Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNAJC11	55735	broad.mit.edu	37	1	6697392	6697392	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:6697392T>C	uc001aof.2	-	14	1496	c.1390A>G	c.(1390-1392)ATC>GTC	p.I464V	DNAJC11_uc010nzt.1_Intron|DNAJC11_uc001aog.2_Missense_Mutation_p.I412V|DNAJC11_uc010nzu.1_Missense_Mutation_p.I374V	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	464					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		GCATTGACGATGATGAGGCCT	0.572000													7	153					0	0	0.047766	0	0
CASZ1	54897	broad.mit.edu	37	1	10703273	10703273	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:10703273G>A	uc001aro.2	-	19	4284	c.3964C>T	c.(3964-3966)CGG>TGG	p.R1322W		NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	1322	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		ATGTGCTTCCGCGCGTGGGAG	0.642000													4	109					0	0	0.009096	0	0
OVGP1	5016	broad.mit.edu	37	1	111966210	111966210	+	Missense_Mutation	SNP	T	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:111966210T>A	uc001eba.2	-	5	494	c.438A>T	c.(436-438)AGA>AGT	p.R146S	OVGP1_uc001eaz.2_Missense_Mutation_p.R108S|OVGP1_uc010owb.1_5'UTR|OVGP1_uc010owc.1_Missense_Mutation_p.R136S	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	146					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		TGGGGCTGCCTCTTAGTCCAG	0.403000													17	49					0	0	0.049695	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527000													3	37					0	0	0.004672	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153315567	153315567	+	Silent	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:153315567T>C	uc001fbo.2	-	5	536	c.471A>G	c.(469-471)AAA>AAG	p.K157K	PGLYRP4_uc001fbp.2_Silent_p.K153K	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	157					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACTGTTACCTTTCTTAGTGC	0.478000													19	25					0	0	0.055883	0	0
PBXIP1	57326	broad.mit.edu	37	1	154924372	154924372	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:154924372G>A	uc001ffr.2	-	3	136	c.77C>T	c.(76-78)CCG>CTG	p.P26L	PBXIP1_uc001ffs.2_5'UTR|PBXIP1_uc010pep.1_Intron|PBXIP1_uc009woy.1_RNA	NM_020524	NP_065385	Q96AQ6	PBIP1_HUMAN	pre-B-cell leukemia homeobox interacting protein	26					cell differentiation|multicellular organismal development|negative regulation of transcription, DNA-dependent	cytosol|microtubule|nucleus	protein binding|transcription corepressor activity			large_intestine(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			CCTGGATGCCGGGCCCAGTGT	0.592000													3	70					0	0	0.009096	0	0
NDST2	8509	broad.mit.edu	37	10	75565368	75565368	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr10:75565368G>C	uc001jvk.2	-	8	2527	c.1723C>G	c.(1723-1725)CAG>GAG	p.Q575E	NDST2_uc010qks.1_Missense_Mutation_p.Q201E|NDST2_uc010qkt.1_Missense_Mutation_p.Q452E|NDST2_uc001jvl.1_5'Flank|NDST2_uc009xro.2_Missense_Mutation_p.Q201E|NDST2_uc010qku.1_Missense_Mutation_p.Q450E	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	575	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					CTTCGCTCCTGAGGGAAAAGT	0.473000													3	41					0	0	0.004672	0	0
IFIT5	24138	broad.mit.edu	37	10	91178137	91178137	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr10:91178137A>G	uc010qnh.1	+	2	1412	c.1181A>G	c.(1180-1182)AAT>AGT	p.N394S	IFIT5_uc010qng.1_Missense_Mutation_p.N346S	NM_012420	NP_036552	Q13325	IFIT5_HUMAN	interferon-induced protein with	394	TPR 7.						binding				0						AAATCAGAAAATACTGCCATC	0.423000													3	53					0	0	0.004672	0	0
SCD	6319	broad.mit.edu	37	10	102112184	102112184	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr10:102112184C>T	uc001kqy.2	+	3	862	c.372C>T	c.(370-372)AGC>AGT	p.S124S		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	124	Histidine box-1.|Cytoplasmic (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		GTCTGTGGAGCCACCGCTCTT	0.522000													66	120					0	0	0.048971	0	0
ABLIM1	3983	broad.mit.edu	37	10	116207683	116207683	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr10:116207683A>G	uc010qsg.1	-	15	1790	c.1691T>C	c.(1690-1692)ATT>ACT	p.I564T	ABLIM1_uc010qsh.1_Missense_Mutation_p.I532T|ABLIM1_uc010qsi.1_Missense_Mutation_p.I504T|ABLIM1_uc010qsk.1_Intron|ABLIM1_uc009xyp.2_Missense_Mutation_p.I528T|ABLIM1_uc010qsf.1_Missense_Mutation_p.I241T|ABLIM1_uc009xyn.2_Missense_Mutation_p.I180T|ABLIM1_uc010qsj.1_Intron|ABLIM1_uc009xyo.2_Missense_Mutation_p.I377T	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	564					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		GTCCGTCTCAATCTTTGGTGT	0.547000													4	87					0	0	0.009096	0	0
SLC39A13	91252	broad.mit.edu	37	11	47434972	47434972	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr11:47434972G>A	uc009ylq.2	+	5	730	c.559G>A	c.(559-561)GCT>ACT	p.A187T	SLC39A13_uc001nfd.2_Missense_Mutation_p.A187T|SLC39A13_uc001nfe.1_RNA|SLC39A13_uc001nff.3_Missense_Mutation_p.A187T|SLC39A13_uc001nfg.3_Missense_Mutation_p.A187T	NM_001128225	NP_001121697	Q96H72	S39AD_HUMAN	solute carrier family 39 (zinc transporter),	187	Poly-Ala.|Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity				0				Lung(87;0.0936)		AGACCCCACTGCTGCTGCCGC	0.657000													13	31					0	0	0.028581	0	0
LOC100288778	100288778	broad.mit.edu	37	12	88936	88936	+	Silent	SNP	A	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:88936A>C	uc010scy.1	+	7	912	c.357A>C	c.(355-357)GCA>GCC	p.A119A	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdc.1_RNA|LOC100288778_uc010sdd.1_Silent_p.A119A|LOC100288778_uc010sde.1_Silent_p.A119A|LOC100288778_uc010sdf.1_Silent_p.A119A|LOC100288778_uc010sdg.1_Silent_p.A119A|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						TGGCCAGTGCACCCCCACTCC	0.512000													3	3					0	0	0.009096	0	0
