Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TAS1R2	80834	broad.mit.edu	37	1	19181133	19181133	+	Silent	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:19181133G>A	uc001bba.1	-	3	832	c.831C>T	c.(829-831)CCC>CCT	p.P277P		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	277	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GGGTCAGGTCGGGCGAGAACA	0.632													6	45					0	0	0.001984	0	0
GLIS1	148979	broad.mit.edu	37	1	53995560	53995560	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:53995560C>T	uc001cvr.1	-	4	1428	c.861G>A	c.(859-861)ACG>ACA	p.T287T		NM_147193	NP_671726	Q8NBF1	GLIS1_HUMAN	GLIS family zinc finger 1	287					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			skin(1)	1						GCTTCTCGCCCGTGTGGCTCC	0.637													9	65					0	0	0.008291	0	0
SFRS11	9295	broad.mit.edu	37	1	70715634	70715634	+	Splice_Site	SNP	G	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:70715634G>C	uc001des.2	+	11	1147	c.1023_splice	c.e11-1	p.R341_splice	SFRS11_uc001det.2_Splice_Site_p.R341_splice|SFRS11_uc001deu.2_Missense_Mutation_p.R348T|SFRS11_uc001dev.2_Splice_Site_p.R151_splice|SFRS11_uc001dew.2_Splice_Site_p.R281_splice	NM_004768	NP_004759	Q05519	SRS11_HUMAN	splicing factor, arginine/serine-rich 11						mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	nucleotide binding|protein binding|RNA binding				0						TGTGATTCTAGAGAGAGACGA	0.388													5	37					0	0	0.014758	0	0
FMO3	2328	broad.mit.edu	37	1	171079965	171079965	+	Silent	SNP	C	G	G			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:171079965C>G	uc001ghi.2	+	6	765	c.654C>G	c.(652-654)TCC>TCG	p.S218S	FMO3_uc001ghh.2_Silent_p.S218S|FMO3_uc010pmb.1_Silent_p.S198S|FMO3_uc010pmc.1_Silent_p.S155S	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	218					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GAAGTGGCTCCTGGGTGATGA	0.383													10	96					0	0	0.024245	0	0
CFH	3075	broad.mit.edu	37	1	196716352	196716352	+	Missense_Mutation	SNP	A	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:196716352A>T	uc001gtj.3	+	22	3845	c.3605A>T	c.(3604-3606)AAA>ATA	p.K1202I		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1202	Sushi 20.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTTGTGTGTAAACGGGGATAT	0.383													15	85					0	0	0.028581	0	0
KDM5B	10765	broad.mit.edu	37	1	202702739	202702739	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:202702739C>T	uc001gyf.2	-	23	3815	c.3699G>A	c.(3697-3699)CTG>CTA	p.L1233L	KDM5B_uc009xag.2_Silent_p.L1269L|KDM5B_uc001gyg.1_Silent_p.L1075L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1233					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CGAGCAGGGGCAGAATTTTCT	0.532													14	68					0	0	0.024245	0	0
OR13G1	441933	broad.mit.edu	37	1	247835492	247835492	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr1:247835492C>T	uc001idi.1	-	1	852	c.852G>A	c.(850-852)CCG>CCA	p.P284P		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	284	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGTACACCATCGGGTTTAATG	0.438													16	81					0	0	0.004990	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118364948	118364948	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr10:118364948T>C	uc001lco.1	+	12	1241	c.1223T>C	c.(1222-1224)CTG>CCG	p.L408P	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.L408P	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	408	PLAT.				lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		GATGCAAAGCTGGATGTTGGA	0.413													6	89					0	0	0.003080	0	0
MKI67	4288	broad.mit.edu	37	10	129902797	129902797	+	Missense_Mutation	SNP	T	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr10:129902797T>C	uc001lke.2	-	13	7502	c.7307A>G	c.(7306-7308)GAC>GGC	p.D2436G	MKI67_uc001lkf.2_Missense_Mutation_p.D2076G|MKI67_uc009yav.1_Missense_Mutation_p.D2011G|MKI67_uc009yaw.1_Missense_Mutation_p.D1586G	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2436	16 X 122 AA approximate repeats.|12.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				GCCAACCAGGTCCTCTAGAGC	0.473													25	101					0	0	0.024334	0	0
