Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16946434	16946434	+	RNA	SNP	C	T	T	rs367060		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:16946434C>T	uc010ocf.1	-	3		c.464G>A			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						CTCAGCCTTCCGCCGGGCCAG	0.672000													4	19					0	0	0.000602	0	0
CROCCL1	84809	broad.mit.edu	37	1	16946438	16946438	+	RNA	SNP	G	A	A	rs28392876	by1000genomes	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:16946438G>A	uc010ocf.1	-	3		c.460C>T			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						GCCTTCCGCCGGGCCAGCAGC	0.672000													4	15					0	0	0.000602	0	0
FLG	2312	broad.mit.edu	37	1	152284999	152284999	+	Missense_Mutation	SNP	C	T	T	rs142483068	byFrequency	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:152284999C>T	uc001ezu.1	-	3	2399	c.2363G>A	c.(2362-2364)CGA>CAA	p.R788Q	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	788	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCTGAACGTCGAGACCTTTC	0.567000									Ichthyosis				147	385					0	0	0.014410	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155931587	155931587	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:155931587T>C	uc001fmt.2	-	11	1451	c.1333A>G	c.(1333-1335)ATC>GTC	p.I445V	ARHGEF2_uc001fmr.2_Missense_Mutation_p.I417V|ARHGEF2_uc001fms.2_Missense_Mutation_p.I444V|ARHGEF2_uc001fmu.2_Missense_Mutation_p.I489V|ARHGEF2_uc010pgt.1_Missense_Mutation_p.I418V|ARHGEF2_uc010pgu.1_Missense_Mutation_p.I490V	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	445					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CGGTTGTAGATCTCCTGCAGA	0.607000													43	48					0	0	0.008740	0	0
IFI16	3428	broad.mit.edu	37	1	158988254	158988254	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:158988254C>T	uc001ftf.1	+	6	1392	c.785C>T	c.(784-786)TCA>TTA	p.S262L	IFI16_uc001ftg.2_Missense_Mutation_p.S262L|IFI16_uc010pis.1_Missense_Mutation_p.S206L	NM_005531	NP_005522	Q16666	IF16_HUMAN	interferon, gamma-inducible protein 16	262	HIN-200 1.				cell proliferation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|monocyte differentiation|negative regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	cytoplasm|nuclear speck|nucleolus	double-stranded DNA binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)					ATCATCATATCAGATTATTTG	0.368000													10	65					0	0	0.006214	0	0
IPO9	55705	broad.mit.edu	37	1	201817721	201817721	+	Silent	SNP	A	G	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:201817721A>G	uc001gwz.2	+	4	563	c.513A>G	c.(511-513)ACA>ACG	p.T171T		NM_018085	NP_060555	Q96P70	IPO9_HUMAN	importin 9	171					protein import into nucleus	cytoplasm|nucleus	histone binding|protein transporter activity			ovary(2)	2						GTGTGCTGACAGGTACCAGAA	0.512000													19	25					0	0	0.008871	0	0
PTER	9317	broad.mit.edu	37	10	16553190	16553190	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr10:16553190A>C	uc001iog.1	+	6	1192	c.985A>C	c.(985-987)ATA>CTA	p.I329L	PTER_uc001ioh.1_Missense_Mutation_p.I329L|PTER_uc001ioi.1_Missense_Mutation_p.I329L|PTER_uc009xjp.1_Missense_Mutation_p.I282L	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	329					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						GCTGAGAGGCATAACTGAGAA	0.383000													7	136					0	0	0.003080	0	0
OR51B2	79345	broad.mit.edu	37	11	5345181	5345181	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr11:5345181A>G	uc001mao.1	-	1	402	c.347T>C	c.(346-348)ATG>ACG	p.M116T	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCATATGCCATTGCCAGGAG	0.458000													7	85					0	0	0.004482	0	0
