Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
CPSF3L	54973	broad.mit.edu	37	1	1248900	1248900	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:1248900C>T	uc001aee.1	-	10	1088	c.1030G>A	c.(1030-1032)GAA>AAA	p.E344K	CPSF3L_uc009vjy.1_RNA|CPSF3L_uc001aef.1_Missense_Mutation_p.E350K|CPSF3L_uc009vjz.1_Missense_Mutation_p.E322K|CPSF3L_uc010nyj.1_Missense_Mutation_p.E315K|CPSF3L_uc001aeg.1_Missense_Mutation_p.E220K|CPSF3L_uc001aeh.1_Missense_Mutation_p.E243K|CPSF3L_uc001aei.1_Missense_Mutation_p.E246K|CPSF3L_uc001aej.1_Missense_Mutation_p.E171K|CPSF3L_uc001aek.1_Missense_Mutation_p.E86K	NM_017871	NP_060341	Q5TA45	INT11_HUMAN	cleavage and polyadenylation specific factor	344						Golgi apparatus|nucleus	hydrolase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(86;4.35e-21)|Colorectal(212;0.000166)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.00235)|BRCA - Breast invasive adenocarcinoma(365;0.00255)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0349)|Lung(427;0.201)		ATGTTCTTTTCGTTTCCGGCC	0.592000													16	44					0	0	0.007413	0	0	
PRDM16	63976	broad.mit.edu	37	1	3328286	3328286	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:3328286G>A	uc001akf.2	+	9	1605	c.1525G>A	c.(1525-1527)GCA>ACA	p.A509T	PRDM16_uc001akc.2_Missense_Mutation_p.A509T|PRDM16_uc001akd.2_Missense_Mutation_p.A509T|PRDM16_uc001ake.2_Missense_Mutation_p.A509T|PRDM16_uc009vlh.2_Missense_Mutation_p.A210T	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	509	Pro-rich.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CACGTTCCCCGCACTCACCCC	0.677000			T	EVI1	MDS|AML								40	87					0	0	0.008740	0	0	
ARHGEF16	27237	broad.mit.edu	37	1	3386085	3386085	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:3386085G>A	uc001akg.3	+	6	1198	c.950G>A	c.(949-951)CGG>CAG	p.R317Q	ARHGEF16_uc001aki.2_Missense_Mutation_p.R29Q|ARHGEF16_uc001akj.2_Missense_Mutation_p.R29Q|ARHGEF16_uc009vli.1_5'Flank|ARHGEF16_uc010nzh.1_5'Flank	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	317	DH.|Required for RHOG activation and mediates interaction with EPHA2.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		AAGGAGCTGCGGGCGACCGTG	0.612000													9	40					0	0	0.004482	0	0	
CCDC27	148870	broad.mit.edu	37	1	3669276	3669276	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:3669276C>T	uc001akv.2	+	1	312	c.231C>T	c.(229-231)GAC>GAT	p.D77D		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	77										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		CCAGCCGGGACGCCCGGTGCC	0.622000													14	19					0	0	0.001855	0	0	
CAMTA1	23261	broad.mit.edu	37	1	7797322	7797322	+	Missense_Mutation	SNP	C	T	T	rs149702154		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:7797322C>T	uc001aoi.2	+	15	3557	c.3350C>T	c.(3349-3351)GCG>GTG	p.A1117V	CAMTA1_uc010nzv.1_Missense_Mutation_p.A204V|CAMTA1_uc001aok.3_Missense_Mutation_p.A160V|CAMTA1_uc001aoj.2_Missense_Mutation_p.A73V	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1117	ANK 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		TAGATGTGGGCGTGTGCCCTA	0.547000													40	100					0	0	0.010771	0	0	
UBE4B	10277	broad.mit.edu	37	1	10190583	10190583	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:10190583C>T	uc001aqs.3	+	13	2434	c.1721C>T	c.(1720-1722)CCG>CTG	p.P574L	UBE4B_uc001aqr.3_Missense_Mutation_p.P445L|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.P29L|UBE4B_uc001aqt.1_5'Flank	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	574					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		TTGTGGTTGCCGAAATCCTTA	0.488000													55	136					0	0	0.003610	0	0	
CASZ1	54897	broad.mit.edu	37	1	10725240	10725240	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:10725240G>A	uc001aro.2	-	5	725	c.405C>T	c.(403-405)CAC>CAT	p.H135H	CASZ1_uc001arp.1_Silent_p.H135H|CASZ1_uc009vmx.2_Silent_p.H159H	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	135					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GCTCCTCCGCGTGGTCTTCCT	0.692000													14	33					0	0	0.002450	0	0	
MIIP	60672	broad.mit.edu	37	1	12091856	12091856	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:12091856G>A	uc001ato.1	+	10	1338	c.1158G>A	c.(1156-1158)CAG>CAA	p.Q386Q		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	386										ovary(1)	1						TCCCACGGCAGAAGCCCTGAG	0.677000													25	52					0	0	0.003330	0	0	
SPEN	23013	broad.mit.edu	37	1	16263675	16263675	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:16263675T>C	uc001axk.1	+	12	10248	c.10044T>C	c.(10042-10044)GGT>GGC	p.G3348G	SPEN_uc010obp.1_Silent_p.G3307G	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3348	Pro-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CTCCTGAAGGTGAGCCCCTGC	0.642000													21	51					0	0	0.010504	0	0	
CLCNKA	1187	broad.mit.edu	37	1	16358730	16358730	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:16358730G>A	uc001axu.2	+	17	1869	c.1789G>A	c.(1789-1791)GCC>ACC	p.A597T	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Missense_Mutation_p.A597T|CLCNKA_uc010obw.1_Missense_Mutation_p.A554T|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010oby.1_3'UTR	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	597	CBS 1.				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	CGTGCAGAGGGCCCAGCTGGT	0.642000													12	39					0	0	0.010729	0	0	
MST1P2	11209	broad.mit.edu	37	1	16975030	16975030	+	RNA	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:16975030G>A	uc010och.1	+	7		c.1490G>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CTCGGTTCACGTTTACCTCCG	0.607000													5	58					0	0	0.001168	0	0	
MST1P2	11209	broad.mit.edu	37	1	16975289	16975289	+	Splice_Site	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:16975289T>A	uc010och.1	+	8		c.1656_splice	c.e8+2		MST1P2_uc001azl.3_Splice_Site|MST1P2_uc009vox.2_Splice_Site|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCCCCCCAGGTTAGGAGTTGG	0.577000													7	71					0	0	0.003080	0	0	
CROCC	9696	broad.mit.edu	37	1	17272894	17272894	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:17272894C>T	uc001azt.2	+	16	2346	c.2277C>T	c.(2275-2277)GTC>GTT	p.V759V	CROCC_uc009voz.1_Silent_p.V522V|CROCC_uc001azu.2_Silent_p.V62V	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	759	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		ACCGCCTTGTCGCCCAGGTAC	0.597000													16	127					0	0	0.004990	0	0	
PADI3	51702	broad.mit.edu	37	1	17597402	17597402	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:17597402A>G	uc001bai.2	+	8	900	c.860A>G	c.(859-861)GAC>GGC	p.D287G		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	287					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	ATCTTCACTGACACTGTGGTG	0.453000													11	32					0	0	0.001855	0	0	
UBR4	23352	broad.mit.edu	37	1	19441312	19441312	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:19441312C>T	uc001bbi.2	-	75	11199	c.11195G>A	c.(11194-11196)CGG>CAG	p.R3732Q	UBR4_uc001bbj.1_Missense_Mutation_p.R147Q	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3732					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CACCTTCTTCCGGTCTTCTTC	0.527000													47	89					0	0	0.003610	0	0	
EPHA10	284656	broad.mit.edu	37	1	38227513	38227513	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:38227513G>A	uc009vvi.2	-	3	500	c.414C>T	c.(412-414)GGC>GGT	p.G138G	EPHA10_uc001cbw.3_Silent_p.G138G	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	138	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GACGCCCACGGCCCAGGTCGG	0.657000													24	39					0	0	0.002780	0	0	
ZNF684	127396	broad.mit.edu	37	1	41012975	41012975	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:41012975A>G	uc001cft.1	+	5	1231	c.980A>G	c.(979-981)TAC>TGC	p.Y327C		NM_152373	NP_689586	Q5T5D7	ZN684_HUMAN	zinc finger protein 684	327	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.42e-18)			GAGAAACCTTACAGTTGTATT	0.423000													52	90					0	0	0.003610	0	0	
HIVEP3	59269	broad.mit.edu	37	1	42049392	42049392	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:42049392C>T	uc001cgz.3	-	4	2290	c.1077G>A	c.(1075-1077)ACG>ACA	p.T359T	HIVEP3_uc001cha.3_Silent_p.T359T|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	359	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				TCTGCTTAATCGTGTGGGTGT	0.567000													29	57					0	0	0.008361	0	0	
CDC20	991	broad.mit.edu	37	1	43825904	43825904	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:43825904C>T	uc001cix.2	+	6	698	c.597C>T	c.(595-597)GCC>GCT	p.A199A	CDC20_uc001ciy.2_Silent_p.A199A	NM_001255	NP_001246	Q12834	CDC20_HUMAN	cell division cycle 20	199	WD 1.				activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of synapse maturation|positive regulation of synaptic plasticity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	cytosol|nucleoplasm|spindle	enzyme binding|protein C-terminus binding				0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				ATGTACTGGCCGTGGCACTGG	0.522000													38	98					0	0	0.006230	0	0	
ZSWIM5	57643	broad.mit.edu	37	1	45501386	45501386	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:45501386G>T	uc001cnd.2	-	10	2493	c.2265C>A	c.(2263-2265)TCC>TCA	p.S755S		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	755							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					CTAATTTATAGGACAGGTCTG	0.488000													17	38					3.41278e-10	3.61322e-10	0.004990	1	0	
LRRC41	10489	broad.mit.edu	37	1	46745250	46745250	+	Missense_Mutation	SNP	C	T	T	rs28363251		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:46745250C>T	uc001cpn.2	-	8	2101	c.2057G>A	c.(2056-2058)CGC>CAC	p.R686H	LRRC41_uc010omb.1_Missense_Mutation_p.R686H	NM_006369	NP_006360	Q15345	LRC41_HUMAN	MUF1 protein	686										ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(166;0.155)					TTGGGCTGGGCGCTTCTCAAA	0.557000													7	121					0	0	0.003080	0	0	
STIL	6491	broad.mit.edu	37	1	47717402	47717402	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:47717402A>G	uc001crc.1	-	17	3425	c.3270T>C	c.(3268-3270)TGT>TGC	p.C1090C	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Silent_p.C1044C|STIL_uc010omo.1_Silent_p.C1073C|STIL_uc001crd.1_Silent_p.C1091C|STIL_uc001cre.1_Silent_p.C1090C	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	1090					cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				TGAATGGGTCACAATTATTTT	0.373000													42	186					0	0	0.010771	0	0	
