Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MRTO4	51154	broad.mit.edu	37	1	19583994	19583994	+	Missense_Mutation	SNP	G	A	A	rs114437725	byFrequency	TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:19583994G>A	uc001bbs.2	+	5	575	c.320G>A	c.(319-321)CGC>CAC	p.R107H		NM_016183	NP_057267	Q9UKD2	MRT4_HUMAN	mRNA turnover 4 homolog	107					ribosome biogenesis	nuclear membrane|nucleolus					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.87e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|GBM - Glioblastoma multiforme(114;0.00301)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TTCACCAACCGCACAAAGGAG	0.488000													4	136					0	0	0.014758	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527000													4	50					0	0	0.014758	0	0
BCL9	607	broad.mit.edu	37	1	147090735	147090735	+	Silent	SNP	A	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:147090735A>C	uc001epq.2	+	8	1514	c.774A>C	c.(772-774)CCA>CCC	p.P258P	BCL9_uc010ozr.1_Silent_p.P184P	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	258	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					AGCCAACTCCACCCATTCCGG	0.592000			T	IGH@|IGL@	B-ALL								7	56					0	0	0.058154	0	0
FLG	2312	broad.mit.edu	37	1	152278733	152278733	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:152278733G>T	uc001ezu.1	-	3	8665	c.8629C>A	c.(8629-8631)CAA>AAA	p.Q2877K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2877	Ser-rich.|Filaggrin 17.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCTCTGATTGTCCCTGGACT	0.577000									Ichthyosis				63	263					1.07576e-66	1.22472e-66	0.048971	1	0
CRNN	49860	broad.mit.edu	37	1	152382287	152382287	+	Missense_Mutation	SNP	C	T	T	rs150002541	by1000genomes	TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:152382287C>T	uc001ezx.2	-	3	1345	c.1271G>A	c.(1270-1272)CGC>CAC	p.R424H		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	424					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCACACAGCGCCTTGGGTG	0.602000													17	37					0	0	0.028581	0	0
C4BPB	725	broad.mit.edu	37	1	207265091	207265091	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:207265091T>A	uc001hfj.2	+	4	465	c.335T>A	c.(334-336)ATC>AAC	p.I112N	C4BPB_uc001hfi.2_Missense_Mutation_p.I111N|C4BPB_uc001hfk.2_Missense_Mutation_p.I111N|C4BPB_uc001hfl.2_Missense_Mutation_p.I112N|C4BPB_uc009xcd.2_Missense_Mutation_p.I102N|C4BPB_uc001hfm.2_Missense_Mutation_p.I112N|C4BPB_uc010pse.1_Missense_Mutation_p.I102N	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	112	Sushi 2.				blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						GACCACTACATCCTCAAGGGC	0.493000													7	57					0	0	0.038147	0	0
PARP1	142	broad.mit.edu	37	1	226553737	226553737	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:226553737G>C	uc001hqd.3	-	18	2594	c.2423C>G	c.(2422-2424)TCT>TGT	p.S808C		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	808	PARP catalytic.				cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		GGCTTCTTCAGAATCTCTGTC	0.448000								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					3	45					0	0	0.004672	0	0
ANO9	338440	broad.mit.edu	37	11	418583	418583	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr11:418583C>T	uc001lpi.2	-	23	2222	c.2137G>A	c.(2137-2139)GCC>ACC	p.A713T	SIGIRR_uc001lpf.2_5'Flank|SIGIRR_uc001lpe.1_5'Flank|ANO9_uc001lph.2_Missense_Mutation_p.A406T|ANO9_uc010qvv.1_Missense_Mutation_p.A569T	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	713	Helical; (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						ATGCACAAGGCCACGTGCTAG	0.627000													23	36					0	0	0.062417	0	0
