Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P9	11223	broad.mit.edu	37	1	17085791	17085791	+	Missense_Mutation	SNP	G	A	A	rs2297532	by1000genomes	TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr1:17085791G>A	uc010ock.1	-	8	1030	c.1030C>T	c.(1030-1032)CGT>TGT	p.R344C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'UTR	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TCTGTACAACGCCGGATCTGG	0.692000													4	12					0	0	0.150653	0	0
MST1P9	11223	broad.mit.edu	37	1	17086183	17086183	+	Splice_Site	SNP	T	G	G	rs61769735		TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr1:17086183T>G	uc010ock.1	-	7	716	c.716_splice	c.e7-1	p.G239_splice	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Splice_Site	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						CCTCGGACCCTTAGATGGACC	0.652000													5	6					0	0	0.058154	0	0
VANGL2	57216	broad.mit.edu	37	1	160389291	160389291	+	Missense_Mutation	SNP	A	G	G			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr1:160389291A>G	uc001fwb.1	+	5	991	c.692A>G	c.(691-693)TAC>TGC	p.Y231C	VANGL2_uc001fwc.1_Missense_Mutation_p.Y231C	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	231	Helical; Name=4; (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTCGTGCACTACCTGGCCGTG	0.647000													3	77					0	0	0.115264	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220387224	220387224	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr1:220387224C>T	uc010puk.1	-	3	442	c.278G>A	c.(277-279)CGA>CAA	p.R93Q	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_5'UTR|RAB3GAP2_uc010pum.1_Missense_Mutation_p.R93Q	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	93					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		TTTTTGCTCTCGAGCTATCAC	0.363000													23	58					0	0	0.091800	0	0
SVIL	6840	broad.mit.edu	37	10	29770516	29770516	+	Missense_Mutation	SNP	G	T	T			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr10:29770516G>T	uc001iut.1	-	28	5850	c.5097C>A	c.(5095-5097)CAC>CAA	p.H1699Q	LOC387647_uc001iup.2_Intron|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Missense_Mutation_p.H613Q|SVIL_uc001iuu.1_Missense_Mutation_p.H1273Q|SVIL_uc009xlc.2_Missense_Mutation_p.H491Q	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1699					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GGAATACCTTGTGCTGGGCAA	0.408000													189	365					1.35662e-99	1.99502e-99	0.139131	1	0
KIAA0317	9870	broad.mit.edu	37	14	75139816	75139816	+	Missense_Mutation	SNP	C	G	G			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr14:75139816C>G	uc001xqb.2	-	10	1769	c.1264G>C	c.(1264-1266)GCA>CCA	p.A422P	KIAA0317_uc010tut.1_Missense_Mutation_p.A261P|KIAA0317_uc001xqc.2_Missense_Mutation_p.A422P	NM_001039479	NP_001034568	O15033	K0317_HUMAN	hypothetical protein LOC9870	422					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane|intracellular	ubiquitin-protein ligase activity			ovary(2)|kidney(1)|central_nervous_system(1)|pancreas(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00404)		AAAGTGGCTGCTAGAATGTTC	0.512000													6	72					0	0	0.099896	0	0
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507000													3	47					0	0	0.115264	0	0
SLC7A9	11136	broad.mit.edu	37	19	33355655	33355655	+	Missense_Mutation	SNP	T	G	G			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr19:33355655T>G	uc002ntv.3	-	3	232	c.115A>C	c.(115-117)ATC>CTC	p.I39L	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Missense_Mutation_p.I39L|SLC7A9_uc002ntw.3_Intron	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	39	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	GTGCCCACGATGATGGAGATG	0.622000													75	60					0	0	0.139131	0	0
CIC	23152	broad.mit.edu	37	19	42791743	42791743	+	Missense_Mutation	SNP	T	G	G			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr19:42791743T>G	uc002otf.1	+	5	669	c.629T>G	c.(628-630)TTC>TGC	p.F210C		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	210	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				TTCATGATCTTCAGCAAGCGG	0.627000			T	DUX4	soft tissue sarcoma								39	38					0	0	0.124865	0	0
CIC	23152	broad.mit.edu	37	19	42799060	42799060	+	Missense_Mutation	SNP	G	A	A			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr19:42799060G>A	uc002otf.1	+	20	4584	c.4544G>A	c.(4543-4545)CGC>CAC	p.R1515H		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	1515					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				CGTGAGGTGCGCCAGAAGATC	0.498000			T	DUX4	soft tissue sarcoma								4	46					0	0	0.150653	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								46	72					0	0	0.139131	0	0
C20orf191	149934	broad.mit.edu	37	20	26084295	26084295	+	Missense_Mutation	SNP	C	T	T	rs76611503	by1000genomes	TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr20:26084295C>T	uc002wvj.3	-	2	176	c.121G>A	c.(121-123)GGA>AGA	p.G41R		NR_003678				SubName: Full=Putative uncharacterized protein ENSP00000323172;												0						TGTTTGCCTCCAAATGCTGGA	0.373000													4	86					0	0	0.150653	0	0
ARPC1B	10095	broad.mit.edu	37	7	98987611	98987611	+	Missense_Mutation	SNP	C	T	T			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr7:98987611C>T	uc003upz.2	+	5	565	c.476C>T	c.(475-477)GCC>GTC	p.A159V	ARPC1B_uc003uqa.2_Missense_Mutation_p.A159V|ARPC1B_uc003uqb.2_Missense_Mutation_p.A159V|ARPC1B_uc003uqc.2_Missense_Mutation_p.A159V|ARPC1B_uc003uqd.2_5'Flank	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	159	WD 4.				cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CTGCTGGCTGCCGGCTCCTGT	0.632000													4	168					0	0	0.014758	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325310	150325310	+	Missense_Mutation	SNP	C	T	T	rs138521615	byFrequency	TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr7:150325310C>T	uc003whn.2	-	3	800	c.376G>A	c.(376-378)GTG>ATG	p.V126M	GIMAP6_uc003whm.2_Missense_Mutation_p.V46M	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	126							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACCAGGAGCACGGCGTGGGGC	0.622000													40	81					0	0	0.111260	0	0
PARN	5073	broad.mit.edu	37	16	14680201	14680201	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr16:14680201delT	uc010uzd.1	-	14	1078	c.936delA	c.(934-936)AAAfs	p.K312fs	PARN_uc010uzc.1_Frame_Shift_Del_p.K251fs|PARN_uc010uze.1_Frame_Shift_Del_p.K266fs|PARN_uc010uzf.1_Frame_Shift_Del_p.K137fs	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	312					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						TTGTCATCTCTTTAAACTCAC	0.274													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9766012	9766013	+	RNA	INS	-	A	A			TCGA-DB-5278-01A-01D-1468-08	TCGA-DB-5278-10A-01D-1468-08									Somatic	Phase_I	Capture				Illumina GAIIx	6847e993-1414-4e6f-a2af-39ebe218dd7c	80b03480-5d28-481e-a447-59140d82f1f8	g.chr21:9766012_9766013insA	uc011abu.1	+	8		c.509_510insA								Homo sapiens, clone IMAGE:4720764, mRNA.																		ACAACTATCAGAAAATGTATGT	0.262													4	6	---	---	---	---					
