Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974745	16974745	+	RNA	SNP	G	A	A	rs28526603	by1000genomes	TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:16974745G>A	uc010och.1	+	7		c.1205G>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTGGAACCGGAGGGCCGGGG	0.711000													4	30					0	0	1	0	0
C1orf38	9473	broad.mit.edu	37	1	28209255	28209255	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:28209255G>A	uc001bpc.3	+	4	1448	c.1420G>A	c.(1420-1422)GGC>AGC	p.G474S	C1orf38_uc001boz.2_Intron|C1orf38_uc001bpa.2_Intron|C1orf38_uc010ofn.1_Missense_Mutation_p.G278S|C1orf38_uc010ofo.1_Missense_Mutation_p.G345S	NM_001105556	NP_001099026	Q5TEJ8	THMS2_HUMAN	basement membrane-induced gene isoform 3	474	CABIT 2.				cell adhesion|inflammatory response					ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;2.52e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCTTCCTGGGCCTGCGGCT	0.602000													6	84					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111060317	111060317	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:111060317C>T	uc001dzt.1	-	1	1481	c.1093G>A	c.(1093-1095)GGG>AGG	p.G365R		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	365						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		AGTGTTTGCCCGAGGATCTGC	0.557000													73	59					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167096396	167096396	+	Silent	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:167096396G>A	uc001geb.1	+	5	2028	c.2028G>A	c.(2026-2028)ACG>ACA	p.T676T		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	676					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GGGACACGACGTCAGTACTGA	0.637000													5	45					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186276487	186276487	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:186276487C>T	uc001gru.3	+	7	1687	c.1636C>T	c.(1636-1638)CCC>TCC	p.P546S	PRG4_uc001grt.3_Missense_Mutation_p.P505S|PRG4_uc009wyl.2_Missense_Mutation_p.P453S|PRG4_uc009wym.2_Missense_Mutation_p.P412S|PRG4_uc010poo.1_Intron	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	546	59 X 8 AA repeats of K-X-P-X-P-T-T-X.|26; approximate.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CAAGTCTGCACCCACCACTCC	0.642000													42	81					0	0	1	0	0
OR13G1	441933	broad.mit.edu	37	1	247835570	247835570	+	Silent	SNP	G	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:247835570G>T	uc001idi.1	-	1	774	c.774C>A	c.(772-774)CGC>CGA	p.R258R		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	258	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TGGAAGCAGGGCGGATATAGG	0.463000													26	145					1.75199e-13	1.86687e-13	1	1	0
OGDHL	55753	broad.mit.edu	37	10	50953529	50953529	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr10:50953529C>T	uc001jie.2	-	12	1632	c.1490G>A	c.(1489-1491)CGG>CAG	p.R497Q	OGDHL_uc009xog.2_Missense_Mutation_p.R524Q|OGDHL_uc010qgt.1_Missense_Mutation_p.R440Q|OGDHL_uc010qgu.1_Missense_Mutation_p.R288Q|OGDHL_uc009xoh.2_Missense_Mutation_p.R288Q	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	497					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GTGGCCACGCCGGCGGTAACA	0.572000													26	73					0	0	1	0	0
ADK	132	broad.mit.edu	37	10	76360239	76360239	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr10:76360239A>G	uc001jwi.2	+	9	937	c.865A>G	c.(865-867)ATA>GTA	p.I289V	ADK_uc010qlb.1_Missense_Mutation_p.I232V|ADK_uc001jwj.2_Missense_Mutation_p.I272V|ADK_uc010qlc.1_Missense_Mutation_p.I254V|ADK_uc001jwl.2_Missense_Mutation_p.I59V	NM_006721	NP_006712	P55263	ADK_HUMAN	adenosine kinase isoform b	289				I -> N (in Ref. 1; AA sequence).	purine base metabolic process|purine ribonucleoside salvage	cytosol	adenosine kinase activity|ATP binding|metal ion binding|phosphotransferase activity, alcohol group as acceptor			ovary(1)|skin(1)	2	Prostate(51;0.0112)|Ovarian(15;0.148)				Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)|Pegademase bovine(DB00061)|Ribavirin(DB00811)	AGATGACACTATAATGGCTAC	0.348000													7	33					0	0	1	0	0
