Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ALG6	29929	broad.mit.edu	37	1	63876858	63876858	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr1:63876858T>C	uc010oow.1	+	8	841	c.536T>C	c.(535-537)CTT>CCT	p.L179P	ALG6_uc001daz.2_RNA|ALG6_uc009waj.2_RNA|ALG6_uc010oox.1_5'UTR	NM_013339	NP_037471	Q9Y672	ALG6_HUMAN	dolichyl pyrophosphate Man9GlcNAc2	179	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity				0						TGGGGTGTTCTTGGAATATCT	0.363000													40	109					0	0	0.139131	0	0
SERPING1	710	broad.mit.edu	37	11	57367766	57367766	+	Missense_Mutation	SNP	G	A	A	rs139035354	by1000genomes	TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr11:57367766G>A	uc001nkp.1	+	3	657	c.466G>A	c.(466-468)GCC>ACC	p.A156T	SERPING1_uc001nkq.1_Missense_Mutation_p.A156T|SERPING1_uc010rju.1_Missense_Mutation_p.A104T|SERPING1_uc010rjv.1_Missense_Mutation_p.A161T|SERPING1_uc001nkr.1_Missense_Mutation_p.A156T|SERPING1_uc009ymi.1_Missense_Mutation_p.A156T|SERPING1_uc009ymj.1_Missense_Mutation_p.A156T|SERPING1_uc001nks.1_Intron	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	156					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						GCTCTACCACGCCTTCTCAGC	0.542000									Hereditary_Angioedema				49	62					0	0	0.139131	0	0
MS4A14	84689	broad.mit.edu	37	11	60183353	60183353	+	Silent	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr11:60183353T>C	uc001npj.2	+	5	1477	c.912T>C	c.(910-912)TTT>TTC	p.F304F	MS4A14_uc001npi.2_Silent_p.F192F|MS4A14_uc001npn.2_Silent_p.F42F|MS4A14_uc001npk.2_Silent_p.F287F|MS4A14_uc001npl.2_Silent_p.F42F|MS4A14_uc001npm.2_Silent_p.F42F	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	304						integral to membrane	receptor activity			breast(1)	1						TCCAAGTTTTTCCATCCCATT	0.423000													23	26					0	0	0.099896	0	0
CHORDC1	26973	broad.mit.edu	37	11	89947220	89947220	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr11:89947220C>T	uc001pdg.2	-	4	705	c.295G>A	c.(295-297)GCC>ACC	p.A99T	CHORDC1_uc009yvz.2_Missense_Mutation_p.A80T	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing	99	Interaction with HSP90AA1 and HSP90AB1 (By similarity).				chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				GGCTTAGGGGCTTGAATGATG	0.393000													5	104					0	0	0.014758	0	0
TMTC1	83857	broad.mit.edu	37	12	29659825	29659825	+	Missense_Mutation	SNP	C	T	T	rs35279918		TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr12:29659825C>T	uc001rjb.2	-	18	2753	c.2279G>A	c.(2278-2280)CGC>CAC	p.R760H	TMTC1_uc001riz.2_Missense_Mutation_p.R517H|TMTC1_uc001rja.2_Missense_Mutation_p.R604H|TMTC1_uc001riy.2_Missense_Mutation_p.R213H	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	868						integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					TTTTTCTAGGCGATCCAATTT	0.453000													25	59					0	0	0.144211	0	0
DCLK1	9201	broad.mit.edu	37	13	36686247	36686247	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr13:36686247C>T	uc001uvf.2	-	3	715	c.482G>A	c.(481-483)CGG>CAG	p.R161Q		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	161					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		AGACACTGCCCGAGAAGCCGA	0.522000													13	36					0	0	0.105934	0	0
DIS3	22894	broad.mit.edu	37	13	73346337	73346337	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr13:73346337T>C	uc001vix.3	-	10	1837	c.1463A>G	c.(1462-1464)GAT>GGT	p.D488G	DIS3_uc001viy.3_Missense_Mutation_p.D458G|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	488					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		ATGTAGAGCATCGTCTATATC	0.363000										Multiple Myeloma(4;0.011)			15	23					0	0	0.146539	0	0