MUC5B	727897	broad.mit.edu	37	11	1265993	1265993	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr11:1265993G>T	uc009ycr.1	+	48	9923	c.9797G>T	c.(9796-9798)CGC>CTC	p.R3266L	MUC5B_uc001ltb.2_Missense_Mutation_p.R2631L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2628	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.			Missing (in Ref. 6; AAB61398).|RTL -> LTP (in Ref. 4; CAA96577).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGGACGGCACGCACGCTTCCA	0.642000													3	34					8.12818e-05	8.84538e-05	0.029380	1	0
OR2D2	120776	broad.mit.edu	37	11	6913294	6913294	+	Silent	SNP	T	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr11:6913294T>C	uc010rau.1	-	1	438	c.438A>G	c.(436-438)ACA>ACG	p.T146T		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCCATGATCCTGTTGCCAGCT	0.493000													3	68					0	0	0.004672	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54902315	54902315	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr12:54902315G>A	uc001sgc.3	+	5	585	c.506G>A	c.(505-507)GGT>GAT	p.G169D	NCKAP1L_uc010sox.1_Translation_Start_Site|NCKAP1L_uc010soy.1_Missense_Mutation_p.G119D	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	169					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CATGGGCATGGGTGAGTTAAG	0.423000													67	134					0	0	0.048971	0	0
RB1	5925	broad.mit.edu	37	13	48953728	48953728	+	Splice_Site	SNP	A	G	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr13:48953728A>G	uc001vcb.2	+	14	1499	c.1333_splice	c.e14-2	p.R445_splice		NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1						androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(7)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTTTGTTTGTAGCGATACAAA	0.204000		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			9	7					0	0	0.058154	0	0
GMPR2	51292	broad.mit.edu	37	14	24707610	24707610	+	Nonsense_Mutation	SNP	A	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr14:24707610A>T	uc001wnr.2	+	9	1238	c.856A>T	c.(856-858)AGA>TGA	p.R286*	GMPR2_uc001wnv.2_Nonsense_Mutation_p.R123*|GMPR2_uc001wns.2_Nonsense_Mutation_p.R286*|GMPR2_uc001wnt.2_Nonsense_Mutation_p.R253*|GMPR2_uc001wnu.2_Missense_Mutation_p.R250W|GMPR2_uc001wnw.2_Nonsense_Mutation_p.R286*|GMPR2_uc010all.2_Nonsense_Mutation_p.R258*|GMPR2_uc001wnx.2_Nonsense_Mutation_p.R304*|GMPR2_uc010tod.1_Nonsense_Mutation_p.R253*|GMPR2_uc010alk.1_Missense_Mutation_p.R286W|GMPR2_uc010toe.1_Missense_Mutation_p.R286W	NM_001002001	NP_001002001	Q9P2T1	GMPR2_HUMAN	guanosine monophosphate reductase 2 isoform 2	286					nucleotide metabolic process|purine base metabolic process|purine-containing compound salvage	cytosol	GMP reductase activity|metal ion binding			ovary(3)	3				GBM - Glioblastoma multiforme(265;0.0181)		GGCTGAGTACAGGTATGTGTG	0.512000													3	40					0	0	0.009096	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889301	23889301	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr15:23889301C>T	uc001ywj.3	-	1	1875	c.1780G>A	c.(1780-1782)GTC>ATC	p.V594I		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		AACCTCAGGACAAGCATCTTG	0.522000													19	34					0	0	0.043863	0	0