CCKBR	887	broad.mit.edu	37	11	6292257	6292257	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr11:6292257C>T	uc001mcp.2	+	5	1021	c.828C>T	c.(826-828)AAC>AAT	p.N276N	CCKBR_uc001mcq.2_Silent_p.N204N|CCKBR_uc001mcr.2_Silent_p.N276N|CCKBR_uc001mcs.2_Silent_p.N345N|CCKBR_uc001mct.1_RNA	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	276	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TTCACCAGAACGGGCGTTGCC	0.662													13	110					0	0	0.016723	0	0
MADD	8567	broad.mit.edu	37	11	47304014	47304014	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr11:47304014C>T	uc001ner.1	+	9	1743	c.1552C>T	c.(1552-1554)CGG>TGG	p.R518W	MADD_uc001neq.2_Missense_Mutation_p.R518W|MADD_uc001nev.1_Missense_Mutation_p.R518W|MADD_uc001nes.1_Missense_Mutation_p.R518W|MADD_uc001net.1_Missense_Mutation_p.R518W|MADD_uc009yln.1_Missense_Mutation_p.R518W|MADD_uc001neu.1_Missense_Mutation_p.R518W|MADD_uc001nex.2_Missense_Mutation_p.R518W|MADD_uc001nez.2_Missense_Mutation_p.R518W|MADD_uc001new.2_Missense_Mutation_p.R518W	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	518	dDENN.				activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CCTCTTTCCTCGGCCTGTGGT	0.562													10	85					0	0	0.008291	0	0
OR4P4	81300	broad.mit.edu	37	11	55406511	55406511	+	Nonsense_Mutation	SNP	C	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr11:55406511C>A	uc010rij.1	+	1	678	c.678C>A	c.(676-678)TAC>TAA	p.Y226*		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	226	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TCAGAGCATACTCTGCAGAGA	0.388													6	62					3.59834e-05	3.6918e-05	0.021553	1	0
OR5L1	219437	broad.mit.edu	37	11	55579059	55579059	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr11:55579059G>T	uc001nhw.1	+	1	117	c.117G>T	c.(115-117)TTG>TTT	p.L39F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				GAGTCACGTTGTTAGCCAACC	0.507													33	209					4.74835e-14	5.06919e-14	0.010818	1	0
FAT3	120114	broad.mit.edu	37	11	92616485	92616485	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr11:92616485A>C	uc001pdj.3	+	23	12880	c.12863A>C	c.(12862-12864)AAC>ACC	p.N4288T	FAT3_uc001pdi.3_Missense_Mutation_p.N728T	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4288	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGGCCCCCAACCTCCCCGCC	0.657										TCGA Ovarian(4;0.039)			9	44					0	0	0.027356	0	0
DYNC2H1	79659	broad.mit.edu	37	11	102995846	102995846	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr11:102995846G>A	uc001pho.2	+	12	1823	c.1679G>A	c.(1678-1680)CGA>CAA	p.R560Q	DYNC2H1_uc001phn.1_Missense_Mutation_p.R560Q|DYNC2H1_uc009yxe.1_Missense_Mutation_p.R560Q	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	560	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GCTAGTAGTCGAATTATGGAA	0.318													7	14					0	0	0.003080	0	0
LOC642846	642846	broad.mit.edu	37	12	9463867	9463867	+	RNA	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr12:9463867G>A	uc010sgp.1	+	21		c.2496G>A			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						CTGCTGGGCCGTCTGGCTGCC	0.622													3	15					0	0	0.014758	0	0
BRF1	2972	broad.mit.edu	37	14	105688184	105688184	+	Silent	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr14:105688184G>A	uc001yqp.2	-	11	1479	c.1116C>T	c.(1114-1116)GCC>GCT	p.A372A	BRF1_uc010tyo.1_Silent_p.A257A|BRF1_uc010typ.1_Silent_p.A257A|BRF1_uc001yqk.2_5'UTR|BRF1_uc001yql.2_Silent_p.A168A|BRF1_uc001yqo.2_Silent_p.A134A|BRF1_uc010axg.1_Silent_p.A345A|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_5'UTR	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	372					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		GGCTGGCCGCGGCTTCCAGCT	0.637													4	21					0	0	0.009096	0	0
