Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLIC4	25932	broad.mit.edu	37	1	25140630	25140630	+	Silent	SNP	A	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr1:25140630A>G	uc001bjo.2	+	3	513	c.228A>G	c.(226-228)CCA>CCG	p.P76P	CLIC4_uc001bjn.2_RNA|CLIC4_uc001bjp.1_Silent_p.P56P	NM_013943	NP_039234	Q9Y696	CLIC4_HUMAN	chloride intracellular channel 4	76	Required for insertion into the membrane (Probable).				cellular response to calcium ion|establishment or maintenance of apical/basal cell polarity|keratinocyte differentiation|negative regulation of cell migration|regulation of cytoskeleton organization	actin cytoskeleton|apical part of cell|cell surface|cell-cell junction|centrosome|chloride channel complex|cytoplasmic vesicle membrane|cytosol|microvillus|midbody|mitochondrion|nuclear matrix|perinuclear region of cytoplasm|soluble fraction	voltage-gated chloride channel activity				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000778)|all_lung(284;0.00106)|Ovarian(437;0.00764)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0479)|OV - Ovarian serous cystadenocarcinoma(117;1.06e-24)|Colorectal(126;1.03e-07)|COAD - Colon adenocarcinoma(152;4.93e-06)|STAD - Stomach adenocarcinoma(196;0.000418)|GBM - Glioblastoma multiforme(114;0.000451)|BRCA - Breast invasive adenocarcinoma(304;0.00215)|KIRC - Kidney renal clear cell carcinoma(1967;0.00216)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.18)		CCCACCCACCATTTATAACTT	0.398													12	69					0	0	0.093190	0	0
PTPRU	10076	broad.mit.edu	37	1	29585123	29585123	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr1:29585123C>A	uc001bru.2	+	3	422	c.312C>A	c.(310-312)TAC>TAA	p.Y104*	PTPRU_uc001brv.2_Nonsense_Mutation_p.Y104*|PTPRU_uc001brw.2_Nonsense_Mutation_p.Y104*|PTPRU_uc009vtq.2_Nonsense_Mutation_p.Y104*|PTPRU_uc009vtr.2_Nonsense_Mutation_p.Y104*	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	104	Extracellular (Potential).|MAM.				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		AGTTCAGCTACTTCCTGTACA	0.602													19	190					1.9806e-07	2.40779e-07	0.069288	1	0
KIAA0754	643314	broad.mit.edu	37	1	39879328	39879328	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr1:39879328G>A	uc009vvt.1	+	1	4153	c.3391G>A	c.(3391-3393)GCC>ACC	p.A1131T	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	995	Ala-rich.|10.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGAGGAGCCCGCCTCCCCAGC	0.711													3	13					0	0	0.004672	0	0
SH3BP5L	80851	broad.mit.edu	37	1	249107313	249107313	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr1:249107313G>A	uc001iew.1	-	6	1138	c.586C>T	c.(586-588)CGA>TGA	p.R196*	SH3BP5L_uc010pzp.1_Nonsense_Mutation_p.R89*|SH3BP5L_uc010pzq.1_Nonsense_Mutation_p.R164*|SH3BP5L_uc001iev.1_Nonsense_Mutation_p.R77*	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	196	Potential.										0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			CGAGTCACTCGCTGGTGCTCC	0.632													3	24					0	0	0.009096	0	0
ENTPD1	953	broad.mit.edu	37	10	97624597	97624597	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr10:97624597G>A	uc001klh.3	+	9	1629	c.1305G>A	c.(1303-1305)GAG>GAA	p.E435E	ENTPD1_uc001kli.3_Silent_p.E442E|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Silent_p.E447E|ENTPD1_uc010qok.1_Silent_p.E327E|ENTPD1_uc010qol.1_Silent_p.E327E|ENTPD1_uc010qom.1_Silent_p.E394E|ENTPD1_uc010qon.1_Silent_p.E297E|ENTPD1_uc009xva.2_Silent_p.E297E|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	435	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		ATTCCTGGGAGCACATCCATT	0.502													3	83					0	0	0.009096	0	0
POLL	27343	broad.mit.edu	37	10	103343337	103343337	+	Silent	SNP	G	A	A	rs148400497	byFrequency	TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr10:103343337G>A	uc001ktg.1	-	5	1759	c.993C>T	c.(991-993)AGC>AGT	p.S331S	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_5'Flank|POLL_uc001kte.1_Silent_p.S23S|POLL_uc001kth.1_Silent_p.S56S|POLL_uc001kti.1_Silent_p.S331S|POLL_uc001ktj.1_Silent_p.S331S|POLL_uc001ktf.2_Silent_p.S239S|POLL_uc001ktk.1_Silent_p.S70S|POLL_uc010qqa.1_Silent_p.S70S|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Silent_p.S331S|POLL_uc001ktl.2_Silent_p.S243S|POLL_uc010qqc.1_Silent_p.S23S|POLL_uc010qqd.1_3'UTR	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	331					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		AGACAGGCACGCTCTCACTGA	0.562								DNA_polymerases_(catalytic_subunits)					6	78					0	0	0.038147	0	0