SCGB2A2	4250	broad.mit.edu	37	11	62037739	62037739	+	Silent	SNP	C	T	T	rs137975337	byFrequency	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr11:62037739C>T	uc001ntc.2	+	1	110	c.51C>T	c.(49-51)TAC>TAT	p.Y17Y	SCGB2A2_uc009ynx.2_Silent_p.Y17Y	NM_002411	NP_002402	Q13296	SG2A2_HUMAN	secretoglobin, family 2A, member 2 precursor	17						extracellular region	steroid binding			ovary(1)	1						AGCACTGCTACGCAGGTGAGT	0.592000													94	109					0	0	0.014410	0	0
C12orf71	728858	broad.mit.edu	37	12	27234398	27234398	+	Missense_Mutation	SNP	C	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr12:27234398C>A	uc001rhq.2	-	2	558	c.519G>T	c.(517-519)ATG>ATT	p.M173I		NM_001080406	NP_001073875	A8MTZ7	CL071_HUMAN	hypothetical protein LOC728858	173											0						CCTGGCTTATCATCTGCCATG	0.463000													38	61					4.92203e-23	5.20599e-23	0.006230	1	0
OR10G3	26533	broad.mit.edu	37	14	22038134	22038134	+	Missense_Mutation	SNP	C	T	T	rs142649226	byFrequency	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr14:22038134C>T	uc010tmb.1	-	1	742	c.742G>A	c.(742-744)GTG>ATG	p.V248M		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		ACGGTGACCACGGTTACATGG	0.577000													20	110					0	0	0.008871	0	0
FBXO33	254170	broad.mit.edu	37	14	39870639	39870639	+	Silent	SNP	G	A	A	rs144987416		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr14:39870639G>A	uc001wvk.2	-	3	1475	c.1137C>T	c.(1135-1137)ATC>ATT	p.I379I		NM_203301	NP_976046	Q7Z6M2	FBX33_HUMAN	F-box protein 33	379											0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00121)|Epithelial(34;0.169)	GBM - Glioblastoma multiforme(112;0.0425)		CTTCACTCTTGATATCAAAAG	0.398000													43	53					0	0	0.006999	0	0
NRXN3	9369	broad.mit.edu	37	14	79117539	79117539	+	Translation_Start_Site	SNP	C	T	T			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr14:79117539C>T	uc001xun.2	+	3	463	c.-28C>T	c.(-30--26)CACGA>CATGA		NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.T125M	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor						axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		ATTCTTACCACGACGGGCTAC	0.517000													14	122					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	15	30776907	30776907	+	RNA	SNP	G	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr15:30776907G>A	uc001zei.1	+	2		c.335G>A								Homo sapiens cDNA clone IMAGE:4804281.																		CGCTCAGAGCGGCTTTCTTTT	0.408000													2	2					0	0	0.004672	0	0
SLC28A2	9153	broad.mit.edu	37	15	45561537	45561537	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr15:45561537T>C	uc001zva.2	+	14	1435	c.1370T>C	c.(1369-1371)GTC>GCC	p.V457A		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	457	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TTCACTCAGGTCATCTGCTCC	0.478000													32	112					0	0	0.010818	0	0
KIAA0556	23247	broad.mit.edu	37	16	27640072	27640072	+	Silent	SNP	T	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr16:27640072T>C	uc002dow.2	+	4	255	c.231T>C	c.(229-231)AAT>AAC	p.N77N		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	77										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						ACGGTGCCAATTCGGAGCTGA	0.522000													43	142					0	0	0.011902	0	0
TP53	7157	broad.mit.edu	37	17	7578542	7578542	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr17:7578542G>C	uc002gim.2	-	5	582	c.388C>G	c.(388-390)CTC>GTC	p.L130V	TP53_uc002gig.1_Missense_Mutation_p.L130V|TP53_uc002gih.2_Missense_Mutation_p.L130V|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Missense_Mutation_p.L130V|TP53_uc010cni.1_Missense_Mutation_p.L130V|TP53_uc002gij.2_Missense_Mutation_p.L130V|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.L37V|TP53_uc002gio.2_5'UTR|TP53_uc010vug.1_Missense_Mutation_p.L91V	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	130	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		L -> H (in sporadic cancers; somatic mutation).