ADAM6	8755	broad.mit.edu	37	14	107048694	107048694	+	RNA	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr14:107048694G>A	uc010tyt.1	-	144		c.6896C>T								Parts of antibodies, mostly variable regions.												0						ATACACGGCCGTGTCCTCGGC	0.552													31	228					0	0	0.015359	0	0
C15orf2	23742	broad.mit.edu	37	15	24921092	24921093	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr15:24921092_24921093TC>AA	uc001ywo.2	+	1	552_553	c.78_79TC>AA	c.(76-81)GCTCCC>GCAACC	p.P27T		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	27					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCGCCCCCGCTCCCCTGTCCCG	0.703													5	19					0	0	0.004672	0	0
ATP10A	57194	broad.mit.edu	37	15	25959052	25959052	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr15:25959052A>G	uc010ayu.2	-	10	2219	c.2113T>C	c.(2113-2115)TAT>CAT	p.Y705H		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	705	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		CTGGCCGCATACACCAGTGCG	0.662													21	86					0	0	0.010504	0	0
HS3ST6	64711	broad.mit.edu	37	16	1962006	1962006	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr16:1962006C>T	uc002cnf.2	-	2	521	c.521G>A	c.(520-522)CGC>CAC	p.R174H		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	174											0						GGCCAGGGCGCGGAAGCTGGG	0.716													9	42					0	0	0.004482	0	0
ZZEF1	23140	broad.mit.edu	37	17	3937518	3937518	+	Silent	SNP	G	A	A	rs35511240	byFrequency	TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr17:3937518G>A	uc002fxe.2	-	40	6439	c.6375C>T	c.(6373-6375)AAC>AAT	p.N2125N	ZZEF1_uc002fxh.2_Silent_p.N439N|ZZEF1_uc002fxi.2_Silent_p.N360N|ZZEF1_uc002fxj.1_Silent_p.N738N	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2125							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GGTGGCCTGCGTTTGAGATGA	0.527													6	72					0	0	0.021553	0	0
LPO	4025	broad.mit.edu	37	17	56343663	56343663	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr17:56343663C>T	uc002ivt.2	+	11	1985	c.1669C>T	c.(1669-1671)CGT>TGT	p.R557C	LPO_uc010wns.1_Missense_Mutation_p.R498C|LPO_uc010dcp.2_Missense_Mutation_p.R474C|LPO_uc010dcq.2_Missense_Mutation_p.R228C|LPO_uc010dcr.2_Missense_Mutation_p.R120C	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	557					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CAACACACAGCGTTGCCGGGA	0.502													7	53					0	0	0.003080	0	0
DSC3	1825	broad.mit.edu	37	18	28581601	28581601	+	Missense_Mutation	SNP	G	A	A	rs114935867	byFrequency	TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr18:28581601G>A	uc002kwj.3	-	14	2373	c.2218C>T	c.(2218-2220)CCT>TCT	p.P740S	DSC3_uc002kwi.3_Missense_Mutation_p.P740S	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	740	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			TCGTCTCCAGGTGCTTCTGTG	0.308													5	65					0	0	0.014758	0	0
MAP1S	55201	broad.mit.edu	37	19	17845112	17845112	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr19:17845112G>C	uc002nhe.1	+	7	3064	c.3055G>C	c.(3055-3057)GCC>CCC	p.A1019P	MAP1S_uc010eba.1_Intron|MAP1S_uc002nhf.1_Missense_Mutation_p.A267P|MAP1S_uc010xpv.1_Missense_Mutation_p.A993P	NM_018174	NP_060644	Q66K74	MAP1S_HUMAN	BPY2 interacting protein 1	1019	Necessary for association with actin (By similarity).|Necessary for interaction with RASSF1 isoform A and isoform C.				apoptosis|brain development|microtubule bundle formation|mitochondrion transport along microtubule|neuron projection morphogenesis	cytosol|dendrite|microtubule|neuronal cell body|nucleus|perinuclear region of cytoplasm|spindle|synapse	actin filament binding|beta-tubulin binding|DNA binding|microtubule binding			central_nervous_system(1)	1						CGACTCGGTGGCCATGCATAC	0.657													6	56					0	0	0.001984	0	0
