Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
HIVEP3	59269	broad.mit.edu	37	1	42050151	42050151	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr1:42050151C>T	uc001cgz.3	-	4	1531	c.318G>A	c.(316-318)TCG>TCA	p.S106S	HIVEP3_uc001cha.3_Silent_p.S106S|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	106					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GTTTGCCAGGCGACATGAATG	0.617000													98	42					0	0	0.870114	0	0
TNN	63923	broad.mit.edu	37	1	175116175	175116175	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr1:175116175C>T	uc001gkl.1	+	19	3981	c.3868C>T	c.(3868-3870)CGG>TGG	p.R1290W		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1290					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CAGAAAGAAGCGGACGCTGAG	0.592000											OREG0013992	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	24					0	0	0.500413	0	0
CACNA1S	779	broad.mit.edu	37	1	201042735	201042735	+	Missense_Mutation	SNP	G	A	A	rs147112322		TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr1:201042735G>A	uc001gvv.2	-	15	2326	c.2099C>T	c.(2098-2100)ACG>ATG	p.T700M		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	700	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CTTGGCCATCGTTGACTTCTC	0.542000													52	515					0	0	0.870114	0	0
OBSCN	84033	broad.mit.edu	37	1	228432192	228432192	+	Missense_Mutation	SNP	C	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr1:228432192C>A	uc009xez.1	+	11	3445	c.3401C>A	c.(3400-3402)CCA>CAA	p.P1134Q	OBSCN_uc001hsn.2_Missense_Mutation_p.P1134Q	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1134	Ig-like 11.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CTGGTGCTGCCACAGGCGGGC	0.587000													8	80					1.08611e-07	1.15233e-07	0.387290	1	0
ZNF238	10472	broad.mit.edu	37	1	244218515	244218515	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr1:244218515G>A	uc001iae.2	+	1	1934	c.1412G>A	c.(1411-1413)TGC>TAC	p.C471Y	ZNF238_uc001iad.3_Missense_Mutation_p.C480Y|ZNF238_uc001iaf.1_3'UTR	NM_006352	NP_006343	Q99592	ZN238_HUMAN	zinc finger protein 238 isoform 2	471	C2H2-type 4.				negative regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|pancreas(2)	5	all_cancers(71;6.42e-05)|all_epithelial(71;7e-05)|Breast(184;0.0333)|Ovarian(71;0.0619)|all_lung(81;0.089)|all_neural(11;0.101)|Lung NSC(105;0.123)		all cancers(7;1.35e-08)|GBM - Glioblastoma multiforme(7;1e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00223)			TGCAAGTGGTGCGAGCGCAGG	0.597000													28	50					0	0	0.693898	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430688	37430688	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr10:37430688C>T	uc001iza.1	+	7	794	c.695C>T	c.(694-696)GCG>GTG	p.A232V		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	288						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GCACCCTTGGCGGAAAGAACA	0.423000													5	68					0	0	0.184627	0	0
GDF10	2662	broad.mit.edu	37	10	48426631	48426631	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr10:48426631T>C	uc001jfb.2	-	3	1832	c.1376A>G	c.(1375-1377)AAT>AGT	p.N459S	GDF10_uc009xnp.2_Missense_Mutation_p.N458S	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	459					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CACATTCCGATTCTCATCCAG	0.582000											OREG0020165	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	203					0	0	0.335167	0	0
ERCC6	2074	broad.mit.edu	37	10	50667030	50667030	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr10:50667030T>C	uc001jhs.3	-	21	4467	c.4313A>G	c.(4312-4314)CAG>CGG	p.Q1438R	ERCC6_uc009xod.2_Missense_Mutation_p.Q598R|ERCC6_uc010qgr.1_Missense_Mutation_p.Q808R|ERCC6_uc001jhr.3_Missense_Mutation_p.Q806R	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	1438					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						AGTGTGGGCCTGGAAAGCGAT	0.517000								Direct_reversal_of_damage|NER					3	118					0	0	0.115264	0	0
VAX1	11023	broad.mit.edu	37	10	118896039	118896039	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr10:118896039C>T	uc009xyx.2	-	2	618	c.373G>A	c.(373-375)GTG>ATG	p.V125M	VAX1_uc001ldb.1_Missense_Mutation_p.V125M	NM_001112704	NP_001106175	Q5SQQ9	VAX1_HUMAN	ventral anterior homeobox 1 isoform a	125	Homeobox.					nucleus	sequence-specific DNA binding			ovary(2)	2				all cancers(201;0.0108)		CGGCCCACCACGTACTGGCAG	0.667000													16	41					0	0	0.500413	0	0