|L -> F (in sporadic cancers; somatic mutation).|L -> I (in a sporadic cancer; somatic mutation).|L -> R (in sporadic cancers; somatic mutation).|L -> V (in sporadic cancers; somatic mutation).|L -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.L130V(11)|p.L130F(7)|p.L130R(7)|p.0?(7)|p.Y126_K132delYSPALNK(6)|p.L130L(4)|p.L130H(3)|p.Y126_N131delYSPALN(3)|p.L130fs*19(2)|p.L130fs*41(2)|p.Y126fs*11(1)|p.S127_Q136del10(1)|p.A129_L130insXX(1)|p.A129_N131delALN(1)|p.L130P(1)|p.V73fs*9(1)|p.Y126fs*18(1)|p.L130fs*39(1)|p.L130fs*16(1)|p.A129_K132delALNK(1)|p.L130_M133delLNKM(1)|p.N131fs*27(1)|p.P13fs*18(1)|p.S127fs*36(1)|p.L130del(1)|p.L130fs*40(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATCTTGTTGAGGGCAGGGGAG	0.552000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			30	3					0	0	0.006320	0	0
MYO1F	4542	broad.mit.edu	37	19	8620581	8620581	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr19:8620581C>T	uc002mkg.2	-	2	217	c.103G>A	c.(103-105)GCC>ACC	p.A35T	MYO1F_uc002mkh.2_Missense_Mutation_p.A35T|MYO1F_uc010xkf.1_Missense_Mutation_p.A35T	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	35	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CGGAGGTTGGCGGCAATGGCG	0.617000													26	61					0	0	0.005443	0	0
ICAM3	3385	broad.mit.edu	37	19	10445307	10445307	+	Silent	SNP	A	G	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr19:10445307A>G	uc002mob.2	-	5	1144	c.1089T>C	c.(1087-1089)AAT>AAC	p.N363N	RAVER1_uc002moa.2_5'Flank|ICAM3_uc010dxd.1_Silent_p.N286N	NM_002162	NP_002153	P32942	ICAM3_HUMAN	intercellular adhesion molecule 3 precursor	363	Extracellular (Potential).|Ig-like C2-type 4.				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;6.13e-09)|Epithelial(33;9.69e-06)|all cancers(31;2.05e-05)			TCTCGGTAGCATTTAGCTGAA	0.632000													35	55					0	0	0.003755	0	0
EID2B	126272	broad.mit.edu	37	19	40023429	40023429	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr19:40023429G>C	uc002olz.1	-	1	66	c.14C>G	c.(13-15)ACT>AGT	p.T5S		NM_152361	NP_689574	Q96D98	EID2B_HUMAN	EP300 interacting inhibitor of differentiation	5					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;8.61e-26)|all cancers(26;2.76e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CAACAGCCCAGTCGGCTCCGC	0.647000											OREG0025463	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	19					0	0	0.006214	0	0
IL18R1	8809	broad.mit.edu	37	2	102984511	102984511	+	Silent	SNP	T	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr2:102984511T>A	uc002tbw.3	+	3	435	c.285T>A	c.(283-285)TCT>TCA	p.S95S	IL18R1_uc010ywb.1_Silent_p.S95S|IL18R1_uc010ywc.1_Silent_p.S95S|IL18R1_uc010ywd.1_Intron|IL18R1_uc010fiy.2_Silent_p.S95S	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	95	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						ACACAGGATCTTACTTTTTCC	0.403000													12	128					0	0	0.002450	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													2	10					0	0	0.004672	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398000			Mis		gliobastoma 								40	47					0	0	0.011902	0	0