ZNF536	9745	broad.mit.edu	37	19	31040081	31040081	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr19:31040081C>T	uc002nsu.1	+	4	3693	c.3555C>T	c.(3553-3555)ACC>ACT	p.T1185T	ZNF536_uc010edd.1_Silent_p.T1185T	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1185					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ATGTTGAAACCGAACCGGAAA	0.572													8	70					0	0	0.004482	0	0
LILRB2	10288	broad.mit.edu	37	19	54783825	54783825	+	Missense_Mutation	SNP	C	T	T	rs141797988		TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr19:54783825C>T	uc002qfb.2	-	4	442	c.176G>A	c.(175-177)CGT>CAT	p.R59H	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Missense_Mutation_p.R59H|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.R59H|LILRB2_uc010yet.1_Intron|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	59	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCTATATAGACGGTACTCCTG	0.547													24	178					0	0	0.016522	0	0
LILRA3	11026	broad.mit.edu	37	19	54803127	54803127	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr19:54803127C>T	uc002qfd.2	-	4	615	c.550G>A	c.(550-552)GTG>ATG	p.V184M	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	184	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ACGGGGCCCACGGAGAAGATG	0.567													23	177					0	0	0.012319	0	0
RGPD3	653489	broad.mit.edu	37	2	107040564	107040564	+	Missense_Mutation	SNP	C	T	T	rs55993306	by1000genomes	TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr2:107040564C>T	uc010ywi.1	-	20	3916	c.3859G>A	c.(3859-3861)GAG>AAG	p.E1287K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1287					intracellular transport		binding			ovary(1)	1						GTTGTTGACTCATCAAAGTGG	0.408													12	249					0	0	0.010729	0	0
DPP10	57628	broad.mit.edu	37	2	116497433	116497433	+	Silent	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr2:116497433G>A	uc002tla.1	+	9	1273	c.816G>A	c.(814-816)GCG>GCA	p.A272A	DPP10_uc002tlb.1_Silent_p.A222A|DPP10_uc002tlc.1_Silent_p.A268A|DPP10_uc002tle.2_Silent_p.A276A|DPP10_uc002tlf.1_Silent_p.A265A	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	272	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TTACTGGAGCGTTGTATCCCA	0.458													19	119					0	0	0.010504	0	0
POTEE	445582	broad.mit.edu	37	2	131976382	131976382	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr2:131976382G>A	uc002tsn.2	+	1	459	c.407G>A	c.(406-408)CGT>CAT	p.R136H	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Translation_Start_Site|POTEE_uc002tsl.2_Translation_Start_Site	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	136							ATP binding				0						TACCACGTCCGTGGAGAAGAT	0.592													13	90					0	0	0.007413	0	0
CWC22	57703	broad.mit.edu	37	2	180810177	180810177	+	Silent	SNP	A	G	G			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr2:180810177A>G	uc010frh.1	-	20	2706	c.2406T>C	c.(2404-2406)AAT>AAC	p.N802N	CWC22_uc002uno.2_Silent_p.N324N|CWC22_uc002unp.2_Silent_p.N802N	NM_020943	NP_065994	Q9HCG8	CWC22_HUMAN	CWC22 spliceosome-associated protein homolog	802						catalytic step 2 spliceosome	protein binding|RNA binding				0						GGTCTCTGTCATTCGCAACTC	0.353													9	117					0	0	0.004482	0	0
FAM182B	728882	broad.mit.edu	37	20	25848685	25848685	+	RNA	SNP	G	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr20:25848685G>C	uc002wvd.1	-	1		c.102C>G								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggccctttgggactcctggca	0													3	1					0	0	0.009096	0	0
XKR7	343702	broad.mit.edu	37	20	30584347	30584347	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr20:30584347C>T	uc002wxe.2	+	3	1001	c.827C>T	c.(826-828)ACG>ATG	p.T276M		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	276	Helical; (Potential).					integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CTGGCCTGGACGCTGGCCTCC	0.701													6	35					0	0	0.001984	0	0