C11orf42	160298	broad.mit.edu	37	11	6231500	6231500	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr11:6231500G>C	uc001mcj.2	+	2	541	c.493G>C	c.(493-495)GTC>CTC	p.V165L		NM_173525	NP_775796	Q8N5U0	CK042_HUMAN	hypothetical protein LOC160298	165										ovary(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.95e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCTACCAGGTCTTCTCTTG	0.587000													11	156					0	0	0.387290	0	0
UEVLD	55293	broad.mit.edu	37	11	18568522	18568522	+	Missense_Mutation	SNP	T	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr11:18568522T>A	uc001mot.2	-	8	871	c.791A>T	c.(790-792)GAT>GTT	p.D264V	UEVLD_uc001mou.2_Missense_Mutation_p.D264V|UEVLD_uc010rde.1_Missense_Mutation_p.D134V|UEVLD_uc010rdf.1_Missense_Mutation_p.D242V|UEVLD_uc010rdg.1_Missense_Mutation_p.D134V|UEVLD_uc001mov.2_Missense_Mutation_p.D242V	NM_001040697	NP_001035787	Q8IX04	UEVLD_HUMAN	ubiquitin-conjugating enzyme E2-like isoform a	264					cellular carbohydrate metabolic process|protein modification process|protein transport		binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor				0						CTGTACCACATCAAGGTACGA	0.458000													10	99					0	0	0.335167	0	0
OR4A16	81327	broad.mit.edu	37	11	55111416	55111416	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr11:55111416T>C	uc010rie.1	+	1	740	c.740T>C	c.(739-741)CTC>CCC	p.L247P		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						GTGGTTGCCCTCGTTTTTGTT	0.398000													16	41					0	0	0.575678	0	0
SLC22A10	387775	broad.mit.edu	37	11	63064875	63064875	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr11:63064875C>T	uc009yor.2	+	3	815	c.607C>T	c.(607-609)CGC>TGC	p.R203C	SLC22A10_uc010rmo.1_RNA|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_Intron	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	203	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						CTGTGTACTACGCTTCTTGGC	0.408000													4	130					0	0	0.150653	0	0
DCN	1634	broad.mit.edu	37	12	91546948	91546948	+	Missense_Mutation	SNP	G	A	A	rs144174426		TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr12:91546948G>A	uc001tbs.2	-	5	765	c.671C>T	c.(670-672)ACG>ATG	p.T224M	DCN_uc001tbo.2_Missense_Mutation_p.T115M|DCN_uc001tbp.2_Missense_Mutation_p.T77M|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.T224M|DCN_uc001tbu.2_Missense_Mutation_p.T224M	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	224	LRR 7.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						ATGTAATTCCGTAAGGGAAGG	0.348000													7	122					0	0	0.335167	0	0
MYO1H	283446	broad.mit.edu	37	12	109835562	109835562	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr12:109835562G>A	uc010sxn.1	+	4	467	c.467G>A	c.(466-468)CGG>CAG	p.R156Q		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						AGAACGCTCCGGAATGACAAC	0.378000													3	40					0	0	0.115264	0	0
CUX2	23316	broad.mit.edu	37	12	111729277	111729277	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr12:111729277C>T	uc001tsa.1	+	5	510	c.357C>T	c.(355-357)CCC>CCT	p.P119P	CUX2_uc001tsb.1_Silent_p.P174P	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	119						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TGCAGCCCCCCAGCTTTGACC	0.617000													8	108					0	0	0.307466	0	0
PRKD1	5587	broad.mit.edu	37	14	30105555	30105555	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr14:30105555G>A	uc001wqh.2	-	7	1312	c.1131C>T	c.(1129-1131)AAC>AAT	p.N377N		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	377					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CGCCACTGTCGTTCTGGCACT	0.542000													97	173					0	0	0.870114	0	0
CLEC14A	161198	broad.mit.edu	37	14	38724727	38724727	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr14:38724727G>A	uc001wum.1	-	1	848	c.501C>T	c.(499-501)AAC>AAT	p.N167N		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	167	Extracellular (Potential).|C-type lectin.					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		ACAGGTAGCCGTTGGCGCGCA	0.577000													4	74					0	0	0.217242	0	0
Unknown	0	broad.mit.edu	37	15	62539227	62539227	+	Splice_Site	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr15:62539227C>T	uc002ain.1	-	4		c.362_splice	c.e4+1		uc002ajj.1_Splice_Site_p.Q148_splice|uc010uhp.1_5'Flank|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		AGCTTACCCACCTGGTTCCTT	0.577000													7	48					0	0	0.335167	0	0
Unknown	0	broad.mit.edu	37	15	62539305	62539305	+	RNA	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr15:62539305T>C	uc002ain.1	-	4		c.285A>G			uc002ajj.1_Missense_Mutation_p.T123A|uc010uhp.1_RNA|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		TCCCTCAACGTGTGCACCTGC	0.607000													4	31					0	0	0.150653	0	0