RAB3B	5865	broad.mit.edu	37	1	52403066	52403066	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:52403066G>A	uc001cth.2	-	3	372	c.247C>T	c.(247-249)CGG>TGG	p.R83W		NM_002867	NP_002858	P20337	RAB3B_HUMAN	RAB3B, member RAS oncogene family	83					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(1)	1						GTCCGGTACCGCTCCTGCCCA	0.468000													41	75					0	0	0.010771	0	0	
WDR63	126820	broad.mit.edu	37	1	85592282	85592282	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:85592282G>A	uc001dkt.2	+	20	2392	c.2201G>A	c.(2200-2202)GGC>GAC	p.G734D	WDR63_uc009wcl.2_Missense_Mutation_p.G695D	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	734	WD 4.									upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		TTCTACATCGGCCGAGAAGAT	0.473000													15	43					0	0	0.002450	0	0	
GBP1	2633	broad.mit.edu	37	1	89528741	89528741	+	Silent	SNP	A	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:89528741A>T	uc001dmx.2	-	2	397	c.177T>A	c.(175-177)GCT>GCA	p.A59A		NM_002053	NP_002044	P32455	GBP1_HUMAN	guanylate binding protein 1,	59					interferon-gamma-mediated signaling pathway	plasma membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.123)		all cancers(265;0.0156)|Epithelial(280;0.0291)		TTTTCTTTCCAGCCAGCTTGT	0.498000													18	53					0	0	0.008871	0	0	
NTNG1	22854	broad.mit.edu	37	1	107691423	107691423	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:107691423A>G	uc001dvh.3	+	2	926	c.208A>G	c.(208-210)ATT>GTT	p.I70V	NTNG1_uc001dvf.3_Missense_Mutation_p.I70V|NTNG1_uc010out.1_Missense_Mutation_p.I70V|NTNG1_uc001dvc.3_Missense_Mutation_p.I70V|NTNG1_uc001dvd.1_Missense_Mutation_p.I70V	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	70	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		TCCTCCGGATATTACCTGTGG	0.433000													33	73					0	0	0.002836	0	0	
SARS	6301	broad.mit.edu	37	1	109772189	109772189	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:109772189G>A	uc001dwu.1	+	4	517	c.442G>A	c.(442-444)GAT>AAT	p.D148N	SARS_uc001dwt.1_Missense_Mutation_p.D148N|SARS_uc001dwv.1_Missense_Mutation_p.D148N|SARS_uc001dww.1_Missense_Mutation_p.D81N|SARS_uc001dwx.1_Missense_Mutation_p.D148N|SARS_uc009wfa.1_Missense_Mutation_p.D148N|SARS_uc001dwy.1_5'UTR|SARS_uc001dwz.1_5'UTR	NM_006513	NP_006504	P49591	SYSC_HUMAN	seryl-tRNA synthetase	148					seryl-tRNA aminoacylation|tRNA processing	cytosol	ATP binding|protein binding|RNA binding|serine-tRNA ligase activity			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0301)|Lung(183;0.0677)|COAD - Colon adenocarcinoma(174;0.116)|Epithelial(280;0.233)	L-Serine(DB00133)	CATCAGTAACGATGAGGTAGG	0.582000													38	109					0	0	0.008740	0	0	
SYPL2	284612	broad.mit.edu	37	1	110020512	110020512	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:110020512G>A	uc001dxp.2	+	5	895	c.529G>A	c.(529-531)GAT>AAT	p.D177N	SYPL2_uc001dxo.2_Missense_Mutation_p.D177N|SYPL2_uc010ovk.1_Intron|SYPL2_uc001dxq.2_Missense_Mutation_p.D85N	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	177	Vesicular (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		GGGCCTGACCGATGTCAAGGG	0.607000													5	54					0	0	0.000602	0	0	
BCAS2	10286	broad.mit.edu	37	1	115123933	115123933	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:115123933T>C	uc001efa.2	-	2	226	c.173A>G	c.(172-174)TAT>TGT	p.Y58C	DENND2C_uc001eez.2_RNA	NM_005872	NP_005863	O75934	SPF27_HUMAN	breast carcinoma amplified sequence 2	58					mRNA processing|RNA splicing, via transesterification reactions	nucleolus|spliceosomal complex	protein binding			large_intestine(1)	1	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAAGGCAGAATAATCCGGGGC	0.453000													71	174					0	0	0.003610	0	0	
IGSF3	3321	broad.mit.edu	37	1	117142915	117142915	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:117142915G>A	uc001egr.1	-	7	2382	c.1677C>T	c.(1675-1677)AGC>AGT	p.S559S	IGSF3_uc001egq.1_Silent_p.S579S|IGSF3_uc001egs.1_Silent_p.S232S	NM_001007237	NP_001007238	O75054	IGSF3_HUMAN	immunoglobulin superfamily, member 3 isoform 2	559	Ig-like C2-type 5.|Extracellular (Potential).					integral to membrane				ovary(2)	2	Lung SC(450;0.225)	all_cancers(81;1.24e-06)|all_epithelial(167;4.85e-07)|all_lung(203;1.66e-06)|Lung NSC(69;1.11e-05)		Lung(183;0.0142)|Colorectal(144;0.0929)|LUSC - Lung squamous cell carcinoma(189;0.108)|COAD - Colon adenocarcinoma(174;0.139)|all cancers(265;0.159)|Epithelial(280;0.166)		CAAAGGAGTCGCTGTAGGTCA	0.587000													3	25					0	0	0.004672	0	0	
HAO2	51179	broad.mit.edu	37	1	119925576	119925576	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:119925576A>C	uc001ehq.1	+	4	522	c.170A>C	c.(169-171)GAG>GCG	p.E57A	HAO2_uc001ehr.1_Missense_Mutation_p.E57A	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	57	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		GATGTGTCTGAGGTGGACACC	0.547000													10	11					0	0	0.010729	0	0	
NBPF9	400818	broad.mit.edu	37	1	144816644	144816644	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:144816644T>C	uc009wig.1	+	13	1627	c.1551T>C	c.(1549-1551)CAT>CAC	p.H517H	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Silent_p.H517H|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Silent_p.H246H|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H177H	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	517	NBPF 2.					cytoplasm					0						CATCCTCTCATGTTGAACGGG	0.448000													57	400					0	0	0.003610	0	0	
PDE4DIP	9659	broad.mit.edu	37	1	144912234	144912234	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:144912234G>A	uc001elw.3	-	15	2332	c.2041C>T	c.(2041-2043)CGC>TGC	p.R681C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R747C|PDE4DIP_uc001emc.1_Missense_Mutation_p.R681C|PDE4DIP_uc001emd.1_Missense_Mutation_p.R681C|PDE4DIP_uc001emb.1_Missense_Mutation_p.R844C|PDE4DIP_uc001eme.1_Missense_Mutation_p.R210C|PDE4DIP_uc001emf.1_Missense_Mutation_p.R466C	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	681	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AAATATTGGCGCAGGGCCTGT	0.443000			T	PDGFRB	MPD								15	104					0	0	0.004007	0	0	
PIAS3	10401	broad.mit.edu	37	1	145578250	145578250	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:145578250G>A	uc001eoc.1	+	2	304	c.213G>A	c.(211-213)GGG>GGA	p.G71G	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_Silent_p.G62G|PIAS3_uc001eod.1_5'Flank	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	71					positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGACCCTGGGGCCCTCTGATC	0.607000													152	104					0	0	0.003610	0	0	
HRNR	388697	broad.mit.edu	37	1	152191477	152191477	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:152191477G>A	uc001ezt.1	-	3	2704	c.2628C>T	c.(2626-2628)CAC>CAT	p.H876H		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	876	10.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGCCCGAAGCGTGATGGGAGG	0.612000													38	129					0	0	0.004878	0	0	
FLG	2312	broad.mit.edu	37	1	152276878	152276878	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:152276878G>A	uc001ezu.1	-	3	10520	c.10484C>T	c.(10483-10485)TCA>TTA	p.S3495L		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3495	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCCATCTCCTGATTGTTCGTC	0.577000									Ichthyosis				85	403					0	0	0.003610	0	0	
FLG	2312	broad.mit.edu	37	1	152280586	152280586	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:152280586C>T	uc001ezu.1	-	3	6812	c.6776G>A	c.(6775-6777)CGG>CAG	p.R2259Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2259	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACCCAGACCGCCTCTCAGA	0.587000									Ichthyosis				86	387					0	0	0.003610	0	0	
FLG	2312	broad.mit.edu	37	1	152282533	152282533	+	Missense_Mutation	SNP	C	T	T	rs148200894	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:152282533C>T	uc001ezu.1	-	3	4865	c.4829G>A	c.(4828-4830)CGG>CAG	p.R1610Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1610	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CGACTCAGACCGCCTCTCAGA	0.567000									Ichthyosis				213	141					0	0	0.003610	0	0	
LCE1D	353134	broad.mit.edu	37	1	152770396	152770396	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:152770396C>A	uc009wnp.2	+	2	169	c.126C>A	c.(124-126)GTC>GTA	p.V42V		NM_178352	NP_848129	Q5T752	LCE1D_HUMAN	late cornified envelope 1D	42	Cys-rich.				cellular response to calcium ion|keratinization	cornified envelope|perinuclear region of cytoplasm					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTGCAGTGTCAGCTCCGGAG	0.562000													23	141					2.52088e-20	2.81238e-20	0.002780	1	0	
NUP210L	91181	broad.mit.edu	37	1	154030659	154030659	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:154030659T>G	uc001fdw.2	-	22	3085	c.3013A>C	c.(3013-3015)AGG>CGG	p.R1005R	NUP210L_uc009woq.2_Intron|NUP210L_uc010peh.1_Silent_p.R1005R	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1005				R -> K (in Ref. 1; BAC87279).		integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CCAAGAACCCTCACAGTCACT	0.398000													87	96					0	0	0.003610	0	0	
ZBTB7B	51043	broad.mit.edu	37	1	154988174	154988174	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:154988174G>A	uc001fgk.3	+	3	1196	c.1038G>A	c.(1036-1038)CAG>CAA	p.Q346Q	ZBTB7B_uc009wpa.2_Silent_p.Q346Q|ZBTB7B_uc001fgj.3_Silent_p.Q380Q|ZBTB7B_uc010peq.1_Silent_p.Q380Q|ZBTB7B_uc001fgl.3_Silent_p.Q346Q	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	346	C2H2-type 1.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			AGATGCCTCAGGAGTGCCCTG	0.622000													8	71					0	0	0.003080	0	0	
INSRR	3645	broad.mit.edu	37	1	156811544	156811544	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:156811544C>T	uc010pht.1	-	20	3694	c.3440G>A	c.(3439-3441)CGC>CAC	p.R1147H	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1147	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCACCCTTGCGGTAATAGTC	0.612000													19	130					0	0	0.010504	0	0	
CD1A	909	broad.mit.edu	37	1	158224939	158224939	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:158224939C>A	uc001frt.2	+	2	657	c.124C>A	c.(124-126)CAA>AAA	p.Q42K		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	42	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	TTCCTGGAAACAAAATCTGGT	0.498000													28	117					3.73148e-12	3.98762e-12	0.007291	1	0	
CD1A	909	broad.mit.edu	37	1	158224948	158224948	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:158224948G>A	uc001frt.2	+	2	666	c.133G>A	c.(133-135)GTC>ATC	p.V45I		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	45	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	ACAAAATCTGGTCTCAGGTTG	0.498000													28	119					0	0	0.007291	0	0	