USP47	55031	broad.mit.edu	37	11	11941985	11941985	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr11:11941985C>G	uc001mjq.1	+	11	1985	c.1222C>G	c.(1222-1224)CGA>GGA	p.R408G	USP47_uc001mjr.2_Missense_Mutation_p.R320G|USP47_uc001mjs.2_Missense_Mutation_p.R388G	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	408					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		ACTGAATGATCGAATGACATT	0.318													3	78					0	0	0.004672	0	0
FAT3	120114	broad.mit.edu	37	11	92523169	92523169	+	Missense_Mutation	SNP	G	A	A	rs141835444	by1000genomes	TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr11:92523169G>A	uc001pdj.3	+	7	4413	c.4396G>A	c.(4396-4398)GAT>AAT	p.D1466N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1466	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCCGAATTACGATGTGACAAT	0.408										TCGA Ovarian(4;0.039)			4	148					0	0	0.009096	0	0
VWA5A	4013	broad.mit.edu	37	11	123989697	123989697	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr11:123989697G>A	uc001pzu.2	+	7	870	c.661G>A	c.(661-663)GGA>AGA	p.G221R	VWA5A_uc001pzr.2_Missense_Mutation_p.G221R|VWA5A_uc001pzs.2_Missense_Mutation_p.G221R|VWA5A_uc010sae.1_Missense_Mutation_p.G237R|VWA5A_uc001pzt.2_Missense_Mutation_p.G221R	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	221										upper_aerodigestive_tract(1)|ovary(1)	2						CCTGGCTGCTGGACACAAGTT	0.522													3	52					0	0	0.009096	0	0
GPR162	27239	broad.mit.edu	37	12	6933475	6933475	+	Silent	SNP	C	T	T	rs146153056		TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr12:6933475C>T	uc001qqw.1	+	2	946	c.411C>T	c.(409-411)GCC>GCT	p.A137A	GPR162_uc010sfn.1_Silent_p.A137A|GPR162_uc001qqx.1_Intron|GPR162_uc009zfd.1_Intron|GPR162_uc001qqy.1_5'Flank	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	137	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CACTGCATGCCGTCATGGGCA	0.617													28	51					0	0	0.030593	0	0
ATN1	1822	broad.mit.edu	37	12	7048208	7048208	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr12:7048208G>A	uc001qrw.1	+	7	3319	c.3082G>A	c.(3082-3084)GCA>ACA	p.A1028T	ATN1_uc001qrx.1_Missense_Mutation_p.A1028T	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	1028					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						GAGGCAGCACGCAGAAAGGGT	0.662													4	109					0	0	0.014758	0	0
FREM2	341640	broad.mit.edu	37	13	39265629	39265629	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr13:39265629T>C	uc001uwv.2	+	1	4457	c.4148T>C	c.(4147-4149)GTC>GCC	p.V1383A		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1383	Extracellular (Potential).|CSPG 9.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		ATTCAGTATGTCCATTTGGGG	0.413													11	156					0	0	0.080935	0	0
TBC1D4	9882	broad.mit.edu	37	13	75861015	75861015	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr13:75861015G>A	uc001vjl.1	-	21	4157	c.3810C>T	c.(3808-3810)CCC>CCT	p.P1270P	TBC1D4_uc010tht.1_Silent_p.P480P|TBC1D4_uc010thu.1_Silent_p.P427P|TBC1D4_uc010aer.2_Silent_p.P1262P|TBC1D4_uc010aes.2_Silent_p.P1207P	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1270						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GAGCATCCGCGGGCAGCAGCT	0.453													3	56					0	0	0.004672	0	0
RFX7	64864	broad.mit.edu	37	15	56387426	56387426	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr15:56387426G>A	uc010bfn.2	-	9	2500	c.2500C>T	c.(2500-2502)CAG>TAG	p.Q834*	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Nonsense_Mutation_p.Q648*	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	737					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						CTATGTAGCTGCTGGCTATAT	0.393													8	132					0	0	0.047766	0	0