MYCBP2	23077	broad.mit.edu	37	13	77807397	77807397	+	Silent	SNP	G	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr13:77807397G>C	uc001vkf.2	-	19	2608	c.2517C>G	c.(2515-2517)GGC>GGG	p.G839G	MYCBP2_uc010aev.2_Silent_p.G243G	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	839					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		ATACAAGGGGGCCTGAGGAGA	0.363000													3	31					0	0	0.115264	0	0
FOXG1	2290	broad.mit.edu	37	14	29237034	29237034	+	Silent	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr14:29237034G>A	uc001wqe.2	+	1	748	c.549G>A	c.(547-549)CCG>CCA	p.P183P		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	183	Fork-head.			P -> PP (in Ref. 1; CAA52241).	axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		AGAAGCCGCCGTTCAGCTACA	0.348000													8	16					0	0	0.080935	0	0
SYNE2	23224	broad.mit.edu	37	14	64676802	64676802	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr14:64676802A>G	uc001xgm.2	+	103	18913	c.18683A>G	c.(18682-18684)AAC>AGC	p.N6228S	SYNE2_uc001xgl.2_Missense_Mutation_p.N6228S|SYNE2_uc010apy.2_Missense_Mutation_p.N2613S|SYNE2_uc001xgn.2_Missense_Mutation_p.N1190S|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.N198S|SYNE2_uc001xgq.2_Missense_Mutation_p.N593S|SYNE2_uc001xgr.2_Missense_Mutation_p.N11S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6228	Spectrin 7.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CGCTGGGACAACCTTCAGAGG	0.622000													7	15					0	0	0.058154	0	0
ISM2	145501	broad.mit.edu	37	14	77942239	77942239	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr14:77942239G>A	uc001xtz.2	-	7	1489	c.1415C>T	c.(1414-1416)GCG>GTG	p.A472V	ISM2_uc001xua.2_3'UTR|ISM2_uc001xty.2_Missense_Mutation_p.A384V|ISM2_uc010tvl.1_Missense_Mutation_p.A391V	NM_199296	NP_954993	Q6H9L7	ISM2_HUMAN	isthmin 2 homolog isoform 1	472	AMOP.					extracellular region				skin(1)	1						GCAGAAGCGCGCCGTGGGCTG	0.677000													7	22					0	0	0.038147	0	0
LOC645752	645752	broad.mit.edu	37	15	78207569	78207569	+	Missense_Mutation	SNP	G	A	A	rs56314252	by1000genomes	TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr15:78207569G>A	uc010bky.2	-	18	2107	c.1343C>T	c.(1342-1344)GCA>GTA	p.A448V	LOC645752_uc010umq.1_Missense_Mutation_p.A95V|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						GATCTGCTGTGCAGTGGGGTT	0.572000													3	20					0	0	0.115264	0	0
AKAP13	11214	broad.mit.edu	37	15	86287025	86287025	+	Silent	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr15:86287025G>A	uc002blv.1	+	36	8531	c.8361G>A	c.(8359-8361)AAG>AAA	p.K2787K	AKAP13_uc002blu.1_Silent_p.K2791K|AKAP13_uc002blw.1_Silent_p.K1252K|AKAP13_uc002blx.1_Silent_p.K1032K	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2787	Interaction with ESR1.|Poly-Lys.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						AGAAAAAAAAGAAGAACAAAA	0.532000													5	27					0	0	0.021553	0	0
IQGAP1	8826	broad.mit.edu	37	15	91034589	91034589	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr15:91034589C>T	uc002bpl.1	+	34	4374	c.4273C>T	c.(4273-4275)CAG>TAG	p.Q1425*	IQGAP1_uc010uqg.1_Nonsense_Mutation_p.Q46*	NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	1425	C2.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GAGAGCCATGCAGAGACGTGC	0.398000													4	23					0	0	0.014758	0	0