MNDA	4332	broad.mit.edu	37	1	158813818	158813818	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:158813818C>T	uc001fsz.1	+	4	676	c.476C>T	c.(475-477)CCA>CTA	p.P159L		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	159					B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AGTAAGCCCCCAGGTCCCTCA	0.463000													34	215					0	0	0.012213	0	0	
CASQ1	844	broad.mit.edu	37	1	160165279	160165279	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:160165279G>T	uc010pja.1	+	5	863	c.606G>T	c.(604-606)GAG>GAT	p.E202D		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	202						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATGCAGCTGAGGAGTTTCATC	0.562000													50	77					6.3237e-29	7.1363e-29	0.003610	1	0	
VANGL2	57216	broad.mit.edu	37	1	160390844	160390844	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:160390844A>C	uc001fwb.1	+	7	1239	c.940A>C	c.(940-942)AAC>CAC	p.N314H	VANGL2_uc001fwc.1_Missense_Mutation_p.N314H	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	314	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTGTGCAGAAAACAGCACCAA	0.552000													11	51					0	0	0.008291	0	0	
SLAMF7	57823	broad.mit.edu	37	1	160721212	160721212	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:160721212G>C	uc001fwq.2	+	5	862	c.847G>C	c.(847-849)GAG>CAG	p.E283Q	SLAMF7_uc010pjn.1_Missense_Mutation_p.E189Q|SLAMF7_uc001fws.2_Missense_Mutation_p.E176Q|SLAMF7_uc001fwr.2_Intron|SLAMF7_uc010pjo.1_Missense_Mutation_p.E152Q|SLAMF7_uc010pjp.1_Missense_Mutation_p.E136Q|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	283	Cytoplasmic (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			AGAGAACACAGAGTACGACAC	0.453000													57	165					0	0	0.003610	0	0	
ADAMTS4	9507	broad.mit.edu	37	1	161163914	161163914	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:161163914G>A	uc001fyt.3	-	5	1787	c.1359C>T	c.(1357-1359)TTC>TTT	p.F453F		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	453	Disintegrin.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			AGTCGGGCCCGAAGGTCAGCT	0.602000													22	102					0	0	0.010504	0	0	
SELE	6401	broad.mit.edu	37	1	169699580	169699580	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:169699580G>T	uc001ggm.3	-	5	865	c.708C>A	c.(706-708)GCC>GCA	p.A236A	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	236	Sushi 1.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TACCATTGCAGGCTGGAATAG	0.448000													25	106					7.87624e-14	8.55028e-14	0.002780	1	0	
ASTN1	460	broad.mit.edu	37	1	177001771	177001771	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:177001771C>T	uc001glc.2	-	3	898	c.686G>A	c.(685-687)GGC>GAC	p.G229D	ASTN1_uc001glb.1_Missense_Mutation_p.G229D|ASTN1_uc001gld.1_Missense_Mutation_p.G229D|ASTN1_uc009wwx.1_Missense_Mutation_p.G229D|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	229					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GCTCAGGGTGCCACTGGAGTT	0.602000													29	90					0	0	0.006320	0	0	
DHX9	1660	broad.mit.edu	37	1	182844070	182844070	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:182844070A>G	uc001gpr.2	+	16	1959	c.1796A>G	c.(1795-1797)GAT>GGT	p.D599G	DHX9_uc001gps.2_Missense_Mutation_p.D385G	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	599					CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						aaggatgatgatggtggtgag	0.303000													48	61					0	0	0.003610	0	0	
LAMC1	3915	broad.mit.edu	37	1	183079760	183079760	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:183079760C>T	uc001gpy.3	+	4	1249	c.992C>T	c.(991-993)GCA>GTA	p.A331V		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	331	Laminin EGF-like 1.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGGAGGAGGGCAACTGCGGAA	0.483000													41	221					0	0	0.008740	0	0	
PRG4	10216	broad.mit.edu	37	1	186273298	186273298	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:186273298T>G	uc001gru.3	+	5	429	c.378T>G	c.(376-378)TCT>TCG	p.S126S	PRG4_uc001grt.3_Silent_p.S85S|PRG4_uc009wyl.2_Intron|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	126					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CAGGAGCATCTCAAACCATCA	0.403000													75	44					0	0	0.003610	0	0	
FAM5C	339479	broad.mit.edu	37	1	190233999	190233999	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:190233999A>C	uc001gse.1	-	4	846	c.614T>G	c.(613-615)ATA>AGA	p.I205R	FAM5C_uc010pot.1_Missense_Mutation_p.I103R	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	205						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TCTTACCTTTATGGCAGTGGA	0.393000													26	80					0	0	0.004656	0	0	
RGS1	5996	broad.mit.edu	37	1	192548282	192548282	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:192548282C>A	uc001gsi.1	+	5	526	c.460C>A	c.(460-462)CGC>AGC	p.R154S		NM_002922	NP_002913	Q08116	RGS1_HUMAN	regulator of G-protein signalling 1	154	RGS.				immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of signal transduction	cytoplasm|plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity				0		Breast(1374;0.188)				TATTGACTTCCGCACTCGAGA	0.333000													20	95					4.35082e-09	4.56403e-09	0.010504	1	0	
ASPM	259266	broad.mit.edu	37	1	197070110	197070110	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:197070110T>A	uc001gtu.2	-	18	8528	c.8271A>T	c.(8269-8271)AAA>AAT	p.K2757N	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.K605N	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2757	IQ 31.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CATTTTTCAATTTTTGTCTAA	0.348000													53	46					0	0	0.003610	0	0	
IGFN1	91156	broad.mit.edu	37	1	201186437	201186437	+	Silent	SNP	G	A	A	rs142174046	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:201186437G>A	uc001gwc.2	+	6	1870	c.1098G>A	c.(1096-1098)GCG>GCA	p.A366A	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCCCTTCCGCGCCAGCCATCC	0.677000													21	73					0	0	0.012319	0	0	
PLXNA2	5362	broad.mit.edu	37	1	208216456	208216456	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:208216456G>A	uc001hgz.2	-	21	4725	c.3967C>T	c.(3967-3969)CGA>TGA	p.R1323*		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1323	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		AACAGGACTCGCATAGCGTAG	0.602000													21	30					0	0	0.010504	0	0	
C1orf107	27042	broad.mit.edu	37	1	210004282	210004282	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:210004282G>A	uc001hhr.1	+	3	358	c.282G>A	c.(280-282)GAG>GAA	p.E94E	C1orf107_uc009xcu.1_5'UTR	NM_014388	NP_055203	Q68CQ4	DIEXF_HUMAN	digestive-organ expansion factor homolog	94	Glu-rich.				multicellular organismal development	nucleus					0				OV - Ovarian serous cystadenocarcinoma(81;0.0367)		aggaggaagaggaagaagaCA	0.338000													35	91					0	0	0.012213	0	0	
KCNK2	3776	broad.mit.edu	37	1	215342563	215342563	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:215342563G>A	uc001hkq.2	+	4	666	c.497G>A	c.(496-498)CGC>CAC	p.R166H	KCNK2_uc001hko.2_Missense_Mutation_p.R162H|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.R151H	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	166							outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	ATCTCACCACGCACAGAAGGC	0.294000													10	78					0	0	0.001368	0	0	
IARS2	55699	broad.mit.edu	37	1	220311323	220311323	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:220311323G>T	uc001hmc.2	+	17	2217	c.2113G>T	c.(2113-2115)GTC>TTC	p.V705F	IARS2_uc001hmd.2_Missense_Mutation_p.V41F	NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	705					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	TGATTCCAATGTCTTCACCGA	0.413000													36	105					1.69901e-12	1.82132e-12	0.005524	1	0	
RAB3GAP2	25782	broad.mit.edu	37	1	220327384	220327384	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:220327384A>G	uc010puk.1	-	32	3735	c.3571T>C	c.(3571-3573)TTC>CTC	p.F1191L	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Missense_Mutation_p.F771L|RAB3GAP2_uc001hmh.2_Missense_Mutation_p.F135L	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	1191					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		AGGTCTTTGAAAAATGCATTT	0.318000													34	112					0	0	0.002836	0	0	
EPHX1	2052	broad.mit.edu	37	1	226032198	226032198	+	Splice_Site	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:226032198G>A	uc001hpk.2	+	8	1121	c.1041_splice	c.e8-1	p.R347_splice	EPHX1_uc001hpl.2_Splice_Site_p.R347_splice	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1						aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					TGCGTTCCCAGGAAGTTCTCC	0.567000													22	57					0	0	0.012319	0	0	
ARF1	375	broad.mit.edu	37	1	228285130	228285130	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:228285130G>A	uc001hrr.2	+	3	464	c.236G>A	c.(235-237)CGC>CAC	p.R79H	ARF1_uc001hrs.2_Missense_Mutation_p.R79H|ARF1_uc001hrt.2_Intron|ARF1_uc009xev.2_Intron|ARF1_uc001hru.2_Missense_Mutation_p.R79H|ARF1_uc001hrv.2_Missense_Mutation_p.R79H|ARF1_uc001hrw.2_Missense_Mutation_p.R79H	NM_001024226	NP_001019397	P84077	ARF1_HUMAN	ADP-ribosylation factor 1	79					cellular copper ion homeostasis|COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|protein transport|regulation of defense response to virus by virus|retrograde vesicle-mediated transport, Golgi to ER|small GTPase mediated signal transduction|viral reproduction	cytosol|Golgi membrane|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity|protein binding|receptor signaling protein activity				0		Prostate(94;0.0405)				CCCCTGTGGCGCCACTACTTC	0.602000													27	64					0	0	0.005443	0	0	
OBSCN	84033	broad.mit.edu	37	1	228538598	228538598	+	Missense_Mutation	SNP	G	A	A	rs151074400	by1000genomes	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:228538598G>A	uc009xez.1	+	77	18417	c.18373G>A	c.(18373-18375)GCC>ACC	p.A6125T	OBSCN_uc001hsn.2_Missense_Mutation_p.A6125T|OBSCN_uc001hsr.1_Missense_Mutation_p.A754T|OBSCN_uc009xfa.2_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	6125	Ig-like 53.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGGAGAGGACGCCCAGTTCAC	0.597000													7	33					0	0	0.004482	0	0	
NUP133	55746	broad.mit.edu	37	1	229619808	229619808	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:229619808A>G	uc001htn.2	-	12	1677	c.1585T>C	c.(1585-1587)TAC>CAC	p.Y529H		NM_018230	NP_060700	Q8WUM0	NU133_HUMAN	nucleoporin 133kDa	529					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			breast(4)|skin(2)|ovary(1)	7	Breast(184;0.104)|Ovarian(103;0.249)	Prostate(94;0.167)				TACCTGCAGTATTGCAGAAAG	0.348000													18	36					0	0	0.006122	0	0	