EFTUD1	79631	broad.mit.edu	37	15	82554109	82554109	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr15:82554109T>C	uc002bgt.1	-	2	180	c.11A>G	c.(10-12)AAC>AGC	p.N4S	EFTUD1_uc002bgu.1_Missense_Mutation_p.N4S|FAM154B_uc002bgv.2_5'Flank|FAM154B_uc010unr.1_5'Flank|FAM154B_uc010uns.1_5'Flank	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	4					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						ATCCAAACTGTTGAGCACCAT	0.333													21	94					0	0	0.069288	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552													3	83					0	0	0.004672	0	0
TMCO7	79613	broad.mit.edu	37	16	68900994	68900994	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr16:68900994G>A	uc002ewi.3	+	4	877	c.865G>A	c.(865-867)GTG>ATG	p.V289M	TMCO7_uc002ewh.2_Missense_Mutation_p.V289M	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	289						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		CTGCACAGATGTGAAGACACA	0.473													38	77					0	0	0.111260	0	0
CLDN7	1366	broad.mit.edu	37	17	7163696	7163696	+	Silent	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:7163696C>T	uc002gfm.3	-	4	1066	c.633G>A	c.(631-633)GTG>GTA	p.V211V	CLDN7_uc010cmc.2_3'UTR|CLDN7_uc002gfn.3_Silent_p.V211V	NM_001307	NP_001298	O95471	CLD7_HUMAN	claudin 7	211	Cytoplasmic (Potential).|Interactions with TJP1, TJP2 and TJP3 (By similarity).				calcium-independent cell-cell adhesion	integral to membrane|lateral plasma membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						TCCCAGGTCACACATACTCCT	0.597													7	153					0	0	0.047766	0	0
DNAH2	146754	broad.mit.edu	37	17	7708392	7708392	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:7708392G>A	uc002giu.1	+	59	9314	c.9300G>A	c.(9298-9300)CGG>CGA	p.R3100R	DNAH2_uc010cnm.1_Intron	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3100	TPR 3.|Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				AGGCCATGCGGGTACCAGGGG	0.582													3	67					0	0	0.014758	0	0
KDM6B	23135	broad.mit.edu	37	17	7752905	7752905	+	Missense_Mutation	SNP	C	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:7752905C>A	uc002giw.1	+	11	3675	c.3299C>A	c.(3298-3300)CCC>CAC	p.P1100H	KDM6B_uc002gix.2_Missense_Mutation_p.P402H	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	1100					inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						GAGGGGCCCCCCAAGGAGCTG	0.632													3	30					2.56e-06	3.05231e-06	0.009096	1	0
MYH8	4626	broad.mit.edu	37	17	10303716	10303716	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:10303716G>A	uc002gmm.2	-	27	3821	c.3726C>T	c.(3724-3726)TCC>TCT	p.S1242S	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1242	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CCTTGGCTTTGGAAATGGCCT	0.438									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				59	180					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	G	G	rs149119138	by1000genomes	TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:21731144T>G	uc002gyy.3	+	2	571	c.446T>G	c.(445-447)CTG>CGG	p.L149R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCTGAGAGGTGGT	0.542													3	80					0	0	0.004672	0	0
SLC25A39	51629	broad.mit.edu	37	17	42399117	42399117	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:42399117C>T	uc002ign.2	-	6	497	c.343G>A	c.(343-345)GTG>ATG	p.V115M	SLC25A39_uc002igm.2_Missense_Mutation_p.V107M|SLC25A39_uc002igo.2_Missense_Mutation_p.V107M|SLC25A39_uc010wiw.1_Missense_Mutation_p.V92M|SLC25A39_uc010czu.2_Translation_Start_Site|SLC25A39_uc010wix.1_Missense_Mutation_p.V107M|SLC25A39_uc010wiy.1_Missense_Mutation_p.V100M	NM_001143780	NP_001137252	Q9BZJ4	S2539_HUMAN	solute carrier family 25, member 39 isoform a	115	Solcar 1.				heme biosynthetic process|transport	integral to membrane|mitochondrial inner membrane				upper_aerodigestive_tract(1)	1		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		TCGTGCCTCACGATCTTCACG	0.637													13	38					0	0	0.093190	0	0