EFTUD2	9343	broad.mit.edu	37	17	42931994	42931994	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr17:42931994C>T	uc002ihn.2	-	22	2450	c.2189G>A	c.(2188-2190)CGT>CAT	p.R730H	EFTUD2_uc010wje.1_Missense_Mutation_p.R695H|EFTUD2_uc010wjf.1_Missense_Mutation_p.R720H	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	730						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				CCAGATGGAACGGGCAGCCAG	0.567000													17	29					0	0	0.049695	0	0
TTYH2	94015	broad.mit.edu	37	17	72249349	72249349	+	Silent	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr17:72249349G>A	uc002jkc.2	+	12	1420	c.1389G>A	c.(1387-1389)CAG>CAA	p.Q463Q	TTYH2_uc010wqw.1_Silent_p.Q442Q|TTYH2_uc002jkd.2_Silent_p.Q142Q	NM_032646	NP_116035	Q9BSA4	TTYH2_HUMAN	tweety 2 isoform 1	463	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity|protein binding			ovary(3)|large_intestine(1)	4						TGGGAAGTCAGACCAGCCTGC	0.647000													15	54					0	0	0.055883	0	0
EVPL	2125	broad.mit.edu	37	17	74003681	74003681	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr17:74003681C>T	uc002jqi.2	-	22	5833	c.5605G>A	c.(5605-5607)GTG>ATG	p.V1869M	EVPL_uc010wss.1_Missense_Mutation_p.V1891M|EVPL_uc010wst.1_Missense_Mutation_p.V1339M	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1869	Globular 2.|Plectin 4.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						AGCAGGTCCACGATGCCCCCT	0.617000													4	45					0	0	0.021553	0	0
C3	718	broad.mit.edu	37	19	6712560	6712560	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr19:6712560T>C	uc002mfm.2	-	10	1140	c.1078A>G	c.(1078-1080)ACA>GCA	p.T360A		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	360					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		TACTTGGGTGTCTTGGTGAAG	0.622000													13	171					0	0	0.119110	0	0
ZNF844	284391	broad.mit.edu	37	19	12187475	12187475	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr19:12187475C>G	uc002mtb.2	+	4	1683	c.1540C>G	c.(1540-1542)CAT>GAT	p.H514D	ZNF844_uc010dym.1_Missense_Mutation_p.H357D	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	514					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCCTTCACATCTGCCTCA	0.408000													4	27					0	0	0.014758	0	0
LYPD4	147719	broad.mit.edu	37	19	42341280	42341280	+	Silent	SNP	T	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr19:42341280T>G	uc002orp.1	-	5	1662	c.678A>C	c.(676-678)GCA>GCC	p.A226A	LYPD4_uc002orq.1_Silent_p.A191A	NM_173506	NP_775777	Q6UWN0	LYPD4_HUMAN	LY6/PLAUR domain containing 4 precursor	226						anchored to membrane|plasma membrane				ovary(1)	1						GCCTGGAGGATGCTGCACCAA	0.493000													3	60					0	0	0.115264	0	0
SEC1	653677	broad.mit.edu	37	19	49183610	49183610	+	Silent	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr19:49183610G>A	uc010xzv.1	+	5	757	c.630G>A	c.(628-630)CTG>CTA	p.L210L	SEC1_uc002pka.2_Silent_p.L170L|SEC1_uc010xzw.1_Silent_p.L127L|SEC1_uc010ema.2_Silent_p.L116L	NR_004401				SubName: Full=cDNA FLJ58287, highly similar to Galactoside 2-alpha-L-fucosyltransferase 2 (EC 2.4.1.69);												0						TGCCGGTGCTGCACAGCGCCA	0.667000													15	18					0	0	0.049695	0	0
C2orf16	84226	broad.mit.edu	37	2	27799838	27799838	+	Silent	SNP	A	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr2:27799838A>T	uc002rkz.3	+	1	450	c.399A>T	c.(397-399)GCA>GCT	p.A133A		NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	133										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					CAAAATATGCAGAGATGATCC	0.383000													4	74					0	0	0.009096	0	0
