Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF10	100132406	broad.mit.edu	37	1	145360584	145360584	+	Missense_Mutation	SNP	G	A	A	rs78186669		TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr1:145360584G>A	uc001end.3	+	76	9469	c.9434G>A	c.(9433-9435)GGG>GAG	p.G3145E	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Missense_Mutation_p.G443E	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3070											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GATGAGAAAGGGCCTGAAGTC	0.483													4	10					0	0	0.021553	0	0
ARHGDIB	397	broad.mit.edu	37	12	15095522	15095522	+	Silent	SNP	G	A	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr12:15095522G>A	uc001rcq.1	-	6	644	c.540C>T	c.(538-540)GAC>GAT	p.D180D	ARHGDIB_uc001rcp.1_RNA	NM_001175	NP_001166	P52566	GDIR2_HUMAN	Rho GDP dissociation inhibitor (GDI) beta	180					actin cytoskeleton organization|cellular component movement|immune response|multicellular organismal development|negative regulation of cell adhesion|regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytoplasmic membrane-bounded vesicle|cytoskeleton|cytosol	GTPase activator activity|Rho GDP-dissociation inhibitor activity				0						GCTTGTCATCGTCGGTGAAGA	0.567													63	142					0	0	0.014410	0	0
MYO1A	4640	broad.mit.edu	37	12	57423554	57423554	+	Silent	SNP	G	A	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr12:57423554G>A	uc001smw.3	-	25	2937	c.2694C>T	c.(2692-2694)GCC>GCT	p.A898A	MYO1A_uc010sqz.1_Silent_p.A736A|MYO1A_uc009zpd.2_Silent_p.A898A	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	898					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CCTTCTTCACGGCCTCTGCCA	0.587													14	180					0	0	0.024245	0	0
FARP1	10160	broad.mit.edu	37	13	99076871	99076871	+	Silent	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr13:99076871C>T	uc001vnj.2	+	17	2208	c.1872C>T	c.(1870-1872)GGC>GGT	p.G624G	FARP1_uc001vnh.2_Silent_p.G624G	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	624	DH.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AAAGAATCGGCGATGTCATGC	0.502													8	34					0	0	0.003080	0	0
ADAM6	8755	broad.mit.edu	37	14	107281194	107281194	+	RNA	SNP	T	G	G	rs4774030	by1000genomes	TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr14:107281194T>G	uc010tyt.1	-	3		c.195A>C								Parts of antibodies, mostly variable regions.												0						AGACAGCGCATGTGAGGGACA	0.592													3	31					0	0	0.004672	0	0
PLCB2	5330	broad.mit.edu	37	15	40590542	40590542	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr15:40590542C>T	uc001zld.2	-	11	1338	c.1037G>A	c.(1036-1038)CGC>CAC	p.R346H	PLCB2_uc010bbo.2_Missense_Mutation_p.R346H|PLCB2_uc010ucm.1_Missense_Mutation_p.R346H	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	346	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CAGCACCTGGCGGTACATCTC	0.627													40	59					0	0	0.009718	0	0
SPTBN5	51332	broad.mit.edu	37	15	42178327	42178327	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr15:42178327C>T	uc001zos.2	-	7	1354	c.1021G>A	c.(1021-1023)GCA>ACA	p.A341T		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	376	Spectrin 1.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCTTGGAGTGCTGTCTGTAGC	0.667													13	29					0	0	0.016723	0	0
PER1	5187	broad.mit.edu	37	17	8047060	8047060	+	Missense_Mutation	SNP	T	G	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr17:8047060T>G	uc002gkd.2	-	19	2834	c.2596A>C	c.(2596-2598)ACC>CCC	p.T866P	PER1_uc010cns.2_5'Flank|PER1_uc010vuq.1_Intron	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	866	Pro-rich.				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						GGCCAGGGGGTGGAGGGTGGC	0.667			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					6	21					0	0	0.004482	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904139	21904139	+	RNA	SNP	T	G	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr17:21904139T>G	uc002gza.2	+	1		c.78T>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ccgagcaggatgaggaaacca	0													7	87					0	0	0.001984	0	0