ERC1	23085	broad.mit.edu	37	12	1219448	1219448	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:1219448G>A	uc001qjb.2	+	5	1493	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Missense_Mutation_p.E418K|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_Intron|ERC1_uc001qjf.2_Missense_Mutation_p.E418K|ERC1_uc010sdv.1_Missense_Mutation_p.E194K|ERC1_uc009zdp.2_Missense_Mutation_p.E55K	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	418	Potential.				I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			GAGTACTGAGGAAAGGGAAGA	0.388000													7	52					0	0	0.038147	0	0
PTPN6	5777	broad.mit.edu	37	12	7061284	7061284	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:7061284C>T	uc001qsb.2	+	3	512	c.270C>T	c.(268-270)GAC>GAT	p.D90D	PTPN6_uc001qsa.1_Silent_p.D92D|PTPN6_uc010sfr.1_Silent_p.D51D|PTPN6_uc009zfl.1_Silent_p.D90D|PTPN6_uc010sfs.1_Silent_p.D78D	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	90	SH2 1.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						AGGACCGCGACGGCACCATCA	0.597000													4	191					0	0	0.014758	0	0
PLCZ1	89869	broad.mit.edu	37	12	18854628	18854628	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:18854628C>T	uc010sid.1	-	8	1138	c.947G>A	c.(946-948)CGT>CAT	p.R316H	PLCZ1_uc001rdv.3_Missense_Mutation_p.R212H|PLCZ1_uc001rdw.3_Missense_Mutation_p.R57H|PLCZ1_uc001rdu.1_Missense_Mutation_p.R57H|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	316					intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					CACCTTACCACGCTTATCAGA	0.259000													4	19					0	0	0.009096	0	0
TFCP2	7024	broad.mit.edu	37	12	51497961	51497961	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:51497961C>G	uc001rxw.2	-	9	1402	c.943G>C	c.(943-945)GAG>CAG	p.E315Q	TFCP2_uc001rxv.1_Missense_Mutation_p.E315Q|TFCP2_uc009zlx.1_Missense_Mutation_p.E264Q|TFCP2_uc001rxx.2_Intron|TFCP2_uc009zly.1_Missense_Mutation_p.E217Q	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	315	Poly-Pro.|DNA-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGGGGTGGCTCTGGCTGGTGG	0.418000													6	135					0	0	0.021553	0	0
KRT6C	286887	broad.mit.edu	37	12	52863046	52863046	+	Missense_Mutation	SNP	C	T	T	rs140943956	byFrequency	TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:52863046C>T	uc001sal.3	-	9	1543	c.1495G>A	c.(1495-1497)GGT>AGT	p.G499S		NM_173086	NP_775109	P48668	K2C6C_HUMAN	keratin 6C	499	Tail.				cytoskeleton organization	keratin filament	structural molecule activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0828)		CCGCTGGCACCGCCATAGCCA	0.612000													7	30					0	0	0.038147	0	0
PA2G4	5036	broad.mit.edu	37	12	56501319	56501319	+	Silent	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:56501319A>G	uc001sjm.2	+	5	827	c.408A>G	c.(406-408)ACA>ACG	p.T136T	PA2G4_uc009zol.2_Silent_p.T136T|PA2G4_uc009zom.2_Silent_p.T136T	NM_006191	NP_006182	Q9UQ80	PA2G4_HUMAN	ErbB3-binding protein 1	136					cell cycle arrest|cell proliferation|negative regulation of transcription, DNA-dependent|regulation of translation|rRNA processing	cytoplasm|nucleolus|ribonucleoprotein complex	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding				0			OV - Ovarian serous cystadenocarcinoma(18;0.0739)			CCCAAGTAACAGGGAGGAAAG	0.453000													20	128					0	0	0.076483	0	0
MDM2	4193	broad.mit.edu	37	12	69229630	69229630	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:69229630G>C	uc001sui.2	+	9	993	c.706G>C	c.(706-708)GAA>CAA	p.E236Q	MDM2_uc009zri.2_Missense_Mutation_p.E191Q|MDM2_uc009zqx.2_Missense_Mutation_p.E181Q|MDM2_uc009zqw.2_Intron|MDM2_uc001suk.2_Intron|MDM2_uc009zqy.1_Missense_Mutation_p.E225Q|MDM2_uc001sun.3_Missense_Mutation_p.E55Q|MDM2_uc009zqz.2_Intron|MDM2_uc009zra.2_Missense_Mutation_p.E60Q|MDM2_uc001sum.1_Intron|MDM2_uc009zrd.2_5'UTR|MDM2_uc009zrc.2_Intron|MDM2_uc009zre.2_Intron|MDM2_uc009zrf.2_Intron|MDM2_uc001suo.2_Missense_Mutation_p.E30Q|MDM2_uc009zrg.2_Intron|MDM2_uc009zrh.2_Missense_Mutation_p.E30Q	NM_002392	NP_002383	Q00987	MDM2_HUMAN	mouse double minute 2 homolog isoform MDM2	230	Interaction with USP7.|ARF-binding.|Interaction with MTBP (By similarity).|Interaction with PYHIN1.				cellular response to hypoxia|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|establishment of protein localization|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein complex assembly|protein destabilization|protein localization to nucleus|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to antibiotic|synaptic transmission	cytosol|endocytic vesicle membrane|insoluble fraction|nucleolus|nucleoplasm|plasma membrane|protein complex	enzyme binding|identical protein binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|central_nervous_system(1)	3	all_cancers(1;8.46e-121)|all_epithelial(5;3.21e-36)|Lung NSC(4;2.16e-33)|all_lung(4;3.03e-31)|Glioma(1;1.9e-09)|Breast(13;1.59e-06)|all_neural(1;1.03e-05)|Melanoma(1;0.0171)|Renal(347;0.0684)		all cancers(2;8.67e-65)|GBM - Glioblastoma multiforme(2;8.89e-62)|BRCA - Breast invasive adenocarcinoma(5;2.43e-08)|Lung(24;1.5e-05)|LUAD - Lung adenocarcinoma(15;8.5e-05)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			TGGTGTAAGTGAACATTCAGG	0.363000			A		sarcoma|glioma|colorectal|other								4	112					0	0	0.009096	0	0