GPR120	338557	broad.mit.edu	37	10	95326548	95326548	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr10:95326548G>T	uc010qnt.1	+	1	127	c.71G>T	c.(70-72)CGC>CTC	p.R24L	GPR120_uc010qnu.1_Missense_Mutation_p.R24L	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	24	Extracellular (Potential).				negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				AACCGCACCCGCTTTCCCTTC	0.701000													6	33					3.59834e-05	3.59834e-05	1	1	0
LOXL4	84171	broad.mit.edu	37	10	100013489	100013489	+	Silent	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr10:100013489C>T	uc001kpa.1	-	11	1807	c.1656G>A	c.(1654-1656)CCG>CCA	p.P552P		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	552	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		GCTGGCTGAGCGGGCGGTCCT	0.627000													23	49					0	0	1	0	0
ADRBK1	156	broad.mit.edu	37	11	67046685	67046685	+	Missense_Mutation	SNP	C	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr11:67046685C>G	uc009yrn.1	+	3	471	c.205C>G	c.(205-207)CGA>GGA	p.R69G	ADRBK1_uc009yrm.1_Missense_Mutation_p.R69G	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	69	RGS.|N-terminal.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	CCTGCTCTTCCGAGACTTCTG	0.592000													6	71					0	0	1	0	0
TAPBPL	55080	broad.mit.edu	37	12	6567822	6567822	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr12:6567822G>A	uc001qog.3	+	5	1154	c.916G>A	c.(916-918)GTA>ATA	p.V306I	TAPBPL_uc001qoh.3_Missense_Mutation_p.V164I|TAPBPL_uc001qoi.1_RNA	NM_018009	NP_060479	Q9BX59	TPSNR_HUMAN	TAP binding protein-like precursor	306	Lumenal (Potential).|Ig-like C1-type.				antigen processing and presentation of endogenous peptide antigen via MHC class I	endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane					0						TTCCCCTAAAGTACGACTGAG	0.522000													11	145					0	0	1	0	0
ATF7IP	55729	broad.mit.edu	37	12	14634097	14634097	+	Silent	SNP	T	C	C			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr12:14634097T>C	uc001rbw.2	+	13	3416	c.3258T>C	c.(3256-3258)GTT>GTC	p.V1086V	ATF7IP_uc001rbv.1_Silent_p.V1085V|ATF7IP_uc001rbx.2_Silent_p.V1085V|ATF7IP_uc001rby.3_Silent_p.V1086V|ATF7IP_uc001rca.2_Silent_p.V1086V	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	1086					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						CTCCTGCTGTTCGGCAGGTCA	0.453000													7	132					0	0	1	0	0
DDIT3	1649	broad.mit.edu	37	12	57911132	57911132	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr12:57911132C>T	uc001soi.2	-	3	238	c.58G>A	c.(58-60)GCC>ACC	p.A20T	MARS_uc001sof.1_RNA|DDIT3_uc009zps.2_Missense_Mutation_p.A43T|DDIT3_uc009zpt.2_Missense_Mutation_p.A43T	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	20					cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						TCATACCAGGCTTCCAGCTCC	0.493000			T	FUS	liposarcoma								22	39					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28609684	28609684	+	Silent	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr13:28609684A>G	uc001urw.2	-	12	1627	c.1545T>C	c.(1543-1545)TGT>TGC	p.C515C	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.C515C	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	515	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AATTGTATGCACAGCACTTGA	0.438000			Mis|O		AML|ALL								18	153					0	0	1	0	0