VPS25	84313	broad.mit.edu	37	17	40926665	40926665	+	Silent	SNP	A	G	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr17:40926665A>G	uc002ibi.2	+	3	241	c.201A>G	c.(199-201)CGA>CGG	p.R67R		NM_032353	NP_115729	Q9BRG1	VPS25_HUMAN	vacuolar protein sorting 25	67					cellular membrane organization|endosome transport|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endosome membrane|nucleoplasm					0		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		TTAAACCAGGAAAGCTTCCTG	0.453													7	22					0	0	0.003080	0	0
CIC	23152	broad.mit.edu	37	19	42791715	42791715	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr19:42791715C>T	uc002otf.1	+	5	641	c.601C>T	c.(601-603)CGG>TGG	p.R201W		NM_015125	NP_055940	Q96RK0	CIC_HUMAN	capicua homolog	201	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(4)|breast(4)|lung(1)|central_nervous_system(1)|skin(1)	11		Prostate(69;0.00682)				GGACCACATCCGGCGGCCCAT	0.622			T	DUX4	soft tissue sarcoma								18	77					0	0	0.006122	0	0
NCRNA00164	554226	broad.mit.edu	37	2	132911180	132911180	+	RNA	SNP	A	G	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr2:132911180A>G	uc002tti.3	-	5		c.949T>C			NCRNA00164_uc002ttj.3_Intron	NR_027019				Homo sapiens non-protein coding RNA 164, mRNA (cDNA clone IMAGE:5169389), with apparent retained intron.												0						TTCCACATGTAGCTTCAGCAC	0.383													4	16					0	0	0.009096	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393			Mis		gliobastoma 								21	24					0	0	0.014323	0	0
TPTE	7179	broad.mit.edu	37	21	10906911	10906911	+	Silent	SNP	G	A	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr21:10906911G>A	uc002yip.1	-	24	2018	c.1650C>T	c.(1648-1650)TCC>TCT	p.S550S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.S532S|TPTE_uc002yir.1_Silent_p.S512S|TPTE_uc010gkv.1_Silent_p.S412S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	550					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATACTTAATCGGATCCAGCTA	0.398													5	69					0	0	0.014758	0	0
NOL12	79159	broad.mit.edu	37	22	38087302	38087302	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr22:38087302C>T	uc003atp.2	+	6	657	c.601C>T	c.(601-603)CGC>TGC	p.R201C	NOL12_uc011anm.1_3'UTR|NOL12_uc003ato.1_RNA|TRIOBP_uc003atq.1_5'UTR	NM_024313	NP_077289	Q9UGY1	NOL12_HUMAN	nucleolar protein 12	201						nucleolus	rRNA binding				0	Melanoma(58;0.0574)					CAAGGCCCAGCGCCGCCGTCT	0.632													23	41					0	0	0.014323	0	0
UGT2B10	7365	broad.mit.edu	37	4	69879783	69879783	+	Silent	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr4:69879783C>T	uc011cao.1	-	6	982	c.846G>A	c.(844-846)AGG>AGA	p.R282R	UGT2B10_uc011can.1_Silent_p.R198R			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	319					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TTACATTGGCCCTTTCTGCTG	0.438													25	91					0	0	0.027356	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715474	99715474	+	RNA	SNP	T	G	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr5:99715474T>G	uc011cuw.1	-	4		c.436A>C				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						GGGCAGAAGGTGTTGGCGCCA	0.577													6	16					0	0	0.024245	0	0
AARS2	57505	broad.mit.edu	37	6	44270856	44270856	+	Silent	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr6:44270856C>T	uc010jza.1	-	16	2205	c.2202G>A	c.(2200-2202)TTG>TTA	p.L734L	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	734					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	AGGCTGGGTCCAATGCATGGG	0.627													6	83					0	0	0.001984	0	0
MGC87042	256227	broad.mit.edu	37	7	22532260	22532260	+	Missense_Mutation	SNP	A	G	G	rs62447564	by1000genomes	TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr7:22532260A>G	uc003svh.2	-	4	726	c.629T>C	c.(628-630)ATA>ACA	p.I210T	MGC87042_uc010kum.1_Missense_Mutation_p.I229T			Q6NZ63	STEAL_HUMAN	SubName: Full=cDNA FLJ60218, highly similar to Six transmembrane epithelial antigen ofprostate 1;	210	Helical; (Potential).					integral to membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0						CAGAGCCAGTATTGCCAGTCC	0.393													4	60					0	0	0.014758	0	0