CHFR	55743	broad.mit.edu	37	12	133424718	133424718	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr12:133424718G>C	uc001ulf.2	-	14	1720	c.1636C>G	c.(1636-1638)CTG>GTG	p.L546V	CHFR_uc001ulc.1_RNA|CHFR_uc001ule.2_Missense_Mutation_p.L534V|CHFR_uc010tbs.1_Missense_Mutation_p.L545V|CHFR_uc001uld.2_Missense_Mutation_p.L505V|CHFR_uc010tbt.1_Missense_Mutation_p.L454V	NM_001161344	NP_001154816	Q96EP1	CHFR_HUMAN	checkpoint with forkhead and ring finger domains	546					cell division|mitosis|mitotic cell cycle checkpoint|modification-dependent protein catabolic process|protein polyubiquitination	PML body	nucleotide binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.00552)|all_epithelial(31;0.226)		OV - Ovarian serous cystadenocarcinoma(86;2.59e-08)|Epithelial(86;6.38e-07)|all cancers(50;1.56e-05)		ACGCCGTCCAGACACTTGTCA	0.552000													3	110					0	0	0.004672	0	0
SLC7A8	23428	broad.mit.edu	37	14	23598869	23598869	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr14:23598869C>T	uc001wiz.2	-	9	1979	c.1253G>A	c.(1252-1254)CGC>CAC	p.R418H	SLC7A8_uc001wiw.2_Missense_Mutation_p.R35H|SLC7A8_uc001wix.2_Missense_Mutation_p.R215H|SLC7A8_uc010tnk.1_Missense_Mutation_p.R194H|SLC7A8_uc010tnl.1_Missense_Mutation_p.R313H|SLC7A8_uc001wiy.2_RNA|SLC7A8_uc010akj.2_Intron	NM_012244	NP_036376	Q9UHI5	LAT2_HUMAN	solute carrier family 7 (cationic amino acid	418					blood coagulation|cellular amino acid metabolic process|leukocyte migration|metal ion homeostasis|response to toxin	basolateral plasma membrane|cytoplasm|integral to plasma membrane	neutral amino acid transmembrane transporter activity|organic cation transmembrane transporter activity|peptide antigen binding|protein binding|toxin transporter activity			ovary(1)	1	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.00809)	L-Alanine(DB00160)|L-Glutamine(DB00130)|L-Phenylalanine(DB00120)	CTTGATGGGGCGGGGGATATC	0.498000													5	163					0	0	0.014758	0	0
LOC646214	646214	broad.mit.edu	37	15	21936464	21936464	+	RNA	SNP	C	T	T	rs8025772	by1000genomes	TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr15:21936464C>T	uc010tzj.1	-	1		c.4276G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						GTTATGCAGACCATTTCTTTA	0.328000													4	13					0	0	0.009096	0	0
MTMR10	54893	broad.mit.edu	37	15	31253175	31253175	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr15:31253175T>C	uc001zfh.1	-	7	765	c.667A>G	c.(667-669)ACT>GCT	p.T223A	MTMR10_uc010azx.1_5'UTR|MTMR10_uc001zfi.1_5'UTR|MTMR10_uc001zfj.2_Missense_Mutation_p.T141A|MTMR10_uc001zfk.2_5'UTR|MTMR10_uc010ubl.1_RNA	NM_017762	NP_060232	Q9NXD2	MTMRA_HUMAN	myotubularin related protein 10	223	Myotubularin phosphatase.						phosphatase activity			ovary(1)	1		all_lung(180;2.81e-11)		all cancers(64;7.26e-15)|Epithelial(43;7.2e-11)|GBM - Glioblastoma multiforme(186;0.000158)|BRCA - Breast invasive adenocarcinoma(123;0.00426)|Lung(196;0.174)		TCCGAGTAAGTTTCAAAGAGT	0.373000													2	13					0	0	0.004672	0	0
DISP2	85455	broad.mit.edu	37	15	40661464	40661464	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr15:40661464C>T	uc001zlk.1	+	8	3240	c.3151C>T	c.(3151-3153)CGT>TGT	p.R1051C		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	1051					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CCGCCTGAGCCGTGTGGCCTT	0.632000													5	167					0	0	0.014758	0	0
BNIP2	663	broad.mit.edu	37	15	59961125	59961125	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr15:59961125T>C	uc010uhc.1	-	9	1225	c.1222A>G	c.(1222-1224)ATG>GTG	p.M408V	BNIP2_uc002agi.3_RNA|BNIP2_uc010uhb.1_Missense_Mutation_p.M349V	NM_004330	NP_004321	Q12982	BNIP2_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 2	287	CRAL-TRIO.				anti-apoptosis|apoptosis|positive regulation of muscle cell differentiation	nuclear envelope|perinuclear region of cytoplasm	calcium ion binding|GTPase activator activity|protein binding			ovary(1)	1						ACGTATTCCATGGGGACAAGT	0.308000													27	47					0	0	0.074837	0	0
TLN2	83660	broad.mit.edu	37	15	63127959	63127959	+	Silent	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr15:63127959T>C	uc002alb.3	+	53	7152	c.7152T>C	c.(7150-7152)GCT>GCC	p.A2384A	TLN2_uc002alc.3_Silent_p.A777A|TLN2_uc010uic.1_5'UTR|uc002ale.1_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2384	I/LWEQ.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CTGCCAATGCTGCAGACGACG	0.602000													41	193					0	0	0.048971	0	0
IDH2	3418	broad.mit.edu	37	15	90631837	90631837	+	Missense_Mutation	SNP	C	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr15:90631837C>A	uc002box.2	-	4	602	c.516G>T	c.(514-516)AGG>AGT	p.R172S	IDH2_uc010uqb.1_Missense_Mutation_p.R120S|IDH2_uc010uqc.1_Missense_Mutation_p.R42S|IDH2_uc010bnu.2_Intron	NM_002168	NP_002159	P48735	IDHP_HUMAN	isocitrate dehydrogenase 2 (NADP+),	172		Substrate (By similarity).			2-oxoglutarate metabolic process|glyoxylate cycle|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding	p.R172K(170)|p.R172M(21)|p.R172S(12)|p.R172W(7)|p.R172?(7)|p.R172G(2)		haematopoietic_and_lymphoid_tissue(621)|central_nervous_system(80)|bone(7)|skin(3)	711	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.106)			CATGGGCGTGCCTGCCAATGG	0.637000			M		GBM								26	43					2.44723e-14	2.63548e-14	0.099896	1	0
ADCY9	115	broad.mit.edu	37	16	4043500	4043500	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr16:4043500C>T	uc002cvx.2	-	4	2435	c.1896G>A	c.(1894-1896)TCG>TCA	p.S632S		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	632	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						TGATTCCGCACGAAGGGCAGG	0.552000													3	73					0	0	0.009096	0	0
ACSM1	116285	broad.mit.edu	37	16	20648161	20648161	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr16:20648161A>G	uc002dhm.1	-	9	1267	c.1199T>C	c.(1198-1200)GTC>GCC	p.V400A	ACSM1_uc002dhn.1_Intron|ACSM1_uc010bwg.1_Missense_Mutation_p.V400A	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	400					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GTCATCAATGACCTGTAGCAA	0.527000													22	45					0	0	0.076483	0	0