LRP2	4036	broad.mit.edu	37	2	170038748	170038748	+	Silent	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr2:170038748C>T	uc002ues.2	-	51	10140	c.9927G>A	c.(9925-9927)CAG>CAA	p.Q3309Q		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3309	LDL-receptor class B 31.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CCACACAGTGCTGGGCCAGCA	0.532000													31	69					0	0	0.054565	0	0
ANKAR	150709	broad.mit.edu	37	2	190585366	190585366	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr2:190585366A>C	uc002uqw.1	+	11	2275	c.2275A>C	c.(2275-2277)AAT>CAT	p.N759H	ANKAR_uc002uqu.2_Intron|ANKAR_uc002uqx.1_RNA	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	830	ARM 3.					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			AAGCCTGATAAATCTATTGAA	0.254000													16	44					0	0	0.043863	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								28	34					0	0	0.064281	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060961	35060961	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr20:35060961G>T	uc002xff.2	+	3	1276	c.841G>T	c.(841-843)GGG>TGG	p.G281W	DLGAP4_uc010zvp.1_Missense_Mutation_p.G281W	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	281					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CCCCAGCCTTGGGGTGGGCAC	0.632000													11	7					0.00010058	0.000102675	0.093190	1	0
SETD2	29072	broad.mit.edu	37	3	47103767	47103767	+	Nonsense_Mutation	SNP	G	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr3:47103767G>C	uc003cqs.2	-	14	6232	c.6179C>G	c.(6178-6180)TCA>TGA	p.S2060*	SETD2_uc003cqv.2_Nonsense_Mutation_p.S2127*|SETD2_uc003cqt.1_RNA	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	2060					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TCTCTCTCTTGACCTATTAGG	0.463000			N|F|S|Mis		clear cell renal carcinoma								6	128					0	0	0.047766	0	0
CCDC54	84692	broad.mit.edu	37	3	107097101	107097101	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr3:107097101C>T	uc003dwi.1	+	1	914	c.667C>T	c.(667-669)CGT>TGT	p.R223C		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	223											0						TCTGAAGAAACGTAACCATCA	0.378000													27	36					0	0	0.108266	0	0
SLC9A10	285335	broad.mit.edu	37	3	111887770	111887770	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr3:111887770C>T	uc003dyu.2	-	25	3413	c.3191G>A	c.(3190-3192)CGA>CAA	p.R1064Q	SLC9A10_uc011bhu.1_Missense_Mutation_p.R327Q|SLC9A10_uc010hqc.2_Missense_Mutation_p.R1016Q	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	1064					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATAAGTTTTTCGTAACAGACA	0.323000													19	48					0	0	0.062417	0	0
TRPC7	57113	broad.mit.edu	37	5	135561020	135561020	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr5:135561020A>G	uc003lbn.1	-	9	2285	c.2282T>C	c.(2281-2283)ATG>ACG	p.M761T	TRPC7_uc010jef.1_Missense_Mutation_p.M698T|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.M692T|TRPC7_uc010jei.1_Missense_Mutation_p.M637T|TRPC7_uc010jej.1_Missense_Mutation_p.M313T	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	762	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGAATTCCTCATGCCAGCCTG	0.453000													6	12					0	0	0.047766	0	0
LY6G6F	259215	broad.mit.edu	37	6	31685399	31685399	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr6:31685399G>A	uc003nwb.1	+	6	967	c.967G>A	c.(967-969)GCC>ACC	p.A323T	LY6G6D_uc003nwf.1_Missense_Mutation_p.A74T|LY6G6D_uc003nwg.1_Missense_Mutation_p.A53T	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	Error:Variant_position_missing_in_Q5SQ64_after_alignment						integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						CTGCGTCGCAGCCCATCATTG	0.577000													74	141					0	0	0.139131	0	0