MYO5A	4644	broad.mit.edu	37	15	52622645	52622645	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr15:52622645C>T	uc002aby.2	-	34	4629	c.4385G>A	c.(4384-4386)CGA>CAA	p.R1462Q	MYO5A_uc002abx.3_Missense_Mutation_p.R1435Q|MYO5A_uc010ugd.1_Missense_Mutation_p.R184Q|MYO5A_uc002abz.1_RNA	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	1462					actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		GTTGACTGGTCGGATGGGTTC	0.418000													56	96					0	0	0.048971	0	0
SPSB3	90864	broad.mit.edu	37	16	1828006	1828006	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr16:1828006C>T	uc002cmr.2	-	4	569	c.536G>A	c.(535-537)CGC>CAC	p.R179H	SPSB3_uc002cms.2_Missense_Mutation_p.R51H|SPSB3_uc002cmt.2_Missense_Mutation_p.R51H|SPSB3_uc002cmu.2_Missense_Mutation_p.R179H|SPSB3_uc002cmv.2_Missense_Mutation_p.R51H|SPSB3_uc010uvm.1_3'UTR	NM_080861	NP_543137	Q6PJ21	SPSB3_HUMAN	splA/ryanodine receptor domain and SOCS box	179	B30.2/SPRY.				intracellular signal transduction						0						GAACGTGTGGCGGTATTTGTC	0.697000													10	21					0	0	0.058154	0	0
KIAA0174	9798	broad.mit.edu	37	16	71958718	71958718	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr16:71958718T>C	uc002fbj.1	+	11	1221	c.938T>C	c.(937-939)GTT>GCT	p.V313A	KIAA0174_uc010cgh.1_Missense_Mutation_p.V313A|KIAA0174_uc002fbk.1_Silent_p.L299L|KIAA0174_uc002fbm.1_Missense_Mutation_p.V300A|KIAA0174_uc002fbl.1_Missense_Mutation_p.V269A|KIAA0174_uc002fbn.1_Missense_Mutation_p.V152A|KIAA0174_uc010cgi.1_Missense_Mutation_p.V71A|KIAA0174_uc010cgj.1_Intron|KIAA0174_uc010vml.1_RNA			P53990	IST1_HUMAN	SubName: Full=cDNA FLJ32696 fis, clone TESTI2000358; SubName: Full=cDNA FLJ77725;	298	Interaction with VTA1.				cell cycle|cell division	cytoplasmic membrane-bounded vesicle|ER-Golgi intermediate compartment	protein binding			ovary(1)	1						GCACAGATTGTTGGTGAGTAG	0.418000													20	9					0	0	0.062417	0	0
OR3A2	4995	broad.mit.edu	37	17	3181629	3181629	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr17:3181629T>A	uc002fvg.2	-	1	640	c.601A>T	c.(601-603)ACC>TCC	p.T201S		NM_002551	NP_002542	P47893	OR3A2_HUMAN	olfactory receptor, family 3, subfamily A,	201	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						TTGAGTTGGGTGCTGGAGCAG	0.552000													29	60					0	0	0.050027	0	0
LGALS9C	654346	broad.mit.edu	37	17	18396173	18396173	+	Silent	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr17:18396173G>A	uc002gtw.2	+	10	994	c.924G>A	c.(922-924)TCG>TCA	p.S308S	LGALS9C_uc010vyb.1_Silent_p.S220S	NM_001040078	NP_001035167	Q6DKI2	LEG9C_HUMAN	galectin 9 like	308	Galectin 2.						sugar binding			ovary(1)	1						AGAGCTTCTCGGTAAGGCGCC	0.592000													8	19					0	0	0.020292	0	0
NF1	4763	broad.mit.edu	37	17	29497016	29497016	+	Splice_Site	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr17:29497016G>A	uc002hgg.2	+	5	919	c.586_splice	c.e5+1	p.E196_splice	NF1_uc002hge.1_Splice_Site_p.E196_splice|NF1_uc002hgf.1_Splice_Site_p.E196_splice|NF1_uc002hgh.2_Splice_Site_p.E196_splice|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CTCCTGAAGGGTAAGTTTAAA	0.289000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			14	34					0	0	0.105934	0	0
NF1	4763	broad.mit.edu	37	17	29677227	29677227	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr17:29677227C>T	uc002hgg.2	+	50	7681	c.7348C>T	c.(7348-7350)CGA>TGA	p.R2450*	NF1_uc002hgh.2_Nonsense_Mutation_p.R2429*|NF1_uc010cso.2_Nonsense_Mutation_p.R638*|NF1_uc010wbt.1_5'UTR|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2450					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.R2450*(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TGAAGAAGTTCGAAGTCGCTG	0.363000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			39	72					0	0	0.086207	0	0