CACNA1G	8913	broad.mit.edu	37	17	48652951	48652951	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:48652951G>A	uc002irk.1	+	8	1560	c.1188G>A	c.(1186-1188)ACG>ACA	p.T396T	CACNA1G_uc002iri.1_Silent_p.T396T|CACNA1G_uc002irj.1_Silent_p.T396T|CACNA1G_uc002irl.1_Silent_p.T396T|CACNA1G_uc002irm.1_Silent_p.T396T|CACNA1G_uc002irn.1_Silent_p.T396T|CACNA1G_uc002iro.1_Silent_p.T396T|CACNA1G_uc002irp.1_Silent_p.T396T|CACNA1G_uc002irq.1_Silent_p.T396T|CACNA1G_uc002irr.1_Silent_p.T396T|CACNA1G_uc002irs.1_Silent_p.T396T|CACNA1G_uc002irt.1_Silent_p.T396T|CACNA1G_uc002irv.1_Silent_p.T396T|CACNA1G_uc002irw.1_Silent_p.T396T|CACNA1G_uc002iru.1_Silent_p.T396T|CACNA1G_uc002irx.1_Silent_p.T309T|CACNA1G_uc002iry.1_Silent_p.T309T|CACNA1G_uc002irz.1_Silent_p.T309T|CACNA1G_uc002isa.1_Silent_p.T309T|CACNA1G_uc002isb.1_Silent_p.T309T|CACNA1G_uc002isc.1_Silent_p.T309T|CACNA1G_uc002isd.1_Silent_p.T309T|CACNA1G_uc002ise.1_Silent_p.T309T|CACNA1G_uc002isf.1_Silent_p.T309T|CACNA1G_uc002isg.1_Silent_p.T309T|CACNA1G_uc002ish.1_Silent_p.T309T|CACNA1G_uc002isi.1_Silent_p.T309T	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	396	Cytoplasmic (Potential).|I.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TGATTGCCACGCAGTTCTCAG	0.572													19	46					0	0	0.030593	0	0
KANK3	256949	broad.mit.edu	37	19	8398111	8398111	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr19:8398111C>T	uc010dwa.2	-	7	1789	c.1723G>A	c.(1723-1725)GCA>ACA	p.A575T	KANK3_uc002mjp.1_Missense_Mutation_p.R120H	NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	575											0						AGGCGCACTGCGCCCTGCAAG	0.697													3	33					0	0	0.014758	0	0
HAS1	3036	broad.mit.edu	37	19	52220383	52220383	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr19:52220383C>T	uc002pxo.1	-	3	801	c.766G>A	c.(766-768)GAG>AAG	p.E256K	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_Missense_Mutation_p.E221K|HAS1_uc002pxn.1_Missense_Mutation_p.E263K|HAS1_uc002pxp.1_Missense_Mutation_p.E255K	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	256	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CGGGGGTCCTCGTCCAGTACC	0.622													13	69					0	0	0.033300	0	0
SUPT7L	9913	broad.mit.edu	37	2	27876400	27876400	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:27876400G>A	uc002rlh.1	-	6	1540	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	SUPT7L_uc002rli.1_Silent_p.S399S|SUPT7L_uc010ymf.1_Silent_p.S264S|SUPT7L_uc002rlj.1_Silent_p.S397S|SUPT7L_uc010ezh.1_Silent_p.S397S	NM_014860	NP_055675	O94864	ST65G_HUMAN	SPTF-associated factor 65 gamma	399					histone H3 acetylation|maintenance of protein location in nucleus|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					AAACAGGGGAGGACCCCATGA	0.498													3	85					0	0	0.004672	0	0
GEMIN6	79833	broad.mit.edu	37	2	39008705	39008705	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:39008705G>A	uc002rrc.2	+	3	291	c.175G>A	c.(175-177)GGA>AGA	p.G59R	GEMIN6_uc002rrb.2_RNA	NM_024775	NP_079051	Q8WXD5	GEMI6_HUMAN	gemin 6	59					ncRNA metabolic process|spliceosomal snRNP assembly|spliceosome assembly	Cajal body|cytosol|spliceosomal complex	protein binding				0		all_hematologic(82;0.21)				GTCTGTGACCGGAATTATGGG	0.443													35	100					0	0	0.074837	0	0
ACTG2	72	broad.mit.edu	37	2	74146597	74146597	+	Silent	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:74146597C>T	uc002sjw.2	+	9	1148	c.1026C>T	c.(1024-1026)ATC>ATT	p.I342I	ACTG2_uc010fey.2_Silent_p.I342I|ACTG2_uc010yrn.1_Silent_p.I299I	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	342					muscle contraction	cytoskeleton|cytosol	ATP binding				0						CAGTCTGGATCGGGGGCTCTA	0.527													10	85					0	0	0.080935	0	0
KDM3A	55818	broad.mit.edu	37	2	86697513	86697513	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:86697513G>A	uc002sri.3	+	11	2033	c.1706G>A	c.(1705-1707)CGC>CAC	p.R569H	KDM3A_uc010ytj.1_Missense_Mutation_p.R569H|KDM3A_uc010ytk.1_Missense_Mutation_p.R517H	NM_018433	NP_060903	Q9Y4C1	KDM3A_HUMAN	jumonji domain containing 1A	569					androgen receptor signaling pathway|cell differentiation|formaldehyde biosynthetic process|histone H3-K9 demethylation|hormone-mediated signaling pathway|positive regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	5						GTGTTTTGCCGCTTCTTTCAC	0.453													4	99					0	0	0.014758	0	0