NUDT11	55190	broad.mit.edu	37	X	51238885	51238885	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chrX:51238885C>T	uc010njt.2	-	1	575	c.412G>A	c.(412-414)GAA>AAA	p.E138K		NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11	138	Nudix hydrolase.					cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TCCAGATATTCGGCGTGCACG	0.542										HNSCC(48;0.14)			5	86					0	0	0.003080	0	0
ARHGEF9	23229	broad.mit.edu	37	X	62893977	62893977	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chrX:62893977G>A	uc004dvl.2	-	6	1704	c.865C>T	c.(865-867)CGA>TGA	p.R289*	ARHGEF9_uc004dvj.1_Nonsense_Mutation_p.R178*|ARHGEF9_uc004dvk.1_Nonsense_Mutation_p.R151*|ARHGEF9_uc011mos.1_Nonsense_Mutation_p.R268*|ARHGEF9_uc004dvm.1_Nonsense_Mutation_p.R268*|ARHGEF9_uc011mot.1_Nonsense_Mutation_p.R236*|ARHGEF9_uc004dvn.2_Nonsense_Mutation_p.R296*	NM_015185	NP_056000	O43307	ARHG9_HUMAN	Cdc42 guanine exchange factor 9	289					apoptosis|induction of apoptosis by extracellular signals|ion transmembrane transport|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(5)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	8						TCTAAACGTCGCTTGCGTTCG	0.458													4	63					0	0	0.009096	0	0
RAB33A	9363	broad.mit.edu	37	X	129306042	129306042	+	Silent	SNP	G	A	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chrX:129306042G>A	uc004evl.2	+	1	270	c.6G>A	c.(4-6)GCG>GCA	p.A2A	RAB33A_uc010nre.2_RNA	NM_004794	NP_004785	Q14088	RB33A_HUMAN	Ras-related protein Rab-33A	2					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding				0						GGGAGATGGCGCAGCCCATCC	0.677													16	32					0	0	0.024245	0	0
MAMLD1	10046	broad.mit.edu	37	X	149638921	149638921	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chrX:149638921C>G	uc004fee.1	+	3	1152	c.1076C>G	c.(1075-1077)CCA>CGA	p.P359R	MAMLD1_uc011mxt.1_Missense_Mutation_p.P321R|MAMLD1_uc011mxu.1_Missense_Mutation_p.P334R|MAMLD1_uc011mxv.1_Missense_Mutation_p.P334R|MAMLD1_uc011mxw.1_Missense_Mutation_p.P286R	NM_005491	NP_005482	Q13495	MAMD1_HUMAN	mastermind-like domain containing 1	359	Poly-Pro.				male gonad development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(192;6.56e-05)					ccaccacccccaTTCAGCCCC	0.448													45	166					0	0	0.011902	0	0
G6PD	2539	broad.mit.edu	37	X	153762634	153762634	+	Missense_Mutation	SNP	G	A	A	rs5030868	byFrequency	TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chrX:153762634G>A	uc004fly.1	-	6	676	c.563C>T	c.(562-564)TCC>TTC	p.S188F	G6PD_uc004flx.1_Missense_Mutation_p.S218F	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	188					cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAACAGGGAGGAGATGTGGTT	0.632													43	106					0	0	0.009718	0	0
IDE	3416	broad.mit.edu	37	10	94333744	94333744	+	Frame_Shift_Del	DEL	G	-	-			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr10:94333744delG	uc001kia.2	-	1	109	c.33delC	c.(31-33)CCCfs	p.P11fs		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	11					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGGGCAGTGCGGGGTGCAGAA	0.716													2	4	---	---	---	---					
SNRNP200	23020	broad.mit.edu	37	2	96959095	96959116	+	Frame_Shift_Del	DEL	TAGAAAGGTGGCTACATCTTCA	-	-			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chr2:96959095_96959116delTAGAAAGGTGGCTACATCTTCA	uc002svu.2	-	15	2060_2081	c.1974_1995delTGAAGATGTAGCCACCTTTCTA	c.(1972-1995)TATGAAGATGTAGCCACCTTTCTAfs	p.Y658fs		NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	658_665	Helicase ATP-binding 1.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GGTCAACACGTAGAAAGGTGGCTACATCTTCATAGTTGGGTA	0.495													17	114	---	---	---	---					
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	-	-			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	g.chrX:150817142_150817144delGCT	uc004fev.3	+	9	1017_1019	c.685_687delGCT	c.(685-687)GCTdel	p.A236del		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.355													8	172	---	---	---	---					
