellular component movement	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|ATP binding				0						TTCTAGATCTGAATTCTACAA	0.368													54	89					0	0	0.000781405	0	0
CLEC4F	165530	broad.mit.edu	37	2	71043525	71043525	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:71043525C>T	uc002shf.2	-	4	1065	c.988G>A	c.(988-990)GAA>AAA	p.E330K	CLEC4F_uc010yqv.1_Missense_Mutation_p.E330K	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	330	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						ACGTGAATTTCATCACCAGCT	0.423													10	113					0	0	0.000442599	0	0
SULT1C2	6819	broad.mit.edu	37	2	108921890	108921890	+	Missense_Mutation	SNP	G	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:108921890G>T	uc002tdy.2	+	7	1070	c.617G>T	c.(616-618)CGG>CTG	p.R206L	SULT1C2_uc010ywp.1_Missense_Mutation_p.R121L|SULT1C2_uc002tdx.2_Missense_Mutation_p.R217L|SULT1C2_uc010ywq.1_Missense_Mutation_p.R220L	NM_001056	NP_001047	O00338	ST1C2_HUMAN	sulfotransferase family, cytosolic, 1C, member 1	206	PAPS (By similarity).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine metabolic process|sulfation|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	sulfotransferase activity			ovary(1)	1						CATGAAATTCGGAAGGTGATG	0.403													4	38					0.000602214	0.00469531	0.000602214	1	0
Unknown	0	broad.mit.edu	37	2	186678413	186678413	+	RNA	SNP	A	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:186678413A>T	uc002upm.2	+	2		c.3051A>T			uc010zfu.1_Missense_Mutation_p.I1155L					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		GGAAAATTACATAAAAGAGGA	0.308													10	21					0	0	0.000673444	0	0
MSTN	2660	broad.mit.edu	37	2	190922196	190922196	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:190922196C>T	uc002urp.2	-	3	1049	c.916G>A	c.(916-918)GCC>ACC	p.A306T		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	306					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			CAGTAATTGGCCTTATATCTT	0.423													31	28					0	0	0.001512	0	0
ALS2CR12	130540	broad.mit.edu	37	2	202172265	202172265	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:202172265C>G	uc010ftg.2	-	11	1300	c.856G>C	c.(856-858)GAG>CAG	p.E286Q	ALS2CR12_uc002uya.3_Missense_Mutation_p.E286Q|ALS2CR12_uc010fth.2_RNA	NM_139163	NP_631902	Q96Q35	AL2SB_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	286	Potential.				regulation of GTPase activity		protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						ATGAAGTTCTCAAAGACAGCA	0.438													42	176					0	0	0.000781405	0	0
KIF1A	547	broad.mit.edu	37	2	241661280	241661280	+	Missense_Mutation	SNP	T	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:241661280T>C	uc002vzy.2	-	42	4530	c.4384A>G	c.(4384-4386)ACA>GCA	p.T1462A	KIF1A_uc010fzk.2_Missense_Mutation_p.T1563A|KIF1A_uc002vzw.2_Missense_Mutation_p.T123A|KIF1A_uc002vzx.2_Missense_Mutation_p.T189A	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1462					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CTGTTGAATGTGTGCGTGAGC	0.657													7	3					0	0	0.00198382	0	0
C20orf46	55321	broad.mit.edu	37	20	1161561	1161561	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr20:1161561C>T	uc010gaa.1	-	3	921	c.702G>A	c.(700-702)GGG>GGA	p.G234G	C20orf46_uc002weq.1_Silent_p.G234G	NM_018354	NP_060824	Q9NUR3	CT046_HUMAN	hypothetical protein LOC55321	234						integral to membrane	protein binding			ovary(1)	1						GGGCCTGGCCCCCATCCCCAT	0.592													8	75					0	0	0.000978159	0	0
CHD6	84181	broad.mit.edu	37	20	40033767	40033767	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr20:40033767G>A	uc002xka.1	-	37	7792	c.7614C>T	c.(7612-7614)CTC>CTT	p.L2538L	CHD6_uc002xjz.1_Silent_p.L75L	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2538					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TGGGTGGACTGAGGAGTCCCC	0.557													19	110					0	0	0.00121646	0	0
CHD6	84181	broad.mit.edu	37	20	40050320	40050320	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr20:40050320G>A	uc002xka.1	-	31	5133	c.4955C>T	c.(4954-4956)TCA>TTA	p.S1652L		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1652					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AAGGGACTCTGAAGTCCTACT	0.398													14	53					0	0	0.000308642	0	0
PTPN1	5770	broad.mit.edu	37	20	49195155	49195155	+	Missense_Mutation	SNP	T	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr20:49195155T>G	uc002xvl.2	+	6	865	c.691T>G	c.(691-693)TGC>GGC	p.C231G	PTPN1_uc010zys.1_Missense_Mutation_p.C158G	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	231	Tyrosine-protein phosphatase.				blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	GGCTGATACCTGCCTCTTGCT	0.597													15	34					0	0	0.000308642	0	0
HRH3	11255	broad.mit.edu	37	20	60791561	60791561	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr20:60791561G>A	uc002ycf.2	-	3	1136	c.839C>T	c.(838-840)GCG>GTG	p.A280V	HRH3_uc002ycg.2_Intron|HRH3_uc002ych.2_Intron|HRH3_uc002yci.2_Missense_Mutation_p.A280V	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	280	Cytoplasmic (Potential).		A -> V (in one Shy-Drager syndrome patient; rare variant with unknown pathological significance).		G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	GCCTACGGCCGCCTCACCCAC	0.756													5	3					0	0	0.00198382	0	0
DIP2A	23181	broad.mit.edu	37	21	47978259	47978259	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr21:47978259G>A	uc002zjo.2	+	32	4105	c.3922G>A	c.(3922-3924)GTA>ATA	p.V1308I	DIP2A_uc011afz.1_Missense_Mutation_p.V1304I|DIP2A_uc002zjr.2_Missense_Mutation_p.V275I|DIP2A_uc002zjs.2_5'Flank	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	1308					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		GGCCCGCGCCGTAAGCACCAC	0.657													5	10					0	0	0.00198382	0	0