UXS1	80146	broad.mit.edu	37	2	106746145	106746145	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:106746145T>C	uc002tdm.2	-	7	645	c.547A>G	c.(547-549)ACA>GCA	p.T183A	UXS1_uc002tdl.2_Missense_Mutation_p.T15A|UXS1_uc002tdn.2_Missense_Mutation_p.T188A|UXS1_uc002tdo.2_Missense_Mutation_p.T126A|UXS1_uc010ywh.1_Intron	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	183	Lumenal (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						ATGTTTAATGTCCCAATCGTA	0.378													12	20					0	0	0.020292	0	0
NCKAP5	344148	broad.mit.edu	37	2	133721292	133721292	+	Splice_Site	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:133721292C>T	uc002ttp.2	-	8	953	c.579_splice	c.e8+1	p.E193_splice	NCKAP5_uc002ttq.2_Splice_Site_p.E193_splice|NCKAP5_uc002tts.1_Splice_Site_p.E168_splice	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1								protein binding				0						TCATTTCTTACCTCTAGAGCT	0.368													14	46					0	0	0.024245	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393			Mis		gliobastoma 								29	58					0	0	0.059317	0	0
FAM182B	728882	broad.mit.edu	37	20	25848617	25848617	+	RNA	SNP	A	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr20:25848617A>G	uc002wvd.1	-	1		c.170T>C								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggcaggcctgaggctgggatg	0													3	10					0	0	0.009096	0	0
C20orf106	200232	broad.mit.edu	37	20	55101032	55101032	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr20:55101032G>A	uc002xxx.2	+	2	502	c.422G>A	c.(421-423)AGT>AAT	p.S141N	GCNT7_uc010zzg.1_5'Flank|C20orf107_uc010zzh.1_Intron	NM_001012971	NP_001012989	Q5JX71	CT106_HUMAN	hypothetical protein LOC200232 precursor	141	Cytoplasmic (Potential).					integral to membrane					0			Colorectal(105;0.202)			GCAACAGGTAGTGGCAGTAAC	0.448													5	92					0	0	0.021553	0	0
MYT1	4661	broad.mit.edu	37	20	62839350	62839350	+	Silent	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr20:62839350G>A	uc002yii.2	+	7	1165	c.801G>A	c.(799-801)GAG>GAA	p.E267E	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	267	Glu-rich.				cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					aggaggaggaggaagaggagg	0.209													3	10					0	0	0.004672	0	0
C3orf15	89876	broad.mit.edu	37	3	119465994	119465994	+	Silent	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr3:119465994C>T	uc003ede.3	+	15	2012	c.1935C>T	c.(1933-1935)TCC>TCT	p.S645S	C3orf15_uc010hqz.2_Silent_p.S583S|C3orf15_uc011bjd.1_Silent_p.S519S|C3orf15_uc011bje.1_Silent_p.S625S|C3orf15_uc003edg.3_5'Flank	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	481						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		CTATAAGCTCCTACCTAGAAG	0.373													12	88					0	0	0.024245	0	0
FBXO40	51725	broad.mit.edu	37	3	121340407	121340407	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr3:121340407C>G	uc003eeg.2	+	3	341	c.131C>G	c.(130-132)GCC>GGC	p.A44G		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	44					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		CTCTGTGGTGCCACCTTCCAC	0.572													9	109					0	0	0.058154	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936092	178936092	+	Missense_Mutation	SNP	A	G	G	rs121913274		TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr3:178936092A>G	uc003fjk.2	+	10	1791	c.1634A>G	c.(1633-1635)GAG>GGG	p.E545G		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	545	PI3K helical.		E -> G (in KERSEB).|E -> A (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E545K(735)|p.E545A(75)|p.E545G(55)|p.E545?(19)|p.E545D(15)|p.E545Q(12)|p.E545V(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GAAATCACTGAGCAGGAGAAA	0.353	E545G(KCL22_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|E545A(AGS_STOMACH)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			4	49					0	0	0.009096	0	0