SLC16A5	9121	broad.mit.edu	37	17	73096729	73096729	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr17:73096729C>G	uc002jmr.2	+	5	1343	c.971C>G	c.(970-972)GCA>GGA	p.A324G	SLC16A5_uc002jms.1_Missense_Mutation_p.A324G|SLC16A5_uc002jmt.2_Missense_Mutation_p.A324G|SLC16A5_uc002jmu.2_Missense_Mutation_p.A324G|SLC16A5_uc010wrt.1_Missense_Mutation_p.A364G	NM_004695	NP_004686	O15375	MOT6_HUMAN	solute carrier family 16, member 5	324	Helical; (Potential).				organic anion transport	integral to plasma membrane|membrane fraction	secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	all_lung(278;0.226)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)		Pyruvic acid(DB00119)	GTGTGTGCGGCATCAGGTGAC	0.617000													280	491					0	0	0.048971	0	0
DSG2	1829	broad.mit.edu	37	18	29099849	29099849	+	Silent	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr18:29099849C>T	uc002kwu.3	+	3	353	c.165C>T	c.(163-165)CCC>CCT	p.P55P		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	55	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TCACCGCCCCCGTGGCTCTTC	0.443000													31	40					0	0	0.045705	0	0
CCDC159	126075	broad.mit.edu	37	19	11462650	11462650	+	Splice_Site	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr19:11462650G>A	uc010xlw.1	+	7	818	c.739_splice	c.e7+1	p.Q247_splice	CCDC159_uc010xls.1_Splice_Site_p.Q164_splice|CCDC159_uc010xlt.1_Splice_Site_p.Q164_splice|CCDC159_uc010xlv.1_Splice_Site_p.Q163_splice	NM_001080503	NP_001073972	P0C7I6	CC159_HUMAN	coiled-coil domain-containing-like											ovary(1)	1						CAGAAGCTCCGTGAGTTCCTG	0.612000													8	11					0	0	0.047766	0	0
MEF2B	100271849	broad.mit.edu	37	19	19258537	19258537	+	Silent	SNP	A	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr19:19258537A>C	uc002nlm.2	-	4	477	c.363T>G	c.(361-363)GGT>GGG	p.G121G	MEF2B_uc002nln.2_Silent_p.G168G|MEF2B_uc002nll.2_Silent_p.G121G|LOC729991-MEF2B_uc010xqo.1_Silent_p.G121G|LOC729991-MEF2B_uc010xqp.1_Silent_p.G121G|LOC729991-MEF2B_uc002nlo.2_Silent_p.G121G|LOC729991-MEF2B_uc002nlp.2_Silent_p.G121G|MEF2B_uc002nlk.2_Silent_p.G124G	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			AGGCCGGATCACCCCCTTCGC	0.627000													7	37					0	0	0.049695	0	0
ZNF429	353088	broad.mit.edu	37	19	21720518	21720518	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr19:21720518C>A	uc002nqd.1	+	4	1800	c.1663C>A	c.(1663-1665)CAT>AAT	p.H555N	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	555	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ACTTACTCAACATAAGAAAAT	0.353000													14	42					1.3612e-06	1.50342e-06	0.024245	1	0
ZNF536	9745	broad.mit.edu	37	19	30935048	30935048	+	Silent	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr19:30935048C>T	uc002nsu.1	+	2	717	c.579C>T	c.(577-579)CGC>CGT	p.R193R	ZNF536_uc010edd.1_Silent_p.R193R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCGTGTGCGCGAGGAGAACC	0.692000													4	6					0	0	0.009096	0	0
SPTBN4	57731	broad.mit.edu	37	19	40998962	40998962	+	Splice_Site	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr19:40998962G>A	uc002ony.2	+	5	673	c.587_splice	c.e5+1	p.G196_splice	SPTBN4_uc002onx.2_Splice_Site_p.G196_splice|SPTBN4_uc002onz.2_Splice_Site_p.G196_splice	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform						actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGACAGCTGGGTAAGCACCCC	0.358000													5	18					0	0	0.021553	0	0