Unknown	0	broad.mit.edu	37	15	62539307	62539307	+	RNA	SNP	T	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr15:62539307T>A	uc002ain.1	-	4		c.283A>T			uc002ajj.1_Missense_Mutation_p.H122L|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		CCTCAACGTGTGCACCTGCCC	0.607000													3	30					0	0	0.115264	0	0
NEO1	4756	broad.mit.edu	37	15	73541990	73541990	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr15:73541990C>T	uc002avm.3	+	11	1964	c.1822C>T	c.(1822-1824)CGA>TGA	p.R608*	NEO1_uc010ukx.1_Nonsense_Mutation_p.R608*|NEO1_uc010uky.1_Nonsense_Mutation_p.R608*|NEO1_uc010ukz.1_Nonsense_Mutation_p.R32*|NEO1_uc002avn.3_Nonsense_Mutation_p.R273*	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	608	Extracellular (Potential).|Fibronectin type-III 2.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						GTATAGTTTCCGAGTGGTGGC	0.378000													4	117					0	0	0.248553	0	0
NAGPA	51172	broad.mit.edu	37	16	5081777	5081777	+	Silent	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr16:5081777T>C	uc002cyg.2	-	3	672	c.651A>G	c.(649-651)CAA>CAG	p.Q217Q	ALG1_uc002cyj.2_5'Flank|NAGPA_uc010buc.2_5'Flank|NAGPA_uc002cyf.2_Silent_p.Q75Q|NAGPA_uc002cyh.2_RNA|NAGPA_uc002cyi.2_Intron|NAGPA_uc010uxx.1_3'UTR	NM_016256	NP_057340	Q9UK23	NAGPA_HUMAN	N-acetylglucosamine-1-phosphodiester	217	Lumenal (Potential).				carbohydrate metabolic process|lysosome organization|protein modification process|protein targeting to lysosome	Golgi cisterna membrane|integral to membrane	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity				0					N-Acetyl-D-glucosamine(DB00141)	ACTCTGTGGCTTGGCTCTCGT	0.572000													147	222					0	0	0.870114	0	0
PDP2	57546	broad.mit.edu	37	16	66919576	66919576	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr16:66919576C>T	uc002eqk.1	+	2	1551	c.1389C>T	c.(1387-1389)CTC>CTT	p.L463L		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	463					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		CCAGCGGGCTCCACGAGGCTG	0.617000													9	10					0	0	0.307466	0	0
PKD1L2	114780	broad.mit.edu	37	16	81161555	81161555	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr16:81161555G>T	uc002fgh.1	-	37	6160	c.6160C>A	c.(6160-6162)CGT>AGT	p.R2054S	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2054	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TATGGTGCACGGCATCCGTTG	0.567000													3	44					0.00909568	0.0093097	0.150653	1	0
MINK1	50488	broad.mit.edu	37	17	4797498	4797498	+	Silent	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr17:4797498T>C	uc010vsl.1	+	23	2896	c.2700T>C	c.(2698-2700)CAT>CAC	p.H900H	MINK1_uc010vsk.1_Silent_p.H871H|MINK1_uc010vsm.1_Silent_p.H880H|MINK1_uc010vsn.1_Silent_p.H863H|MINK1_uc010vso.1_Silent_p.H808H|MINK1_uc010vsp.1_Silent_p.H361H	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	900	Mediates interaction with RAP2A.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						ACCTGCTGCATGCTGACAGCA	0.622000													40	99					0	0	0.864702	0	0
MYOM1	8736	broad.mit.edu	37	18	3135615	3135615	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr18:3135615G>A	uc002klp.2	-	15	2473	c.2139C>T	c.(2137-2139)CGC>CGT	p.R713R	MYOM1_uc002klq.2_Silent_p.R713R	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	713	Fibronectin type-III 2.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AATTAGAACAGCGGACACGGA	0.512000													3	52					0	0	0.150653	0	0
AQP4	361	broad.mit.edu	37	18	24442317	24442317	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr18:24442317G>A	uc002kwa.2	-	2	339	c.276C>T	c.(274-276)AGC>AGT	p.S92S	C18orf16_uc002kwb.2_5'Flank|C18orf16_uc010xbm.1_5'Flank|AQP4_uc002kvz.2_Silent_p.S70S	NM_001650	NP_001641	P55087	AQP4_HUMAN	aquaporin 4 isoform a	92	Cytoplasmic (Potential).				cellular response to interferon-gamma|excretion|nervous system development	cytoplasm|external side of plasma membrane|integral to plasma membrane	water channel activity				0	all_cancers(21;0.0172)|Lung NSC(5;0.00299)|all_lung(6;0.00747)|Ovarian(20;0.124)					TGTGGCCACCGCTGATATGGC	0.557000													5	130					0	0	0.217242	0	0
FAM59A	64762	broad.mit.edu	37	18	29848207	29848207	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr18:29848207T>C	uc002kxl.2	-	6	2314	c.2258A>G	c.(2257-2259)GAA>GGA	p.E753G	FAM59A_uc002kxk.1_Missense_Mutation_p.E752G	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	753										ovary(1)|skin(1)	2						CTTGGGGTCTTCCTCAGCACC	0.522000													38	48					0	0	0.827153	0	0