FLT3	2322	broad.mit.edu	37	13	28611413	28611413	+	Silent	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr13:28611413A>G	uc001urw.2	-	10	1300	c.1218T>C	c.(1216-1218)TTT>TTC	p.F406F	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.F406F	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	406	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TATGATTGCAAAACTTGGATA	0.378000			Mis|O		AML|ALL								9	75					0	0	1	0	0
SDR39U1	56948	broad.mit.edu	37	14	24909494	24909494	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr14:24909494G>T	uc001wpm.2	-	6	709	c.677C>A	c.(676-678)GCT>GAT	p.A226D	KHNYN_uc010tpc.1_3'UTR|KHNYN_uc001wph.3_3'UTR|KHNYN_uc010alw.2_3'UTR|SDR39U1_uc001wpi.2_Missense_Mutation_p.A118D|SDR39U1_uc001wpj.2_Missense_Mutation_p.A144D|SDR39U1_uc001wpk.2_Missense_Mutation_p.A118D|SDR39U1_uc001wpl.2_Missense_Mutation_p.A171D|SDR39U1_uc001wpn.2_Missense_Mutation_p.A101D|uc001wpo.1_5'Flank	NM_020195	NP_064580	Q9NRG7	D39U1_HUMAN	short chain dehydrogenase/reductase family 39U,	252							binding			pancreas(1)	1						GGCAAACTCAGCATTAGTGGC	0.617000													21	37					4.96729e-08	5.0449e-08	1	1	0
DUOX2	50506	broad.mit.edu	37	15	45398797	45398797	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr15:45398797C>T	uc010bea.2	-	16	2077	c.1874G>A	c.(1873-1875)CGA>CAA	p.R625Q	DUOX2_uc001zun.2_Missense_Mutation_p.R625Q	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	625	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CTTGTGTTCTCGGCCCCGGAA	0.557000													31	165					0	0	1	0	0
HERC1	8925	broad.mit.edu	37	15	63972937	63972937	+	Silent	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr15:63972937C>T	uc002amp.2	-	35	6412	c.6264G>A	c.(6262-6264)ACG>ACA	p.T2088T		NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	2088	B30.2/SPRY.				protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						CTCCAACACACGTGCCTTCAT	0.373000													23	168					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72190411	72190411	+	Nonsense_Mutation	SNP	A	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr15:72190411A>T	uc002atl.3	-	25	4906	c.4433T>A	c.(4432-4434)TTG>TAG	p.L1478*	MYO9A_uc010biq.2_Nonsense_Mutation_p.L1098*|MYO9A_uc002atn.1_Nonsense_Mutation_p.L1459*|MYO9A_uc002atk.2_Nonsense_Mutation_p.L202*|MYO9A_uc002atm.1_Nonsense_Mutation_p.L202*	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1478	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CTCTGTATTCAAAGAAGGAAC	0.393000													10	114					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	82620400	82620400	+	RNA	SNP	T	C	C			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr15:82620400T>C	uc010bls.1	+	1		c.493T>C								Homo sapiens mRNA for FLJ00317 protein.																		GACCCAAGGGTCAGCCTGAGT	0.672000													6	19					0	0	1	0	0
PALB2	79728	broad.mit.edu	37	16	23646265	23646265	+	Silent	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr16:23646265A>G	uc002dlx.1	-	4	1802	c.1602T>C	c.(1600-1602)TCT>TCC	p.S534S		NM_024675	NP_078951	Q86YC2	PALB2_HUMAN	partner and localizer of BRCA2	534					double-strand break repair via homologous recombination	nucleoplasm	DNA binding|protein binding			lung(3)|breast(3)|ovary(2)|skin(1)|kidney(1)|pancreas(1)	11				GBM - Glioblastoma multiforme(48;0.0167)		TCGACAGGCTAGAAGTTGGCA	0.418000			F|N|Mis			Wilms tumor|medulloblastoma|AML ,breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia_type_N|Fanconi_Anemia|PALB2-associated_Familial_Breast_and_Pancreatic_Cancer|Pancreatic_Cancer_Familial_Clustering_of				5	127					0	0	1	0	0
GDPD1	284161	broad.mit.edu	37	17	57348316	57348316	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr17:57348316A>G	uc002ixk.1	+	8	867	c.730A>G	c.(730-732)ATG>GTG	p.M244V	GDPD1_uc002ixj.2_Missense_Mutation_p.M244V	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	244	GDPD.|Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					ACCACACACCATGTCCAGAAG	0.279000													34	76					0	0	1	0	0