HCK	3055	broad.mit.edu	37	20	30667667	30667667	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr20:30667667C>T	uc002wxh.2	+	6	690	c.519C>T	c.(517-519)AGC>AGT	p.S173S	HCK_uc010gdy.2_Silent_p.S152S|HCK_uc002wxi.2_Silent_p.S151S	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	173	SH2.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TCCGGGATAGCGAGACCACTA	0.612													4	25					0	0	0.009096	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr20:33345744C>T	uc002xav.2	-	8	3378	c.807G>A	c.(805-807)CAG>CAA	p.Q269Q	NCOA6_uc002xaw.2_Silent_p.Q269Q|NCOA6_uc010gew.1_Silent_p.Q226Q	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	269	TBP/GTF2A-binding region.|NCOA1-binding region.|Gln-rich.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						gctgctgctgctgttgttgtt	0.313													4	40					0	0	0.014758	0	0
CEP97	79598	broad.mit.edu	37	3	101476897	101476897	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr3:101476897C>T	uc003dvk.1	+	9	1474	c.1447C>T	c.(1447-1449)CCT>TCT	p.P483S	CEP97_uc010hpm.1_Missense_Mutation_p.P449S|CEP97_uc011bhf.1_Missense_Mutation_p.P424S|CEP97_uc003dvl.1_Missense_Mutation_p.P179S|CEP97_uc003dvm.1_Missense_Mutation_p.P321S	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	483	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						TGGACTATTACCTTGTCCTGA	0.378													16	75					0	0	0.028581	0	0
PIK3CA	5290	broad.mit.edu	37	3	178922364	178922364	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr3:178922364G>A	uc003fjk.2	+	6	1290	c.1133G>A	c.(1132-1134)TGT>TAT	p.C378Y		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	378	C2 PI3K-type.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.C378R(3)|p.C378F(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AGAGTACCTTGTTCCAATCCC	0.308		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			4	49					0	0	0.014758	0	0
B3GNT5	84002	broad.mit.edu	37	3	182988131	182988131	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr3:182988131A>G	uc003flk.2	+	2	1075	c.545A>G	c.(544-546)TAT>TGT	p.Y182C	MCF2L2_uc003fli.1_Intron|MCF2L2_uc003flj.1_Intron|MCF2L2_uc011bqr.1_Intron|B3GNT5_uc003fll.2_Missense_Mutation_p.Y182C|B3GNT5_uc003flm.2_Missense_Mutation_p.Y182C	NM_032047	NP_114436	Q9BYG0	B3GN5_HUMAN	UDP-GlcNAc:betaGal	182	Lumenal (Potential).				central nervous system development|glycolipid biosynthetic process|protein glycosylation	Golgi membrane|integral to membrane	beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity|galactosyltransferase activity			ovary(1)	1	all_cancers(143;8.52e-13)|Ovarian(172;0.0355)		all cancers(12;4.52e-44)|Epithelial(37;8.82e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			GCAAATACCTATTGTCCACAT	0.333													19	82					0	0	0.006122	0	0
PDGFRA	5156	broad.mit.edu	37	4	55131161	55131161	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr4:55131161G>A	uc003han.3	+	5	1035	c.704G>A	c.(703-705)TGT>TAT	p.C235Y	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_3'UTR|PDGFRA_uc010igq.1_Missense_Mutation_p.C129Y|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	235	Ig-like C2-type 3.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.C235Y(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GTGGTCACCTGTGCTGTTTTT	0.378			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			510	129					0	0	0.014410	0	0
TET2	54790	broad.mit.edu	37	4	106157894	106157894	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr4:106157894A>G	uc003hxk.2	+	3	3181	c.2795A>G	c.(2794-2796)GAC>GGC	p.D932G	TET2_uc011cez.1_Missense_Mutation_p.D953G|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.D932G|TET2_uc003hxi.1_Missense_Mutation_p.D932G	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	932	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CCTGTGCCTGACCAGGGAGGA	0.453			Mis N|F		MDS								12	37					0	0	0.010729	0	0