APOB	338	broad.mit.edu	37	2	21226162	21226162	+	Silent	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr2:21226162C>T	uc002red.2	-	29	12260	c.12132G>A	c.(12130-12132)AGG>AGA	p.R4044R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4044					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATTCCCGGACCCTCAACTCAG	0.393000													105	232					0	0	0.048971	0	0
GPR75	10936	broad.mit.edu	37	2	54081969	54081969	+	Translation_Start_Site	SNP	A	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr2:54081969A>C	uc002rxo.3	-	2	196	c.-75T>G	c.(-77--73)ATTGC>ATGGC		ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75							integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			ACAGATGAGCAATATGTGACA	0.438000													11	20					0	0	0.105934	0	0
POTEF	728378	broad.mit.edu	37	2	130832726	130832726	+	Silent	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr2:130832726G>A	uc010fmh.2	-	17	2719	c.2319C>T	c.(2317-2319)CAC>CAT	p.H773H		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	773	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						TGATGATGCCGTGTTCCATGG	0.582000													37	89					0	0	0.098360	0	0
MFSD6	54842	broad.mit.edu	37	2	191301884	191301884	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr2:191301884G>A	uc002urz.2	+	3	1453	c.1129G>A	c.(1129-1131)GTT>ATT	p.V377I		NM_017694	NP_060164	Q6ZSS7	MFSD6_HUMAN	major facilitator superfamily domain containing	377	Helical; (Potential).				transmembrane transport	integral to membrane				ovary(2)	2						CGTCTTCGGCGTTCTCATGAC	0.512000													19	29					0	0	0.038395	0	0
RHBDD1	84236	broad.mit.edu	37	2	227729540	227729540	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr2:227729540A>C	uc002voi.2	+	2	252	c.131A>C	c.(130-132)AAC>ACC	p.N44T	RHBDD1_uc010fxc.2_Missense_Mutation_p.N44T	NM_032276	NP_115652	Q8TEB9	RHBD1_HUMAN	rhomboid domain containing 1	44						integral to membrane	serine-type endopeptidase activity			ovary(1)	1		Renal(207;0.023)|all_lung(227;0.13)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;1.47e-11)|all cancers(144;1.52e-08)|Lung(261;0.0128)|LUSC - Lung squamous cell carcinoma(224;0.0175)		TTCTTCTTGAACCCTCAGAAG	0.468000													8	97					0	0	0.076483	0	0
UCKL1	54963	broad.mit.edu	37	20	62577859	62577859	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr20:62577859C>T	uc010gkn.2	-	2	294	c.251G>A	c.(250-252)CGG>CAG	p.R84Q	UCKL1_uc011abm.1_Missense_Mutation_p.R69Q|UCKL1_uc011abn.1_RNA|UCKL1_uc011abo.1_RNA	NM_017859	NP_060329	Q9NWZ5	UCKL1_HUMAN	uridine-cytidine kinase 1-like 1	84					interspecies interaction between organisms	endoplasmic reticulum|nucleus	ATP binding|phosphotransferase activity, alcohol group as acceptor|protein binding|uridine kinase activity				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CCAGGGCGGCCGCCCGGCGGT	0.677000													17	14					0	0	0.033300	0	0
C21orf99	149992	broad.mit.edu	37	21	14424181	14424181	+	RNA	SNP	T	C	C	rs144730348	by1000genomes	TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr21:14424181T>C	uc002yiy.3	+	5		c.2996T>C			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CTGACACGGCTGAAAGCTTGG	0.453000													5	10					0	0	0.014758	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398000													2	11					0	0	0.004672	0	0