SMARCD2	6603	broad.mit.edu	37	17	61911645	61911645	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr17:61911645C>T	uc010deb.1	-	8	1282	c.965G>A	c.(964-966)GGA>GAA	p.G322E	SMARCD2_uc010wpt.1_Missense_Mutation_p.G274E|SMARCD2_uc010dea.1_Missense_Mutation_p.G247E|SMARCD2_uc010dec.1_Missense_Mutation_p.G301E	NM_001098426	NP_001091896	Q92925	SMRD2_HUMAN	SWI/SNF-related matrix-associated	322	SWIB.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	SWI/SNF complex	protein binding|transcription coactivator activity				0						CGTGTGCACTCCCAGCAGCCT	0.567000											OREG0024642	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	23					0	0	1	0	0
ZNF271	10778	broad.mit.edu	37	18	32887852	32887852	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr18:32887852G>A	uc002kyq.3	+	3	2256	c.1264G>A	c.(1264-1266)GAT>AAT	p.D422N	ZNF271_uc002kyp.3_Missense_Mutation_p.D422N|ZNF271_uc002kyr.3_Missense_Mutation_p.D422N	NR_024565				SubName: Full=cDNA FLJ13394 fis, clone PLACE1001304, highly similar to Homo sapiens zinc finger protein 271 (ZNF271), mRNA;												0						GAATGCTGTTGATTATTGATG	0.318000													15	31					0	0	1	0	0
SMARCA4	6597	broad.mit.edu	37	19	11135091	11135091	+	Missense_Mutation	SNP	G	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr19:11135091G>T	uc002mqf.3	+	21	3342	c.3058G>T	c.(3058-3060)GAT>TAT	p.D1020Y	SMARCA4_uc010dxp.2_Missense_Mutation_p.D1020Y|SMARCA4_uc010dxo.2_Missense_Mutation_p.D1020Y|SMARCA4_uc002mqg.1_Missense_Mutation_p.D1020Y|SMARCA4_uc010dxq.2_Missense_Mutation_p.D1020Y|SMARCA4_uc010dxr.2_Missense_Mutation_p.D1020Y|SMARCA4_uc002mqj.3_Missense_Mutation_p.D1020Y|SMARCA4_uc010dxs.2_Missense_Mutation_p.D1020Y|SMARCA4_uc010dxt.1_Missense_Mutation_p.D240Y|SMARCA4_uc002mqh.3_Missense_Mutation_p.D143Y|SMARCA4_uc002mqi.1_Missense_Mutation_p.D223Y	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1020					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GCTGCTGACTGATGGCTCCGA	0.627000			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				18	33					9.16793e-09	9.45898e-09	1	1	0
ZNF490	57474	broad.mit.edu	37	19	12692359	12692359	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr19:12692359G>A	uc002mtz.2	-	5	659	c.530C>T	c.(529-531)TCT>TTT	p.S177F		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	177	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTGTGAGATCTCATGTG	0.443000													72	131					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14157294	14157294	+	Silent	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr19:14157294G>A	uc002mxx.2	+	8	1428	c.1005G>A	c.(1003-1005)ACG>ACA	p.T335T		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	335	Extracellular (Potential).|Fibronectin type-III 2.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						CTGGGAGCACGGAGCTACTGG	0.627000													14	203					0	0	1	0	0
ZNF681	148213	broad.mit.edu	37	19	23927189	23927189	+	Missense_Mutation	SNP	T	C	C	rs145416258	byFrequency	TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr19:23927189T>C	uc002nrk.3	-	4	1305	c.1163A>G	c.(1162-1164)CAT>CGT	p.H388R	ZNF681_uc002nrl.3_Missense_Mutation_p.H319R|ZNF681_uc002nrj.3_Missense_Mutation_p.H319R	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	388	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CTCTCCAGTATGAATTATCTT	0.398000													30	56					0	0	1	0	0
ZNF229	7772	broad.mit.edu	37	19	44932761	44932761	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr19:44932761C>T	uc002oze.1	-	6	2629	c.2195G>A	c.(2194-2196)AGA>AAA	p.R732K	ZNF229_uc010ejk.1_Missense_Mutation_p.R386K|ZNF229_uc010ejl.1_Missense_Mutation_p.R726K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	732	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AGTGTGCACTCTCTTATGACT	0.517000													4	45					0	0	1	0	0