OR6F1	343169	broad.mit.edu	37	1	247876039	247876039	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:247876039T>C	uc001idj.1	-	1	19	c.19A>G	c.(19-21)ACT>GCT	p.T7A		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TGGGGCAGAGTTTTGTTGCCT	0.448000													57	55					0	0	0.003610	0	0	
IL2RA	3559	broad.mit.edu	37	10	6063591	6063591	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:6063591C>A	uc001iiz.1	-	4	592	c.433G>T	c.(433-435)GGG>TGG	p.G145W	IL2RA_uc009xih.1_Intron|IL2RA_uc001ija.1_Intron	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	145	Sushi 2.|Extracellular (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	ACCATCTGCCCCACCACGAAA	0.512000													29	69					5.60225e-13	6.03387e-13	0.009535	1	0	
PRKCQ	5588	broad.mit.edu	37	10	6472782	6472782	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:6472782C>T	uc001ijj.1	-	17	2030	c.1955G>A	c.(1954-1956)CGG>CAG	p.R652Q	PRKCQ_uc009xim.1_Missense_Mutation_p.R589Q|PRKCQ_uc001iji.1_Missense_Mutation_p.R685Q|PRKCQ_uc009xin.1_Missense_Mutation_p.R616Q|PRKCQ_uc010qax.1_Missense_Mutation_p.R527Q	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	652	AGC-kinase C-terminal.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						CACTTTCGGCCGGAACGGTGG	0.617000													14	51					0	0	0.003163	0	0	
PTER	9317	broad.mit.edu	37	10	16528558	16528558	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:16528558C>T	uc001iog.1	+	4	847	c.640C>T	c.(640-642)CGA>TGA	p.R214*	PTER_uc001ioh.1_Nonsense_Mutation_p.R214*|PTER_uc001ioi.1_Nonsense_Mutation_p.R214*|PTER_uc009xjp.1_Nonsense_Mutation_p.R214*	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	214					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						TCAGATTATCCGAATATTGCA	0.478000													17	62					0	0	0.004007	0	0	
CUBN	8029	broad.mit.edu	37	10	16955916	16955916	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:16955916C>T	uc001ioo.2	-	48	7479	c.7427G>A	c.(7426-7428)CGG>CAG	p.R2476Q		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2476	CUB 18.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTCGCAGATCCGGCCATGAGG	0.532000													12	65					0	0	0.001855	0	0	
KIAA1462	57608	broad.mit.edu	37	10	30315148	30315148	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:30315148C>T	uc001iux.2	-	2	3988	c.3929G>A	c.(3928-3930)CGT>CAT	p.R1310H	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.R1172H|KIAA1462_uc009xle.1_Missense_Mutation_p.R1310H	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1310										ovary(4)	4						TCTCTGGGCACGGTCCCCACT	0.612000													32	70					0	0	0.003271	0	0	
MAP3K8	1326	broad.mit.edu	37	10	30739267	30739267	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:30739267C>T	uc001ivi.1	+	5	1281	c.585C>T	c.(583-585)GGC>GGT	p.G195G	MAP3K8_uc009xlf.1_Silent_p.G195G|MAP3K8_uc001ivj.1_Silent_p.G195G	NM_005204	NP_005195	P41279	M3K8_HUMAN	mitogen-activated protein kinase kinase kinase	195	Protein kinase.				cell cycle|T cell costimulation	cytosol	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			breast(3)|central_nervous_system(1)	4		Prostate(175;0.151)				AGCTGTATGGCGCAGTCCTGT	0.488000													18	43					0	0	0.006122	0	0	
ZNF33B	7582	broad.mit.edu	37	10	43088761	43088761	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:43088761G>A	uc001jaf.1	-	5	1752	c.1637C>T	c.(1636-1638)ACG>ATG	p.T546M	ZNF33B_uc009xmg.1_Intron|ZNF33B_uc001jae.1_Intron|ZNF33B_uc001jag.1_Missense_Mutation_p.T434M|ZNF33B_uc001jad.2_Intron	NM_006955	NP_008886	Q06732	ZN33B_HUMAN	zinc finger protein 33B	546	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCCTGTGTGCGTTCTCTGATG	0.428000													64	112					0	0	0.003610	0	0	
PPYR1	5540	broad.mit.edu	37	10	47087582	47087582	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:47087582C>T	uc001jee.2	+	3	1218	c.799C>T	c.(799-801)CTG>TTG	p.L267L	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.L267L	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	267	Helical; Name=6; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CAATGTGGTGCTGGTGGTGAT	0.602000													11	77					0	0	0.001855	0	0	
Unknown	0	broad.mit.edu	37	10	49239433	49239433	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:49239433G>A	uc001jgd.2	-	1	226	c.67C>T	c.(67-69)CTC>TTC	p.L23F						RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		TGCATGTGGAGGTCCTCACCA	0.582000													6	104					0	0	0.002450	0	0	
LRRTM3	347731	broad.mit.edu	37	10	68687864	68687864	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:68687864C>T	uc001jmz.1	+	2	1740	c.1190C>T	c.(1189-1191)CCG>CTG	p.P397L	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Missense_Mutation_p.P397L	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	397	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CCTTTGCCCCCGACGGTGGGA	0.602000													23	36					0	0	0.002780	0	0	
ADAMTS14	140766	broad.mit.edu	37	10	72511878	72511878	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:72511878G>T	uc001jrh.2	+	18	2624	c.2624G>T	c.(2623-2625)CGG>CTG	p.R875L	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R878L	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	875	TSP type-1 2.|Poly-Arg.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						TACGGCTGCCGGCGCAGACGA	0.667000													10	25					0.00621372	0.00629644	0.006214	1	0	
SGPL1	8879	broad.mit.edu	37	10	72636413	72636413	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:72636413G>T	uc001jrm.2	+	14	1783	c.1561G>T	c.(1561-1563)GGA>TGA	p.G521*	SGPL1_uc009xqk.2_RNA	NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	521	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	GAAGACCACAGGAATGGTAGG	0.358000													33	71					6.90743e-12	7.37007e-12	0.003755	1	0	
UNC5B	219699	broad.mit.edu	37	10	73047450	73047450	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:73047450G>A	uc001jro.2	+	6	1274	c.829G>A	c.(829-831)GCT>ACT	p.A277T	UNC5B_uc001jrp.2_Missense_Mutation_p.A277T	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	277	TSP type-1 1.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CACCAACCCCGCTCCACTCAA	0.662000													19	40					0	0	0.006122	0	0	
CDH23	64072	broad.mit.edu	37	10	73537990	73537990	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:73537990C>T	uc001jrx.3	+	38	5489	c.5112C>T	c.(5110-5112)CAC>CAT	p.H1704H		NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	1704	Cadherin 16.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						AGATCAGCCACGGCCGCTACA	0.607000													11	35					0	0	0.001855	0	0	
PPP3CB	5532	broad.mit.edu	37	10	75239252	75239252	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:75239252G>A	uc001jue.2	-	2	244	c.109C>T	c.(109-111)CGC>TGC	p.R37C	PPP3CB_uc001juf.2_Missense_Mutation_p.R37C|PPP3CB_uc001jug.2_Missense_Mutation_p.R37C|PPP3CB_uc001jui.2_Missense_Mutation_p.R37C|PPP3CB_uc001juh.2_5'UTR	NM_021132	NP_066955	P16298	PP2BB_HUMAN	protein phosphatase 3, catalytic subunit, beta	37	Catalytic.									skin(1)	1	Prostate(51;0.0119)					GATGTCAAGCGATGTGTTGGG	0.358000													23	85					0	0	0.002780	0	0	
USP54	159195	broad.mit.edu	37	10	75276308	75276308	+	Silent	SNP	C	T	T	rs138689241		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:75276308C>T	uc001juo.2	-	18	3893	c.3876G>A	c.(3874-3876)ACG>ACA	p.T1292T	USP54_uc010qkk.1_Silent_p.T474T|USP54_uc001juk.2_Silent_p.T380T|USP54_uc001jul.2_Silent_p.T380T|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1292					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					AGGTTACACACGTATGGGAAT	0.478000													31	74					0	0	0.010818	0	0	
SYNPO2L	79933	broad.mit.edu	37	10	75407549	75407549	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:75407549T>C	uc001jut.3	-	4	2013	c.1861A>G	c.(1861-1863)ACG>GCG	p.T621A	SYNPO2L_uc001jus.3_Missense_Mutation_p.T397A	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	621	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					AGGATACCCGTGCGGGCAGCT	0.711000													21	58					0	0	0.005443	0	0	
DLG5	9231	broad.mit.edu	37	10	79579711	79579711	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:79579711C>T	uc001jzk.2	-	16	3538	c.3468G>A	c.(3466-3468)TCG>TCA	p.S1156S	DLG5_uc001jzi.2_5'UTR|DLG5_uc001jzj.2_Silent_p.S571S|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Silent_p.S760S	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1156					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			AATGCCCAGGCGAGTAAGGTG	0.627000													28	75					0	0	0.008361	0	0	
DYDC2	84332	broad.mit.edu	37	10	82122250	82122250	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:82122250A>G	uc001kca.1	+	3	431	c.51A>G	c.(49-51)GCA>GCG	p.A17A	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Silent_p.A17A	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	17							protein binding				0			Colorectal(32;0.229)			TGGCCCAGGCACTGGCAGAGG	0.463000													16	42					0	0	0.003163	0	0	
DYDC2	84332	broad.mit.edu	37	10	82126484	82126484	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:82126484T>G	uc001kca.1	+	5	691	c.311T>G	c.(310-312)TTC>TGC	p.F104C	DYDC2_uc001kbz.1_RNA|DYDC2_uc001kcb.1_Missense_Mutation_p.F104C	NM_032372	NP_115748	Q96IM9	DYDC2_HUMAN	DPY30 domain containing 2	104							protein binding				0			Colorectal(32;0.229)			AAGACCATATTCATGCAGGAG	0.428000													39	125					0	0	0.006230	0	0	
FAM190B	54462	broad.mit.edu	37	10	86132141	86132141	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:86132141C>T	uc001kdh.1	+	2	1527	c.1333C>T	c.(1333-1335)CCA>TCA	p.P445S	FAM190B_uc001kdg.1_Missense_Mutation_p.P445S|FAM190B_uc010qmd.1_Missense_Mutation_p.P445S	NM_018999	NP_061872	Q9H7U1	F190B_HUMAN	granule cell antiserum positive 14	445										ovary(3)|skin(1)	4						TGAAAATGGGCCACCACAGGA	0.353000													58	73					0	0	0.003610	0	0	
GRID1	2894	broad.mit.edu	37	10	87406989	87406989	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:87406989G>A	uc001kdl.1	-	13	2264	c.2163C>T	c.(2161-2163)TGC>TGT	p.C721C	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.C292C|uc001kdm.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	721	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GACTGGACACGCAGTTGTCAG	0.617000										Multiple Myeloma(13;0.14)			69	166					0	0	0.003610	0	0	