SLC6A3	6531	broad.mit.edu	37	5	1406358	1406358	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr5:1406358C>T	uc003jck.2	-	12	1665	c.1544G>A	c.(1543-1545)CGG>CAG	p.R515Q		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	515					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	CAGGCTGGGCCGCTGCCCGGT	0.652													9	114					0	0	0.010729	0	0
SLC6A3	6531	broad.mit.edu	37	5	1406386	1406386	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr5:1406386C>T	uc003jck.2	-	12	1637	c.1516G>A	c.(1516-1518)GAC>AAC	p.D506N		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	506					cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	TGGATGTCGTCGCTGAACTGC	0.642													11	117					0	0	0.016723	0	0
CDC20B	166979	broad.mit.edu	37	5	54424345	54424345	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr5:54424345G>T	uc003jpo.1	-	7	973	c.798C>A	c.(796-798)AAC>AAA	p.N266K	CDC20B_uc003jpn.1_Missense_Mutation_p.N266K|CDC20B_uc010ivu.1_Missense_Mutation_p.N266K|CDC20B_uc010ivv.1_Missense_Mutation_p.N266K	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	266	WD 1.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			TTAAGTCTATGTTTTCAATCC	0.448													8	68					0.00448238	0.00453985	0.004482	1	0
GPR98	84059	broad.mit.edu	37	5	89979459	89979459	+	Silent	SNP	T	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr5:89979459T>C	uc003kju.2	+	28	5817	c.5721T>C	c.(5719-5721)TCT>TCC	p.S1907S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1907	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACATAGACTCTGATCCTGATG	0.403													3	25					0	0	0.004672	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101582955	101582955	+	Splice_Site	SNP	C	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr5:101582955C>A	uc003knm.2	-	10	2098	c.1811_splice	c.e10+1	p.R604_splice		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,						cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GTGCTACATACCTTAGGATAG	0.378													9	48					3.09899e-07	3.22131e-07	0.004482	1	0
C6orf10	10665	broad.mit.edu	37	6	32261388	32261388	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr6:32261388C>T	uc011dpy.1	-	12	1235	c.1062G>A	c.(1060-1062)ACG>ACA	p.T354T	C6orf10_uc011dpx.1_Silent_p.T136T	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	354						integral to membrane				skin(1)	1						ACCCACTCTTCGTTACTTGGG	0.468													20	124					0	0	0.012319	0	0
TEAD3	7005	broad.mit.edu	37	6	35445110	35445110	+	Silent	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr6:35445110C>T	uc003oku.3	-	8	806	c.570G>A	c.(568-570)CCG>CCA	p.P190P	TEAD3_uc003okt.2_Silent_p.P79P|TEAD3_uc010jvx.2_Silent_p.P130P	NM_003214	NP_003205	Q99594	TEAD3_HUMAN	TEA domain family member 3	190	Pro-rich.|Transcriptional activation (Potential).				female pregnancy|hippo signaling cascade		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCGGCAGGGGCGGCTGGATGG	0.627													3	20					0	0	0.004672	0	0
PRSS35	167681	broad.mit.edu	37	6	84233953	84233953	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr6:84233953C>T	uc003pjz.2	+	2	956	c.793C>T	c.(793-795)CGA>TGA	p.R265*	PRSS35_uc010kbm.2_Nonsense_Mutation_p.R265*	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	265	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GGGCTGGGCACGAGGAGGCAT	0.527													8	60					0	0	0.003080	0	0
SAMD3	154075	broad.mit.edu	37	6	130497110	130497110	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr6:130497110C>T	uc003qbv.2	-	9	1024	c.698G>A	c.(697-699)CGA>CAA	p.R233Q	SAMD3_uc003qbx.2_Missense_Mutation_p.R233Q|SAMD3_uc003qbw.2_Missense_Mutation_p.R233Q|SAMD3_uc010kfg.1_3'UTR	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	233										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TATGGGTCTTCGAACATATTT	0.343													9	43					0	0	0.006214	0	0