SEC1	653677	broad.mit.edu	37	19	49183574	49183574	+	Silent	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr19:49183574C>T	uc010xzv.1	+	5	721	c.594C>T	c.(592-594)ACC>ACT	p.T198T	SEC1_uc002pka.2_Silent_p.T158T|SEC1_uc010xzw.1_Silent_p.T115T|SEC1_uc010ema.2_Silent_p.T104T	NR_004401				SubName: Full=cDNA FLJ58287, highly similar to Galactoside 2-alpha-L-fucosyltransferase 2 (EC 2.4.1.69);												0						TGCACAGCACCCTGGCCCCCA	0.667000													4	18					0	0	1	0	0
CYP26B1	56603	broad.mit.edu	37	2	72362274	72362274	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr2:72362274C>T	uc002sih.1	-	3	704	c.704G>A	c.(703-705)CGG>CAG	p.R235Q	CYP26B1_uc010yra.1_Missense_Mutation_p.R218Q|CYP26B1_uc010yrb.1_Missense_Mutation_p.R160Q	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	235					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						GGTGCTCACCCGCCGGTAGCC	0.637000													4	55					0	0	1	0	0
FBLN7	129804	broad.mit.edu	37	2	112944825	112944825	+	Silent	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr2:112944825C>T	uc002tho.1	+	8	1333	c.1062C>T	c.(1060-1062)CTC>CTT	p.L354L	FBLN7_uc002thn.2_Intron|FBLN7_uc010fki.1_Silent_p.L308L|FBLN7_uc010fkj.1_Silent_p.L220L	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	354					cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						CCATCACGCTCTTCCGCATGG	0.647000													15	176					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802239	185802239	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr2:185802239G>A	uc002uph.2	+	4	2710	c.2116G>A	c.(2116-2118)GCA>ACA	p.A706T		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	706						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ACAATCAAATGCAACAATGAT	0.308000													4	98					0	0	1	0	0
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	T	T	rs121913500		TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr2:209113112C>T	uc002vcs.2	-	4	641	c.395G>A	c.(394-396)CGT>CAT	p.R132H	IDH1_uc002vct.2_Missense_Mutation_p.R132H|IDH1_uc002vcu.2_Missense_Mutation_p.R132H	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		ATAAGCATGACGACCTATGAT	0.393000			Mis		gliobastoma 								26	74					0	0	1	0	0
ACCN5	51802	broad.mit.edu	37	4	156764859	156764859	+	Missense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr4:156764859C>T	uc003ipe.1	-	5	882	c.835G>A	c.(835-837)GCA>ACA	p.A279T		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	279	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		GTTACCCTTGCGTGCATTCCC	0.448000													35	105					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13919350	13919350	+	Silent	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr5:13919350A>G	uc003jfd.2	-	7	952	c.910T>C	c.(910-912)TTG>CTG	p.L304L	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	304	Potential.|Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GGGCTTTTCAATTGTTCCAAA	0.507000									Kartagener_syndrome				28	218					0	0	1	0	0
CWC27	10283	broad.mit.edu	37	5	64096085	64096085	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr5:64096085G>A	uc003jtn.1	+	8	899	c.680G>A	c.(679-681)GGC>GAC	p.G227D	CWC27_uc003jtl.2_Missense_Mutation_p.G227D|CWC27_uc003jtm.2_Missense_Mutation_p.G227D|CWC27_uc010iwt.1_Missense_Mutation_p.G227D	NM_005869	NP_005860	Q6UX04	CWC27_HUMAN	serologically defined colon cancer antigen 10	227	Potential.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity				0						AGCATGAAGGGCAAAAGCAAA	0.358000													4	94					0	0	1	0	0