TNFSF14	8740	broad.mit.edu	37	19	6670062	6670062	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr19:6670062G>A	uc002mfk.1	-	2	401	c.19C>T	c.(19-21)CGG>TGG	p.R7W	TNFSF14_uc002mfj.1_Missense_Mutation_p.R7W	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	7	Cytoplasmic (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						ACTGAGGGCCGTACGACACTC	0.602000													4	89					0	0	0.150653	0	0
ZNF91	7644	broad.mit.edu	37	19	23544867	23544867	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr19:23544867T>C	uc002nre.2	-	4	1027	c.914A>G	c.(913-915)CAT>CGT	p.H305R	ZNF91_uc010xrj.1_Missense_Mutation_p.H273R	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	305	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				GGTTGAAGAATGGCTAAAAGC	0.413000													4	112					0	0	0.184627	0	0
LRRC4B	94030	broad.mit.edu	37	19	51022537	51022537	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr19:51022537G>A	uc002pss.2	-	3	570	c.433C>T	c.(433-435)CGG>TGG	p.R145W		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	145	LRR 3.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GTGGTCAGCCGGTTGTCAAAA	0.622000													46	25					0	0	0.870114	0	0
MYT1L	23040	broad.mit.edu	37	2	1926215	1926215	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr2:1926215C>T	uc002qxe.2	-	10	2153	c.1326G>A	c.(1324-1326)ACG>ACA	p.T442T	MYT1L_uc002qxd.2_Silent_p.T442T|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	442					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TTGCTCTTTCCGTTTCCAAAG	0.547000													66	98					0	0	0.870114	0	0
C2orf43	60526	broad.mit.edu	37	2	21001131	21001131	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr2:21001131C>G	uc002rec.2	-	2	126	c.93G>C	c.(91-93)TGG>TGC	p.W31C	C2orf43_uc002rea.1_Missense_Mutation_p.W31C|C2orf43_uc002reb.1_Intron|C2orf43_uc010yka.1_Missense_Mutation_p.W31C|C2orf43_uc010ykb.1_Intron|C2orf43_uc010ykc.1_Missense_Mutation_p.W31C|C2orf43_uc010ykd.1_Missense_Mutation_p.W31C|C2orf43_uc010yke.1_Missense_Mutation_p.W31C|C2orf43_uc010ykf.1_Intron	NM_021925	NP_068744	Q9H6V9	CB043_HUMAN	hypothetical protein LOC60526	31											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAGGTCTGTCCAGGGCCCAC	0.423000													45	81					0	0	0.870114	0	0
RANBP2	5903	broad.mit.edu	37	2	109382889	109382889	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr2:109382889A>G	uc002tem.3	+	20	6020	c.5894A>G	c.(5893-5895)GAC>GGC	p.D1965G		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1965					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						GGCAAAAAAGACCCCAATTTC	0.388000													13	295					0	0	0.557998	0	0
BUB1	699	broad.mit.edu	37	2	111398886	111398886	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr2:111398886G>A	uc002tgc.2	-	22	2893	c.2781C>T	c.(2779-2781)AAC>AAT	p.N927N	BUB1_uc010yxh.1_Silent_p.N907N|BUB1_uc010fkb.2_Intron	NM_004336	NP_004327	O43683	BUB1_HUMAN	budding uninhibited by benzimidazoles 1	927	Protein kinase.				apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)|breast(2)|stomach(1)|ovary(1)|kidney(1)	7		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		ACACTTGCCCGTTTCCAAGTA	0.383000													4	109					0	0	0.217242	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								48	70					0	0	0.870114	0	0
FRG1B	284802	broad.mit.edu	37	20	29625875	29625875	+	Missense_Mutation	SNP	T	C	C	rs143761036	by1000genomes	TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr20:29625875T>C	uc010ztl.1	+	2	61	c.29T>C	c.(28-30)ATC>ACC	p.I10T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGTACAGAATCGCCCTGAAA	0.353000													3	67					0	0	0.217242	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353000													4	68					0	0	0.184627	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378000													8	171					0	0	0.335167	0	0
FAM83D	81610	broad.mit.edu	37	20	37580213	37580213	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr20:37580213A>C	uc002xjg.2	+	4	939	c.898A>C	c.(898-900)AGT>CGT	p.S300R		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	270					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				ATTAAACAGCAGTAACTTGGT	0.428000													4	75					0	0	0.150653	0	0
CSTF1	1477	broad.mit.edu	37	20	54974333	54974333	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr20:54974333A>G	uc002xxl.1	+	5	1156	c.956A>G	c.(955-957)AAA>AGA	p.K319R	CSTF1_uc002xxm.1_Missense_Mutation_p.K319R|CSTF1_uc002xxn.1_Missense_Mutation_p.K319R|CSTF1_uc002xxo.1_Missense_Mutation_p.K262R	NM_001033521	NP_001028693	Q05048	CSTF1_HUMAN	cleavage stimulation factor subunit 1	319	WD 5.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(1)	1			Colorectal(105;0.202)			AAAAATTCTAAATACATTCTC	0.388000													6	84					0	0	0.217242	0	0