EEF1A1	1915	broad.mit.edu	37	6	74229668	74229668	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr6:74229668T>C	uc003phi.2	-	1	119	c.82A>G	c.(82-84)ATC>GTC	p.I28V	EEF1A1_uc003phd.2_5'Flank|EEF1A1_uc003phe.2_Missense_Mutation_p.I28V|EEF1A1_uc003phf.2_Missense_Mutation_p.I28V|EEF1A1_uc003phg.2_Missense_Mutation_p.I28V|EEF1A1_uc003phh.2_5'UTR|EEF1A1_uc003phj.2_Missense_Mutation_p.I28V|EEF1A1_uc003phk.2_Missense_Mutation_p.I28V|EEF1A1_uc003phl.2_Missense_Mutation_p.I28V|EEF1A1_uc003phm.1_RNA	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	28						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						CATTTATAGATCAGATGGCCA	0.413000													13	36					0	0	0.146539	0	0
NSUN5P1	155400	broad.mit.edu	37	7	75045031	75045031	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr7:75045031C>T	uc003udh.1	+	1	162	c.119C>T	c.(118-120)CCT>CTT	p.P40L	NSUN5P1_uc003ude.1_5'UTR|NSUN5P1_uc003udf.1_5'UTR|NSUN5P1_uc003udg.1_5'UTR	NM_145645	NP_663620			NOL1/NOP2/Sun domain family, member 5B												0						CTGCTGGATCCTTCCTGCAGT	0.507000													5	19					0	0	0.021553	0	0
CD36	948	broad.mit.edu	37	7	80286000	80286000	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr7:80286000G>A	uc003uhc.2	+	7	949	c.265G>A	c.(265-267)GGT>AGT	p.G89S	CD36_uc003uhd.3_Missense_Mutation_p.G89S|CD36_uc011kgv.1_Missense_Mutation_p.G13S|CD36_uc003uhe.3_Missense_Mutation_p.G89S|CD36_uc003uhf.3_Missense_Mutation_p.G89S|CD36_uc003uhg.3_Missense_Mutation_p.G89S|CD36_uc003uhh.3_Missense_Mutation_p.G89S	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	89	Extracellular (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						TAAGCAAAGAGGTCCTTATAC	0.398000													3	70					0	0	0.014758	0	0
SSPO	23145	broad.mit.edu	37	7	149482723	149482723	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr7:149482723C>G	uc010lpk.2	+	22	3139	c.3139C>G	c.(3139-3141)CTA>GTA	p.L1047V	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1047	VWFD 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCCAGTGGCCTATTCACAGT	0.627000													4	7					0	0	0.021553	0	0
KIF13B	23303	broad.mit.edu	37	8	29039519	29039519	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr8:29039519G>A	uc003xhh.3	-	7	561	c.502C>T	c.(502-504)CGT>TGT	p.R168C	KIF13B_uc003xhj.2_Missense_Mutation_p.R65C|KIF13B_uc010lvf.1_Missense_Mutation_p.R104C	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	168	Kinesin-motor.				microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		AACGTCTGACGGCTTCTGTTC	0.373000													3	39					0	0	0.009096	0	0
NOL8	55035	broad.mit.edu	37	9	95077012	95077012	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr9:95077012T>C	uc004arv.2	-	7	2232	c.1895A>G	c.(1894-1896)CAT>CGT	p.H632R	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Intron|NOL8_uc011ltw.1_Missense_Mutation_p.H564R	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	632					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						CTTCTTTGCATGTTGGCATGG	0.453000													5	10					0	0	0.029380	0	0
TBC1D2	55357	broad.mit.edu	37	9	100991314	100991314	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr9:100991314G>A	uc011lvb.1	-	5	1078	c.898C>T	c.(898-900)CGG>TGG	p.R300W	TBC1D2_uc004ayq.2_Missense_Mutation_p.R300W|TBC1D2_uc004ayr.2_Missense_Mutation_p.R82W|TBC1D2_uc004ayo.3_Missense_Mutation_p.R300W	NM_018421	NP_060891	Q9BYX2	TBD2A_HUMAN	TBC1 domain family, member 2	300	Potential.|Interaction with RAC1.					cell junction|cytoplasmic membrane-bounded vesicle|nucleus	Rab GTPase activator activity			ovary(3)	3		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.55e-37)		GTTCGGTTCCGTGTGATTCCT	0.522000													11	34					0	0	0.093190	0	0