HTR7	3363	broad.mit.edu	37	10	92508761	92508761	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:92508761G>A	uc001kha.2	-	2	1373	c.1130C>T	c.(1129-1131)TCT>TTT	p.S377F	HTR7_uc001kgz.2_Missense_Mutation_p.S377F|HTR7_uc001khb.2_Missense_Mutation_p.S377F	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	377	Helical; Name=7; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	GTTAATGAGAGAGTTTGCATA	0.532000													40	97					0	0	0.005524	0	0	
CYP26A1	1592	broad.mit.edu	37	10	94834167	94834167	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:94834167C>T	uc001kil.2	+	2	337	c.292C>T	c.(292-294)CGG>TGG	p.R98W	CYP26A1_uc001kik.1_Missense_Mutation_p.R29W|CYP26A1_uc001kim.1_Silent_p.C2C	NM_000783	NP_000774	O43174	CP26A_HUMAN	cytochrome P450, family 26, subfamily A,	98					negative regulation of retinoic acid receptor signaling pathway|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|oxygen binding|retinoic acid 4-hydroxylase activity|retinoic acid binding	p.W98*(1)		upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		Colorectal(252;0.122)				GGACAATGTGCGGCGCATCTT	0.617000													26	141					0	0	0.009535	0	0	
PLCE1	51196	broad.mit.edu	37	10	95791574	95791574	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:95791574C>T	uc001kjk.2	+	2	1405	c.771C>T	c.(769-771)GAC>GAT	p.D257D	PLCE1_uc010qnx.1_Silent_p.D257D	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	257					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity	p.D257D(1)		ovary(2)|skin(1)	3		Colorectal(252;0.0458)				ATCATTGTGACACCTTGAATG	0.368000													26	57					0	0	0.003954	0	0	
DHDPSL	112817	broad.mit.edu	37	10	99371277	99371277	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:99371277G>A	uc001kny.2	+	7	1204	c.845G>A	c.(844-846)CGC>CAC	p.R282H	DHDPSL_uc001knz.2_Missense_Mutation_p.R119H|PI4K2A_uc010qoy.1_Intron	NM_138413	NP_612422	Q86XE5	HOGA1_HUMAN	DHDPS-like protein isoform 1	282					glyoxylate catabolic process	mitochondrion	4-hydroxy-2-oxoglutarate aldolase activity				0						GTGACCCGGCGCTTTGGGATC	0.552000													16	35					0	0	0.004007	0	0	
CWF19L1	55280	broad.mit.edu	37	10	101996719	101996719	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:101996719G>T	uc001kqq.1	-	12	1349	c.1262C>A	c.(1261-1263)CCT>CAT	p.P421H	CWF19L1_uc001kqs.1_Missense_Mutation_p.P173H|CWF19L1_uc001kqr.1_Intron|CWF19L1_uc001kqt.1_Missense_Mutation_p.P125H|CWF19L1_uc010qpn.1_Missense_Mutation_p.P284H	NM_018294	NP_060764	Q69YN2	C19L1_HUMAN	CWF19-like 1, cell cycle control	421							catalytic activity				0		Colorectal(252;0.117)		Epithelial(162;3.78e-10)|all cancers(201;3.1e-08)		GATTGGGACAGGAATGACCTG	0.507000													26	107					6.32553e-13	6.80218e-13	0.004656	1	0	
POLL	27343	broad.mit.edu	37	10	103342587	103342587	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:103342587C>T	uc001ktg.1	-	6	1893	c.1127G>A	c.(1126-1128)GGC>GAC	p.G376D	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_Missense_Mutation_p.G49D|POLL_uc001kte.1_Missense_Mutation_p.G68D|POLL_uc001kth.1_Missense_Mutation_p.G101D|POLL_uc001kti.1_Missense_Mutation_p.G376D|POLL_uc001ktj.1_Missense_Mutation_p.G376D|POLL_uc001ktf.2_Missense_Mutation_p.G284D|POLL_uc001ktk.1_Missense_Mutation_p.G115D|POLL_uc010qqa.1_Missense_Mutation_p.G115D|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Missense_Mutation_p.G376D|POLL_uc001ktl.2_Missense_Mutation_p.G288D|POLL_uc010qqc.1_Missense_Mutation_p.G68D	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	376					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		ATGCTTCAGGCCGATGGCCTG	0.567000								DNA_polymerases_(catalytic_subunits)					21	68					0	0	0.012319	0	0	
C10orf76	79591	broad.mit.edu	37	10	103716445	103716445	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:103716445G>A	uc009xwy.1	-	22	1716	c.1614C>T	c.(1612-1614)GGC>GGT	p.G538G	C10orf76_uc009xwx.1_RNA	NM_024541	NP_078817	Q5T2E6	CJ076_HUMAN	hypothetical protein LOC79591	538	Helical; (Potential).					integral to membrane					0		Colorectal(252;0.123)		Epithelial(162;2.41e-08)|all cancers(201;6.41e-07)		GAAATGTGTCGCCATATGTGA	0.383000													18	30					0	0	0.007413	0	0	
ACTR1A	10121	broad.mit.edu	37	10	104248022	104248022	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:104248022C>T	uc001kvv.2	-	4	308	c.200G>A	c.(199-201)GGG>GAG	p.G67E	ACTR1A_uc010qqn.1_5'UTR|ACTR1A_uc010qqo.1_Missense_Mutation_p.G20E	NM_005736	NP_005727	P61163	ACTZ_HUMAN	ARP1 actin-related protein 1 homolog A,	67					G2/M transition of mitotic cell cycle|vesicle-mediated transport	centrosome|cytosol|dynactin complex	ATP binding			central_nervous_system(1)	1		Colorectal(252;0.122)		Epithelial(162;5.34e-09)|all cancers(201;1.43e-07)|BRCA - Breast invasive adenocarcinoma(275;0.222)		TGAAAGCAGCCCTCGGTGCTC	0.522000													16	58					0	0	0.004007	0	0	
CALHM2	51063	broad.mit.edu	37	10	105209370	105209370	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:105209370G>A	uc001kwz.2	-	2	715	c.329C>T	c.(328-330)GCG>GTG	p.A110V	CALHM2_uc001kxa.2_Missense_Mutation_p.A110V|CALHM2_uc001kxc.2_Missense_Mutation_p.A110V|CALHM2_uc001kxb.2_Missense_Mutation_p.A110V|CALHM2_uc001kxd.1_Missense_Mutation_p.A110V	NM_015916	NP_057000	Q9HA72	CAHM2_HUMAN	calcium homeostasis modulator 2	110	Helical; (Potential).					integral to membrane				skin(1)	1						GGCCACAGCCGCACGTCCCAG	0.627000													26	51					0	0	0.005443	0	0	
ADRA2A	150	broad.mit.edu	37	10	112838242	112838242	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:112838242G>A	uc001kzo.2	+	1	1453	c.488G>A	c.(487-489)CGC>CAC	p.R163H		NM_000681	NP_000672	P08913	ADA2A_HUMAN	alpha-2A-adrenergic receptor	148	Cytoplasmic (By similarity).				actin cytoskeleton organization|activation of MAPK activity by adrenergic receptor signaling pathway|activation of phospholipase C activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cellular component movement|cellular response to hormone stimulus|energy reserve metabolic process|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|glucose homeostasis|inhibition of adenylate cyclase activity by adrenergic receptor signaling pathway|intestinal absorption|negative regulation of adrenergic receptor signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cAMP biosynthetic process|negative regulation of epinephrine secretion|negative regulation of insulin secretion involved in cellular response to glucose stimulus|negative regulation of lipid catabolic process|negative regulation of norepinephrine secretion|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine production|positive regulation of membrane protein ectodomain proteolysis|positive regulation of potassium ion transport|positive regulation of wound healing|Rho protein signal transduction	basolateral plasma membrane|cytoplasm|integral to plasma membrane|receptor complex	alpha-1B adrenergic receptor binding|alpha-2C adrenergic receptor binding|alpha2-adrenergic receptor activity|epinephrine binding|heterotrimeric G-protein binding|norepinephrine binding|protein heterodimerization activity|protein homodimerization activity|protein kinase binding|thioesterase binding				0		Breast(234;0.0735)|Lung NSC(174;0.238)		Epithelial(162;0.000316)|all cancers(201;0.00501)|BRCA - Breast invasive adenocarcinoma(275;0.118)	Amitriptyline(DB00321)|Amphetamine(DB00182)|Apraclonidine(DB00964)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Brimonidine(DB00484)|Clonidine(DB00575)|Debrisoquin(DB04840)|Dexmedetomidine(DB00633)|Dipivefrin(DB00449)|Epinastine(DB00751)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanabenz(DB00629)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Lofexidine(DB04948)|Methyldopa(DB00968)|Mianserin(DB06148)|Mirtazapine(DB00370)|Norepinephrine(DB00368)|Oxymetazoline(DB00935)|Phentolamine(DB00692)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Tizanidine(DB00697)|Trazodone(DB00656)|Yohimbine(DB01392)	CGCACGCCGCGCCGCATCAAG	0.547000													12	23					0	0	0.001855	0	0	
EIF3A	8661	broad.mit.edu	37	10	120801712	120801712	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:120801712C>T	uc001ldu.2	-	19	3466	c.3320G>A	c.(3319-3321)CGG>CAG	p.R1107Q	EIF3A_uc010qsu.1_Missense_Mutation_p.R1073Q|EIF3A_uc009xzg.1_Missense_Mutation_p.R146Q	NM_003750	NP_003741	Q14152	EIF3A_HUMAN	eukaryotic translation initiation factor 3,	1107	Asp-rich.|25 X 10 AA approximate tandem repeats of [DE]-[DE]-[DE]-R-[SEVGFPILV]-[HPSN]- [RSW]-[RL]-[DRGTIHN]-[EPMANLGDT].|19.				formation of translation initiation complex	cytosol|eukaryotic translation initiation factor 3 complex	protein binding|structural molecule activity|translation initiation factor activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0236)		CCTGGGACCCCGGTCATCATC	0.627000													43	108					0	0	0.013114	0	0	
CHST15	51363	broad.mit.edu	37	10	125805494	125805494	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:125805494G>A	uc001lhl.2	-	1	748	c.235C>T	c.(235-237)CGA>TGA	p.R79*	CHST15_uc001lhm.2_Nonsense_Mutation_p.R79*|CHST15_uc001lhn.2_Nonsense_Mutation_p.R79*|CHST15_uc010que.1_Nonsense_Mutation_p.R79*|CHST15_uc001lho.2_Nonsense_Mutation_p.R79*	NM_015892	NP_056976	Q7LFX5	CHSTF_HUMAN	B cell RAG associated protein	79	Cytoplasmic (Potential).				hexose biosynthetic process	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity			ovary(1)	1						AGGCTACATCGCTTCCCCTTT	0.473000													23	44					0	0	0.002780	0	0	
OAT	4942	broad.mit.edu	37	10	126097148	126097148	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:126097148C>T	uc001lhp.2	-	4	590	c.483G>A	c.(481-483)AAG>AAA	p.K161K	OAT_uc001lhq.2_RNA|OAT_uc001lhr.2_Silent_p.K23K	NM_000274	NP_000265	P04181	OAT_HUMAN	ornithine aminotransferase precursor	161					cellular amino acid biosynthetic process|visual perception	mitochondrial matrix	ornithine-oxo-acid transaminase activity|protein binding|pyridoxal phosphate binding				0		all_lung(145;0.0271)|Lung NSC(174;0.0436)|Colorectal(57;0.102)|all_neural(114;0.116)			L-Ornithine(DB00129)|Pyridoxal Phosphate(DB00114)	TCTGAATGCCCTTCACGGTAT	0.328000													18	49					0	0	0.008871	0	0	
CEND1	51286	broad.mit.edu	37	11	788426	788426	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:788426G>A	uc001lrh.1	-	2	330	c.151C>T	c.(151-153)CCG>TCG	p.P51S		NM_016564	NP_057648	Q8N111	CEND_HUMAN	cell cycle exit and neuronal differentiation 1	51	Cytoplasmic (Potential).					integral to membrane					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;6.27e-26)|Epithelial(43;4.84e-25)|OV - Ovarian serous cystadenocarcinoma(40;2.72e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCTGCTGGCGGCTGCTGCTTC	0.682000													22	48					0	0	0.012319	0	0	