ATP6AP1L	92270	broad.mit.edu	37	5	81608458	81608458	+	Missense_Mutation	SNP	T	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr5:81608458T>G	uc003khv.2	+	9	1485	c.160T>G	c.(160-162)TCC>GCC	p.S54A	ATP6AP1L_uc003khw.2_Missense_Mutation_p.S54A	NM_001017971	NP_001017971	Q52LC2	VAS1L_HUMAN	ATPase, H+ transporting, lysosomal accessory	54					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						CAACAAGTTGTCCATCCAGAG	0.413000											OREG0016689	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	213					0	0	1	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													3	24					0	0	1	0	0
HTR4	3360	broad.mit.edu	37	5	147889456	147889456	+	Nonsense_Mutation	SNP	G	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr5:147889456G>T	uc003lpn.2	-	6	803	c.639C>A	c.(637-639)TAC>TAA	p.Y213*	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Nonsense_Mutation_p.Y213*|HTR4_uc003lpj.1_Nonsense_Mutation_p.Y213*|HTR4_uc003lpk.2_Nonsense_Mutation_p.Y213*|HTR4_uc011dby.1_Nonsense_Mutation_p.Y213*|HTR4_uc003lpl.2_Nonsense_Mutation_p.Y227*|HTR4_uc003lpm.2_Nonsense_Mutation_p.Y213*|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Nonsense_Mutation_p.Y213*	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	213	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	CATAGATGCGGTAATAGGCCA	0.542000													23	38					2.89027e-11	3.03012e-11	1	1	0
ODZ2	57451	broad.mit.edu	37	5	167674102	167674102	+	Missense_Mutation	SNP	A	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr5:167674102A>G	uc010jjd.2	+	27	6131	c.6131A>G	c.(6130-6132)AAC>AGC	p.N2044S	ODZ2_uc003lzr.3_Missense_Mutation_p.N1814S|ODZ2_uc003lzt.3_Missense_Mutation_p.N1417S|ODZ2_uc010jje.2_Missense_Mutation_p.N1308S	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		AAGATGGTCAACCTCCAAAGT	0.522000													61	119					0	0	1	0	0
C6orf10	10665	broad.mit.edu	37	6	32261116	32261116	+	Missense_Mutation	SNP	T	G	G			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr6:32261116T>G	uc011dpy.1	-	12	1507	c.1334A>C	c.(1333-1335)AAG>ACG	p.K445T	C6orf10_uc011dpx.1_Missense_Mutation_p.K227T	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	445						integral to membrane				skin(1)	1						TGCCTCACTCTTCTTTTCTTG	0.458000													27	345					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54735129	54735129	+	Nonsense_Mutation	SNP	C	T	T			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr6:54735129C>T	uc003pck.2	+	2	201	c.85C>T	c.(85-87)CGA>TGA	p.R29*		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	29										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GGAATGGTATCGAGTAGCCAT	0.403000													55	141					0	0	1	0	0
FLJ10661	286042	broad.mit.edu	37	8	8094672	8094672	+	RNA	SNP	T	C	C	rs73199790	by1000genomes	TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr8:8094672T>C	uc011kwt.1	+	7		c.901T>C			FLJ10661_uc010lrq.2_RNA|FLJ10661_uc003wsf.3_RNA	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						CCAGAAGCCATTGTGTCACTG	0.602000													3	41					0	0	1	0	0
TACC1	6867	broad.mit.edu	37	8	38678119	38678119	+	Missense_Mutation	SNP	G	C	C			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr8:38678119G>C	uc010lwp.2	+	3	1736	c.1357G>C	c.(1357-1359)GAA>CAA	p.E453Q	TACC1_uc011lby.1_Missense_Mutation_p.E258Q|TACC1_uc003xma.2_Intron|TACC1_uc003xlz.2_Missense_Mutation_p.E258Q|TACC1_uc003xmc.3_Missense_Mutation_p.E258Q|TACC1_uc011lbz.1_Missense_Mutation_p.E469Q|TACC1_uc003xmb.3_Missense_Mutation_p.E408Q|TACC1_uc003xme.1_Intron|TACC1_uc003xmd.1_Intron|TACC1_uc010lwo.1_Intron|TACC1_uc003xmf.3_Intron|TACC1_uc011lca.1_Missense_Mutation_p.E453Q|TACC1_uc011lcb.1_Missense_Mutation_p.E258Q|TACC1_uc011lcc.1_Missense_Mutation_p.E258Q|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Missense_Mutation_p.E258Q|TACC1_uc010lwq.2_Missense_Mutation_p.E258Q	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	453	SPAZ 2.				cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			TGAAATCTTAGAATCACCCAA	0.453000													104	212					0	0	1	0	0