OR13D1	286365	broad.mit.edu	37	9	107456818	107456818	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr9:107456818C>G	uc011lvs.1	+	1	116	c.116C>G	c.(115-117)TCT>TGT	p.S39C		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	39	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AGAAATTACTCTGCCATGACT	0.423000													7	24					0	0	0.029380	0	0
MUSK	4593	broad.mit.edu	37	9	113562782	113562782	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr9:113562782G>C	uc004bey.2	+	14	2222	c.2124G>C	c.(2122-2124)CAG>CAC	p.Q708H	MUSK_uc004bez.1_Missense_Mutation_p.Q288H	NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	708	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						TTGCCAGGCAGGTGGCAGCTG	0.567000													28	94					0	0	0.045705	0	0
PTGS1	5742	broad.mit.edu	37	9	125154668	125154668	+	Missense_Mutation	SNP	T	G	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr9:125154668T>G	uc004bmg.1	+	11	1780	c.1645T>G	c.(1645-1647)TTT>GTT	p.F549V	PTGS1_uc011lys.1_Missense_Mutation_p.F487V|PTGS1_uc010mwb.1_Missense_Mutation_p.F403V|PTGS1_uc004bmf.1_Missense_Mutation_p.F512V|PTGS1_uc004bmh.1_Missense_Mutation_p.F440V|PTGS1_uc011lyt.1_Missense_Mutation_p.F440V	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	549					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GCCGAGCACATTTGGCGGCGA	0.537000													20	53					0	0	0.091800	0	0
HCCS	3052	broad.mit.edu	37	X	11135492	11135492	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chrX:11135492T>C	uc004cuk.2	+	4	624	c.358T>C	c.(358-360)TAC>CAC	p.Y120H	HCCS_uc004cuj.2_Missense_Mutation_p.Y120H|HCCS_uc004cul.1_Missense_Mutation_p.Y120H	NM_005333	NP_005324	P53701	CCHL_HUMAN	holocytochrome c synthase	120					organ morphogenesis|oxidation-reduction process	mitochondrial inner membrane	holocytochrome-c synthase activity|metal ion binding				0						AAAGTGGGTTTACCCTTCTGA	0.383000													37	21					0	0	0.111260	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160442	9160442	+	RNA	SNP	A	C	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chrY:9160442A>C	uc004frl.1	-	1		c.42T>G				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						TTGAGGCCACAAATGAAAAGC	0.313000													3	53					0	0	0.115264	0	0
KLHL28	54813	broad.mit.edu	37	14	45415078	45415078	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr14:45415078delA	uc001wvq.2	-	2	300	c.54delT	c.(52-54)TCTfs	p.S18fs	KLHL28_uc001wvr.2_Frame_Shift_Del_p.S18fs|KLHL28_uc001wvt.3_Frame_Shift_Del_p.S18fs	NM_017658	NP_060128	Q9NXS3	KLH28_HUMAN	BTB (POZ) domain containing 5	18										ovary(1)	1						GAAGTTGTTCAGAATGCAAGT	0.403													21	60	---	---	---	---					
USP32	84669	broad.mit.edu	37	17	58378974	58378975	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chr17:58378974_58378975delTC	uc002iyo.1	-	3	563_564	c.277_278delGA	c.(277-279)GAAfs	p.E93fs	USP32_uc010wov.1_Frame_Shift_Del_p.E93fs	NM_032582	NP_115971	Q8NFA0	UBP32_HUMAN	ubiquitin specific protease 32	93	EF-hand 1.				protein deubiquitination|ubiquitin-dependent protein catabolic process	Golgi apparatus|membrane	calcium ion binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|breast(2)|large_intestine(1)	5	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;2.02e-11)|all cancers(12;5.23e-10)|Colorectal(3;0.198)			TGCTTTCTCTTCATCTTTGCCT	0.302													8	22	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			2	4	---	---	---	---					