KIAA0922	23240	broad.mit.edu	37	4	154542876	154542876	+	Missense_Mutation	SNP	T	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr4:154542876T>A	uc003inm.3	+	28	3783	c.3731T>A	c.(3730-3732)TTT>TAT	p.F1244Y	KIAA0922_uc010ipp.2_Missense_Mutation_p.F1245Y|KIAA0922_uc010ipq.2_Missense_Mutation_p.F1013Y	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1244	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TGCAGTGACTTTGAGAGGTCT	0.433													8	54					0	0	0.047766	0	0
RALA	5898	broad.mit.edu	37	7	39726381	39726381	+	Splice_Site	SNP	G	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr7:39726381G>T	uc003thd.2	+	2	414	c.114_splice	c.e2+1	p.E38_splice		NM_005402	NP_005393	P11233	RALA_HUMAN	ras related v-ral simian leukemia viral oncogene						actin cytoskeleton reorganization|cell cycle|chemotaxis|cytokinesis|exocytosis|interspecies interaction between organisms|membrane raft localization|nerve growth factor receptor signaling pathway|positive regulation of filopodium assembly|Ras protein signal transduction|regulation of exocytosis	cell surface|cleavage furrow|cytosol|midbody|plasma membrane	Edg-2 lysophosphatidic acid receptor binding|GTP binding|GTPase activity			lung(1)|skin(1)	2						GTACGATGAGGTAAGTGCTAA	0.418													4	45					0.00024832	0.000285108	0.009096	1	0
GIMAP5	55340	broad.mit.edu	37	7	150439641	150439641	+	Silent	SNP	T	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr7:150439641T>C	uc003whr.1	+	3	766	c.414T>C	c.(412-414)TTT>TTC	p.F138F	GIMAP5_uc010lpu.2_5'UTR	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	138	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGAGGTCTTTGGGACAGGGG	0.582													15	114					0	0	0.033300	0	0
PIWIL2	55124	broad.mit.edu	37	8	22146091	22146091	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr8:22146091G>A	uc003xbn.2	+	8	1046	c.898G>A	c.(898-900)GCT>ACT	p.A300T	PIWIL2_uc011kzf.1_Missense_Mutation_p.A300T|PIWIL2_uc010ltv.2_Missense_Mutation_p.A300T	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	300					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AACAGACAGTGCTGAAATCAG	0.383													4	69					0	0	0.014758	0	0
KCNU1	157855	broad.mit.edu	37	8	36642081	36642081	+	Silent	SNP	T	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr8:36642081T>C	uc010lvw.2	+	1	240	c.153T>C	c.(151-153)TCT>TCC	p.S51S	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	51	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		TCTGGAGATCTGTTAAAAAAT	0.438													4	33					0	0	0.009096	0	0
PXDNL	137902	broad.mit.edu	37	8	52321594	52321594	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr8:52321594G>A	uc003xqu.3	-	17	2691	c.2590C>T	c.(2590-2592)CGC>TGC	p.R864C	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	864					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGGCTGGAGCGCGCGAAGAGC	0.662													3	51					0	0	0.004672	0	0
CHD7	55636	broad.mit.edu	37	8	61735226	61735226	+	Missense_Mutation	SNP	T	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr8:61735226T>G	uc003xue.2	+	12	3599	c.3122T>G	c.(3121-3123)TTG>TGG	p.L1041W	CHD7_uc003xuf.2_Missense_Mutation_p.L154W	NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1041	Helicase ATP-binding.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TGGACAGAGTTGAACGTGGTT	0.433													6	201					0	0	0.021553	0	0
ASAP1	50807	broad.mit.edu	37	8	131370312	131370312	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr8:131370312A>C	uc003yta.1	-	2	165	c.137T>G	c.(136-138)TTC>TGC	p.F46C	ASAP1_uc011liw.1_Missense_Mutation_p.F39C	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	46					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						CCGCGTGGTGAAGCTGGACGT	0.677													7	27					0	0	0.047766	0	0