KIF24	347240	broad.mit.edu	37	9	34257924	34257924	+	Missense_Mutation	SNP	G	A	A	rs144983593		TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr9:34257924G>A	uc003zua.3	-	11	1801	c.1681C>T	c.(1681-1683)CGG>TGG	p.R561W	KIF24_uc010mkb.2_Intron	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	561					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			CCAGATGTCCGATTTCGACTG	0.398000													112	56					0	0	1	0	0
FAM120A	23196	broad.mit.edu	37	9	96324505	96324505	+	Silent	SNP	T	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr9:96324505T>A	uc004atw.2	+	17	2989	c.2964T>A	c.(2962-2964)GTT>GTA	p.V988V	FAM120A_uc004aty.2_Silent_p.V769V|FAM120A_uc004atz.2_Silent_p.V636V|FAM120A_uc010mrg.2_Silent_p.V255V|FAM120A_uc004aua.1_5'Flank	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	988	RNA binding.					cytoplasm|plasma membrane	RNA binding				0						CAAGAGGAGTTATTTCCACCC	0.368000													18	46					0	0	1	0	0
GBGT1	26301	broad.mit.edu	37	9	136029281	136029281	+	Missense_Mutation	SNP	G	A	A			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr9:136029281G>A	uc004ccw.2	-	7	1008	c.727C>T	c.(727-729)CGC>TGC	p.R243C	RALGDS_uc011mcw.1_Intron|GBGT1_uc004ccx.2_Missense_Mutation_p.R196C|GBGT1_uc010nab.2_3'UTR|GBGT1_uc011mcx.1_Missense_Mutation_p.R226C|GBGT1_uc010nac.1_Missense_Mutation_p.R107C|GBGT1_uc004ccy.1_3'UTR	NM_021996	NP_068836	Q8N5D6	GBGT1_HUMAN	globoside	243	Lumenal (Potential).				carbohydrate metabolic process|glycolipid biosynthetic process	Golgi membrane|integral to membrane	metal ion binding				0				OV - Ovarian serous cystadenocarcinoma(145;3.49e-06)|Epithelial(140;2.59e-05)		ACACGCCTGCGCTCATAGGGG	0.602000													44	97					0	0	1	0	0
KTI12	112970	broad.mit.edu	37	1	52498859	52498865	+	Frame_Shift_Del	DEL	GAATCCG	-	-	rs2783175	byFrequency	TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:52498859_52498865delGAATCCG	uc001ctj.1	-	1	608_614	c.569_575delCGGATTC	c.(568-576)CCGGATTCAfs	p.P190fs	TXNDC12_uc001cti.2_Intron	NM_138417	NP_612426	Q96EK9	KTI12_HUMAN	KTI12 homolog, chromatin associated	190_192							ATP binding			central_nervous_system(2)	2						AGATTTCTCTGAATCCGGAGTCACAAG	0.575													11	97	---	---	---	---					
ARID4B	51742	broad.mit.edu	37	1	235345238	235345244	+	Frame_Shift_Del	DEL	TCTTCAA	-	-			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr1:235345238_235345244delTCTTCAA	uc001hwq.2	-	20	3488_3494	c.2990_2996delTTGAAGA	c.(2989-2997)ATTGAAGAAfs	p.I997fs	ARID4B_uc001hwr.2_Frame_Shift_Del_p.I911fs|ARID4B_uc001hws.3_Frame_Shift_Del_p.I911fs|ARID4B_uc001hwp.2_RNA|ARID4B_uc001hwt.3_Frame_Shift_Del_p.I678fs	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	997_999					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TACTGTTTTTTCTTCAATGGGTTTACT	0.444													53	84	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95921888	95921890	+	In_Frame_Del	DEL	CTC	-	-			TCGA-HT-8109-01A-11D-2395-08	TCGA-HT-8109-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	61523043-c989-4ebc-8d20-80f1c578aa38	a2939a7a-eec5-4cf0-821a-f0bb89ad36e7	g.chr14:95921888_95921890delCTC	uc001yei.3	-	5	976_978	c.961_963delGAG	c.(961-963)GAGdel	p.E321del	C14orf49_uc010avi.2_In_Frame_Del_p.E321del|C14orf49_uc001yej.1_In_Frame_Del_p.E321del	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	321	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		CCCGCAGCCGCTCCTCCTCCTCC	0.616													7	238	---	---	---	---					