SLC25A38	54977	broad.mit.edu	37	3	39431997	39431997	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr3:39431997C>T	uc003cjo.2	+	3	676	c.275C>T	c.(274-276)CCT>CTT	p.P92L		NM_017875	NP_060345	Q96DW6	S2538_HUMAN	solute carrier family 25, member 38	92	Solcar 1.|Helical; Name=2; (Potential).				erythrocyte differentiation|heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		GGGATGTCCCCTGTAAGCTGC	0.478000													13	53					0	0	0.093190	0	0
LOC285359	285359	broad.mit.edu	37	3	101432023	101432023	+	RNA	SNP	T	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr3:101432023T>C	uc003dvj.2	+	1		c.746T>C				NR_002941				Homo sapiens cDNA FLJ12205 fis, clone MAMMA1000931.												0						ACAGCGATTCTGAGGGTGACT	0.443000													4	27					0	0	0.021553	0	0
KDR	3791	broad.mit.edu	37	4	55956204	55956204	+	Silent	SNP	C	T	T	rs147630437		TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr4:55956204C>T	uc003has.2	-	23	3413	c.3111G>A	c.(3109-3111)TCG>TCA	p.S1037S	KDR_uc003hat.1_Silent_p.S1037S	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1037	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CGTTCTTCTCCGATAAGAGGA	0.428000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			27	49					0	0	0.108266	0	0
SEC31A	22872	broad.mit.edu	37	4	83763471	83763471	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr4:83763471G>C	uc003hnf.2	-	22	2954	c.2790C>G	c.(2788-2790)CAC>CAG	p.H930Q	SEC31A_uc003hnd.2_Missense_Mutation_p.H86Q|SEC31A_uc003hne.2_Missense_Mutation_p.H694Q|SEC31A_uc011ccl.1_Missense_Mutation_p.H891Q|SEC31A_uc003hnl.2_Intron|SEC31A_uc003hng.2_Missense_Mutation_p.H930Q|SEC31A_uc003hnh.2_Missense_Mutation_p.H930Q|SEC31A_uc003hni.2_Intron|SEC31A_uc003hnj.2_Missense_Mutation_p.H891Q|SEC31A_uc011ccm.1_Missense_Mutation_p.H925Q|SEC31A_uc011ccn.1_Missense_Mutation_p.H930Q|SEC31A_uc003hnk.2_Missense_Mutation_p.H891Q|SEC31A_uc003hnm.2_Missense_Mutation_p.H930Q	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	930	Interaction with PDCD6.|Pro-rich.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				AAGAGGCCTGGTGCTGTGCTG	0.552000													10	16					0	0	0.058154	0	0
RXFP1	59350	broad.mit.edu	37	4	159526262	159526262	+	Silent	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr4:159526262C>T	uc003ipz.2	+	5	517	c.435C>T	c.(433-435)TGC>TGT	p.C145C	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Silent_p.C64C|RXFP1_uc010iqo.2_Silent_p.C145C|RXFP1_uc011cjb.1_Silent_p.C91C|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_Silent_p.C64C|RXFP1_uc011cjd.1_Silent_p.C64C|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Silent_p.C172C|RXFP1_uc010iqm.2_Silent_p.C112C|RXFP1_uc011cjf.1_Silent_p.C15C|RXFP1_uc010iqn.2_Silent_p.C91C	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	145	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		CTCCTGATTGCTTCAAGAATT	0.299000													10	24					0	0	0.080935	0	0
ZFP42	132625	broad.mit.edu	37	4	188924355	188924355	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr4:188924355C>T	uc003izg.1	+	3	639	c.394C>T	c.(394-396)CCA>TCA	p.P132S	ZFP42_uc003izh.1_Missense_Mutation_p.P132S|ZFP42_uc003izi.1_Missense_Mutation_p.P132S	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	132					female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GAAAGAGCTTCCACAAAAGAT	0.418000													46	76					0	0	0.045515	0	0