TIAM1	7074	broad.mit.edu	37	21	32589897	32589897	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr21:32589897T>C	uc002yow.1	-	10	2586	c.2114A>G	c.(2113-2115)AAG>AGG	p.K705R	TIAM1_uc011adk.1_Missense_Mutation_p.K705R|TIAM1_uc011adl.1_Missense_Mutation_p.K705R|TIAM1_uc002yox.1_Missense_Mutation_p.K313R	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	705					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						TCCCTGCTTCTTTTTGGAGGT	0.522000													84	91					0	0	0.870114	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032410	46032410	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr21:46032410C>T	uc002zfo.1	+	1	415	c.393C>T	c.(391-393)CCC>CCT	p.P131P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	131	19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						GCTGCAAGCCCGTGTGCTGCG	0.632000													6	272					0	0	0.248553	0	0
NEFH	4744	broad.mit.edu	37	22	29885739	29885739	+	Missense_Mutation	SNP	T	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr22:29885739T>A	uc003afo.2	+	4	2181	c.2110T>A	c.(2110-2112)TCC>ACC	p.S704T	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	710	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|Tail.|21.				cell death|nervous system development	neurofilament					0						AGAAGCAAAGTCCCCTGAGAA	0.557000													5	157					0	0	0.184627	0	0
CNTN3	5067	broad.mit.edu	37	3	74383984	74383984	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr3:74383984G>T	uc003dpm.1	-	12	1650	c.1570C>A	c.(1570-1572)CAA>AAA	p.Q524K		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	524	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GGGTCATGTTGTACCTGGCAG	0.418000													37	61					1.15183e-24	1.23715e-24	0.847076	1	0
OR5K3	403277	broad.mit.edu	37	3	98109669	98109669	+	Missense_Mutation	SNP	C	T	T	rs150899692		TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr3:98109669C>T	uc011bgw.1	+	1	160	c.160C>T	c.(160-162)CGT>TGT	p.R54C		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATAGAGCAACGTCTTCACAC	0.413000													95	178					0	0	0.870114	0	0
PHC3	80012	broad.mit.edu	37	3	169835095	169835095	+	Silent	SNP	A	G	G			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr3:169835095A>G	uc010hws.1	-	10	2140	c.2076T>C	c.(2074-2076)CCT>CCC	p.P692P	PHC3_uc003fgl.2_Silent_p.P704P|PHC3_uc011bpq.1_Silent_p.P651P	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	692	HD1.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			TAGCCTGTGGAGGTTTGTTCT	0.433000													6	65					0	0	0.217242	0	0
OPA1	4976	broad.mit.edu	37	3	193360822	193360822	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr3:193360822G>A	uc003ftm.2	+	11	1358	c.1124G>A	c.(1123-1125)TGT>TAT	p.C375Y	OPA1_uc003ftg.2_Missense_Mutation_p.C430Y|OPA1_uc003fth.2_Missense_Mutation_p.C394Y|OPA1_uc003fti.2_Missense_Mutation_p.C412Y|OPA1_uc003ftj.2_Missense_Mutation_p.C393Y|OPA1_uc003ftk.2_Missense_Mutation_p.C376Y|OPA1_uc003ftl.2_Missense_Mutation_p.C357Y|OPA1_uc003ftn.2_Missense_Mutation_p.C339Y	NM_015560	NP_056375	O60313	OPA1_HUMAN	optic atrophy 1 isoform 1	375	Mitochondrial intermembrane (By similarity).				apoptosis|axon transport of mitochondrion|inner mitochondrial membrane organization|mitochondrial fission|mitochondrial fusion|positive regulation of anti-apoptosis|response to stimulus|visual perception	dendrite|integral to membrane|mitochondrial crista|mitochondrial intermembrane space|mitochondrial outer membrane	GTP binding|GTPase activity|magnesium ion binding|protein binding				0	all_cancers(143;9.56e-09)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;9.19e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000162)		AAAGAAGGCTGTACCGTTAGC	0.323000													3	44					0	0	0.150653	0	0
LMLN	89782	broad.mit.edu	37	3	197707307	197707307	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr3:197707307C>T	uc011buo.1	+	6	682	c.660C>T	c.(658-660)ACC>ACT	p.T220T	LMLN_uc003fyt.2_Silent_p.T168T|LMLN_uc010iar.2_Silent_p.T220T|LMLN_uc010ias.2_Silent_p.T168T|LMLN_uc003fyu.2_5'UTR	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	220					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		CTCTGGCCACCGAGAGATGCA	0.502000													5	203					0	0	0.184627	0	0
HTT	3064	broad.mit.edu	37	4	3225848	3225848	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr4:3225848G>A	uc011bvq.1	+	57	7906	c.7761G>A	c.(7759-7761)CCG>CCA	p.P2587P		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2585					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CTCTGTCTCCGGCTACTACAG	0.512000													12	266					0	0	0.479597	0	0