SERPIND1	3053	broad.mit.edu	37	22	21140297	21140297	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr22:21140297G>A	uc002ztb.1	+	4	1236	c.1169G>A	c.(1168-1170)CGA>CAA	p.R390Q	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.R418Q	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	390					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TCTAGAACTCGAGAAGTGCTT	0.423													18	137					0	0	0.000566183	0	0
SERPIND1	3053	broad.mit.edu	37	22	21140328	21140328	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr22:21140328G>A	uc002ztb.1	+	4	1267	c.1200G>A	c.(1198-1200)GAG>GAA	p.E400E	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Silent_p.E428E	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	400					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	TCAAGCTGGAGAAGAACTACA	0.448													20	143					0	0	0.00152264	0	0
SEZ6L	23544	broad.mit.edu	37	22	26702084	26702084	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr22:26702084G>A	uc003acb.2	+	6	1644	c.1488G>A	c.(1486-1488)GAG>GAA	p.E496E	SEZ6L_uc003acc.2_Silent_p.E496E|SEZ6L_uc011akc.1_Silent_p.E496E|SEZ6L_uc003acd.2_Silent_p.E496E|SEZ6L_uc011akd.1_Silent_p.E496E|SEZ6L_uc003ace.2_Silent_p.E496E|SEZ6L_uc003acf.1_Silent_p.E269E|SEZ6L_uc010gvc.1_Silent_p.E269E	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	496	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						TGCACTTTGAGAGGCTGTTGC	0.517													5	63					0	0	0.000602214	0	0
MCM5	4174	broad.mit.edu	37	22	35806777	35806777	+	Missense_Mutation	SNP	A	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr22:35806777A>G	uc003anu.3	+	7	887	c.793A>G	c.(793-795)ATC>GTC	p.I265V	MCM5_uc010gwr.2_Missense_Mutation_p.I74V|MCM5_uc003anv.3_Missense_Mutation_p.I222V|MCM5_uc010gws.1_RNA|MCM5_uc003anw.1_Missense_Mutation_p.I49V	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	265					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CAGGGTTACCATCATGGGCAT	0.557													43	90					0	0	0.000781405	0	0
MYH9	4627	broad.mit.edu	37	22	36696256	36696256	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr22:36696256C>G	uc003apg.2	-	23	3124	c.2893G>C	c.(2893-2895)GAG>CAG	p.E965Q	MYH9_uc003aph.1_Missense_Mutation_p.E829Q	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	965	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GTCACCTTCTCCAGCTGCAGC	0.632			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				38	48					0	0	0.00148497	0	0
HDAC10	83933	broad.mit.edu	37	22	50687534	50687534	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr22:50687534C>G	uc003bkg.2	-	8	1127	c.754G>C	c.(754-756)GAG>CAG	p.E252Q	HDAC10_uc003bke.2_5'UTR|HDAC10_uc003bkf.2_5'UTR|HDAC10_uc010hav.2_Missense_Mutation_p.E252Q|HDAC10_uc003bkh.2_Missense_Mutation_p.L80F|HDAC10_uc003bki.2_Missense_Mutation_p.E252Q|HDAC10_uc003bkj.2_Intron|HDAC10_uc003bkk.1_5'Flank	NM_032019	NP_114408	Q969S8	HDA10_HUMAN	histone deacetylase 10 isoform 1	252	Histone deacetylase.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|nucleus	histone deacetylase activity|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCAGTCACCTCAAAGGCCAGT	0.622													7	7					0	0	0.000274275	0	0
SEMA3F	6405	broad.mit.edu	37	3	50220896	50220896	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:50220896G>C	uc003cyj.2	+	12	1330	c.1132G>C	c.(1132-1134)GAT>CAT	p.D378H	SEMA3F_uc003cyk.2_Missense_Mutation_p.D347H	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	378	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		CTCCATGGCTGATATTCGCAT	0.632													7	52					0	0	0.00198382	0	0
CCDC80	151887	broad.mit.edu	37	3	112324296	112324296	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:112324296G>A	uc003dzf.2	-	8	3039	c.2821C>T	c.(2821-2823)CAT>TAT	p.H941Y	CCDC80_uc011bhv.1_Missense_Mutation_p.H914Y|CCDC80_uc003dzg.2_Missense_Mutation_p.H941Y	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	941										ovary(2)	2						TAACTCTCATGATGACGGTAG	0.483													21	59					0	0	0.00278032	0	0
KALRN	8997	broad.mit.edu	37	3	124103778	124103778	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:124103778G>C	uc003ehg.2	+	11	1978	c.1851G>C	c.(1849-1851)AAG>AAC	p.K617N	KALRN_uc010hrv.1_Missense_Mutation_p.K617N|KALRN_uc003ehf.1_Missense_Mutation_p.K617N|KALRN_uc011bjy.1_Missense_Mutation_p.K617N|KALRN_uc003ehh.1_5'UTR	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	617	Spectrin 3.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGATCTACAAGGCAGCTCGAC	0.567													35	36					0	0	0.00058488	0	0
TTC14	151613	broad.mit.edu	37	3	180324303	180324303	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:180324303G>C	uc003fkk.2	+	9	1216	c.1084G>C	c.(1084-1086)GAA>CAA	p.E362Q	TTC14_uc003fkl.2_Missense_Mutation_p.E362Q|TTC14_uc003fkm.2_Missense_Mutation_p.E362Q	NM_133462	NP_597719	Q96N46	TTC14_HUMAN	tetratricopeptide repeat domain 14 isoform a	362	TPR 3.						RNA binding			ovary(1)	1	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			CAAAGCAATAGAAGATTTTGA	0.383													105	81					0	0	0.000781405	0	0
CCDC39	339829	broad.mit.edu	37	3	180337752	180337752	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:180337752G>C	uc010hxe.2	-	15	2120	c.2005C>G	c.(2005-2007)CAA>GAA	p.Q669E	CCDC39_uc003fkn.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	669	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TCTTTTTCTTGAGCAGCCTAT	0.383													7	39					0	0	0.000274275	0	0