OR51D1	390038	broad.mit.edu	37	11	4661386	4661386	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:4661386C>T	uc010qyk.1	+	1	366	c.366C>T	c.(364-366)GCC>GCT	p.A122A		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	122	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCTGTCAGCCGTGGAGTCAG	0.552000													16	42					0	0	0.004990	0	0	
OR51Q1	390061	broad.mit.edu	37	11	5443929	5443929	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:5443929C>T	uc010qzd.1	+	1	499	c.499C>T	c.(499-501)CGA>TGA	p.R167*	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTACTCAAGCGACTGCCTTT	0.517000													24	149					0	0	0.003271	0	0	
OR52N2	390077	broad.mit.edu	37	11	5842064	5842064	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:5842064C>T	uc010qzp.1	+	1	499	c.499C>T	c.(499-501)CGC>TGC	p.R167C	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTCACCAAGCGCCTGCCCTA	0.517000													38	108					0	0	0.004289	0	0	
DNHD1	144132	broad.mit.edu	37	11	6520071	6520071	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:6520071C>T	uc001mdw.3	+	3	1190	c.626C>T	c.(625-627)GCT>GTT	p.A209V	DNHD1_uc001mdp.2_Missense_Mutation_p.A209V	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	209					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CTAGAAGAGGCTGTGTGGCTG	0.577000													33	51					0	0	0.012213	0	0	
RRP8	23378	broad.mit.edu	37	11	6622758	6622758	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:6622758G>A	uc001med.2	-	3	617	c.538C>T	c.(538-540)CCT>TCT	p.P180S	ILK_uc001mee.2_5'Flank|ILK_uc001mef.2_5'Flank|ILK_uc010rap.1_5'Flank|ILK_uc010raq.1_5'Flank|ILK_uc001meg.2_5'Flank|ILK_uc001meh.2_5'Flank	NM_015324	NP_056139	O43159	RRP8_HUMAN	ribosomal RNA processing 8, methyltransferase,	180					chromatin modification|chromatin silencing at rDNA|rRNA processing|transcription, DNA-dependent	chromatin silencing complex|nucleolus|rDNA heterochromatin	methylated histone residue binding|S-adenosylmethionine-dependent methyltransferase activity				0						AATGTATGAGGGGGTTTAGGG	0.542000													17	76					0	0	0.004007	0	0	
SYT9	143425	broad.mit.edu	37	11	7324372	7324372	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:7324372G>A	uc001mfe.2	+	2	485	c.248G>A	c.(247-249)CGA>CAA	p.R83Q	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	83	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GTTCCGTGGCGAGAACGAGGC	0.542000													36	74					0	0	0.003755	0	0	
OR5P3	120066	broad.mit.edu	37	11	7847414	7847414	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:7847414C>T	uc010rbg.1	-	1	106	c.106G>A	c.(106-108)GTT>ATT	p.V36I		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AAGGTGACAACATAAATTCCT	0.368000													22	66					0	0	0.010504	0	0	
MICAL2	9645	broad.mit.edu	37	11	12246337	12246337	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:12246337C>T	uc001mjz.2	+	13	1946	c.1658C>T	c.(1657-1659)GCC>GTC	p.A553V	MICAL2_uc010rch.1_Missense_Mutation_p.A553V|MICAL2_uc001mka.2_Missense_Mutation_p.A553V|MICAL2_uc010rci.1_Missense_Mutation_p.A553V|MICAL2_uc001mkb.2_Missense_Mutation_p.A553V|MICAL2_uc001mkc.2_Missense_Mutation_p.A553V|MICAL2_uc001mkd.2_Missense_Mutation_p.A382V|MICAL2_uc010rcj.1_5'UTR	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	553	CH.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GCCCTGTGTGCCATCATCCAC	0.622000													17	26					0	0	0.007413	0	0	
NAV2	89797	broad.mit.edu	37	11	20099098	20099098	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:20099098G>A	uc010rdm.1	+	25	5513	c.5152G>A	c.(5152-5154)GCT>ACT	p.A1718T	NAV2_uc001mpp.2_Missense_Mutation_p.A1598T|NAV2_uc001mpr.3_Missense_Mutation_p.A1662T|NAV2_uc001mpt.2_Missense_Mutation_p.A711T|NAV2_uc009yhx.2_Missense_Mutation_p.A726T|NAV2_uc009yhy.1_Missense_Mutation_p.A624T|NAV2_uc009yhz.2_Missense_Mutation_p.A307T|NAV2_uc001mpu.2_Missense_Mutation_p.A100T	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1718	Potential.					nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TCCCCTCCAGGCTCACCTTGT	0.468000													15	47					0	0	0.004007	0	0	
C11orf46	120534	broad.mit.edu	37	11	30358285	30358285	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:30358285G>A	uc001mso.1	+	4	890	c.726G>A	c.(724-726)CTG>CTA	p.L242L	C11orf46_uc001msp.2_5'Flank	NM_152316	NP_689529	Q8N8R7	CK046_HUMAN	hypothetical protein LOC120534	242											0						GCAAGTGGCTGTATGAGCAAA	0.433000													40	81					0	0	0.006999	0	0	
PTPMT1	114971	broad.mit.edu	37	11	47593071	47593071	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:47593071C>T	uc001nfs.3	+	4	689	c.496C>T	c.(496-498)CGG>TGG	p.R166W	PTPMT1_uc001nfv.3_Missense_Mutation_p.P138L|PTPMT1_uc009ylt.2_Missense_Mutation_p.R102W|PTPMT1_uc001nfu.3_3'UTR|NDUFS3_uc001nft.3_5'UTR	NM_175732	NP_783859	Q8WUK0	PTPM1_HUMAN	protein tyrosine phosphatase, mitochondrial 1	166	Tyrosine-protein phosphatase.				inositol phosphate dephosphorylation	mitochondrial inner membrane	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(1)	1						CGCCAAGATCCGGTCATACAT	0.493000													26	58					0	0	0.003330	0	0	
OR4C13	283092	broad.mit.edu	37	11	49974661	49974661	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:49974661G>T	uc010rhz.1	+	1	687	c.687G>T	c.(685-687)GAG>GAT	p.E229D		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						ACAGCTTAGAGGCAAGGCACG	0.478000													41	94					9.73076e-26	1.09451e-25	0.006999	1	0	
OR5F1	338674	broad.mit.edu	37	11	55762042	55762042	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:55762042C>T	uc010riv.1	-	1	60	c.60G>A	c.(58-60)ACG>ACA	p.T20T		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					GTAGCTCCAGCGTGTCTGCTA	0.363000													13	64					0	0	0.004007	0	0	
P2RX3	5024	broad.mit.edu	37	11	57118321	57118321	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:57118321G>A	uc001nju.2	+	8	867	c.791G>A	c.(790-792)CGG>CAG	p.R264Q		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	264	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						TCCTTCACCCGGCTCGACAGC	0.572000													24	38					0	0	0.003330	0	0	
PRPF19	27339	broad.mit.edu	37	11	60666067	60666067	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:60666067T>C	uc001nqf.2	-	13	1293	c.1086A>G	c.(1084-1086)GGA>GGG	p.G362G		NM_014502	NP_055317	Q9UMS4	PRP19_HUMAN	PRP19/PSO4 pre-mRNA processing factor 19	362	WD 4.				DNA repair|protein polyubiquitination|spliceosome assembly	catalytic step 2 spliceosome|nuclear speck|spindle|ubiquitin ligase complex	DNA binding|identical protein binding|ubiquitin-ubiquitin ligase activity			ovary(1)	1						CAAAGATGAGTCCGTCAGGGT	0.557000													17	45					0	0	0.004990	0	0	
SYT7	9066	broad.mit.edu	37	11	61290643	61290643	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:61290643G>A	uc001nrv.2	-	8	1017	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	SYT7_uc009ynr.2_Silent_p.F412F	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	337	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						TATCGAAGGCGAAGGACTCAT	0.527000													25	71					0	0	0.003954	0	0	
FADS2	9415	broad.mit.edu	37	11	61624930	61624930	+	Silent	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:61624930G>C	uc001nsl.1	+	7	960	c.810G>C	c.(808-810)GGG>GGC	p.G270G	FADS2_uc001nsj.2_Silent_p.G248G|FADS2_uc010rlo.1_Silent_p.G239G|FADS2_uc001nsk.2_Silent_p.G270G	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	270	Helical; (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CTGCAGTTGGGCCGCCGCTGC	0.592000													20	40					0	0	0.002780	0	0	
SLC22A12	116085	broad.mit.edu	37	11	64359362	64359362	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:64359362G>A	uc001oam.1	+	1	1081	c.334G>A	c.(334-336)GAC>AAC	p.D112N	SLC22A12_uc009ypr.1_Missense_Mutation_p.D112N|SLC22A12_uc001oal.1_5'UTR|SLC22A12_uc009yps.1_Missense_Mutation_p.D112N|SLC22A12_uc001oan.1_Missense_Mutation_p.D112N|SLC22A12_uc009ypt.2_5'Flank	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	112					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GAGCGAGGCCGACACGGAGCC	0.677000													16	15					0	0	0.004990	0	0	
SNX32	254122	broad.mit.edu	37	11	65617684	65617684	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:65617684G>A	uc001ofr.2	+	4	443	c.316G>A	c.(316-318)GAG>AAG	p.E106K	SNX32_uc009yqt.2_3'UTR|SNX32_uc010rop.1_Silent_p.A145A	NM_152760	NP_689973	Q86XE0	SNX32_HUMAN	sorting nexin 6B	106	PX.				cell communication|protein transport		phosphatidylinositol binding				0				READ - Rectum adenocarcinoma(159;0.171)		GAAATTGGGCGAGGGGGACAG	0.602000													21	43					0	0	0.008871	0	0	
ADRBK1	156	broad.mit.edu	37	11	67051203	67051203	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:67051203T>C	uc009yrn.1	+	16	1620	c.1354T>C	c.(1354-1356)TTT>CTT	p.F452L	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	452	Protein kinase.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	AGAGAGCCCCTTTTTCCGCTC	0.532000													18	45					0	0	0.007413	0	0	
ODZ4	26011	broad.mit.edu	37	11	78440668	78440668	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:78440668A>G	uc001ozl.3	-	22	3622	c.3159T>C	c.(3157-3159)TCT>TCC	p.S1053S		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1053	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AGCCAGAGATAGAGATTTCCT	0.582000													27	52					0	0	0.008361	0	0	
FZD4	8322	broad.mit.edu	37	11	86662733	86662733	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:86662733G>A	uc001pce.2	-	2	1371	c.1065C>T	c.(1063-1065)CCC>CCT	p.P355P	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	355	Helical; Name=4; (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTTTCACTGCGGGGATGGCCC	0.478000													18	50					0	0	0.006122	0	0	
CCDC67	159989	broad.mit.edu	37	11	93088580	93088580	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:93088580A>G	uc001pdq.2	+	3	173	c.73A>G	c.(73-75)ATT>GTT	p.I25V	CCDC67_uc001pdo.1_Missense_Mutation_p.I25V|CCDC67_uc001pdp.2_Missense_Mutation_p.I25V	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	25	Potential.									ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				AATGGAACAAATTGACATCAT	0.388000													5	79					0	0	0.000602	0	0	
FOLR4	390243	broad.mit.edu	37	11	94040602	94040602	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:94040602G>T	uc010rud.1	+	4	476	c.476G>T	c.(475-477)TGC>TTC	p.C159F		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	166						extracellular region	folic acid binding|receptor activity			ovary(1)	1						AAGAACCGCTGCCCCAAAGGG	0.597000													22	37					1.28384e-07	1.33855e-07	0.012319	1	0	