ABCA12	26154	broad.mit.edu	37	2	215843555	215843555	+	Silent	SNP	G	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr2:215843555G>A	uc002vew.2	-	32	5170	c.4950C>T	c.(4948-4950)TAC>TAT	p.Y1650Y	ABCA12_uc002vev.2_Silent_p.Y1332Y|ABCA12_uc010zjn.1_Silent_p.Y577Y	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1650					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTGAAATGCCGTAGCACCCGA	0.458000													7	135					0	0	0.001984	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37469676	37469676	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr22:37469676G>C	uc003aqs.1	-	13	1592	c.1478C>G	c.(1477-1479)GCC>GGC	p.A493G	TMPRSS6_uc003aqt.1_Missense_Mutation_p.A484G	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	493	LDL-receptor class A 2.|Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CTGGAATGTGGCTCTGCAAAC	0.587000													11	96					0	0	0.010729	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42537597	42537597	+	Missense_Mutation	SNP	A	G	G	rs1800754	by1000genomes	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr22:42537597A>G	uc003bci.2	-	6	1043	c.662T>C	c.(661-663)TTG>TCG	p.L221S	CYP2D7P1_uc003bcg.2_5'UTR|CYP2D7P1_uc003bch.2_Intron|CYP2D7P1_uc010gyv.2_Missense_Mutation_p.L5S|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.L221S	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						CAGCGTGGTCAAGGTGGTCAC	0.627000													4	32					0	0	0.009096	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133654661	133654661	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr3:133654661G>A	uc003eqa.3	-	13	2045	c.1771C>T	c.(1771-1773)CGA>TGA	p.R591*	SLCO2A1_uc003eqb.3_Nonsense_Mutation_p.R515*	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	591	Extracellular (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CAGGCCCCTCGCCTCCCCAAG	0.602000													4	28					0	0	0.009096	0	0
RHOH	399	broad.mit.edu	37	4	40245505	40245505	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr4:40245505G>A	uc003guz.2	+	3	1223	c.499G>A	c.(499-501)GTC>ATC	p.V167I		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	167					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						TGAGTGCGCCGTCCGAACTGC	0.542000													34	26					0	0	0.003755	0	0
SLC6A3	6531	broad.mit.edu	37	5	1422122	1422122	+	Missense_Mutation	SNP	C	T	T	rs138948519		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr5:1422122C>T	uc003jck.2	-	5	782	c.661G>A	c.(661-663)GTG>ATG	p.V221M		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	221	Extracellular (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body		p.V221M(1)		ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	AGGTGCAGCACGCCACGTCTG	0.662000													7	86					0	0	0.004482	0	0
C5orf34	375444	broad.mit.edu	37	5	43488036	43488036	+	Silent	SNP	T	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr5:43488036T>C	uc003jnz.1	-	13	2012	c.1695A>G	c.(1693-1695)GAA>GAG	p.E565E		NM_198566	NP_940968	Q96MH7	CE034_HUMAN	hypothetical protein LOC375444	565										breast(1)	1	Lung NSC(6;2.07e-05)					TCTTTTCAAGTTCAGAAGCAA	0.318000													3	15					0	0	0.004672	0	0
SLC12A2	6558	broad.mit.edu	37	5	127449952	127449952	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr5:127449952T>C	uc003kus.2	+	3	1089	c.925T>C	c.(925-927)TCA>CCA	p.S309P	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Missense_Mutation_p.S309P	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	309	Extracellular (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	CATTAGATTGTCATGGATTGT	0.373000													51	128					0	0	0.014410	0	0
CCNJL	79616	broad.mit.edu	37	5	159707584	159707584	+	Silent	SNP	G	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr5:159707584G>A	uc003lyb.1	-	3	480	c.228C>T	c.(226-228)GTC>GTT	p.V76V	CCNJL_uc011dee.1_Silent_p.V76V|CCNJL_uc003lyc.1_RNA|CCNJL_uc011def.1_Silent_p.V76V	NM_024565	NP_078841	Q8IV13	CCNJL_HUMAN	cyclin J-like	76	Cyclin N-terminal.					nucleus					0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGGAGGTGGTGACGTTGTAGC	0.622000													5	99					0	0	0.001168	0	0
BMP6	654	broad.mit.edu	37	6	7727731	7727731	+	Silent	SNP	G	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr6:7727731G>A	uc003mxu.3	+	1	721	c.543G>A	c.(541-543)CCG>CCA	p.P181P		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	181					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					CCGCGCACCCGCTCAACCGCA	0.741000													3	13					0	0	0.004672	0	0