C3orf59	151963	broad.mit.edu	37	3	192516239	192516239	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:192516239G>C	uc011bsp.1	-	2	1733	c.1412C>G	c.(1411-1413)TCT>TGT	p.S471C		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	471											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		GATAAAGACAGAGATTGACTT	0.453													5	175					0	0	0.000602214	0	0
PDE6B	5158	broad.mit.edu	37	4	619524	619524	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:619524G>A	uc003gap.2	+	1	162	c.109G>A	c.(109-111)GAG>AAG	p.E37K	PDE6B_uc003gao.3_Missense_Mutation_p.E37K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	37					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CGCGGCCTGCGAGGACGGGTG	0.488													14	43					0	0	0.00244969	0	0
FGFR3	2261	broad.mit.edu	37	4	1806099	1806099	+	Missense_Mutation	SNP	A	G	G	rs121913485		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:1806099A>G	uc003gdr.3	+	9	1374	c.1118A>G	c.(1117-1119)TAT>TGT	p.Y373C	FGFR3_uc003gdu.2_Missense_Mutation_p.Y375C|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Missense_Mutation_p.Y373C	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	373	Extracellular (Potential).		Y -> C (in KERSEB and TD1).		bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.Y373C(437)		urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	GGCAGTGTGTATGCAGGCATC	0.682	Y373C(KMS11_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				138	23					0	0	0.000781405	0	0
FGFR3	2261	broad.mit.edu	37	4	1807891	1807891	+	Missense_Mutation	SNP	G	C	C	rs28928868		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:1807891G>C	uc003gdr.3	+	14	2206	c.1950G>C	c.(1948-1950)AAG>AAC	p.K650N	FGFR3_uc003gdu.2_Missense_Mutation_p.K652N|FGFR3_uc003gds.3_Missense_Mutation_p.K538N|FGFR3_uc003gdq.3_Missense_Mutation_p.K651N	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	650	Protein kinase.|Cytoplasmic (Potential).		K -> E (in KERSEB, TD2 and bladder cancer samples; bladder transitional cell carcinoma; somatic mutation).|K -> Q (in hypochondroplasia and bladder cancer; in hypochondroplasia the form is milder than that seen in individuals with the K-540 or M-650 mutations).|K -> M (in KERSEB, ACH and TD1).		bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.K650M(76)|p.K650E(71)|p.K650Q(5)|p.K650T(5)|p.K650N(1)		urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	ACTACAAGAAGACGACCAACG	0.662		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				13	1					0	0	0.00244969	0	0
FGFR3	2261	broad.mit.edu	37	4	1808562	1808562	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:1808562G>A	uc003gdr.3	+	17	2431	c.2175G>A	c.(2173-2175)ATG>ATA	p.M725I	FGFR3_uc003gdu.2_Missense_Mutation_p.M727I|FGFR3_uc003gds.3_Missense_Mutation_p.M613I|FGFR3_uc003gdq.3_Missense_Mutation_p.D703N	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	725	Protein kinase.|Cytoplasmic (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	GCAGGTACATGATCATGCGGG	0.687		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				9	2					0	0	0.000442599	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6052355	6052355	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:6052355C>T	uc010idb.1	-	14	2344	c.1858G>A	c.(1858-1860)GAG>AAG	p.E620K	JAKMIP1_uc010idc.1_Missense_Mutation_p.E435K|JAKMIP1_uc010idd.1_Intron	NM_001099433	NP_001092903	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	392	Mediates interaction with TYK2 and GABBR1.|Potential.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CTGTGGTTCTCGGGGAAGGTG	0.542													4	3					0	0	0.00198382	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23830149	23830149	+	Missense_Mutation	SNP	G	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:23830149G>T	uc003gqs.2	-	5	751	c.631C>A	c.(631-633)CTC>ATC	p.L211I	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	211					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				AGATATTTGAGAAGCTCCGAG	0.443													55	103					1.93748e-29	1.56797e-28	0.000781405	1	0
HOPX	84525	broad.mit.edu	37	4	57514941	57514941	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:57514941G>A	uc011cad.1	-	3	402	c.167C>T	c.(166-168)GCA>GTA	p.A56V	HOPX_uc003hcc.2_3'UTR|HOPX_uc003hca.2_Missense_Mutation_p.A74V|HOPX_uc003hcb.2_Missense_Mutation_p.A56V|HOPX_uc003hcd.2_RNA|HOPX_uc003hce.2_RNA|HOPX_uc003hbz.2_Missense_Mutation_p.A56V	NM_001145459	NP_001138931	Q9BPY8	HOP_HUMAN	HOP homeobox isoform b	56	Homeobox; atypical.				negative regulation of cell differentiation|trophectodermal cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Glioma(25;0.08)|all_neural(26;0.101)					CCGCCACTTTGCCAGGCGCTG	0.478													49	60					0	0	0.000781405	0	0
PLK4	10733	broad.mit.edu	37	4	128813651	128813651	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:128813651G>C	uc003ifo.2	+	10	2415	c.2170G>C	c.(2170-2172)GAG>CAG	p.E724Q	PLK4_uc011cgs.1_Missense_Mutation_p.E692Q|PLK4_uc011cgt.1_Missense_Mutation_p.E683Q	NM_014264	NP_055079	O00444	PLK4_HUMAN	polo-like kinase 4	724					G2/M transition of mitotic cell cycle|positive regulation of centriole replication|trophoblast giant cell differentiation	centriole|cleavage furrow|cytosol|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						TGCTGATTTTGAGGTTTGGTT	0.318													7	34					0	0	0.00198382	0	0
FGA	2243	broad.mit.edu	37	4	155505888	155505888	+	Silent	SNP	G	A	A	rs142544370	byFrequency	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr4:155505888G>A	uc003iod.1	-	6	2047	c.1989C>T	c.(1987-1989)TGC>TGT	p.C663C		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	663	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TCTCTTGATCGCAATAAACAG	0.433													12	30					0	0	0.00185496	0	0