PCDHB13	56123	broad.mit.edu	37	5	140594885	140594885	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr5:140594885C>T	uc003lja.1	+	1	1377	c.1190C>T	c.(1189-1191)GCG>GTG	p.A397V		NM_018933	NP_061756	Q9Y5F0	PCDBD_HUMAN	protocadherin beta 13 precursor	397	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGAAATCCGCGGAAAACTTT	0.453000													25	52					0	0	0.083992	0	0
GRM6	2916	broad.mit.edu	37	5	178418950	178418951	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr5:178418950_178418951CC>AT	uc003mjr.2	-	2	817_818	c.638_639GG>AT	c.(637-639)TGG>TAT	p.W213Y	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	213	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ACACATAGTTCCATCCCAGTGC	0.624000													9	21					0	0	0.004672	0	0
HIVEP1	3096	broad.mit.edu	37	6	12122495	12122495	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr6:12122495G>C	uc003nac.2	+	4	2646	c.2467G>C	c.(2467-2469)GTG>CTG	p.V823L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	823					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				ATCAAAGCAAGTGTTTCTTCT	0.403000													80	34					0	0	0.048971	0	0
C6orf138	442213	broad.mit.edu	37	6	47846810	47846810	+	Missense_Mutation	SNP	A	C	C			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr6:47846810A>C	uc011dwm.1	-	3	1804	c.1719T>G	c.(1717-1719)AAT>AAG	p.N573K	C6orf138_uc011dwn.1_Missense_Mutation_p.N337K	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	590						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						AGATGATATCATTTCGAAAAT	0.423000													43	12					0	0	0.098360	0	0
PRDM13	59336	broad.mit.edu	37	6	100062566	100062566	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr6:100062566C>G	uc003pqg.1	+	4	2316	c.2055C>G	c.(2053-2055)GAC>GAG	p.D685E		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	685					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		ACGACAGTGACGTGGACGTCT	0.701000													21	11					0	0	0.069288	0	0
COG5	10466	broad.mit.edu	37	7	107167729	107167729	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr7:107167729C>T	uc003ved.2	-	6	1109	c.584G>A	c.(583-585)GGG>GAG	p.G195E	COG5_uc003vec.2_Missense_Mutation_p.G195E|COG5_uc003vee.2_Missense_Mutation_p.G195E	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	195					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TCTACTTCCCCCTTGCAGTTG	0.338000													16	15					0	0	0.038395	0	0
FAM75C1	441452	broad.mit.edu	37	9	90537303	90537303	+	Silent	SNP	G	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr9:90537303G>A	uc010mqi.2	+	4	2510	c.2481G>A	c.(2479-2481)GAG>GAA	p.E827E	FAM75C1_uc004apq.3_Silent_p.E810E	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CCACAAGTGAGGATGTGCGTG	0.557000													3	59					0	0	0.004672	0	0
CXorf22	170063	broad.mit.edu	37	X	35985795	35985795	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chrX:35985795C>T	uc004ddj.2	+	10	1719	c.1660C>T	c.(1660-1662)CGC>TGC	p.R554C	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	554								p.R554R(1)		large_intestine(1)|lung(1)|ovary(1)	3						CTTGGCAAAACGCAAGAATTA	0.393000													16	51					0	0	0.033300	0	0
APEX2	27301	broad.mit.edu	37	X	55033526	55033526	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chrX:55033526A>T	uc004dtz.2	+	6	1291	c.1215A>T	c.(1213-1215)CAA>CAT	p.Q405H	APEX2_uc011mom.1_Missense_Mutation_p.Q234H	NM_014481	NP_055296	Q9UBZ4	APEX2_HUMAN	apurinic/apyrimidinic endonuclease 2	405					cell cycle|DNA recombination|DNA repair	nucleus	DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|endonuclease activity|exonuclease activity|zinc ion binding			breast(1)	1						GCTGTCCCCAAGCCTCTCCTG	0.587000								Other_BER_factors					9	18					0	0	0.047766	0	0