CASP5	838	broad.mit.edu	37	11	104872817	104872817	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:104872817T>C	uc010rva.1	-	5	687	c.655A>G	c.(655-657)ATG>GTG	p.M219V	CASP5_uc010ruz.1_Missense_Mutation_p.M232V|CASP5_uc010rvb.1_Missense_Mutation_p.M161V|CASP5_uc010rvc.1_Missense_Mutation_p.M77V|CASP5_uc009yxh.2_Missense_Mutation_p.M1V|CASP5_uc010rvd.1_Missense_Mutation_p.M1V	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	219					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		AGCCTTTTCATCCCCACGATG	0.502000													19	64					0	0	0.007413	0	0	
KBTBD3	143879	broad.mit.edu	37	11	105924527	105924527	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:105924527T>C	uc001pja.2	-	4	1529	c.889A>G	c.(889-891)ATA>GTA	p.I297V	KBTBD3_uc001pjb.2_Missense_Mutation_p.I297V|KBTBD3_uc009yxm.2_Missense_Mutation_p.I218V	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	293	Kelch 1.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		TGAATGAATATGTATTTCTCA	0.368000													27	59					0	0	0.005443	0	0	
SIK2	23235	broad.mit.edu	37	11	111594498	111594498	+	Missense_Mutation	SNP	G	A	A	rs34223841	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:111594498G>A	uc001plt.2	+	15	2544	c.2426G>A	c.(2425-2427)CGG>CAG	p.R809Q		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	809					intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						TCCGGTCCCCGGGCTGCTCCT	0.522000													43	100					0	0	0.011902	0	0	
BCO2	83875	broad.mit.edu	37	11	112064635	112064635	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:112064635G>A	uc001pnf.2	+	4	668	c.551G>A	c.(550-552)CGG>CAG	p.R184Q	BCO2_uc001pne.1_Missense_Mutation_p.R11Q|BCO2_uc001png.2_Intron|BCO2_uc001pnh.2_Missense_Mutation_p.R150Q|BCO2_uc010rwt.1_Missense_Mutation_p.R79Q|BCO2_uc009yyn.2_Missense_Mutation_p.R150Q|BCO2_uc001pni.2_Missense_Mutation_p.R150Q	NM_031938	NP_114144	Q9BYV7	BCDO2_HUMAN	beta-carotene dioxygenase 2 isoform a	184					carotene metabolic process|retinal metabolic process|retinoic acid metabolic process		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						AACTATGTGCGGTACAAGGGT	0.393000													25	75					0	0	0.003954	0	0	
USP2	9099	broad.mit.edu	37	11	119230349	119230349	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:119230349G>A	uc001pwm.3	-	4	1142	c.847C>T	c.(847-849)CAG>TAG	p.Q283*	USP2_uc001pwl.3_Nonsense_Mutation_p.Q74*|USP2_uc001pwn.3_Nonsense_Mutation_p.Q40*	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	283					cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		CTCAGGCACTGCAGAATTGAG	0.547000													14	35					0	0	0.003163	0	0	
TRIM29	23650	broad.mit.edu	37	11	120008124	120008124	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:120008124C>T	uc001pwz.2	-	1	740	c.616G>A	c.(616-618)GCC>ACC	p.A206T	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	206					transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		CGGAAGGCGGCGCCCTCCAGG	0.642000													10	26					0	0	0.006214	0	0	
TECTA	7007	broad.mit.edu	37	11	120980130	120980130	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:120980130G>A	uc010rzo.1	+	3	409	c.409G>A	c.(409-411)GCA>ACA	p.A137T		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	137	NIDO.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CAAAGACATGGCAACCTTCTC	0.458000													18	45					0	0	0.004990	0	0	
SORL1	6653	broad.mit.edu	37	11	121393349	121393349	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:121393349C>A	uc001pxx.2	+	10	1539	c.1459C>A	c.(1459-1461)CTC>ATC	p.L487I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	487	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GCTCCTCAACCTCCAGCTCCG	0.552000													44	98					3.54909e-21	3.97893e-21	0.011902	1	0	
ROBO3	64221	broad.mit.edu	37	11	124742441	124742441	+	Silent	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:124742441A>C	uc001qbc.2	+	8	1515	c.1323A>C	c.(1321-1323)ATA>ATC	p.I441I		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	441	Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		TGCTGGAGATAAAAGGAGGTA	0.527000													11	31					0	0	0.008291	0	0	
VPS26B	112936	broad.mit.edu	37	11	134109914	134109914	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:134109914G>A	uc001qhe.2	+	3	866	c.410G>A	c.(409-411)CGC>CAC	p.R137H		NM_052875	NP_443107	Q4G0F5	VP26B_HUMAN	vacuolar protein sorting 26 homolog B	137					protein transport|vacuolar transport	cytosol|retromer complex					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;2.43e-10)|all cancers(11;2.94e-09)|BRCA - Breast invasive adenocarcinoma(10;9.57e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00164)|Lung(977;0.216)		ATCAGCCGCCGCCTCAATGAT	0.468000													17	47					0	0	0.004990	0	0	
CACNA2D4	93589	broad.mit.edu	37	12	1992068	1992068	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:1992068C>T	uc001qjp.2	-	13	1681	c.1450G>A	c.(1450-1452)GAC>AAC	p.D484N	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.D372N	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	484	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CAGATGATGTCGTGGTCGTGG	0.592000													4	16					0	0	0.009096	0	0	
KCNA1	3736	broad.mit.edu	37	12	5021641	5021641	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:5021641C>T	uc001qnh.2	+	2	2202	c.1097C>T	c.(1096-1098)GCG>GTG	p.A366V		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	366					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TTCTGGTGGGCGGTGGTGTCC	0.542000													34	191					0	0	0.012213	0	0	
KCNA1	3736	broad.mit.edu	37	12	5021769	5021769	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:5021769T>A	uc001qnh.2	+	2	2330	c.1225T>A	c.(1225-1227)TCC>ACC	p.S409T		NM_000217	NP_000208	Q09470	KCNA1_HUMAN	potassium voltage-gated channel subfamily A	409					synaptic transmission	juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium ion transmembrane transporter activity			ovary(1)|skin(1)	2					Desflurane(DB01189)|Enflurane(DB00228)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TGTCATTGTGTCCAATTTCAA	0.527000													91	239					0	0	0.003610	0	0	
CHD4	1108	broad.mit.edu	37	12	6687228	6687228	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:6687228C>A	uc001qpo.2	-	36	5359	c.5195G>T	c.(5194-5196)CGG>CTG	p.R1732L	CHD4_uc001qpn.2_Missense_Mutation_p.R1725L|CHD4_uc001qpp.2_Missense_Mutation_p.R1757L|uc001qpq.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1732	Required for interaction with PCNT.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						GTAGTCATGCCGTCGATGCCA	0.473000													30	91					1.55811e-20	1.74112e-20	0.008361	1	0	
CHD4	1108	broad.mit.edu	37	12	6692034	6692034	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:6692034G>A	uc001qpo.2	-	28	4380	c.4216C>T	c.(4216-4218)CGT>TGT	p.R1406C	CHD4_uc001qpn.2_Missense_Mutation_p.R1399C|CHD4_uc001qpp.2_Missense_Mutation_p.R1431C|uc001qpq.1_Silent_p.T79T|SCARNA11_uc001qpr.1_5'Flank	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	1406					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						CCACCAACACGGGCCAACAGA	0.498000													44	115					0	0	0.011902	0	0	
GDF3	9573	broad.mit.edu	37	12	7842978	7842978	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:7842978A>T	uc001qte.2	-	2	627	c.591T>A	c.(589-591)AAT>AAA	p.N197K		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	197					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						ATAACCCGAAATTTTTCCGGG	0.473000													20	61					0	0	0.002299	0	0	
TAS2R10	50839	broad.mit.edu	37	12	10978047	10978047	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:10978047T>G	uc001qyy.1	-	1	822	c.822A>C	c.(820-822)TCA>TCC	p.S274S		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	274	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						TTAAGATAAATGAGTGACCCC	0.413000													29	80					0	0	0.007291	0	0	
PDE3A	5139	broad.mit.edu	37	12	20766597	20766597	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:20766597A>T	uc001reh.1	+	3	1254	c.1232A>T	c.(1231-1233)GAA>GTA	p.E411V		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	411					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TCTGACTCTGAAGAGAGCTCT	0.428000													16	49					0	0	0.004007	0	0	
ABCC9	10060	broad.mit.edu	37	12	22035805	22035805	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:22035805C>A	uc001rfi.1	-	14	1934	c.1914G>T	c.(1912-1914)CAG>CAT	p.Q638H	ABCC9_uc001rfh.2_Missense_Mutation_p.Q638H|ABCC9_uc001rfj.1_Intron	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	638	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TAGTTTTTGGCTGCTGCATTC	0.403000													31	64					3.99451e-17	4.40618e-17	0.009535	1	0	
IFLTD1	160492	broad.mit.edu	37	12	25671789	25671789	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:25671789C>T	uc001rgs.2	-	7	1216	c.1066G>A	c.(1066-1068)GCT>ACT	p.A356T	IFLTD1_uc001rgt.1_Missense_Mutation_p.A259T|IFLTD1_uc010sji.1_Missense_Mutation_p.A377T|IFLTD1_uc010sjj.1_Missense_Mutation_p.A293T|IFLTD1_uc009zjc.2_Missense_Mutation_p.A337T	NM_152590	NP_689803	Q8N9Z9	ILFT1_HUMAN	intermediate filament tail domain containing 1	356						intermediate filament	structural molecule activity			ovary(2)|central_nervous_system(1)	3	all_lung(3;2.75e-22)|Lung NSC(3;1.77e-21)|all_hematologic(7;0.00656)|Colorectal(261;0.0847)					CTGCCTCCAGCGGTGGATGTA	0.522000											OREG0031252	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	30	80					0	0	0.008361	0	0	
ARID2	196528	broad.mit.edu	37	12	46245344	46245344	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:46245344G>A	uc001ros.1	+	15	3438	c.3438G>A	c.(3436-3438)TCG>TCA	p.S1146S	ARID2_uc001ror.2_Silent_p.S1146S|ARID2_uc009zkg.1_Silent_p.S602S|ARID2_uc009zkh.1_Silent_p.S773S|ARID2_uc001rou.1_Silent_p.S480S	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1146					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TGCCCATTTCGAACTTACAAA	0.483000													27	68					0	0	0.005443	0	0	
GPD1	2819	broad.mit.edu	37	12	50501526	50501526	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:50501526T>C	uc001rvz.2	+	6	822	c.789T>C	c.(787-789)ACT>ACC	p.T263T	GPD1_uc001rwa.2_Silent_p.T240T	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	263					glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	ACCTGATCACTACCTGCTATG	0.597000													5	107					0	0	0.000602	0	0	