MAP1B	4131	broad.mit.edu	37	5	71495628	71495628	+	Nonsense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:71495628C>G	uc003kbw.3	+	5	6687	c.6446C>G	c.(6445-6447)TCA>TGA	p.S2149*	MAP1B_uc010iyw.1_Nonsense_Mutation_p.S2166*|MAP1B_uc010iyx.1_Nonsense_Mutation_p.S2023*|MAP1B_uc010iyy.1_Nonsense_Mutation_p.S2023*	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2149						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CCTCCCACCTCAGTCAGCGAG	0.587													7	54					0	0	0.000157383	0	0
CMYA5	202333	broad.mit.edu	37	5	79027353	79027353	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:79027353C>T	uc003kgc.2	+	2	2837	c.2765C>T	c.(2764-2766)TCT>TTT	p.S922F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	922						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GTCCATAGATCTCTAAATCTA	0.413													44	38					0	0	0.0025221	0	0
CMYA5	202333	broad.mit.edu	37	5	79030983	79030983	+	Missense_Mutation	SNP	G	C	C	rs79193094		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:79030983G>C	uc003kgc.2	+	2	6467	c.6395G>C	c.(6394-6396)AGA>ACA	p.R2132T		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2132						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCCACACAAAGAAAACCCATC	0.448													30	39					0	0	0.0024448	0	0
CMYA5	202333	broad.mit.edu	37	5	79031337	79031337	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:79031337G>A	uc003kgc.2	+	2	6821	c.6749G>A	c.(6748-6750)AGA>AAA	p.R2250K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2250						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GATGAACCCAGAGGTACTTTA	0.343													68	55					0	0	0.000781405	0	0
CMYA5	202333	broad.mit.edu	37	5	79031882	79031882	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:79031882G>C	uc003kgc.2	+	2	7366	c.7294G>C	c.(7294-7296)GAA>CAA	p.E2432Q		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2432						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ACTCAAGAAAGAAATGCAAAA	0.333													23	27					0	0	0.00188189	0	0
CMYA5	202333	broad.mit.edu	37	5	79032579	79032579	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:79032579G>A	uc003kgc.2	+	2	8063	c.7991G>A	c.(7990-7992)AGA>AAA	p.R2664K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2664						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AAGTCAAGCAGAGATATGCCA	0.403													22	20					0	0	0.00229938	0	0
VCAN	1462	broad.mit.edu	37	5	82786054	82786054	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:82786054G>T	uc003kii.3	+	3	564	c.208G>T	c.(208-210)GAA>TAA	p.E70*	VCAN_uc003kij.3_Nonsense_Mutation_p.E70*|VCAN_uc010jau.2_Nonsense_Mutation_p.E70*|VCAN_uc003kik.3_Nonsense_Mutation_p.E70*|VCAN_uc003kih.3_Nonsense_Mutation_p.E70*	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	70	Ig-like V-type.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		GTCTAAGATTGAAGTGGACAA	0.418													22	64					7.41877e-09	5.85564e-08	0.00188189	1	0
VCAN	1462	broad.mit.edu	37	5	82817031	82817031	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:82817031C>G	uc003kii.3	+	7	3262	c.2906C>G	c.(2905-2907)TCT>TGT	p.S969C	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.S969C|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	969	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TATGTAGACTCTTCCCATACC	0.433													7	74					0	0	0.000274275	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140856910	140856910	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:140856910G>A	uc003lkv.1	+	1	1342	c.1227G>A	c.(1225-1227)TTG>TTA	p.L409L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Silent_p.L409L|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	409	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTTCACTTTGAAAACCAGTG	0.552													10	41					0	0	0.00185496	0	0
GRIA1	2890	broad.mit.edu	37	5	153078520	153078520	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:153078520G>C	uc003lva.3	+	10	1704	c.1339G>C	c.(1339-1341)GCC>CCC	p.A447P	GRIA1_uc003luy.3_Missense_Mutation_p.A447P|GRIA1_uc003luz.3_Missense_Mutation_p.A352P|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.A367P|GRIA1_uc011dcx.1_Missense_Mutation_p.A378P|GRIA1_uc011dcy.1_Missense_Mutation_p.A457P|GRIA1_uc011dcz.1_Missense_Mutation_p.A457P|GRIA1_uc010jia.1_Missense_Mutation_p.A427P	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	447	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GGCAGAGATTGCCAAGCACGT	0.537													15	48					0	0	0.000308642	0	0
SGCD	6444	broad.mit.edu	37	5	156186311	156186311	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:156186311C>T	uc003lwd.3	+	8	1256	c.780C>T	c.(778-780)TTC>TTT	p.F260F	SGCD_uc003lwc.3_Silent_p.F261F	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	260	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGAAGGTCTTCGAGATCTGCG	0.488													37	75					0	0	0.00128727	0	0
FAF2	23197	broad.mit.edu	37	5	175875413	175875413	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr5:175875413C>T	uc003mej.3	+	1	58	c.5C>T	c.(4-6)GCG>GTG	p.A2V		NM_014613	NP_055428	Q96CS3	FAF2_HUMAN	UBX domain containing 8	2					response to unfolded protein	endoplasmic reticulum|lipid particle	protein binding			ovary(1)	1						GGCAAAATGGCGGCGCCTGAG	0.652											OREG0017076	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	6					0	0	0.000602214	0	0
HLA-A	3105	broad.mit.edu	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	G	G	rs41559716		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:29910693A>G	uc003nol.2	+	2	233	c.233A>G	c.(232-234)CAG>CGG	p.Q78R	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Missense_Mutation_p.Q78R|HLA-A_uc003noo.2_Missense_Mutation_p.Q78R|HLA-A_uc010jrr.2_Missense_Mutation_p.Q78R|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Missense_Mutation_p.Q50R|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	78	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGGATAGAGCAGGAGGGGCCG	0.657									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			4	9					0	0	0.00116845	0	0