ACAT2	39	broad.mit.edu	37	6	160199292	160199292	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr6:160199292C>G	uc010kjy.2	+	8	1134	c.1003C>G	c.(1003-1005)CTT>GTT	p.L335V	ACAT2_uc011efw.1_Missense_Mutation_p.L364V	NM_005891	NP_005882	Q9BWD1	THIC_HUMAN	acetyl-Coenzyme A acetyltransferase 2	335						mitochondrion|nucleolus	acetyl-CoA C-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;1.51e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		AGTTAAAGAACTTGGATTAAA	0.388000													13	21					0	0	0.001855	0	0
STK31	56164	broad.mit.edu	37	7	23871943	23871943	+	Nonsense_Mutation	SNP	T	A	A			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr7:23871943T>A	uc003sws.3	+	24	3085	c.3018T>A	c.(3016-3018)TGT>TGA	p.C1006*	STK31_uc003swt.3_Nonsense_Mutation_p.C983*|STK31_uc011jze.1_Nonsense_Mutation_p.C983*|STK31_uc010kuq.2_Nonsense_Mutation_p.C983*|STK31_uc003swv.1_Nonsense_Mutation_p.C172*	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	1006	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TGGATAAATGTATGGAGAAGA	0.333000													55	50					0	0	0.014410	0	0
TCEB3	6924	broad.mit.edu	37	1	24077560	24077561	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:24077560_24077561delAA	uc001bho.2	+	4	603_604	c.543_544delAA	c.(541-546)AGAAAGfs	p.R181fs		NM_003198	NP_003189	Q14241	ELOA1_HUMAN	elongin A	181_182					positive regulation of viral transcription|regulation of transcription from RNA polymerase II promoter|transcription elongation from RNA polymerase II promoter|viral reproduction	integral to membrane	DNA binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.42e-24)|Colorectal(126;5.5e-08)|COAD - Colon adenocarcinoma(152;3.09e-06)|GBM - Glioblastoma multiforme(114;4.74e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000973)|KIRC - Kidney renal clear cell carcinoma(1967;0.00334)|STAD - Stomach adenocarcinoma(196;0.0127)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0853)|LUSC - Lung squamous cell carcinoma(448;0.187)		GAGATGAGAGAAAGAGGTGTCA	0.480													50	121	---	---	---	---					
GBP2	2634	broad.mit.edu	37	1	89578261	89578263	+	In_Frame_Del	DEL	TCT	-	-	rs142287187		TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:89578261_89578263delTCT	uc001dmz.1	-	8	1525_1527	c.1254_1256delAGA	c.(1252-1257)GAAGAT>GAT	p.E418del	GBP2_uc001dmy.1_RNA	NM_004120	NP_004111	P32456	GBP2_HUMAN	guanylate binding protein 2,	418					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)	1		Lung NSC(277;0.0908)		all cancers(265;0.0151)|Epithelial(280;0.0284)		CTGCTTGACATCTTCTTCTAAAG	0.438													40	192	---	---	---	---					
GBP7	388646	broad.mit.edu	37	1	89615082	89615083	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr1:89615082_89615083delGT	uc001dna.2	-	7	1183_1184	c.1044_1045delAC	c.(1042-1047)ACACTCfs	p.T348fs	GBP2_uc001dmy.1_RNA	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	348_349						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		AGCTCCTGGAGTGTGTCTGTGG	0.535													11	147	---	---	---	---					
ZDHHC5	25921	broad.mit.edu	37	11	57466855	57466857	+	In_Frame_Del	DEL	AGA	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr11:57466855_57466857delAGA	uc001nkx.1	+	11	3203_3205	c.1947_1949delAGA	c.(1945-1950)ACAGAA>ACA	p.E651del	ZDHHC5_uc001nky.1_In_Frame_Del_p.E598del|ZDHHC5_uc001nkz.1_In_Frame_Del_p.E465del	NM_015457	NP_056272	Q9C0B5	ZDHC5_HUMAN	zinc finger, DHHC domain containing 5	651						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)	1						TCTCTGAGACAGAAGAAGTGGCC	0.512													11	107	---	---	---	---					