ANKRD17	26057	broad.mit.edu	37	4	73942823	73942823	+	Splice_Site	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr4:73942823T>C	uc003hgp.2	-	33	7705	c.7588_splice	c.e33-1	p.G2530_splice	ANKRD17_uc003hgo.2_Splice_Site_p.G2417_splice|ANKRD17_uc003hgq.2_Splice_Site_p.G2279_splice|ANKRD17_uc003hgr.2_Splice_Site_p.G2529_splice	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a						interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGGCATACCCTTAAAAAAGGA	0.388000													5	29					0	0	0.248553	0	0
TRIO	7204	broad.mit.edu	37	5	14498282	14498282	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr5:14498282G>A	uc003jff.2	+	52	8138	c.8132G>A	c.(8131-8133)CGC>CAC	p.R2711H	TRIO_uc003jfg.2_RNA	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	2711	Ig-like C2-type.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GTCTGTGGCCGCCCCAAAGCC	0.542000													3	74					0	0	0.184627	0	0
PCDHB17	54661	broad.mit.edu	37	5	140537080	140537080	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr5:140537080G>T	uc003lis.2	+	1	1501	c.1501G>T	c.(1501-1503)GCC>TCC	p.A501S		NR_001280				SubName: Full=Protocadherin-psi1;												0						CCTGCCCCTCGCCTCCCTGGT	0.652000													99	172					3.98107e-36	4.32941e-36	0.870114	1	0
FCHSD1	89848	broad.mit.edu	37	5	141023973	141023973	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr5:141023973C>T	uc003llk.2	-	17	1726	c.1675G>A	c.(1675-1677)GGA>AGA	p.G559R	FCHSD1_uc010jgg.2_Missense_Mutation_p.G242R|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	559	SH3 2.								FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCACTCTGTCCGGTGTAGCTG	0.622000													20	23					0	0	0.608945	0	0
SLC36A3	285641	broad.mit.edu	37	5	150663635	150663635	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr5:150663635G>A	uc003ltw.2	-	8	1363	c.944C>T	c.(943-945)GCC>GTC	p.A315V	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Missense_Mutation_p.A300V|SLC36A3_uc003ltx.2_Missense_Mutation_p.A356V	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	315	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGTGATGCTGGCCTGGGTGTC	0.418000													5	160					0	0	0.217242	0	0
RREB1	6239	broad.mit.edu	37	6	7211105	7211105	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:7211105G>A	uc003mxc.2	+	7	884	c.494G>A	c.(493-495)CGT>CAT	p.R165H	RREB1_uc010jnw.2_Missense_Mutation_p.R165H|RREB1_uc003mxb.2_Missense_Mutation_p.R165H|RREB1_uc010jnx.2_Missense_Mutation_p.R165H|RREB1_uc003mxd.2_Missense_Mutation_p.R165H	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	165					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCTCTGAAACGTAGGCGATTG	0.502000													5	190					0	0	0.184627	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32975227	32975227	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:32975227C>T	uc003ocr.2	-	3	550	c.474G>A	c.(472-474)GTG>GTA	p.V158V	HLA-DOA_uc010juj.2_Silent_p.V128V|HLA-DOA_uc010jui.2_Silent_p.V158V	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	158	Extracellular (Potential).|Alpha-2.|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						TGGTCTGGGCCACTCCCTCAG	0.577000													91	186					0	0	0.870114	0	0
OPN5	221391	broad.mit.edu	37	6	47775993	47775993	+	Missense_Mutation	SNP	T	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:47775993T>A	uc003ozc.2	+	5	865	c.860T>A	c.(859-861)CTC>CAC	p.L287H	OPN5_uc003ozd.2_Missense_Mutation_p.L122H	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	287	Extracellular (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						CCCATACAGCTCTCTGTGGTG	0.463000													63	112					0	0	0.870114	0	0
PRIM2	5558	broad.mit.edu	37	6	57512602	57512602	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:57512602T>C	uc003pdx.2	+	15	1517	c.1430T>C	c.(1429-1431)GTC>GCC	p.V477A		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	477					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		AAACCAAGTGTCCAGAAAACC	0.398000													45	403					0	0	0.870114	0	0
AHI1	54806	broad.mit.edu	37	6	135787392	135787392	+	Silent	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:135787392G>A	uc003qgi.2	-	7	693	c.309C>T	c.(307-309)AAC>AAT	p.N103N	AHI1_uc003qgh.2_Silent_p.N103N|AHI1_uc003qgj.2_Silent_p.N103N|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Silent_p.N103N	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	103						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		CTAACTGTGTGTTCCTCAATT	0.393000													85	95					0	0	0.870114	0	0