HLA-B	3106	broad.mit.edu	37	6	31324628	31324628	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:31324628G>A	uc003nth.2	-	2	234	c.180C>T	c.(178-180)TTC>TTT	p.F60F	HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Silent_p.F60F|HLA-B_uc003ntg.1_5'Flank|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_5'Flank|HLA-B_uc010jso.2_Silent_p.F32F	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	60	Alpha-1.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						CGTCGCTGTCGAACCTCACGA	0.652									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				7	5					0	0	0.00198382	0	0
CUL7	9820	broad.mit.edu	37	6	43008726	43008726	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:43008726G>A	uc003otq.2	-	20	4036	c.3733C>T	c.(3733-3735)CTG>TTG	p.L1245L	CUL7_uc010jyg.2_Silent_p.L524L|CUL7_uc011dvb.1_Silent_p.L1329L|CUL7_uc010jyh.2_Silent_p.L238L|KLC4_uc003otr.1_RNA	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1245					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CATTGCTGCAGCTGTGCCAGC	0.572													3	7					0	0	0.00024832	0	0
TJAP1	93643	broad.mit.edu	37	6	43468508	43468508	+	Missense_Mutation	SNP	G	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:43468508G>T	uc003ovd.2	+	5	502	c.126G>T	c.(124-126)ATG>ATT	p.M42I	TJAP1_uc003ovf.2_Missense_Mutation_p.M42I|TJAP1_uc003ove.2_Missense_Mutation_p.M42I|TJAP1_uc003ovc.2_Missense_Mutation_p.M42I|TJAP1_uc010jyp.2_Missense_Mutation_p.M1I|TJAP1_uc011dvh.1_Missense_Mutation_p.M42I|TJAP1_uc003ovg.2_5'UTR|TJAP1_uc010jyq.2_Missense_Mutation_p.M42I|TJAP1_uc011dvi.1_Missense_Mutation_p.M42I|TJAP1_uc011dvj.1_5'Flank|TJAP1_uc003ovi.2_5'Flank	NM_001146016	NP_001139488	Q5JTD0	TJAP1_HUMAN	tight junction associated protein 1 isoform a	42	Potential.					Golgi apparatus|tight junction	protein binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0122)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CAGAAAGGATGAAGTGAGTAT	0.537													50	17					2.43277e-16	1.95232e-15	0.000781405	1	0
SYNE1	23345	broad.mit.edu	37	6	152557320	152557320	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:152557320C>T	uc010kiw.2	-	110	20920	c.20318G>A	c.(20317-20319)GGA>GAA	p.G6773E	SYNE1_uc010kiv.2_Missense_Mutation_p.G1297E|SYNE1_uc003qos.3_Missense_Mutation_p.G1297E|SYNE1_uc003qot.3_Missense_Mutation_p.G6702E|SYNE1_uc003qou.3_Missense_Mutation_p.G6773E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6773	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCAGCACTCTCCAAGTTGATT	0.373										HNSCC(10;0.0054)			49	22					0	0	0.000781405	0	0
SYNE1	23345	broad.mit.edu	37	6	152560730	152560730	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:152560730G>C	uc010kiw.2	-	108	20607	c.20005C>G	c.(20005-20007)CAG>GAG	p.Q6669E	SYNE1_uc010kiv.2_Missense_Mutation_p.Q1193E|SYNE1_uc003qos.3_Missense_Mutation_p.Q1193E|SYNE1_uc003qot.3_Missense_Mutation_p.Q6598E|SYNE1_uc003qou.3_Missense_Mutation_p.Q6669E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6669	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		GCAGAAGCCTGAGCCATCAGC	0.468										HNSCC(10;0.0054)			40	10					0	0	0.00170553	0	0
SYNE1	23345	broad.mit.edu	37	6	152730280	152730280	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:152730280C>T	uc010kiw.2	-	44	7065	c.6463G>A	c.(6463-6465)GAG>AAG	p.E2155K	SYNE1_uc003qot.3_Missense_Mutation_p.E2162K|SYNE1_uc003qou.3_Missense_Mutation_p.E2155K|SYNE1_uc010kjb.1_Missense_Mutation_p.E2138K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2155	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTCTTCAGCTCAGATAACAAG	0.383										HNSCC(10;0.0054)			40	8					0	0	0.00170553	0	0
MLLT4	4301	broad.mit.edu	37	6	168347543	168347543	+	Missense_Mutation	SNP	A	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:168347543A>C	uc003qwd.2	+	26	3633	c.3491A>C	c.(3490-3492)AAA>ACA	p.K1164T	MLLT4_uc003qwb.1_Missense_Mutation_p.K1149T|MLLT4_uc003qwc.1_Missense_Mutation_p.K1165T|MLLT4_uc003qwg.1_Missense_Mutation_p.K474T	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1165					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		AGACTGATGAAAAATAGAGCT	0.433			T	MLL	AL								47	11					0	0	0.000781405	0	0
FRMD1	79981	broad.mit.edu	37	6	168457843	168457843	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr6:168457843C>G	uc003qwo.3	-	11	1649	c.1584G>C	c.(1582-1584)AAG>AAC	p.K528N	FRMD1_uc003qwm.3_Missense_Mutation_p.K322N|FRMD1_uc011egs.1_Missense_Mutation_p.K299N|FRMD1_uc011egt.1_Missense_Mutation_p.K463N|FRMD1_uc003qwn.3_Missense_Mutation_p.K460N	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	528						cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		TGCTGGACCTCTTGCTGGGGA	0.672													5	1					0	0	0.00198382	0	0
PHTF2	57157	broad.mit.edu	37	7	77539715	77539715	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr7:77539715C>G	uc003ugs.3	+	8	891	c.765C>G	c.(763-765)TTC>TTG	p.F255L	PHTF2_uc003ugo.3_Missense_Mutation_p.F217L|PHTF2_uc003ugp.2_Missense_Mutation_p.F217L|PHTF2_uc003ugq.3_Missense_Mutation_p.F217L|PHTF2_uc010ldv.2_Missense_Mutation_p.F217L|PHTF2_uc003ugr.3_Missense_Mutation_p.F221L|PHTF2_uc003ugt.3_Missense_Mutation_p.F221L|PHTF2_uc003ugu.3_Missense_Mutation_p.F217L|PHTF2_uc003ugv.2_Missense_Mutation_p.F80L|PHTF2_uc010ldw.1_Missense_Mutation_p.F80L	NM_001127357	NP_001120829	Q8N3S3	PHTF2_HUMAN	putative homeodomain transcription factor 2	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum|nucleus	DNA binding			ovary(1)	1						ATGCTGCTTTCTTTTTATCAG	0.413													7	37					0	0	0.00198382	0	0
