Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
RAP1GAP	5909	broad.mit.edu	36	1	21816446	21816446	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			G	T	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Silent	SNP	21816446	21816446	RAP1GAP	1	G	G	T	47
IQCC	55721	broad.mit.edu	36	1	32445218	32445218	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32445218	32445218	IQCC	1	C	C	T	26
GLB1L2	89944	broad.mit.edu	36	11	133717917	133717917	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133717917	133717917	GLB1L2	11	C	C	T	26
STAB2	55576	broad.mit.edu	36	12	102642987	102642987	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	102642987	102642987	STAB2	12	C	C	T	27
SRRM4	84530	broad.mit.edu	36	12	118052871	118052871	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	118052871	118052871	SRRM4	12	G	G	A	38
MUDENG	55745	broad.mit.edu	36	14	56822720	56822720	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	56822720	56822720	MUDENG	14	A	A	G	6
DYNC1H1	1778	broad.mit.edu	36	14	101562692	101562692	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	101562692	101562692	DYNC1H1	14	T	T	A	61
ACAN	176	broad.mit.edu	36	15	87218208	87218208	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	87218208	87218208	ACAN	15	C	C	T	23
WDR90	197335	broad.mit.edu	36	16	645066	645066	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	645066	645066	WDR90	16	G	G	A	39
PKMYT1	9088	broad.mit.edu	36	16	2964085	2964085	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	2964085	2964085	PKMYT1	16	C	C	T	27
WIPF2	147179	broad.mit.edu	36	17	35670312	35670312	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	35670312	35670312	WIPF2	17	G	G	A	35
OR7C1	26664	broad.mit.edu	36	19	14771869	14771869	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	14771869	14771869	OR7C1	19	A	A	G	11
FAM123C	205147	broad.mit.edu	36	2	131237037	131237037	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	131237037	131237037	FAM123C	2	A	A	T	7
C20orf197	284756	broad.mit.edu	36	20	58079162	58079162	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58079162	58079162	C20orf197	20	T	T	C	55
WBP2NL	164684	broad.mit.edu	36	22	40724784	40724784	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40724784	40724784	WBP2NL	22	A	A	T	11
SEMA3G	56920	broad.mit.edu	36	3	52450445	52450445	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	52450445	52450445	SEMA3G	3	C	C	T	27
ST3GAL6	10402	broad.mit.edu	36	3	99993426	99993426	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			A	G	A	A	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	99993426	99993426	ST3GAL6	3	A	A	G	8
CHRD	8646	broad.mit.edu	36	3	185587198	185587198	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	185587198	185587198	CHRD	3	G	G	A	38
MED10	84246	broad.mit.edu	36	5	6425624	6425624	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6425624	6425624	MED10	5	G	G	A	42
MAST4	375449	broad.mit.edu	36	5	66386056	66386056	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	66386056	66386056	MAST4	5	C	C	T	29
KCNN2	3781	broad.mit.edu	36	5	113768427	113768427	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113768427	113768427	KCNN2	5	G	G	A	38
UNC5A	90249	broad.mit.edu	36	5	176234015	176234015	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	176234015	176234015	UNC5A	5	G	G	A	38
FOXC1	2296	broad.mit.edu	36	6	1556120	1556120	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	1556120	1556120	FOXC1	6	C	C	T	25
HIST1H2BK	85236	broad.mit.edu	36	6	27222467	27222467	+	Silent	SNP	G	G	A	rs12207760	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27222467	27222467	HIST1H2BK	6	G	G	A	46
MAS1L	116511	broad.mit.edu	36	6	29562786	29562786	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29562786	29562786	MAS1L	6	C	C	T	17
DNAH8	1769	broad.mit.edu	36	6	38949054	38949054	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			T	C	T	T	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	38949054	38949054	DNAH8	6	T	T	C	64
PAPOLB	56903	broad.mit.edu	36	7	4867818	4867818	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4867818	4867818	PAPOLB	7	G	G	A	37
PRKAR2B	5577	broad.mit.edu	36	7	106574068	106574068	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	106574068	106574068	PRKAR2B	7	G	G	A	37
ING3	54556	broad.mit.edu	36	7	120396395	120396395	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	120396395	120396395	ING3	7	G	G	C	35
FLNC	2318	broad.mit.edu	36	7	128272219	128272219	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128272219	128272219	FLNC	7	C	C	T	23
ZFHX4	79776	broad.mit.edu	36	8	77928837	77928837	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	77928837	77928837	ZFHX4	8	C	C	T	19
DCAF4L2	138009	broad.mit.edu	36	8	88954868	88954868	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88954868	88954868	DCAF4L2	8	C	C	G	25
CBWD1	55871	broad.mit.edu	36	9	168930	168930	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	168930	168930	CBWD1	9	G	G	C	41
ADAMTSL1	92949	broad.mit.edu	36	9	18564169	18564169	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			G	A	G	G	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	18564169	18564169	ADAMTSL1	9	G	G	A	35
SLC44A1	23446	broad.mit.edu	36	9	107150529	107150529	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107150529	107150529	SLC44A1	9	G	G	T	46
PLP1	5354	broad.mit.edu	36	X	102928267	102928267	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10			C	T	C	C	Unknown	Valid	Somatic	x	x	Sequenom_PCR_WGA			x	Broad	Missense_Mutation	SNP	102928267	102928267	PLP1	23	C	C	T	27
TP53	7157	broad.mit.edu	36	17	7518254	7518254	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Missense_Mutation	SNP	7518254	7518254	TP53	17	A	A	C	12
ITPKB	3707	broad.mit.edu	36	1	224989954	224989956	+	In_Frame_Del	DEL	GAG	-	GAG	novel	Unknown	TCGA-13-1504-01	TCGA-13-1504-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	224989954	224989956	ITPKB	1	GAG	-	GAG	45