CALCOCO1	57658	broad.mit.edu	37	12	54110173	54110175	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr12:54110173_54110175delCTC	uc001sef.2	-	8	1018_1020	c.874_876delGAG	c.(874-876)GAGdel	p.E292del	CALCOCO1_uc001see.2_5'Flank|CALCOCO1_uc010som.1_Intron|CALCOCO1_uc010son.1_In_Frame_Del_p.E169del|CALCOCO1_uc001seh.2_In_Frame_Del_p.E292del|CALCOCO1_uc009znd.2_In_Frame_Del_p.E292del|CALCOCO1_uc001seg.2_Intron|CALCOCO1_uc010soo.1_In_Frame_Del_p.E285del	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	292	Potential.				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						AGTGATGGTTCTCCTGTTGTGCC	0.542													40	50	---	---	---	---					
SMARCA4	6597	broad.mit.edu	37	19	11106926	11106928	+	In_Frame_Del	DEL	AGA	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr19:11106926_11106928delAGA	uc002mqf.3	+	10	1915_1917	c.1631_1633delAGA	c.(1630-1635)CAGAAG>CAG	p.K546del	SMARCA4_uc010dxp.2_In_Frame_Del_p.K546del|SMARCA4_uc010dxo.2_In_Frame_Del_p.K546del|SMARCA4_uc002mqg.1_In_Frame_Del_p.K546del|SMARCA4_uc010dxq.2_In_Frame_Del_p.K546del|SMARCA4_uc010dxr.2_In_Frame_Del_p.K546del|SMARCA4_uc002mqj.3_In_Frame_Del_p.K546del|SMARCA4_uc010dxs.2_In_Frame_Del_p.K546del|SMARCA4_uc002mqe.2_In_Frame_Del_p.K546del	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	546					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				CTCATCGACCAGAAGAAGGACAA	0.576			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				42	160	---	---	---	---					
UXS1	80146	broad.mit.edu	37	2	106710502	106710505	+	Frame_Shift_Del	DEL	CTTT	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr2:106710502_106710505delCTTT	uc002tdm.2	-	15	1338_1341	c.1240_1243delAAAG	c.(1240-1245)AAAGGAfs	p.K414fs	UXS1_uc002tdk.2_Frame_Shift_Del_p.K212fs|UXS1_uc002tdl.2_Frame_Shift_Del_p.K246fs|UXS1_uc002tdn.2_Frame_Shift_Del_p.K419fs|UXS1_uc002tdo.2_Frame_Shift_Del_p.K357fs	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	414_415	Lumenal (Potential).				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						CGAGTCCGTCCTTTCTTTATTCTG	0.412													35	32	---	---	---	---					
SEC22A	26984	broad.mit.edu	37	3	122944084	122944085	+	Frame_Shift_Ins	INS	-	CCGATGGAGT	CCGATGGAGT			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr3:122944084_122944085insCCGATGGAGT	uc003ege.2	+	4	560_561	c.481_482insCCGATGGAGT	c.(481-483)GCCfs	p.A161fs	SEC22A_uc003egf.2_Frame_Shift_Ins_p.A161fs	NM_012430	NP_036562	Q96IW7	SC22A_HUMAN	SEC22 vesicle trafficking protein homolog A	161	Cytoplasmic (Potential).				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|integral to membrane	transporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0548)		ACTGGGGTCAGCCAATGGAGTC	0.396													18	170	---	---	---	---					
ZXDC	79364	broad.mit.edu	37	3	126191130	126191133	+	Frame_Shift_Del	DEL	ATAA	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr3:126191130_126191133delATAA	uc003eiv.2	-	2	977_980	c.923_926delTTAT	c.(922-927)TTTATCfs	p.F308fs	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Frame_Shift_Del_p.F308fs	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	308_309	C2H2-type 5.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		ACTCACTGTGATAAATGTCTTCTC	0.475													44	77	---	---	---	---					
YTHDC1	91746	broad.mit.edu	37	4	69203308	69203310	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr4:69203308_69203310delAGG	uc003hdx.2	-	3	792_794	c.439_441delCCT	c.(439-441)CCTdel	p.P147del	YTHDC1_uc003hdy.2_In_Frame_Del_p.P147del	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	147										upper_aerodigestive_tract(1)|ovary(1)	2						CATCTGGCGTAGGAGATTTGGCC	0.404													21	37	---	---	---	---					