MAGI2	9863	broad.mit.edu	37	7	77885410	77885410	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr7:77885410C>G	uc003ugx.2	-	10	2151	c.1897G>C	c.(1897-1899)GAC>CAC	p.D633H	MAGI2_uc003ugy.2_Missense_Mutation_p.D633H|MAGI2_uc010ldx.1_Missense_Mutation_p.D242H|MAGI2_uc010ldy.1_Missense_Mutation_p.D242H|MAGI2_uc011kgr.1_Missense_Mutation_p.D465H|MAGI2_uc011kgs.1_Missense_Mutation_p.D470H	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	633	PDZ 3.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				CCCTGAATGTCAAGTATTTGT	0.488													5	32					0	0	0.000602214	0	0
COL1A2	1278	broad.mit.edu	37	7	94035021	94035021	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr7:94035021G>A	uc003ung.1	+	11	994	c.523G>A	c.(523-525)GGC>AGC	p.G175S	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfh.1_RNA	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	175					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TGGACTTCCTGGCTTCAAAGG	0.373										HNSCC(75;0.22)			42	163					0	0	0.000781405	0	0
TFR2	7036	broad.mit.edu	37	7	100239125	100239125	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr7:100239125C>T	uc003uvv.1	-	1	49	c.8G>A	c.(7-9)CGG>CAG	p.R3Q	TFR2_uc003uvw.1_Missense_Mutation_p.R3Q	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	3	Cytoplasmic (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACCCCAAAGCCGCTCCATGCT	0.587													5	27					0	0	0.000602214	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175820	143175820	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr7:143175820C>T	uc003wdc.1	+	1	855	c.855C>T	c.(853-855)TTC>TTT	p.F285F	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	285	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					TCCTCATCTTCAGCAACCTCA	0.502													14	61					0	0	0.00185496	0	0
ATG9B	285973	broad.mit.edu	37	7	150720230	150720230	+	Silent	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr7:150720230G>A	uc011kvc.1	-	4	799	c.723C>T	c.(721-723)CTC>CTT	p.L241L	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	241	Lumenal (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGTTGGCAAAGAGAACATTGT	0.532													53	238					0	0	0.000781405	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163187	163187	+	RNA	SNP	T	C	C	rs143599805	by1000genomes	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr8:163187T>C	uc010lra.2	-	4		c.946A>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TGAAAAACATTATTCTTTTAT	0.209													3	29					0	0	6.4e-05	0	0
RP1L1	94137	broad.mit.edu	37	8	10468873	10468873	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr8:10468873C>T	uc003wtc.2	-	4	2964	c.2735G>A	c.(2734-2736)AGT>AAT	p.S912N		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	912					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTGGCTGGCACTGCTTCTCCT	0.716													5	10					0	0	0.000602214	0	0
EBF2	64641	broad.mit.edu	37	8	25890622	25890622	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr8:25890622G>C	uc003xes.1	-	6	547	c.530C>G	c.(529-531)TCG>TGG	p.S177W	PPP2R2A_uc003xek.2_Intron|EBF2_uc003xet.1_Missense_Mutation_p.S177W	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	177					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		GACTGGGTCCGATGGAGTCTC	0.388													15	100					0	0	0.000958276	0	0
MATN2	4147	broad.mit.edu	37	8	99019720	99019720	+	Silent	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr8:99019720C>T	uc003yic.2	+	10	1695	c.1464C>T	c.(1462-1464)TGC>TGT	p.C488C	MATN2_uc010mbh.1_Silent_p.C447C|MATN2_uc003yid.2_Silent_p.C488C|MATN2_uc003yie.1_Silent_p.C488C|MATN2_uc010mbi.1_Silent_p.C321C|MATN2_uc010mbj.1_5'UTR	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	488	EGF-like 7.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			TGGATTACTGCCTGCTGAGTG	0.547													23	36					0	0	0.000586117	0	0
TG	7038	broad.mit.edu	37	8	133945814	133945814	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr8:133945814G>A	uc003ytw.2	+	24	4866	c.4825G>A	c.(4825-4827)GAG>AAG	p.E1609K	TG_uc010mdw.2_Missense_Mutation_p.E368K|TG_uc011ljb.1_Missense_Mutation_p.E42K	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1609	Type IIIA.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGATTGCACAGAGGACGAGGC	0.582													11	83					0	0	0.000978159	0	0
BAI1	575	broad.mit.edu	37	8	143603450	143603450	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr8:143603450G>A	uc003ywm.2	+	20	3332	c.3149G>A	c.(3148-3150)CGC>CAC	p.R1050H		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1050	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CGCCTCATCCGCAAGCGCTTC	0.652													24	34					0	0	0.00127121	0	0
FRMPD1	22844	broad.mit.edu	37	9	37729833	37729833	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr9:37729833G>A	uc004aag.1	+	8	765	c.721G>A	c.(721-723)GAG>AAG	p.E241K	FRMPD1_uc004aah.1_Missense_Mutation_p.E241K|FRMPD1_uc011lqm.1_Missense_Mutation_p.E63K|FRMPD1_uc011lqn.1_Missense_Mutation_p.E110K	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	241	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GCTGCACGAAGAGGAACTCAT	0.602													30	8					0	0	0.00178596	0	0
TRPM3	80036	broad.mit.edu	37	9	73151243	73151243	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr9:73151243G>C	uc004aid.2	-	25	4994	c.4750C>G	c.(4750-4752)CCA>GCA	p.P1584A	TRPM3_uc004ahu.2_Missense_Mutation_p.P1426A|TRPM3_uc004ahv.2_Missense_Mutation_p.P1386A|TRPM3_uc004ahw.2_Missense_Mutation_p.P1456A|TRPM3_uc004ahx.2_Missense_Mutation_p.P1443A|TRPM3_uc004ahy.2_Missense_Mutation_p.P1446A|TRPM3_uc004ahz.2_Missense_Mutation_p.P1433A|TRPM3_uc004aia.2_Missense_Mutation_p.P1431A|TRPM3_uc004aib.2_Missense_Mutation_p.P1421A|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1609	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						TCTCGCTCTGGATGGCAGCAA	0.542													58	24					0	0	0.000781405	0	0