DNAH3	55567	broad.mit.edu	37	16	20990739	20990739	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr16:20990739C>T	uc010vbe.1	-	50	7989	c.7989G>A	c.(7987-7989)ACG>ACA	p.T2663T	DNAH3_uc010vbd.1_Silent_p.T98T	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2663	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TATTCAGGAGCGTCTTGAAGG	0.478000													6	87					0	0	0.038147	0	0
KIF22	3835	broad.mit.edu	37	16	29808401	29808401	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr16:29808401C>T	uc002dts.3	+	2	282	c.258C>T	c.(256-258)CTC>CTT	p.L86L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Silent_p.L18L|KIF22_uc010vdw.1_Silent_p.L18L|KIF22_uc010bzf.2_Silent_p.L18L	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	86	Kinesin-motor.				blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						AGGAGACTCTCAAATACCAGT	0.587000													4	110					0	0	0.014758	0	0
FAM57B	83723	broad.mit.edu	37	16	30037991	30037991	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr16:30037991T>C	uc002dvt.2	-	3	721	c.383A>G	c.(382-384)AAG>AGG	p.K128R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|FAM57B_uc002dvu.2_Missense_Mutation_p.K78R	NM_031478	NP_113666	Q71RH2	FA57B_HUMAN	hypothetical protein LOC83723	128	TLC.					endoplasmic reticulum|integral to membrane					0						GAGGAACTCCTTGTGCAGGTA	0.677000													18	40					0	0	0.062417	0	0
GNAO1	2775	broad.mit.edu	37	16	56226231	56226231	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr16:56226231C>G	uc002eit.3	+	1	981	c.84C>G	c.(82-84)ATC>ATG	p.I28M	GNAO1_uc002eiu.3_Missense_Mutation_p.I28M|LOC283856_uc002eis.1_5'Flank	NM_138736	NP_620073	P09471	GNAO_HUMAN	guanine nucleotide binding protein, alpha	28					dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|muscle contraction	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			lung(1)|breast(1)	2		all_neural(199;0.159)				AGGATGGCATCAGCGCCGCCA	0.637000													29	37					0	0	0.059317	0	0
TP53	7157	broad.mit.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	T	T	rs11540652		TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr17:7577538C>T	uc002gim.2	-	7	937	c.743G>A	c.(742-744)CGG>CAG	p.R248Q	TP53_uc002gig.1_Missense_Mutation_p.R248Q|TP53_uc002gih.2_Missense_Mutation_p.R248Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R116Q|TP53_uc010cng.1_Missense_Mutation_p.R116Q|TP53_uc002gii.1_Missense_Mutation_p.R116Q|TP53_uc010cnh.1_Missense_Mutation_p.R248Q|TP53_uc010cni.1_Missense_Mutation_p.R248Q|TP53_uc002gij.2_Missense_Mutation_p.R248Q|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.R155Q|TP53_uc002gio.2_Missense_Mutation_p.R116Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	248	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		R -> W (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).|NR -> KW (in sporadic cancers; somatic mutation).|R -> C (in a sporadic cancer; somatic mutation).|NR -> IP (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R248Q(523)|p.R248W(443)|p.R248L(63)|p.R248P(12)|p.R248G(11)|p.R248R(10)|p.0?(7)|p.R155Q(4)|p.N247_R248delNR(2)|p.N247_R248>KW(2)|p.M246_P250delMNRRP(2)|p.R248fs*97(2)|p.R248_P250delRRP(1)|p.N247_R249delNRR(1)|p.N247_P250delNRRP(1)|p.R249fs*96(1)|p.R248C(1)|p.G245fs*14(1)|p.N247_R248>IP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GATGGGCCTCCGGTTCATGCC	0.572000	R248Q(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HS683_CENTRAL_NERVOUS_SYSTEM)|R248Q(NAMALWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(HCC1143_BREAST)|R248Q(BL41_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SKUT1_SOFT_TISSUE)|R248Q(HSC4_UPPER_AERODIGESTIVE_TRACT)|R248Q(HEC1A_ENDOMETRIUM)|R248Q(SF295_CENTRAL_NERVOUS_SYSTEM)|R248Q(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(WSUDLCL2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIN87_STOMACH)|R248Q(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(DB_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(RT112_URINARY_TRACT)|R248Q(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PANC0203_PANCREAS)|R248Q(EM2_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SEM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(CI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(MOLM6_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NIHOVCAR3_OVARY)|R248Q(CA46_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(SW1463_LARGE_INTESTINE)|R248Q(HCC70_BREAST)|R248Q(KYSE150_OESOPHAGUS)|R248Q(NB4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(NCIH211_LUNG)|R248Q(KYO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R248Q(PC14_LUNG)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			62	32					0	0	0.048971	0	0
EPB41L3	23136	broad.mit.edu	37	18	5397173	5397173	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr18:5397173C>G	uc002kmt.1	-	18	2811	c.2725G>C	c.(2725-2727)GTC>CTC	p.V909L	EPB41L3_uc010wzh.1_Missense_Mutation_p.V740L|EPB41L3_uc002kmu.1_Missense_Mutation_p.V687L|EPB41L3_uc010dkq.1_Missense_Mutation_p.V578L|EPB41L3_uc002kms.1_Missense_Mutation_p.V144L|EPB41L3_uc010wze.1_Missense_Mutation_p.V214L|EPB41L3_uc010wzf.1_Missense_Mutation_p.V206L|EPB41L3_uc010wzg.1_Missense_Mutation_p.V181L|EPB41L3_uc010dkr.2_Missense_Mutation_p.V301L	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	909	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						GCTTTAGCGACCTCCTCCCCT	0.567000													7	110					0	0	0.047766	0	0