PKD1L1	168507	broad.mit.edu	37	7	47933628	47933628	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr7:47933628C>G	uc003tny.1	-	15	2300	c.2300G>C	c.(2299-2301)AGC>ACC	p.S767T		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	767	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ACAGTAGTTGCTGTACACCAC	0.572000													33	68					0	0	0.834066	0	0
ABCA13	154664	broad.mit.edu	37	7	48411941	48411941	+	Silent	SNP	A	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr7:48411941A>T	uc003toq.2	+	33	11005	c.10980A>T	c.(10978-10980)TCA>TCT	p.S3660S	ABCA13_uc010kys.1_Silent_p.S734S|ABCA13_uc003tos.1_Silent_p.S486S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3660	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTGGGATGTCAGTCGTCATGC	0.458000													6	266					0	0	0.278610	0	0
MUC17	140453	broad.mit.edu	37	7	100679973	100679973	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr7:100679973C>T	uc003uxp.1	+	3	5329	c.5276C>T	c.(5275-5277)ACG>ATG	p.T1759M	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1759	Extracellular (Potential).|59 X approximate tandem repeats.|27.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCAGCACCACGCCGGTACTC	0.502000													223	351					0	0	0.870114	0	0
NUP205	23165	broad.mit.edu	37	7	135298930	135298930	+	Silent	SNP	C	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr7:135298930C>T	uc003vsw.2	+	23	3250	c.3219C>T	c.(3217-3219)TGC>TGT	p.C1073C		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1073					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						TATGTGCATGCTCTGATACAT	0.358000													4	87					0	0	0.184627	0	0
TSTA3	7264	broad.mit.edu	37	8	144696860	144696860	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr8:144696860T>C	uc003yza.2	-	5	434	c.398A>G	c.(397-399)AAT>AGT	p.N133S	TSTA3_uc003yzb.2_Missense_Mutation_p.N133S|TSTA3_uc011lko.1_Missense_Mutation_p.M163V	NM_003313	NP_003304	Q13630	FCL_HUMAN	tissue specific transplantation antigen P35B	133					'de novo' GDP-L-fucose biosynthetic process|leukocyte cell-cell adhesion		coenzyme binding|electron carrier activity|GDP-4-dehydro-D-rhamnose reductase activity|GDP-L-fucose synthase activity|isomerase activity			pancreas(1)	1	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.17e-38)|Epithelial(56;7.17e-37)|all cancers(56;2.46e-32)|Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)		NADH(DB00157)	GGGAGGCCCATTGTGGATCTG	0.662000													3	128					0	0	0.115264	0	0
SH3GL2	6456	broad.mit.edu	37	9	17795580	17795580	+	Missense_Mutation	SNP	G	A	A	rs139383722		TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr9:17795580G>A	uc003zna.2	+	9	1186	c.898G>A	c.(898-900)GAC>AAC	p.D300N	SH3GL2_uc011lmy.1_Missense_Mutation_p.D253N	NM_003026	NP_003017	Q99962	SH3G2_HUMAN	SH3-domain GRB2-like 2	300	SH3.				axon guidance|central nervous system development|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport	cytosol|Golgi membrane|plasma membrane	identical protein binding|lipid binding	p.D300N(1)		skin(1)	1				GBM - Glioblastoma multiforme(50;2.71e-10)|Lung(42;0.203)		AGCTCTGTACGACTTTGAACC	0.463000													25	36					0	0	0.750413	0	0
ECM2	1842	broad.mit.edu	37	9	95277148	95277148	+	Missense_Mutation	SNP	C	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr9:95277148C>A	uc004ash.2	-	4	884	c.819G>T	c.(817-819)GAG>GAT	p.E273D	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Missense_Mutation_p.E251D|ECM2_uc011lty.1_Missense_Mutation_p.E273D|ECM2_uc004asg.2_Missense_Mutation_p.E251D	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	273	Poly-Glu.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						cctcctcatcctcctcctcct	0.398000													4	118					0.00024832	0.000260287	0.150653	1	0
C9orf98	158067	broad.mit.edu	37	9	135730311	135730311	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr9:135730311G>A	uc004cbu.1	-	5	891	c.335C>T	c.(334-336)ACA>ATA	p.T112I	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_5'UTR	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	112						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		GCTGGGAACTGTCTGAAGGAA	0.567000													4	64					0	0	0.184627	0	0
RALGDS	5900	broad.mit.edu	37	9	135979652	135979652	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr9:135979652T>C	uc004cco.2	-	10	1689	c.1669A>G	c.(1669-1671)ACG>GCG	p.T557A	RALGDS_uc004ccn.2_5'Flank|RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Missense_Mutation_p.T545A|RALGDS_uc004ccr.2_Missense_Mutation_p.T556A|RALGDS_uc011mcv.1_Missense_Mutation_p.T528A|RALGDS_uc004ccs.2_Missense_Mutation_p.T502A|RALGDS_uc011mcw.1_Missense_Mutation_p.T628A|RALGDS_uc004ccv.1_Missense_Mutation_p.T326A|RALGDS_uc004ccu.1_Missense_Mutation_p.T326A	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	557	Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		ACTCTCACCGTCTCCTTCGGC	0.657000			T	CIITA	PMBL|Hodgkin Lymphona|								28	33					0	0	0.760397	0	0