C5	727	broad.mit.edu	37	9	123783919	123783919	+	Silent	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr9:123783919C>G	uc004bkv.2	-	11	1200	c.1170G>C	c.(1168-1170)CTG>CTC	p.L390L	C5_uc010mvm.1_Silent_p.L390L|C5_uc010mvn.1_Silent_p.L390L	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	390					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	TTTGTGCATTCAGTGTTACTG	0.403													3	43					0	0	0.000602214	0	0
DDX31	64794	broad.mit.edu	37	9	135545615	135545615	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr9:135545615G>C	uc004cbq.1	-	1	174	c.22C>G	c.(22-24)CAG>GAG	p.Q8E	DDX31_uc010mzu.1_Missense_Mutation_p.Q8E|DDX31_uc004cbr.1_Missense_Mutation_p.Q8E|DDX31_uc004cbs.1_Missense_Mutation_p.Q8E|GTF3C4_uc010mzv.2_5'Flank|GTF3C4_uc010mzw.2_5'Flank	NM_022779	NP_073616	Q9H8H2	DDX31_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 31	8						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(145;2.67e-06)|Epithelial(140;7.61e-05)		GAATGCCTCTGAGAAGCGAGA	0.622													12	6					0	0	0.00244969	0	0
KCNT1	57582	broad.mit.edu	37	9	138594186	138594186	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr9:138594186G>C	uc011mdq.1	+	1	156	c.82G>C	c.(82-84)GAG>CAG	p.E28Q	KCNT1_uc011mdr.1_5'UTR|KCNT1_uc010nbf.2_Missense_Mutation_p.E28Q|SOHLH1_uc010nbe.2_5'Flank|SOHLH1_uc004cgl.2_5'Flank	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	28						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		CCGGACCTTCGAGTTTGACGA	0.502													9	10					0	0	0.000274275	0	0
CLIC3	9022	broad.mit.edu	37	9	139890192	139890192	+	Missense_Mutation	SNP	C	G	G			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr9:139890192C>G	uc004ckj.1	-	2	80	c.51G>C	c.(49-51)GAG>GAC	p.E17D		NM_004669	NP_004660	O95833	CLIC3_HUMAN	chloride intracellular channel 3	17	GST N-terminal.|Required for insertion into the membrane (By similarity).				signal transduction	chloride channel complex|cytoplasm|nucleus	protein binding|voltage-gated chloride channel activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GACCCACGCTCTCCCCGTCCT	0.706													3	3					0	0	0.00024832	0	0
MAOB	4129	broad.mit.edu	37	X	43655117	43655117	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:43655117C>T	uc004dfz.3	-	7	813	c.637G>A	c.(637-639)GGA>AGA	p.G213R	MAOB_uc011mkx.1_Missense_Mutation_p.G197R|MAOB_uc011mky.1_Missense_Mutation_p.G197R	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	213	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	TGACCAGATCCGCCCACAAAT	0.458													42	67					0	0	0.00170553	0	0
KDM6A	7403	broad.mit.edu	37	X	44870205	44870205	+	Splice_Site	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:44870205G>C	uc004dge.3	+	5	760	c.385_splice	c.e5-1	p.N129_splice	KDM6A_uc010nhk.2_Splice_Site_p.N129_splice|KDM6A_uc011mkz.1_Splice_Site_p.N129_splice|KDM6A_uc011mla.1_Splice_Site_p.N129_splice|KDM6A_uc011mlb.1_Splice_Site_p.N129_splice|KDM6A_uc011mlc.1_Splice_Site	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide						histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.?(1)		kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						TTCCTTTACAGAATGCTGCCT	0.299			D|N|F|S		renal|oesophageal SCC|MM								26	29					0	0	0.000878237	0	0
HUWE1	10075	broad.mit.edu	37	X	53641559	53641559	+	Missense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:53641559C>T	uc004dsp.2	-	23	2599	c.2197G>A	c.(2197-2199)GAG>AAG	p.E733K		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	733					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TGTACTTCCTCTTCCTCCTCA	0.453													94	170					0	0	0.000781405	0	0
ERCC6L	54821	broad.mit.edu	37	X	71426809	71426809	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:71426809G>C	uc004eaq.1	-	2	1905	c.1808C>G	c.(1807-1809)TCA>TGA	p.S603*	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Nonsense_Mutation_p.S480*	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	603	Helicase C-terminal.				cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					TCTTATTAATGAGTCCTTGAA	0.348													9	133					0	0	0.000978159	0	0
PHKA1	5255	broad.mit.edu	37	X	71886083	71886083	+	Missense_Mutation	SNP	G	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:71886083G>A	uc004eax.3	-	8	1083	c.782C>T	c.(781-783)TCA>TTA	p.S261L	PHKA1_uc004eay.3_Missense_Mutation_p.S261L|PHKA1_uc011mqi.1_Missense_Mutation_p.S261L	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	261					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					GGAAACCACTGAGAGTAGACT	0.423													40	40					0	0	0.00170553	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971025	101971025	+	Missense_Mutation	SNP	G	C	C			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:101971025G>C	uc004ejk.2	+	4	2562	c.1228G>C	c.(1228-1230)GAG>CAG	p.E410Q	GPRASP2_uc004ejl.2_Missense_Mutation_p.E410Q|GPRASP2_uc004ejm.2_Missense_Mutation_p.E410Q|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	410						cytoplasm	protein binding			ovary(1)	1						CTGTGAATCTGAGCCAGGAAC	0.562													5	145					0	0	0.00198382	0	0