ICAM5	7087	broad.mit.edu	37	19	10402433	10402433	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr19:10402433C>T	uc002mnu.3	+	3	686	c.621C>T	c.(619-621)CAC>CAT	p.H207H	ICAM5_uc002mnv.3_Silent_p.H82H	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	207	Extracellular (Potential).|Ig-like C2-type 2.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			TGCGGCCGCACGGACTGGGAC	0.672000													3	64					0	0	0.014758	0	0
ZNF85	7639	broad.mit.edu	37	19	21131765	21131765	+	Missense_Mutation	SNP	G	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr19:21131765G>T	uc002npg.3	+	4	572	c.445G>T	c.(445-447)GAT>TAT	p.D149Y	ZNF85_uc010ecn.2_Missense_Mutation_p.D84Y|ZNF85_uc010eco.2_Missense_Mutation_p.D97Y|ZNF85_uc002npi.2_Missense_Mutation_p.D90Y	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	149	C2H2-type 1; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						ATTTCAATGTGATAAATATGT	0.333000													3	57					0.004672	0.00484504	0.004672	1	0
CGB7	94027	broad.mit.edu	37	19	49557632	49557632	+	Silent	SNP	G	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr19:49557632G>T	uc002pmd.2	-	3	779	c.414C>A	c.(412-414)TCC>TCA	p.S138S	CGB_uc010yad.1_Intron|CGB8_uc002pmc.2_Intron|CGB7_uc002pme.2_Silent_p.S138S	NM_033142	NP_149133	P01233	CGHB_HUMAN	chorionic gonadotropin, beta polypeptide 7	138					apoptosis|cell-cell signaling|cellular nitrogen compound metabolic process|female gamete generation|hormone biosynthetic process|peptide hormone processing|signal transduction	extracellular region|soluble fraction	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)	Choriogonadotropin alfa(DB00097)	TTGAGGAAGAGGAGGCCTGGA	0.637000													3	61					0.00024832	0.000260736	0.009096	1	0
ZNF845	91664	broad.mit.edu	37	19	53856730	53856730	+	Silent	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr19:53856730G>A	uc010ydv.1	+	4	2919	c.2802G>A	c.(2800-2802)AAG>AAA	p.K934K	ZNF845_uc010ydw.1_Silent_p.K934K	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	934	C2H2-type 26.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAATTCATAAGACAATTCATA	0.368000													3	28					0	0	0.009096	0	0
PPP1CB	5500	broad.mit.edu	37	2	29016792	29016792	+	Missense_Mutation	SNP	A	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr2:29016792A>T	uc002rmg.2	+	8	968	c.808A>T	c.(808-810)AAT>TAT	p.N270Y	PPP1CB_uc010ymj.1_Missense_Mutation_p.N242Y|PPP1CB_uc010yml.1_Missense_Mutation_p.N242Y|PPP1CB_uc002rmh.2_Missense_Mutation_p.N270Y|SPDYA_uc002rmi.2_5'UTR	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	270					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					TTCAGCCCCAAATTACTGTGG	0.348000													14	39					0	0	0.028581	0	0
CEP68	23177	broad.mit.edu	37	2	65296819	65296819	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr2:65296819C>G	uc002sdl.3	+	2	455	c.241C>G	c.(241-243)CCA>GCA	p.P81A	CEP68_uc002sdj.2_Missense_Mutation_p.P81A|CEP68_uc010yqb.1_Missense_Mutation_p.P81A|CEP68_uc002sdk.3_Missense_Mutation_p.P81A|CEP68_uc010yqc.1_Missense_Mutation_p.P81A|CEP68_uc010yqd.1_Missense_Mutation_p.P81A	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	81					centrosome organization	centrosome				skin(1)	1						AGCCCACCAGCCACAGGCCAG	0.632000													9	53					0	0	0.093190	0	0
CEP68	23177	broad.mit.edu	37	2	65296821	65296821	+	Silent	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr2:65296821A>G	uc002sdl.3	+	2	457	c.243A>G	c.(241-243)CCA>CCG	p.P81P	CEP68_uc002sdj.2_Silent_p.P81P|CEP68_uc010yqb.1_Silent_p.P81P|CEP68_uc002sdk.3_Silent_p.P81P|CEP68_uc010yqc.1_Silent_p.P81P|CEP68_uc010yqd.1_Silent_p.P81P	NM_015147	NP_055962	Q76N32	CEP68_HUMAN	centrosomal protein 68kDa	81					centrosome organization	centrosome				skin(1)	1						CCCACCAGCCACAGGCCAGTG	0.632000													10	53					0	0	0.105934	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460056	107460056	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr2:107460056C>T	uc002tdq.2	-	2	497	c.378G>A	c.(376-378)CCG>CCA	p.P126P	ST6GAL2_uc002tdr.2_Silent_p.P126P|ST6GAL2_uc002tds.3_Silent_p.P126P	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	126	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CGTCATCCTCCGGGTAGAAAG	0.552000													5	145					0	0	0.014758	0	0
CXCR2	3579	broad.mit.edu	37	2	218999633	218999633	+	Missense_Mutation	SNP	G	A	A	rs75759064	by1000genomes	TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr2:218999633G>A	uc002vgz.1	+	4	334	c.109G>A	c.(109-111)GCC>ACC	p.A37T	CXCR2_uc002vha.1_Missense_Mutation_p.A37T|CXCR2_uc002vhb.1_Missense_Mutation_p.A37T	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	37	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						ACTAGATGCCGCCCCATGTGA	0.448000													53	116					0	0	0.048971	0	0
PYGB	5834	broad.mit.edu	37	20	25261592	25261592	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr20:25261592C>G	uc002wup.2	+	11	1356	c.1247C>G	c.(1246-1248)GCC>GGC	p.A416G		NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	416					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	CAGCACGTGGCCGCGCTGTTT	0.647000													23	151					0	0	0.030593	0	0
C20orf132	140699	broad.mit.edu	37	20	35783518	35783518	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr20:35783518G>A	uc010zvu.1	-	11	1143	c.1052C>T	c.(1051-1053)ACG>ATG	p.T351M	C20orf132_uc002xgk.2_Intron|C20orf132_uc002xgm.2_Missense_Mutation_p.T351M|C20orf132_uc002xgn.2_Intron	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0		Myeloproliferative disorder(115;0.00878)				CATGCTGGCCGTGGCCCGTTC	0.502000													4	161					0	0	0.021553	0	0