PDE7B	27115	broad.mit.edu	37	6	136494954	136494954	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr6:136494954A>G	uc003qgp.2	+	9	1034	c.731A>G	c.(730-732)AAT>AGT	p.N244S	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Missense_Mutation_p.N296S	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	244	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	GTGCTGGAGAATCATCACTGG	0.428													10	40					0	0	0.010729	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113517983	113517983	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr7:113517983G>A	uc010ljy.1	-	4	3195	c.3164C>T	c.(3163-3165)CCT>CTT	p.P1055L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1055					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTCCTCAACAGGAAGACTAGT	0.363													18	150					0	0	0.007413	0	0
ASZ1	136991	broad.mit.edu	37	7	117067417	117067417	+	Missense_Mutation	SNP	G	A	A	rs113501399		TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr7:117067417G>A	uc003vjb.2	-	1	161	c.98C>T	c.(97-99)ACG>ATG	p.T33M	ASZ1_uc011kno.1_Missense_Mutation_p.T33M|ASZ1_uc011knp.1_Translation_Start_Site	NM_130768	NP_570124	Q8WWH4	ASZ1_HUMAN	ankyrin repeat, SAM and basic leucine zipper	33					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|male meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(10;0.00156)|all_lung(10;0.00175)		STAD - Stomach adenocarcinoma(10;0.000512)			TACCTGAGACGTCCGGTCGAG	0.657													24	148					0	0	0.016522	0	0
JHDM1D	80853	broad.mit.edu	37	7	139810958	139810958	+	Missense_Mutation	SNP	A	C	C			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr7:139810958A>C	uc003vvm.2	-	11	1369	c.1365T>G	c.(1363-1365)ATT>ATG	p.I455M	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	455					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					CATTGTCTGGAATTTCAAAGG	0.294													6	35					0	0	0.001984	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919425	142919425	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr7:142919425G>A	uc011ksx.1	+	1	254	c.254G>A	c.(253-255)CGA>CAA	p.R85Q		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	85	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					CTGCTATTCCGAATTGTTTAT	0.433													12	113					0	0	0.013537	0	0
EFCAB1	79645	broad.mit.edu	37	8	49643961	49643961	+	Nonsense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr8:49643961G>A	uc003xqo.2	-	2	320	c.160C>T	c.(160-162)CGA>TGA	p.R54*	EFCAB1_uc003xqn.3_Intron|EFCAB1_uc011ldj.1_Intron|EFCAB1_uc010lxx.2_Intron|EFCAB1_uc011ldk.1_Intron	NM_024593	NP_078869	Q9HAE3	EFCB1_HUMAN	EF-hand calcium binding domain 1 isoform a	54							calcium ion binding				0		all_epithelial(80;0.0134)|Lung NSC(129;0.0207)|all_lung(136;0.0464)				AGGATGTTTCGAAATGCATTA	0.393													6	31					0	0	0.021553	0	0
ASS1	445	broad.mit.edu	37	9	133333962	133333962	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr9:133333962G>A	uc004bzm.2	+	5	705	c.349G>A	c.(349-351)GGC>AGC	p.G117S	ASS1_uc004bzn.2_Missense_Mutation_p.G117S|ASS1_uc010mza.2_Missense_Mutation_p.G193S|ASS1_uc004bzo.2_Missense_Mutation_p.G117S|ASS1_uc010mzb.2_Missense_Mutation_p.G155S|ASS1_uc004bzp.2_Missense_Mutation_p.G117S|ASS1_uc010mzc.2_Missense_Mutation_p.G117S	NM_000050	NP_000041	P00966	ASSY_HUMAN	argininosuccinate synthetase 1	117	ATP (By similarity).		G -> D (in CTLN1).|G -> S (in CTLN1).		arginine biosynthetic process|urea cycle	cytosol	argininosuccinate synthase activity|ATP binding|protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;0.000514)	Adenosine triphosphate(DB00171)|L-Arginine(DB00125)|L-Aspartic Acid(DB00128)|L-Citrulline(DB00155)	TGTGTCCCACGGCGCCACAGG	0.657													5	22					0	0	0.014758	0	0
SURF2	6835	broad.mit.edu	37	9	136227174	136227174	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr9:136227174C>T	uc004cdi.2	+	5	599	c.551C>T	c.(550-552)ACG>ATG	p.T184M		NM_017503	NP_059973	Q15527	SURF2_HUMAN	surfeit 2	184							protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.87e-07)|Epithelial(140;4.02e-06)|all cancers(34;3.71e-05)		CTTGGAAGCACGGAGGATGGG	0.527													4	49					0	0	0.009096	0	0