STAG2	10735	broad.mit.edu	37	X	123202456	123202456	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:123202456C>T	uc004etz.3	+	23	2647	c.2308C>T	c.(2308-2310)CAG>TAG	p.Q770*	STAG2_uc004eua.2_Nonsense_Mutation_p.Q770*|STAG2_uc004eub.2_Nonsense_Mutation_p.Q770*|STAG2_uc004euc.2_Nonsense_Mutation_p.Q770*|STAG2_uc004eud.2_Nonsense_Mutation_p.Q770*|STAG2_uc004eue.2_Nonsense_Mutation_p.Q770*	NM_006603	NP_006594	Q8N3U4	STAG2_HUMAN	stromal antigen 2 isoform b	770					cell division|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|negative regulation of DNA endoreduplication|sister chromatid cohesion	chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(4)|skin(1)	5						AGTATTTTGTCAGATATGTCA	0.284													44	90					0	0	0.000781405	0	0
ODZ1	10178	broad.mit.edu	37	X	123680889	123680889	+	Missense_Mutation	SNP	T	A	A			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:123680889T>A	uc004euj.2	-	15	2550	c.2486A>T	c.(2485-2487)TAT>TTT	p.Y829F	ODZ1_uc011muj.1_Missense_Mutation_p.Y828F|ODZ1_uc010nqy.2_Missense_Mutation_p.Y829F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	829	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGGACTTATATAACAGTTGCT	0.403													84	59					0	0	0.000781405	0	0
BMP8A	353500	broad.mit.edu	37	1	39991443	39991443	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:39991443delG	uc001cdi.2	+	7	1528	c.1182delG	c.(1180-1182)ATGfs	p.M394fs	PPIEL_uc001cdj.1_5'Flank|PPIEL_uc001cdk.2_Intron	NM_181809	NP_861525	Q7Z5Y6	BMP8A_HUMAN	bone morphogenetic protein 8A precursor	394					cartilage development|cell differentiation|growth|ossification	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(20;2.08e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;9.69e-19)|Epithelial(16;9.34e-17)|all cancers(16;1.73e-15)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACCGCAACATGGTGGTCAAGG	0.612													35	138	---	---	---	---					
TMEM48	55706	broad.mit.edu	37	1	54298190	54298192	+	In_Frame_Del	DEL	TTA	-	-			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:54298190_54298192delTTA	uc001cvs.2	-	3	492_494	c.251_253delTAA	c.(250-255)ATAAGT>AGT	p.I84del	TMEM48_uc010onu.1_In_Frame_Del_p.I84del|TMEM48_uc001cvt.2_5'UTR|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_5'UTR	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	84	Helical; Name=2; (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						TTGAAAATACTTATTATTATTAT	0.305													7	163	---	---	---	---					
TXNIP	10628	broad.mit.edu	37	1	145440057	145440059	+	In_Frame_Del	DEL	AAG	-	-			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr1:145440057_145440059delAAG	uc001enn.3	+	4	832_834	c.491_493delAAG	c.(490-495)AAAGAA>AAA	p.E165del	NBPF10_uc001emp.3_Intron|TXNIP_uc001enm.1_Intron|TXNIP_uc010oys.1_In_Frame_Del_p.E110del	NM_006472	NP_006463	Q9H3M7	TXNIP_HUMAN	thioredoxin interacting protein	165					cell cycle|keratinocyte differentiation|transcription, DNA-dependent		ubiquitin protein ligase binding			ovary(2)	2	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TCTGCTAAAAAAGAAAAGAAAGT	0.414													383	304	---	---	---	---					
MPRIP	23164	broad.mit.edu	37	17	17046031	17046031	+	Frame_Shift_Del	DEL	C	-	-	rs146439071		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:17046031delC	uc002gqu.1	+	8	1043	c.987delC	c.(985-987)AGCfs	p.S329fs	MPRIP_uc002gqv.1_Frame_Shift_Del_p.S329fs|MPRIP_uc002gqw.1_Frame_Shift_Del_p.S122fs	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	329	Interaction with F-actin (By similarity).					cytoplasm|cytoskeleton	actin binding				0						CACCATCCAGCGACACACGCC	0.632													16	40	---	---	---	---					
KIAA1267	284058	broad.mit.edu	37	17	44248974	44248974	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr17:44248974delC	uc002ikb.2	-	1	621	c.536delG	c.(535-537)GGAfs	p.G179fs	KIAA1267_uc002ikc.2_Frame_Shift_Del_p.G179fs|KIAA1267_uc002ikd.2_Frame_Shift_Del_p.G179fs|KIAA1267_uc010dav.2_Frame_Shift_Del_p.G179fs	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	179						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				AGCCCGTTTTCCCCCATTGAG	0.473													119	163	---	---	---	---					
CNGA3	1261	broad.mit.edu	37	2	99012521	99012522	+	Frame_Shift_Ins	INS	-	GT	GT			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr2:99012521_99012522insGT	uc002syt.2	+	8	1305_1306	c.888_889insGT	c.(886-891)AACTACfs	p.N296fs	CNGA3_uc002syu.2_Frame_Shift_Ins_p.N278fs|CNGA3_uc010fij.2_Frame_Shift_Ins_p.N300fs	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	296_297					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CAAGGACCAACTACCCCAATAT	0.450													20	71	---	---	---	---					
OXSM	54995	broad.mit.edu	37	3	25833175	25833175	+	Frame_Shift_Del	DEL	T	-	-			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chr3:25833175delT	uc003cdn.2	+	2	771	c.664delT	c.(664-666)TTTfs	p.F222fs	NGLY1_uc011awo.1_5'Flank|OXSM_uc011awp.1_Intron|OXSM_uc010hfh.2_Frame_Shift_Del_p.F222fs	NM_017897	NP_060367	Q9NWU1	OXSM_HUMAN	3-oxoacyl-ACP synthase, mitochondrial isoform 1	222					acyl-CoA metabolic process|medium-chain fatty acid biosynthetic process|short-chain fatty acid biosynthetic process	mitochondrion	3-oxoacyl-[acyl-carrier-protein] synthase activity			ovary(1)|breast(1)	2						CTCATTTAGATTTATAGCCCA	0.498													86	93	---	---	---	---					
KDM6A	7403	broad.mit.edu	37	X	44969446	44969447	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	g.chrX:44969446_44969447delAC	uc004dge.3	+	28	4503_4504	c.4128_4129delAC	c.(4126-4131)GAACAGfs	p.E1376fs	KDM6A_uc011mkz.1_Frame_Shift_Del_p.E1428fs|KDM6A_uc011mla.1_Frame_Shift_Del_p.E1331fs|KDM6A_uc011mlb.1_Frame_Shift_Del_p.E1383fs|KDM6A_uc011mlc.1_Frame_Shift_Del_p.E1080fs|KDM6A_uc011mld.1_Frame_Shift_Del_p.E1015fs	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	1376_1377					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						TGGTGCTAGAACAGTACAAAAT	0.386			D|N|F|S		renal|oesophageal SCC|MM								36	71	---	---	---	---					