NOL6	65083	broad.mit.edu	37	9	33467861	33467861	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr9:33467861C>T	uc003zsz.2	-	12	1531	c.1430G>A	c.(1429-1431)CGT>CAT	p.R477H	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Missense_Mutation_p.R477H|NOL6_uc010mjv.2_Missense_Mutation_p.R474H|NOL6_uc011lob.1_Missense_Mutation_p.R425H|NOL6_uc003ztb.1_Missense_Mutation_p.R477H	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	477					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		ACTCAGTGGACGGAGACTGGA	0.602													4	47					0	0	0.021553	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627757	43627757	+	Silent	SNP	A	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr9:43627757A>G	uc011lrb.1	-	4	959	c.930T>C	c.(928-930)TGT>TGC	p.C310C		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	310						integral to membrane					0						CTTCCATCTGACAGGTCTCTG	0.532													56	264					0	0	0.048971	0	0
CORO2A	7464	broad.mit.edu	37	9	100897226	100897226	+	Missense_Mutation	SNP	C	A	A			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr9:100897226C>A	uc004ayl.2	-	4	596	c.330G>T	c.(328-330)TGG>TGT	p.W110C	CORO2A_uc004aym.2_Missense_Mutation_p.W110C	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	110	WD 1.				actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				TGGGGATGCTCCAGATCTTAA	0.632													22	52					7.88262e-20	9.77445e-20	0.083992	1	0
TAF1	6872	broad.mit.edu	37	X	70626502	70626502	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chrX:70626502G>T	uc004dzu.3	+	26	4061	c.4010G>T	c.(4009-4011)CGC>CTC	p.R1337L	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.R1358L|TAF1_uc004dzv.3_Missense_Mutation_p.R511L|TAF1_uc010nld.1_RNA|TAF1_uc010nle.1_RNA|TAF1_uc010nlf.1_5'UTR|TAF1_uc004dzx.2_RNA|TAF1_uc004dzy.2_RNA	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	1337					G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				GATGAGGTTCGCAGAAAATCT	0.398													6	37					5.18039e-06	6.06008e-06	0.038147	1	0
FMR1NB	158521	broad.mit.edu	37	X	147106438	147106438	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chrX:147106438A>G	uc004fcm.2	+	5	760	c.686A>G	c.(685-687)AAG>AGG	p.K229R		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	229	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ACGGGTTTGAAGAAACAAAGA	0.413													3	45					0	0	0.004672	0	0
TBC1D28	254272	broad.mit.edu	37	17	18539791	18539791	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:18539791delC	uc002gud.2	-	10	1029	c.617delG	c.(616-618)GGTfs	p.G206fs		NM_001039397	NP_001034486	Q2M2D7	TBC28_HUMAN	TBC1 domain family, member 28	206	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)	1						AGTTGCAACACCCCCGAGAGA	0.532													10	176	---	---	---	---					
SUPT6H	6830	broad.mit.edu	37	17	27001303	27001305	+	In_Frame_Del	DEL	GAG	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr17:27001303_27001305delGAG	uc002hby.2	+	3	202_204	c.112_114delGAG	c.(112-114)GAGdel	p.E43del	SUPT6H_uc010crt.2_In_Frame_Del_p.E43del	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	43	Asp/Glu-rich.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					TCTTCCAGATGAGGAGGAGGAGG	0.453													10	72	---	---	---	---					
NFIX	4784	broad.mit.edu	37	19	13192587	13192589	+	In_Frame_Del	DEL	ACC	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr19:13192587_13192589delACC	uc010xmx.1	+	8	1249_1251	c.1196_1198delACC	c.(1195-1200)TACCAC>TAC	p.H403del	NFIX_uc002mwd.2_In_Frame_Del_p.H395del|NFIX_uc002mwe.2_In_Frame_Del_p.H387del|NFIX_uc002mwf.2_In_Frame_Del_p.H357del|NFIX_uc002mwg.1_In_Frame_Del_p.H394del			Q14938	NFIX_HUMAN	RecName: Full=Nuclear factor 1;	395					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(19;8.2e-22)			ACCATCCGCTACCACCACCACCA	0.645											OREG0025286	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	119	---	---	---	---					
MARCH4	57574	broad.mit.edu	37	2	217234779	217234779	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr2:217234779delG	uc002vgb.2	-	1	1972	c.205delC	c.(205-207)CAGfs	p.Q69fs		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	69	Pro-rich.					Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		CCGGGGGGCTGGGGGTCGCCG	0.701													2	4	---	---	---	---					
HHATL	57467	broad.mit.edu	37	3	42739670	42739672	+	In_Frame_Del	DEL	GAA	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr3:42739670_42739672delGAA	uc003clw.2	-	7	802_804	c.655_657delTTC	c.(655-657)TTCdel	p.F219del	HHATL_uc003clx.2_In_Frame_Del_p.F219del	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	219					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		TGATGGGCCCGAAGAAGAAGAAG	0.552													7	176	---	---	---	---					