AKAP4	8852	broad.mit.edu	37	X	49958224	49958224	+	Silent	SNP	G	A	A	rs140947270		TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chrX:49958224G>A	uc004dow.1	-	5	1264	c.1140C>T	c.(1138-1140)TCC>TCT	p.S380S	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Silent_p.S202S|AKAP4_uc004dou.1_Silent_p.S371S	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	380					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					CAATCAAATCGGACACAATCT	0.463													7	20					0	0	0.001984	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133911	91133911	+	Missense_Mutation	SNP	C	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chrX:91133911C>A	uc004efk.1	+	2	3517	c.2672C>A	c.(2671-2673)ACT>AAT	p.T891N	PCDH11X_uc004efl.1_Missense_Mutation_p.T891N|PCDH11X_uc004efo.1_Missense_Mutation_p.T891N|PCDH11X_uc010nmv.1_Missense_Mutation_p.T891N|PCDH11X_uc004efm.1_Missense_Mutation_p.T891N|PCDH11X_uc004efn.1_Missense_Mutation_p.T891N|PCDH11X_uc004efh.1_Missense_Mutation_p.T891N|PCDH11X_uc004efj.1_Missense_Mutation_p.T891N	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	891	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ATTGAAGAAACTAAGGCAGAT	0.338													15	44					4.29497e-23	4.64798e-23	0.024245	1	0
GPR112	139378	broad.mit.edu	37	X	135429578	135429578	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chrX:135429578G>A	uc004ezu.1	+	6	4004	c.3713G>A	c.(3712-3714)CGT>CAT	p.R1238H	GPR112_uc010nsb.1_Missense_Mutation_p.R1033H|GPR112_uc010nsc.1_Missense_Mutation_p.R1005H	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1238	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GCCACATATCGTGTACACACA	0.458													32	55					0	0	0.008361	0	0
NAV3	89795	broad.mit.edu	37	12	78401085	78401105	+	In_Frame_Del	DEL	CCAAGCTTCTCCTTCTGGTTC	-	-			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr12:78401085_78401105delCCAAGCTTCTCCTTCTGGTTC	uc001syp.2	+	8	1940_1960	c.1767_1787delCCAAGCTTCTCCTTCTGGTTC	c.(1765-1788)GGCCAAGCTTCTCCTTCTGGTTCC>GGC	p.QASPSGS590del	NAV3_uc001syo.2_In_Frame_Del_p.QASPSGS590del	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	590_596						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GGGAAGCTGGCCAAGCTTCTCCTTCTGGTTCCTGTACCATG	0.534										HNSCC(70;0.22)			7	119	---	---	---	---					
FBXW10	10517	broad.mit.edu	37	17	18675863	18675866	+	Frame_Shift_Del	DEL	TCTC	-	-			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr17:18675863_18675866delTCTC	uc002guk.2	+	12	2377_2380	c.2145_2148delTCTC	c.(2143-2148)ATTCTCfs	p.I715fs	FBXW10_uc002guj.2_Frame_Shift_Del_p.I715fs|FBXW10_uc002gul.2_Frame_Shift_Del_p.I744fs|FBXW10_uc010cqh.1_Frame_Shift_Del_p.I662fs	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	715_716	Potential.									ovary(1)	1						TCATGGAAATTCTCTCTAAGTGTA	0.333													28	170	---	---	---	---					
EVPL	2125	broad.mit.edu	37	17	74003773	74003775	+	In_Frame_Del	DEL	TTG	-	-			TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr17:74003773_74003775delTTG	uc002jqi.2	-	22	5739_5741	c.5511_5513delCAA	c.(5509-5514)AACAAG>AAG	p.N1837del	EVPL_uc010wss.1_In_Frame_Del_p.N1859del|EVPL_uc010wst.1_In_Frame_Del_p.N1307del	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1837	Globular 2.|Plectin 3.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GATGCTGCACTTGTTGTCTGTGG	0.611													29	215	---	---	---	---					
DPY19L2P4	442523	broad.mit.edu	37	7	89748927	89748928	+	RNA	INS	-	C	C	rs148487888	by1000genomes	TCGA-HT-7882-01A-11D-2395-08	TCGA-HT-7882-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	4addcc44-a8dd-453c-b647-71d8683f0c32	f15ab5d5-4fc4-467e-b1e6-b4ed73459895	g.chr7:89748927_89748928insC	uc003ujw.1	+	1		c.214_215insC				NR_003551				Homo sapiens dpy-19-like 2 pseudogene 4 (C. elegans), mRNA (cDNA clone IMAGE:5295327).												0						GGTGCGGGCCTCCCCCTTCCCC	0.639													3	4	---	---	---	---					