ANK2	287	broad.mit.edu	37	4	114277079	114277080	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr4:114277079_114277080delCT	uc003ibe.3	+	38	7405_7406	c.7305_7306delCT	c.(7303-7308)GACTCTfs	p.D2435fs	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Frame_Shift_Del_p.D2450fs	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2402_2403					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GCCACAAAGACTCTCTGGAAGC	0.510													45	66	---	---	---	---					
RELL2	285613	broad.mit.edu	37	5	141018562	141018564	+	In_Frame_Del	DEL	AGG	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr5:141018562_141018564delAGG	uc003lli.2	+	4	1139_1141	c.291_293delAGG	c.(289-294)GAAGGA>GAA	p.G98del	HDAC3_uc003llf.2_5'Flank|HDAC3_uc010jgd.1_5'Flank|HDAC3_uc010jge.1_5'Flank|RELL2_uc003llh.2_In_Frame_Del_p.G98del|RELL2_uc003llg.2_In_Frame_Del_p.G32del|RELL2_uc010jgf.2_In_Frame_Del_p.G32del	NM_001130029	NP_001123501	Q8NC24	RELL2_HUMAN	RELT-like 2	98						integral to membrane|plasma membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGACAGTGAAGGAGAAGGGACA	0.557													7	31	---	---	---	---					
GEMIN5	25929	broad.mit.edu	37	5	154315435	154315438	+	Frame_Shift_Del	DEL	AAGT	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr5:154315435_154315438delAAGT	uc003lvx.3	-	3	555_558	c.472_475delACTT	c.(472-477)ACTTGTfs	p.T158fs	GEMIN5_uc011ddk.1_Frame_Shift_Del_p.T158fs	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	158_159	WD 3.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGAGGTGAACAAGTAAGACAGAAA	0.353													7	90	---	---	---	---					
PABPC1	26986	broad.mit.edu	37	8	101724994	101724995	+	Frame_Shift_Ins	INS	-	A	A	rs140822921	by1000genomes	TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr8:101724994_101724995insA	uc003yjs.1	-	6	1265_1266	c.761_762insT	c.(760-762)AAGfs	p.K254fs	PABPC1_uc011lhc.1_Frame_Shift_Ins_p.K222fs|PABPC1_uc011lhd.1_Frame_Shift_Ins_p.K209fs|PABPC1_uc003yjt.1_Frame_Shift_Ins_p.K251fs|PABPC1_uc003yju.2_RNA	NM_002568	NP_002559	P11940	PABP1_HUMAN	poly(A) binding protein, cytoplasmic 1	254	CSDE1-binding.|RRM 3.				mRNA polyadenylation|mRNA stabilization|negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|translation	catalytic step 2 spliceosome|cytosol	nucleotide binding|poly(A) RNA binding|protein C-terminus binding|translation activator activity				0	all_cancers(14;6.8e-05)|all_epithelial(15;3.16e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;6.37e-11)|all cancers(13;1.11e-08)|OV - Ovarian serous cystadenocarcinoma(57;3.91e-05)|STAD - Stomach adenocarcinoma(118;0.206)			CATTGAGCTCCTTTCCGTTCAT	0.371													8	85	---	---	---	---					
OR1J4	26219	broad.mit.edu	37	9	125281597	125281599	+	In_Frame_Del	DEL	TTC	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chr9:125281597_125281599delTTC	uc011lyw.1	+	1	178_180	c.178_180delTTC	c.(178-180)TTCdel	p.F62del		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CACCCCCATGTTCTTCTTCCTCA	0.498													133	175	---	---	---	---					
ATRX	546	broad.mit.edu	37	X	76918950	76918951	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-HT-7855-01A-11D-2395-08	TCGA-HT-7855-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	1bc9fea0-cb11-47c4-bfe6-a813ee66a3eb	0ba77c15-05f7-4769-8070-6a2a63a9f466	g.chrX:76918950_76918951delCA	uc004ecp.3	-	12	4272_4273	c.4040_4041delTG	c.(4039-4041)GTGfs	p.V1347fs	ATRX_uc004ecq.3_Frame_Shift_Del_p.V1309fs|ATRX_uc004eco.3_Frame_Shift_Del_p.V1132fs|ATRX_uc004ecr.2_Frame_Shift_Del_p.V1279fs	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	1347					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CTCCGTCACTCACAGTCAATTT	0.361			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						27	5	---	---	---	---					