PBRM1	55193	broad.mit.edu	37	3	52598217	52598217	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr3:52598217delG	uc003des.2	-	23	3736	c.3724delC	c.(3724-3726)CTCfs	p.L1242fs	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Frame_Shift_Del_p.L1242fs|PBRM1_uc003der.2_Frame_Shift_Del_p.L1210fs|PBRM1_uc003det.2_Frame_Shift_Del_p.L1257fs|PBRM1_uc003deu.2_Frame_Shift_Del_p.L1257fs|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Frame_Shift_Del_p.L1242fs|PBRM1_uc010hmk.1_Frame_Shift_Del_p.L1217fs|PBRM1_uc003dey.2_Frame_Shift_Del_p.L1217fs|PBRM1_uc003dez.1_Frame_Shift_Del_p.L1241fs	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1242	BAH 2.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		CTGCAGGAGAGGAAGTCCTTG	0.383			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								7	98	---	---	---	---					
ZBTB20	26137	broad.mit.edu	37	3	114069165	114069166	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr3:114069165_114069166delAA	uc003ebi.2	-	4	1939_1940	c.1759_1760delTT	c.(1759-1761)TTCfs	p.F587fs	ZBTB20_uc003ebj.2_Frame_Shift_Del_p.F514fs|ZBTB20_uc010hqp.2_Frame_Shift_Del_p.F514fs|ZBTB20_uc003ebk.2_Frame_Shift_Del_p.F514fs|ZBTB20_uc003ebl.2_Frame_Shift_Del_p.F514fs|ZBTB20_uc003ebm.2_Frame_Shift_Del_p.F514fs|ZBTB20_uc003ebn.2_Frame_Shift_Del_p.F514fs|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	587	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		TTTGGCGGTGAAAGTCTTGTTG	0.599													16	261	---	---	---	---					
FIP1L1	81608	broad.mit.edu	37	4	54324903	54324904	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr4:54324903_54324904delAT	uc003gzy.2	+	17	1769_1770	c.1583_1584delAT	c.(1582-1584)CATfs	p.H528fs	PDGFRA_uc003haa.2_Intron|FIP1L1_uc011bzu.1_Frame_Shift_Del_p.H522fs|FIP1L1_uc003gzz.2_Frame_Shift_Del_p.H454fs|FIP1L1_uc003hab.2_Frame_Shift_Del_p.H493fs|FIP1L1_uc003hac.2_Frame_Shift_Del_p.H282fs|FIP1L1_uc010ign.2_RNA|FIP1L1_uc003had.2_Frame_Shift_Del_p.I113fs|FIP1L1_uc003hae.2_Frame_Shift_Del_p.I116fs	NM_030917	NP_112179	Q6UN15	FIP1_HUMAN	FIP1 like 1 isoform 1	528	Arg-rich.|Sufficient for interaction with CPSF1 and CSTF3.|Glu-rich.				mRNA processing	nucleus	RNA binding			ovary(1)|skin(1)	2			GBM - Glioblastoma multiforme(3;3.31e-36)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GAAGAACGACATAGAGAAAGAC	0.381			T	PDGFRA	idiopathic hypereosinophilic syndrome								11	41	---	---	---	---					
AGPAT9	84803	broad.mit.edu	37	4	84509367	84509367	+	Frame_Shift_Del	DEL	A	-	-	rs140308062	byFrequency	TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr4:84509367delA	uc003how.2	+	6	777	c.559delA	c.(559-561)AAAfs	p.K187fs	AGPAT9_uc003hox.2_Frame_Shift_Del_p.K187fs|AGPAT9_uc003hoy.2_Frame_Shift_Del_p.K187fs	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	187					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				CTTCAGCCTCAAAAACTGGCT	0.413													7	155	---	---	---	---					
C6orf165	154313	broad.mit.edu	37	6	88144700	88144700	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr6:88144700delA	uc003plv.2	+	11	1515	c.1423delA	c.(1423-1425)AAAfs	p.K475fs	SLC35A1_uc003plx.2_5'Flank|C6orf165_uc003plw.2_Frame_Shift_Del_p.K287fs|C6orf165_uc010kbv.1_RNA|C6orf165_uc003plu.1_Frame_Shift_Del_p.K475fs	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	475										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGAAAAGGCCAAAAAAAATAC	0.269													9	115	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68412832	68412832	+	RNA	DEL	C	-	-			TCGA-HT-7605-01A-11D-2086-08	TCGA-HT-7605-10A-01D-2086-08									Somatic	Phase_I	Capture				Illumina GAIIx	19d69d6e-e741-4df9-ba72-c14e5111f81f	b42925b4-0c56-428a-aca8-cbefe4d9dcaf	g.chr9:68412832delC	uc004aew.1	+	2		c.994delC			uc004aex.2_5'Flank					Homo sapiens cDNA, FLJ98602.																		ctctttctctcccttccgggg	0.174													2	4	---	---	---	---					