UMODL1	89766	broad.mit.edu	37	21	43519274	43519274	+	Silent	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr21:43519274G>A	uc002zaf.1	+	7	1170	c.1170G>A	c.(1168-1170)ACG>ACA	p.T390T	UMODL1_uc002zad.1_Silent_p.T318T|UMODL1_uc002zae.1_Silent_p.T318T|UMODL1_uc002zag.1_Silent_p.T390T|UMODL1_uc010gow.1_Silent_p.T182T|UMODL1_uc002zai.1_Silent_p.T41T|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Silent_p.T41T|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Silent_p.T135T	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	390	Extracellular (Potential).|Fibronectin type-III 1.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TCTCCACCACGCTGACCATCA	0.607000													3	64					0	0	0.014758	0	0
NF2	4771	broad.mit.edu	37	22	30077486	30077486	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr22:30077486G>A	uc003age.3	+	15	2076	c.1633G>A	c.(1633-1635)GAA>AAA	p.E545K	NF2_uc003afy.3_Missense_Mutation_p.E545K|NF2_uc003afz.3_Missense_Mutation_p.E462K|NF2_uc003agf.3_Missense_Mutation_p.E545K|NF2_uc003agb.3_Missense_Mutation_p.E468K|NF2_uc003agc.3_Missense_Mutation_p.E507K|NF2_uc003agd.3_Intron|NF2_uc003agg.3_Missense_Mutation_p.E545K|NF2_uc003aga.3_Missense_Mutation_p.E503K|NF2_uc003agh.3_Missense_Mutation_p.E504K|NF2_uc003agi.3_Missense_Mutation_p.E462K|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Missense_Mutation_p.E507K|NF2_uc010gvp.2_Missense_Mutation_p.E209K|NF2_uc011akq.1_Missense_Mutation_p.E171K	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	545					actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.G502_I577del(1)|p.K525fs*18(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						ACTCAAGACAGAAATCGAGGC	0.498000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				5	134					0	0	0.014758	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120282	38120282	+	Silent	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr22:38120282C>T	uc003atr.2	+	7	1990	c.1719C>T	c.(1717-1719)GAC>GAT	p.D573D	TRIOBP_uc003atu.2_Silent_p.D401D|TRIOBP_uc003atq.1_Silent_p.D573D|TRIOBP_uc003ats.1_Silent_p.D401D	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	573					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					CCACACGAGACAACCCCAGAA	0.587000													7	155					0	0	0.047766	0	0
C4orf14	84273	broad.mit.edu	37	4	57834617	57834617	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr4:57834617C>G	uc003hck.2	-	4	1655	c.1580G>C	c.(1579-1581)AGA>ACA	p.R527T		NM_032313	NP_115689	Q8NC60	CD014_HUMAN	hypothetical protein LOC84273	527							GTP binding			ovary(1)|breast(1)	2	Glioma(25;0.08)|all_neural(26;0.181)					CACAAAAGTTCTTGGAACAAT	0.328000													4	69					0	0	0.009096	0	0
UGT2B11	10720	broad.mit.edu	37	4	70080096	70080096	+	Silent	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr4:70080096G>A	uc003heh.2	-	1	354	c.345C>T	c.(343-345)ATC>ATT	p.I115I	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	115					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						ATTCCCACAGGATTTCTTGTT	0.299000													7	22					0	0	0.029380	0	0
MTTP	4547	broad.mit.edu	37	4	100532549	100532549	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr4:100532549T>C	uc003hvc.3	+	15	2184	c.1928T>C	c.(1927-1929)CTA>CCA	p.L643P	MTTP_uc011cej.1_Missense_Mutation_p.L670P	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	643	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TCTGGCATTCTAAGGAGAAGT	0.433000													7	156					0	0	0.047766	0	0
SEMA6A	57556	broad.mit.edu	37	5	115803413	115803413	+	Missense_Mutation	SNP	G	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr5:115803413G>C	uc010jck.2	-	18	2469	c.1760C>G	c.(1759-1761)ACC>AGC	p.T587S	SEMA6A_uc003krx.3_Missense_Mutation_p.T604S|SEMA6A_uc003krv.3_Missense_Mutation_p.T14S|SEMA6A_uc003krw.3_Intron|SEMA6A_uc010jcj.2_Missense_Mutation_p.T131S	NM_020796	NP_065847	Q9H2E6	SEM6A_HUMAN	sema domain, transmembrane domain (TM), and	587	Extracellular (Potential).				apoptosis|axon guidance|cell surface receptor linked signaling pathway|cytoskeleton organization|organ morphogenesis	axon|integral to membrane|plasma membrane	receptor activity			ovary(2)	2		all_cancers(142;0.00316)|all_epithelial(76;5.71e-05)|Prostate(80;0.00845)|Ovarian(225;0.0796)|Lung NSC(810;0.171)|all_lung(232;0.203)		OV - Ovarian serous cystadenocarcinoma(64;1.59e-08)|Epithelial(69;2e-08)|all cancers(49;5.7e-08)|COAD - Colon adenocarcinoma(49;0.151)		ATCTGATGTGGTTGTGCTGGG	0.522000													13	26					0	0	0.024245	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482006	140482006	+	Silent	SNP	G	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr5:140482006G>C	uc003lio.2	+	1	1773	c.1773G>C	c.(1771-1773)GCG>GCC	p.A591A	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	591	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGGTGGTGGCGGTGGACGGCG	0.711000													5	167					0	0	0.014758	0	0
GABRA6	2559	broad.mit.edu	37	5	161128598	161128598	+	Missense_Mutation	SNP	C	T	T			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr5:161128598C>T	uc003lyu.2	+	9	1519	c.1181C>T	c.(1180-1182)GCG>GTG	p.A394V	GABRA6_uc003lyv.2_Missense_Mutation_p.A165V	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	394	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTCACGAGAGCGCCCATCTTA	0.473000										TCGA Ovarian(5;0.080)			16	55					0	0	0.049695	0	0