Unknown	0	broad.mit.edu	37	MT	7919	7919	+	RNA	SNP	G	C	C			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chrM:7919G>C	uc004cou.3	+	1		c.334G>C			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		ACGAGTACACCGACTACGGCG	0.493000													3	23					0	0	0.150653	0	0
IL13RA1	3597	broad.mit.edu	37	X	117900529	117900529	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chrX:117900529A>G	uc004eqs.2	+	7	908	c.865A>G	c.(865-867)AGA>GGA	p.R289G	IL13RA1_uc004eqt.1_Missense_Mutation_p.R289G	NM_001560	NP_001551	P78552	I13R1_HUMAN	interleukin 13 receptor, alpha 1 precursor	289	Extracellular (Potential).					interleukin-13 receptor complex	cytokine receptor activity				0						AGAATTTGAGAGAAATGTGGA	0.338000													5	55					0	0	0.217242	0	0
FNBP4	23360	broad.mit.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	-	-	rs59413596		TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr11:47788664_47788669delGGTGGT	uc009ylv.2	-	1	325_330	c.172_177delACCACC	c.(172-177)ACCACCdel	p.TT58del	FNBP4_uc001ngj.2_5'UTR|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	58_59										ovary(1)	1						CAGTCACCGCGGTGGTGGTGGTCGTC	0.748													5	3	---	---	---	---					
KIAA0182	23199	broad.mit.edu	37	16	85682290	85682290	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr16:85682290delC	uc002fix.2	+	3	433	c.359delC	c.(358-360)ACCfs	p.T120fs	KIAA0182_uc002fiw.2_Frame_Shift_Del_p.T16fs|KIAA0182_uc002fiy.2_Frame_Shift_Del_p.T47fs	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	120							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						GTGCCCAGCACCCCCCCCGTG	0.687													9	215	---	---	---	---					
DDX5	1655	broad.mit.edu	37	17	62500099	62500102	+	Splice_Site	DEL	ACAG	-	-			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr17:62500099_62500102delACAG	uc002jek.2	-	4	688	c.441_splice	c.e4+1	p.S147_splice	DDX5_uc010deh.2_Splice_Site_p.S147_splice|DDX5_uc002jej.2_Splice_Site_p.S42_splice|DDX5_uc010wqa.1_Intron|DDX5_uc002jel.1_5'Flank	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5						cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TCCCAAACTTACAGACAATGTTTT	0.397			T	ETV4	prostate								118	248	---	---	---	---					
TTK	7272	broad.mit.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	-	-			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:80751897delA	uc003pjc.2	+	22	2626	c.2552delA	c.(2551-2553)GAAfs	p.E851fs	TTK_uc003pjb.3_Frame_Shift_Del_p.E850fs	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	851					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.R838fs*4(3)		ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		AAGACTTTTGAAAAAAAAAGG	0.299													7	115	---	---	---	---					
ZNF292	23036	broad.mit.edu	37	6	87968456	87968457	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:87968456_87968457delAG	uc003plm.3	+	8	5150_5151	c.5109_5110delAG	c.(5107-5112)AAAGAGfs	p.K1703fs		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1703_1704					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		CTGATGTAAAAGAGAATTTCAA	0.327													12	31	---	---	---	---					
C6orf58	352999	broad.mit.edu	37	6	127911321	127911321	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr6:127911321delC	uc003qbh.2	+	5	776	c.764delC	c.(763-765)ACCfs	p.T255fs		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	255						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		TTTCCTACAACCTTGATTAGA	0.388													7	190	---	---	---	---					
OR2A14	135941	broad.mit.edu	37	7	143826799	143826799	+	Frame_Shift_Del	DEL	C	-	-			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr7:143826799delC	uc011kua.1	+	1	594	c.594delC	c.(592-594)ATCfs	p.I198fs		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	198	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AGGTGGTCATCTTTGCAGCCT	0.577													184	245	---	---	---	---					
GOT1L1	137362	broad.mit.edu	37	8	37791833	37791834	+	Frame_Shift_Ins	INS	-	T	T			TCGA-HT-7687-01A-11D-2253-08	TCGA-HT-7687-10A-01D-2253-08									Somatic	Phase_I	Capture				Illumina GAIIx	e34b8386-87a8-421b-a6bd-508c451d5300	4172944b-df65-47bc-8567-9748e088836a	g.chr8:37791833_37791834insT	uc011lbj.1	-	9	1343_1344	c.1243_1244insA	c.(1243-1245)ACAfs	p.T415fs		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	415					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			TCCAATCAGTGTTTTTTTTTCC	0.371													8	94	---	---	---	---					
