Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
MACF1	23499	broad.mit.edu	36	1	39571992	39571992	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39571992	39571992	MACF1	1	G	G	A	46
PODN	127435	broad.mit.edu	36	1	53315557	53315557	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53315557	53315557	PODN	1	G	G	A	38
BEND7	222389	broad.mit.edu	36	10	13581899	13581899	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	13581899	13581899	BEND7	10	C	C	T	19
RET	5979	broad.mit.edu	36	10	42929961	42929961	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42929961	42929961	RET	10	C	C	T	19
ACCSL	390110	broad.mit.edu	36	11	44038023	44038023	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44038023	44038023	ACCSL	11	T	T	G	60
AGBL2	79841	broad.mit.edu	36	11	47664083	47664083	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	47664083	47664083	AGBL2	11	G	G	T	37
AAAS	8086	broad.mit.edu	36	12	51987696	51987696	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	51987696	51987696	AAAS	12	G	G	A	42
ATP6V0A2	23545	broad.mit.edu	36	12	122799083	122799083	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	122799083	122799083	ATP6V0A2	12	G	G	A	35
ATP11A	23250	broad.mit.edu	36	13	112560572	112560572	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	112560572	112560572	ATP11A	13	G	G	A	41
ZFYVE26	23503	broad.mit.edu	36	14	67343890	67343890	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	67343890	67343890	ZFYVE26	14	C	C	T	31
C15orf42	90381	broad.mit.edu	36	15	87920451	87920451	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	87920451	87920451	C15orf42	15	G	G	A	43
TRAF7	84231	broad.mit.edu	36	16	2163968	2163968	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2163968	2163968	TRAF7	16	G	G	A	42
A2BP1	54715	broad.mit.edu	36	16	7620669	7620669	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7620669	7620669	A2BP1	16	T	T	C	56
NFATC2IP	84901	broad.mit.edu	36	16	28873481	28873482	+	Nonsense_Mutation	DNP	AG	AG	CT	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	DNP	28873481	28873482	NFATC2IP	16	AG	AG	CT	3
TP53	7157	broad.mit.edu	36	17	7519119	7519119	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7519119	7519119	TP53	17	T	T	C	51
GGNBP2	79893	broad.mit.edu	36	17	32017611	32017611	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32017611	32017611	GGNBP2	17	G	G	T	48
KIF18B	146909	broad.mit.edu	36	17	40365571	40365571	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	40365571	40365571	KIF18B	17	C	C	T	32
DCC	1630	broad.mit.edu	36	18	49086015	49086015	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	49086015	49086015	DCC	18	C	C	T	31
ONECUT2	9480	broad.mit.edu	36	18	53294727	53294727	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53294727	53294727	ONECUT2	18	G	G	A	38
RFXANK	8625	broad.mit.edu	36	19	19170992	19170992	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	19170992	19170992	RFXANK	19	G	G	A	37
ZNF585B	92285	broad.mit.edu	36	19	42369890	42369890	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	42369890	42369890	ZNF585B	19	T	T	C	49
MFSD2B	388931	broad.mit.edu	36	2	24098113	24098113	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	24098113	24098113	MFSD2B	2	G	G	A	44
FAM179A	165186	broad.mit.edu	36	2	29074585	29074585	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29074585	29074585	FAM179A	2	C	C	T	23
NRXN1	9378	broad.mit.edu	36	2	50619171	50619171	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50619171	50619171	NRXN1	2	C	C	T	28
UXS1	80146	broad.mit.edu	36	2	106128237	106128237	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	106128237	106128237	UXS1	2	C	C	G	19
CNTNAP5	129684	broad.mit.edu	36	2	125388238	125388238	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	125388238	125388238	CNTNAP5	2	A	A	C	3
C20orf3	57136	broad.mit.edu	36	20	24897674	24897674	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24897674	24897674	C20orf3	20	C	C	T	30
TRIOBP	11078	broad.mit.edu	36	22	36449344	36449344	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36449344	36449344	TRIOBP	22	T	T	C	54
DVL3	1857	broad.mit.edu	36	3	185365317	185365317	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	185365317	185365317	DVL3	3	G	G	A	37
CPN2	1370	broad.mit.edu	36	3	195544077	195544077	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	195544077	195544077	CPN2	3	C	C	G	23
TNK2	10188	broad.mit.edu	36	3	197079665	197079665	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	197079665	197079665	TNK2	3	G	G	A	40
UGT2A1	10941	broad.mit.edu	36	4	70547827	70547827	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70547827	70547827	UGT2A1	4	T	T	G	54
MUC7	4589	broad.mit.edu	36	4	71381235	71381235	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	71381235	71381235	MUC7	4	C	C	G	30
RAD1	5810	broad.mit.edu	36	5	34950670	34950670	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34950670	34950670	RAD1	5	T	T	C	59
WDR70	55100	broad.mit.edu	36	5	37515767	37515767	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37515767	37515767	WDR70	5	A	A	T	3
DMGDH	29958	broad.mit.edu	36	5	78395229	78395229	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	78395229	78395229	DMGDH	5	T	T	C	54
FBN2	2201	broad.mit.edu	36	5	127713044	127713044	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	127713044	127713044	FBN2	5	C	C	T	17
PCDHB13	56123	broad.mit.edu	36	5	140574459	140574460	+	Missense_Mutation	DNP	GA	GA	CG	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	140574459	140574460	PCDHB13	5	GA	GA	CG	33
GMNN	51053	broad.mit.edu	36	6	24892316	24892316	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24892316	24892316	GMNN	6	G	G	T	41
BRD2	6046	broad.mit.edu	36	6	33052440	33052440	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33052440	33052440	BRD2	6	C	C	T	27
MRPL14	64928	broad.mit.edu	36	6	44189821	44189821	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44189821	44189821	MRPL14	6	G	G	T	47
DDX43	55510	broad.mit.edu	36	6	74161589	74161589	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74161589	74161589	DDX43	6	C	C	T	27
RRAGD	58528	broad.mit.edu	36	6	90134616	90134616	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	90134616	90134616	RRAGD	6	G	G	A	39
DBNL	28988	broad.mit.edu	36	7	44066903	44066904	+	Missense_Mutation	DNP	GA	GA	TG	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	44066903	44066904	DBNL	7	GA	GA	TG	37
ABCB1	5243	broad.mit.edu	36	7	86982512	86982512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	86982512	86982512	ABCB1	7	G	G	A	38
CNTNAP2	26047	broad.mit.edu	36	7	147500486	147500486	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	147500486	147500486	CNTNAP2	7	G	G	T	41
CNBD1	168975	broad.mit.edu	36	8	88021014	88021014	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88021014	88021014	CNBD1	8	A	A	G	7
FAM135B	51059	broad.mit.edu	36	8	139234445	139234445	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	139234445	139234445	FAM135B	8	A	A	G	8
TBC1D2	55357	broad.mit.edu	36	9	100046197	100046197	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100046197	100046197	TBC1D2	9	G	G	C	43
HTR2C	3358	broad.mit.edu	36	X	114048035	114048035	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	114048035	114048035	HTR2C	23	C	C	T	24
DOCK11	139818	broad.mit.edu	36	X	117693958	117693958	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-2060-01	TCGA-13-2060-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	117693958	117693958	DOCK11	23	G	G	T	41