OPHN1	4983	broad.mit.edu	37	X	67283790	67283790	+	Silent	SNP	G	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chrX:67283790G>T	uc004dww.3	-	21	2358	c.2064C>A	c.(2062-2064)GCC>GCA	p.A688A	OPHN1_uc011mpg.1_Intron	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	688	Pro-rich.				axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						GTCCATTGGTGGCCTTTGGGG	0.607000													13	26					1.5739e-10	1.76467e-10	0.028581	1	0
ACSL4	2182	broad.mit.edu	37	X	108921235	108921235	+	Silent	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chrX:108921235C>T	uc004eoi.2	-	9	1540	c.1035G>A	c.(1033-1035)CCG>CCA	p.P345P	ACSL4_uc004eoj.2_Silent_p.P304P|ACSL4_uc004eok.2_Silent_p.P304P|ACSL4_uc010npp.1_Silent_p.P345P	NM_022977	NP_075266	O60488	ACSL4_HUMAN	acyl-CoA synthetase long-chain family member 4	345	Cytoplasmic (Potential).				fatty acid metabolic process|learning or memory|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(1)|lung(1)|ovary(1)	3					Icosapent(DB00159)|Troglitazone(DB00197)	AGAGTGTAAGCGGAGAAGAAT	0.428000													55	83					0	0	0.048971	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685930	125685930	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chrX:125685930C>T	uc004eul.2	-	1	913	c.662G>A	c.(661-663)CGG>CAG	p.R221Q		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	221	WD 2.									skin(3)|ovary(1)	4						CGGGTCCATCCGCCACAGCGC	0.657000													17	25					0	0	0.033300	0	0
CXorf40B	541578	broad.mit.edu	37	X	149100914	149100914	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chrX:149100914T>A	uc004fdy.2	-	5	841	c.325A>T	c.(325-327)AAT>TAT	p.N109Y	CXorf40B_uc011mxs.1_RNA	NM_001013845	NP_001013867	Q96DE9	CX04B_HUMAN	hypothetical protein LOC541578	109											0	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGCTTGATTTTCTAGTTCC	0.473000													39	65					0	0	0.080422	0	0
FLG2	388698	broad.mit.edu	37	1	152324558	152324559	+	Frame_Shift_Del	DEL	TG	-	-	rs140875805	byFrequency	TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr1:152324558_152324559delTG	uc001ezw.3	-	3	5776_5777	c.5703_5704delCA	c.(5701-5706)CACAGCfs	p.H1901fs	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1901_1902							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGCTTGGCTGTGTGTGTGTC	0.515													7	258	---	---	---	---					
PTEN	5728	broad.mit.edu	37	10	89720803	89720804	+	Frame_Shift_Ins	INS	-	A	A	rs146650273		TCGA-DU-5847-01A-11D-1705-08	TCGA-DU-5847-10A-01D-1705-08									Somatic	Phase_I	Capture				Illumina GAIIx	c5a5c729-4bff-4787-a56b-f541ec22c7e9	c448c220-5f1b-423f-8d89-098662d2fed1	g.chr10:89720803_89720804insA	uc001kfb.2	+	9	1985_1986	c.954_955insA	c.(952-957)CTTACTfs	p.L318fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	318_319	C2 tensin-type.		Missing (in glioma; reduced tumor suppressor activity; fails to inactivate AKT/PKB).		activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.L318fs*2(24)|p.T319fs*1(22)|p.T319fs*6(6)|p.V317fs*3(4)|p.R55fs*1(4)|p.?(2)|p.N212fs*1(2)|p.Y27fs*1(2)|p.T319del(2)|p.V317fs*6(2)|p.T319_K332del(1)|p.G165_*404del(1)|p.L318fs*3(1)|p.G165_K342del(1)|p.L316fs*1(1)|p.T319fs*4(1)|p.W274_F341del(1)|p.V317_K322del(1)|p.L318F(1)|p.T318fs*2(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		ATCTAGTACTTACTTTAACAAA	0.327		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			57	23	---	---	---	---					