RGS14	10636	broad.mit.edu	37	5	176792987	176792987	+	Splice_Site	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr5:176792987T>C	uc003mgf.2	+	2	249	c.67_splice	c.e2+2	p.E23_splice	RGS14_uc003mgg.1_5'Flank|RGS14_uc003mgh.2_5'Flank|RGS14_uc003mgi.2_5'Flank	NM_006480	NP_006471	O43566	RGS14_HUMAN	regulator of G-protein signalling 14						chromosome segregation|long-term memory|long-term synaptic potentiation|negative regulation of ERK1 and ERK2 cascade|negative regulation of MAP kinase activity|negative regulation of synaptic plasticity|nucleocytoplasmic transport|platelet-derived growth factor receptor signaling pathway|positive regulation of neurogenesis|regulation of DNA-dependent transcription in response to stress|regulation of G-protein coupled receptor protein signaling pathway|response to oxidative stress|spindle organization|visual learning|zygote asymmetric cell division	cell junction|centrosome|dendritic spine|microtubule|PML body|postsynaptic density|postsynaptic membrane|spindle pole	GDP-dissociation inhibitor activity|GTPase activator activity|microtubule binding|receptor signaling complex scaffold activity|receptor signaling protein activity			lung(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGATGGAGGTAAGTGACAGA	0.567000													4	210					0	0	0.038147	0	0
BAT5	7920	broad.mit.edu	37	6	31668779	31668779	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr6:31668779G>A	uc003nvy.1	-	4	313	c.283C>T	c.(283-285)CCG>TCG	p.P95S	BAT5_uc003nvx.1_5'UTR|BAT5_uc011dny.1_Missense_Mutation_p.P62S|BAT5_uc003nvz.1_5'UTR|BAT5_uc011dnz.1_5'UTR|BAT5_uc010jtc.1_RNA|BAT5_uc011doa.1_5'UTR	NM_021160	NP_066983	O95870	ABHGA_HUMAN	HLA-B associated transcript 5	95	Helical; (Potential).					integral to membrane	hydrolase activity|protein binding				0						TGAGAAAACGGCACCACTTTG	0.537000													12	61					0	0	0.033300	0	0
ZNF318	24149	broad.mit.edu	37	6	43310590	43310590	+	Missense_Mutation	SNP	G	A	A	rs147313268	byFrequency	TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr6:43310590G>A	uc003oux.2	-	7	3178	c.3100C>T	c.(3100-3102)CGT>TGT	p.R1034C	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1034				RT -> CI (in Ref. 1; AAD47387/AAD17298).	meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTCTTAGTACGAAACTTCTCA	0.433000													6	28					0	0	0.021553	0	0
DOPEY1	23033	broad.mit.edu	37	6	83863326	83863326	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr6:83863326C>G	uc003pjs.1	+	31	6486	c.6226C>G	c.(6226-6228)CTC>GTC	p.L2076V	DOPEY1_uc011dyy.1_Missense_Mutation_p.L2067V|DOPEY1_uc010kbl.1_Missense_Mutation_p.L2067V|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2076					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		TGTGCCCTACCTCAGAAATCA	0.308000													6	62					0	0	0.021553	0	0
AIM1	202	broad.mit.edu	37	6	106992514	106992514	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr6:106992514A>G	uc003prh.2	+	10	4371	c.3884A>G	c.(3883-3885)GAC>GGC	p.D1295G	AIM1_uc003pri.2_Missense_Mutation_p.D99G	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1295	Beta/gamma crystallin 'Greek key' 6.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		GAATACAGGGACTGGAAAGCC	0.418000													4	67					0	0	0.009096	0	0
PCMT1	5110	broad.mit.edu	37	6	150111138	150111138	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr6:150111138A>G	uc003qne.2	+	4	448	c.415A>G	c.(415-417)AAA>GAA	p.K139E	PCMT1_uc003qna.2_Missense_Mutation_p.K139E|PCMT1_uc003qnb.2_Missense_Mutation_p.K139E|PCMT1_uc011eeg.1_Missense_Mutation_p.K104E|PCMT1_uc003qnc.2_Missense_Mutation_p.K18E|PCMT1_uc003qnd.2_Intron|PCMT1_uc003qnf.2_Intron	NM_005389	NP_005380			protein-L-isoaspartate (D-aspartate)											ovary(1)	1		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.221)	OV - Ovarian serous cystadenocarcinoma(155;5.63e-13)|GBM - Glioblastoma multiforme(68;0.207)		TGAAGGAGCTAAAGCTCTTGA	0.378000													40	73					0	0	0.048971	0	0
C7orf10	79783	broad.mit.edu	37	7	40899974	40899974	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr7:40899974G>A	uc003thn.1	+	14	1258	c.1213G>A	c.(1213-1215)GGG>AGG	p.G405R	C7orf10_uc003thm.1_Missense_Mutation_p.G401R|C7orf10_uc003tho.1_Missense_Mutation_p.G357R|C7orf10_uc003thp.1_RNA	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	412							transferase activity			ovary(2)	2						CCCGCTGCTCGGGCAGCACAC	0.567000													31	140					0	0	0.080422	0	0
MUC17	140453	broad.mit.edu	37	7	100696423	100696423	+	Silent	SNP	G	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr7:100696423G>C	uc003uxp.1	+	10	13313	c.13260G>C	c.(13258-13260)GTG>GTC	p.V4420V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4420	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AGAGAGAGGTGAAACGGTGAG	0.567000													7	26					0	0	0.038147	0	0
OR2A25	392138	broad.mit.edu	37	7	143771775	143771775	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr7:143771775G>A	uc011ktx.1	+	1	463	c.463G>A	c.(463-465)GCC>ACC	p.A155T		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AGTCTTATTGGCCCTTGTCCA	0.458000													6	138					0	0	0.021553	0	0
MYOM2	9172	broad.mit.edu	37	8	2040226	2040226	+	Silent	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr8:2040226G>A	uc003wpx.3	+	16	2019	c.1881G>A	c.(1879-1881)TCG>TCA	p.S627S	MYOM2_uc011kwi.1_Silent_p.S52S	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	627	Fibronectin type-III 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCAAGACGTCGGTGGTGGTGC	0.577000													16	174					0	0	0.043863	0	0
LACTB2	51110	broad.mit.edu	37	8	71581352	71581352	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr8:71581352C>G	uc011lfd.1	-	1	96	c.4G>C	c.(4-6)GCT>CCT	p.A2P	LACTB2_uc003xyp.2_Missense_Mutation_p.A2P|XKR9_uc003xyq.2_5'Flank|XKR9_uc010lze.2_5'Flank|XKR9_uc010lzd.2_5'Flank	NM_016027	NP_057111	Q53H82	LACB2_HUMAN	lactamase, beta 2	2							hydrolase activity|metal ion binding			ovary(1)	1	Breast(64;0.0716)		Epithelial(68;0.00319)|all cancers(69;0.0175)|OV - Ovarian serous cystadenocarcinoma(28;0.0628)|BRCA - Breast invasive adenocarcinoma(89;0.166)			AGTACAGCAGCCATTCCCGCC	0.642000											OREG0018822	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	29					0	0	0.009096	0	0
C9orf79	286234	broad.mit.edu	37	9	90500727	90500727	+	Missense_Mutation	SNP	A	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr9:90500727A>G	uc004app.3	+	4	1360	c.1325A>G	c.(1324-1326)GAC>GGC	p.D442G	C9orf79_uc004apo.1_Missense_Mutation_p.D254G	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	442						integral to membrane				ovary(3)	3						CTTTTCTGGGACCTCCCCTCT	0.567000													6	146					0	0	0.038147	0	0
Unknown	0	broad.mit.edu	37	9	90746257	90746257	+	Silent	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr9:90746257T>C	uc011lti.1	-	4	1724	c.1695A>G	c.(1693-1695)AGA>AGG	p.R565R						SubName: Full=cDNA FLJ59639;																		TCTCTGTGCGTCTTAATAAAT	0.522000													14	99					0	0	0.020292	0	0
COL5A1	1289	broad.mit.edu	37	9	137620651	137620651	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr9:137620651G>A	uc004cfe.2	+	6	1304	c.922G>A	c.(922-924)GAG>AAG	p.E308K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	308	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGAGGTCCCCGAGGTCTGGGC	0.642000													3	63					0	0	0.004672	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070695	141070695	+	Missense_Mutation	SNP	G	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr9:141070695G>A	uc004com.2	+	4	359	c.98G>A	c.(97-99)CGC>CAC	p.R33H	TUBBP5_uc010ncq.2_Silent_p.T210T					RecName: Full=Putative tubulin beta-4q chain;												0						GCCAAGGGACGCTACACCGAA	0.592000													5	9					0	0	0.038147	0	0
AR	367	broad.mit.edu	37	X	66765383	66765383	+	Missense_Mutation	SNP	T	C	C			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chrX:66765383T>C	uc004dwu.1	+	1	1510	c.395T>C	c.(394-396)GTC>GCC	p.V132A	AR_uc011mpd.1_Missense_Mutation_p.V132A|AR_uc011mpe.1_RNA|AR_uc011mpf.1_Missense_Mutation_p.V132A	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	130	Modulating.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	AGAGGTTGCGTCCCAGAGCCT	0.677000									Androgen_Insensitivity_Syndrome				3	2					0	0	0.004672	0	0
TEX11	56159	broad.mit.edu	37	X	70073157	70073157	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chrX:70073157C>A	uc004dyl.2	-	7	553	c.391G>T	c.(391-393)GAA>TAA	p.E131*	TEX11_uc004dym.2_Nonsense_Mutation_p.E116*	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	131							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TCCAACCATTCTTTTCCTATT	0.343000													16	37					3.32936e-07	3.54008e-07	0.038395	1	0
ATRX	546	broad.mit.edu	37	X	76813014	76813014	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chrX:76813014C>A	uc004ecp.3	-	30	6839	c.6607G>T	c.(6607-6609)GAG>TAG	p.E2203*	ATRX_uc004ecq.3_Nonsense_Mutation_p.E2165*|ATRX_uc004eco.3_Nonsense_Mutation_p.E1988*	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2203	Helicase C-terminal.				DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TCAGTAAGCTCATTCATAGTA	0.393000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						47	57					8.04919e-23	8.78093e-23	0.048971	1	0
MBNL3	55796	broad.mit.edu	37	X	131524902	131524902	+	Missense_Mutation	SNP	C	G	G			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chrX:131524902C>G	uc004ewv.3	-	4	823	c.744G>C	c.(742-744)CAG>CAC	p.Q248H	uc004ewr.1_Intron|MBNL3_uc004eww.2_Missense_Mutation_p.Q152H|MBNL3_uc004ews.2_Missense_Mutation_p.Q152H|MBNL3_uc004ewt.2_Missense_Mutation_p.Q198H|MBNL3_uc011muz.1_Missense_Mutation_p.Q152H|MBNL3_uc004ewu.3_Missense_Mutation_p.Q248H|MBNL3_uc004ewx.1_Missense_Mutation_p.Q198H	NM_018388	NP_060858	Q9NUK0	MBNL3_HUMAN	muscleblind-like 3 isoform G	248					mRNA processing|multicellular organismal development|regulation of RNA splicing|RNA splicing	Golgi apparatus|nucleus	nucleic acid binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					AATGGTTCATCTGATGATGAG	0.458000													5	79					0	0	0.014758	0	0
LINGO4	339398	broad.mit.edu	37	1	151773603	151773603	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr1:151773603delA	uc001ezf.1	-	2	1768	c.1578delT	c.(1576-1578)TTTfs	p.F526fs		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	526	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TGCTATCCAGAAAAAAAGGCC	0.582													7	218	---	---	---	---					
ZACN	353174	broad.mit.edu	37	17	74076491	74076492	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chr17:74076491_74076492delCT	uc002jqn.2	+	5	613_614	c.530_531delCT	c.(529-531)GCTfs	p.A177fs	ZACN_uc002jqo.2_RNA|ZACN_uc010dgu.2_Intron	NM_180990	NP_851321	Q401N2	ZACN_HUMAN	zinc activated ligand-gated ion channel	177	Extracellular (Potential).				response to zinc ion	integral to membrane|membrane fraction|plasma membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity|receptor activity				0						AGCTTCTACGCTCTCAGCAACA	0.644													60	94	---	---	---	---					
SRPK3	26576	broad.mit.edu	37	X	153046565	153046566	+	Frame_Shift_Ins	INS	-	A	A			TCGA-DU-7309-01A-11D-2086-08	TCGA-DU-7309-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	b47b5427-1159-4b16-a9b5-814d4e7dcffa	1125ff76-1f9b-4396-a4bb-cff53b6dd447	g.chrX:153046565_153046566insA	uc004fil.2	+	1	56_57	c.24_25insA	c.(22-27)GGTGGGfs	p.G8fs	SRPK3_uc004fik.2_Intron|SRPK3_uc010nul.2_5'UTR|SRPK3_uc004fin.2_Frame_Shift_Ins_p.G8fs|SRPK3_uc004fim.2_Frame_Shift_Ins_p.G8fs	NM_014370	NP_055185	Q9UPE1	SRPK3_HUMAN	serine arginine rich protein-specific kinase 3	8_9					cell differentiation|muscle organ development|muscle tissue development		ATP binding|protein serine/threonine kinase activity			pancreas(2)|lung(1)	3	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					CGggcggtggtggggacagcgg	0.579													2	4	---	---	---	---					