ZBTB39	9880	broad.mit.edu	37	12	57398126	57398126	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:57398126G>A	uc001sml.1	-	2	662	c.576C>T	c.(574-576)GAC>GAT	p.D192D	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						TATGGTTAGCGTCACTGGCAA	0.542000													51	99					0	0	0.003610	0	0	
LRP1	4035	broad.mit.edu	37	12	57570998	57570998	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:57570998C>A	uc001snd.2	+	25	4632	c.4166C>A	c.(4165-4167)CCA>CAA	p.P1389Q		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1389	Extracellular (Potential).|LDL-receptor class B 9.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	ATTGAGCACCCAAGGGCAATC	0.637000													10	21					9.70103e-10	1.02234e-09	0.008291	1	0	
LRIG3	121227	broad.mit.edu	37	12	59272641	59272641	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:59272641C>T	uc001sqr.2	-	14	2294	c.2048G>A	c.(2047-2049)GGA>GAA	p.G683E	LRIG3_uc009zqh.2_Missense_Mutation_p.G623E|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	683	Ig-like C2-type 2.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			TGAAATACTTCCTGCACTGTT	0.443000													40	104					0	0	0.008740	0	0	
GRIP1	23426	broad.mit.edu	37	12	66814553	66814553	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:66814553T>G	uc001stk.2	-	14	1870	c.1629A>C	c.(1627-1629)AAA>AAC	p.K543N	GRIP1_uc010sta.1_Missense_Mutation_p.K487N|GRIP1_uc001stj.2_Missense_Mutation_p.K325N|GRIP1_uc001stl.1_Missense_Mutation_p.K435N|GRIP1_uc001stm.2_Missense_Mutation_p.K543N	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	595	PDZ 5.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		GGTCTCCTGGTTTTCTACTGG	0.368000													36	84					0	0	0.005524	0	0	
PTPRB	5787	broad.mit.edu	37	12	70948972	70948972	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:70948972T>A	uc001swb.3	-	18	4487	c.4457A>T	c.(4456-4458)AAA>ATA	p.K1486I	PTPRB_uc010sto.1_Missense_Mutation_p.K1396I|PTPRB_uc010stp.1_Missense_Mutation_p.K1396I|PTPRB_uc001swc.3_Missense_Mutation_p.K1704I|PTPRB_uc001swa.3_Missense_Mutation_p.K1616I	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1486	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGTGAAGTATTTCACAGCTCC	0.453000													17	28					0	0	0.004007	0	0	
PTPRR	5801	broad.mit.edu	37	12	71286586	71286586	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:71286586C>T	uc001swi.1	-	2	646	c.230G>A	c.(229-231)CGC>CAC	p.R77H		NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	77	Extracellular (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		AATCTGGTGGCGTTTGCTTAC	0.448000													47	131					0	0	0.003610	0	0	
MYF6	4618	broad.mit.edu	37	12	81102715	81102715	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:81102715C>T	uc001szf.1	+	3	758	c.705C>T	c.(703-705)TGC>TGT	p.C235C		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	235					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AACTCCCCTGCGTGGAGGAAG	0.537000													14	42					0	0	0.001855	0	0	
STAB2	55576	broad.mit.edu	37	12	104015889	104015889	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:104015889G>T	uc001tjw.2	+	5	673	c.487G>T	c.(487-489)GTG>TTG	p.V163L		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	163	Extracellular (Potential).|EGF-like 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CTGTTCATCAGGTATGTCTGA	0.428000													19	41					1.67942e-08	1.75902e-08	0.006122	1	0	
STAB2	55576	broad.mit.edu	37	12	104121068	104121068	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:104121068C>T	uc001tjw.2	+	47	5061	c.4875C>T	c.(4873-4875)GTC>GTT	p.V1625V	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1625	Extracellular (Potential).|FAS1 5.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AAGATCTGGTCGGCCCAGGCC	0.527000													61	143					0	0	0.003610	0	0	
PRDM4	11108	broad.mit.edu	37	12	108128295	108128295	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:108128295G>A	uc001tmp.2	-	12	2535	c.2098C>T	c.(2098-2100)CGC>TGC	p.R700C	PRDM4_uc010sww.1_Missense_Mutation_p.R107C|PRDM4_uc001tmq.2_RNA	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	700					cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						TTGATCTGGCGTTCTCTAAGA	0.403000													42	106					0	0	0.010771	0	0	
PRDM4	11108	broad.mit.edu	37	12	108134747	108134747	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:108134747G>A	uc001tmp.2	-	10	2337	c.1900C>T	c.(1900-1902)CGG>TGG	p.R634W	PRDM4_uc010sww.1_Missense_Mutation_p.R41W|PRDM4_uc001tmq.2_RNA	NM_012406	NP_036538	Q9UKN5	PRDM4_HUMAN	PR domain containing 4	634	C2H2-type 2.				cell proliferation|negative regulation of cell cycle|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						AGGTGGGTCCGCAGGTTGCTG	0.448000													24	63					0	0	0.003330	0	0	
GLTP	51228	broad.mit.edu	37	12	110293442	110293442	+	Silent	SNP	G	A	A	rs138733952		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:110293442G>A	uc001tpm.2	-	4	543	c.429C>T	c.(427-429)ATC>ATT	p.I143I	GLTP_uc010sxt.1_RNA	NM_016433	NP_057517	Q9NZD2	GLTP_HUMAN	glycolipid transfer protein	143						cytoplasm	glycolipid binding|glycolipid transporter activity				0		Lung NSC(355;2.38e-06)|Breast(359;0.00354)|Myeloproliferative disorder(1001;0.0122)		BRCA - Breast invasive adenocarcinoma(302;0.0025)		TCTTCTGCACGATCCAGCCAT	0.617000													8	29					0	0	0.003080	0	0	
PPP1CC	5501	broad.mit.edu	37	12	111158936	111158936	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:111158936G>T	uc001tru.2	-	7	1162	c.917C>A	c.(916-918)GCC>GAC	p.A306D		NM_002710	NP_002701	P36873	PP1G_HUMAN	protein phosphatase 1, catalytic subunit, gamma	306					cell division|glycogen metabolic process|mitotic prometaphase|triglyceride catabolic process	cleavage furrow|condensed chromosome kinetochore|cytosol|midbody|MLL5-L complex|nuclear speck|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|protein binding|protein kinase binding|protein serine/threonine phosphatase activity	p.A306S(1)		lung(2)|central_nervous_system(1)	3						AGGTCTCGTGGCATTTGGCTT	0.393000													25	81					4.22769e-11	4.48988e-11	0.006320	1	0	
SH2B3	10019	broad.mit.edu	37	12	111884789	111884789	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:111884789A>G	uc001tse.2	+	4	1235	c.878A>G	c.(877-879)CAG>CGG	p.Q293R	SH2B3_uc010syf.1_Missense_Mutation_p.Q293R|SH2B3_uc001tsf.2_Missense_Mutation_p.Q293R|SH2B3_uc010syg.1_Missense_Mutation_p.Q91R	NM_005475	NP_005466	Q9UQQ2	SH2B3_HUMAN	SH2B adaptor protein 3	293	PH.				blood coagulation	cytosol	signal transducer activity			ovary(1)	1						GGAGACGAGCAGCAGCTGAAT	0.577000													15	36					0	0	0.003163	0	0	
ACAD10	80724	broad.mit.edu	37	12	112186136	112186136	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:112186136G>A	uc001tsq.2	+	17	2701	c.2501G>A	c.(2500-2502)CGT>CAT	p.R834H	ACAD10_uc001tsp.2_Missense_Mutation_p.R834H|ACAD10_uc009zvx.2_Missense_Mutation_p.R865H|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	834							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						CTGGATCCTCGTTGCCAACTC	0.532000													26	92					0	0	0.003954	0	0	
C12orf51	283450	broad.mit.edu	37	12	112650376	112650376	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:112650376T>C	uc009zwc.2	-	42	6296	c.6278A>G	c.(6277-6279)TAC>TGC	p.Y2093C	C12orf51_uc001ttr.1_Missense_Mutation_p.Y268C	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GTATGTGAAGTACACCCGGCC	0.562000													34	39					0	0	0.002836	0	0	
RNF10	9921	broad.mit.edu	37	12	121002881	121002881	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:121002881C>T	uc001typ.3	+	11	2155	c.1672C>T	c.(1672-1674)CGA>TGA	p.R558*	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Nonsense_Mutation_p.R469*	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	558					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GTAGGATGTTCGACAGCGTCA	0.453000													61	119					0	0	0.003610	0	0	
SBNO1	55206	broad.mit.edu	37	12	123782547	123782547	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:123782547C>T	uc010tap.1	-	30	4017	c.4017G>A	c.(4015-4017)ACG>ACA	p.T1339T	SBNO1_uc009zxv.2_RNA|SBNO1_uc010tao.1_Silent_p.T1338T|SBNO1_uc010taq.1_Silent_p.T290T	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	1339							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		GCCCATCTTCCGTTCTTAGCC	0.428000													28	82					0	0	0.008361	0	0	
UBC	7316	broad.mit.edu	37	12	125397684	125397684	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:125397684T>C	uc001ugs.3	-	2	1082	c.634A>G	c.(634-636)AAC>GAC	p.N212D	UBC_uc001ugr.2_5'Flank|UBC_uc001ugu.1_Missense_Mutation_p.N212D|UBC_uc001ugt.2_Missense_Mutation_p.N212D|UBC_uc001ugv.2_Intron|UBC_uc001ugw.2_Missense_Mutation_p.N60D	NM_021009	NP_066289	P0CG48	UBC_HUMAN	ubiquitin C	212	Ubiquitin-like 3.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		TTCTGGATGTTGTAGTCAGAC	0.498000													41	177					0	0	0.007835	0	0	
ANKLE2	23141	broad.mit.edu	37	12	133331306	133331306	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:133331306A>G	uc001ukx.2	-	2	662	c.595T>C	c.(595-597)TAC>CAC	p.Y199H	ANKLE2_uc001uky.3_Missense_Mutation_p.Y137H	NM_015114	NP_055929	Q86XL3	ANKL2_HUMAN	ankyrin repeat and LEM domain containing 2	199						cytoplasm|integral to membrane|nuclear envelope					0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.3e-08)|Epithelial(86;1.56e-07)|all cancers(50;4.94e-06)		ACCCCATAGTACAGGGGCGGC	0.577000													26	65					0	0	0.003954	0	0	
NUPL1	9818	broad.mit.edu	37	13	25882001	25882001	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:25882001T>C	uc001uqi.2	+	2	411	c.165T>C	c.(163-165)ACT>ACC	p.T55T	NUPL1_uc001uqg.1_Silent_p.T55T|NUPL1_uc001uqj.2_Silent_p.T55T	NM_014089	NP_054808	Q9BVL2	NUPL1_HUMAN	nucleoporin like 1 isoform a	55	14 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore					0		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.0092)|Epithelial(112;0.0477)|OV - Ovarian serous cystadenocarcinoma(117;0.165)|GBM - Glioblastoma multiforme(144;0.244)		CTCCAGCAACTACATCTGCTC	0.423000													23	71					0	0	0.002780	0	0	
MTUS2	23281	broad.mit.edu	37	13	29855999	29855999	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:29855999G>A	uc001usl.3	+	4	2891	c.2833G>A	c.(2833-2835)GCT>ACT	p.A945T		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	935	Localization to the growing distal tip of microtubules.|Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTCCACACCCGCTGGTAAGAC	0.542000													21	46					0	0	0.003330	0	0	
ENOX1	55068	broad.mit.edu	37	13	43930092	43930092	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:43930092C>T	uc001uza.3	-	8	1086	c.786G>A	c.(784-786)TCG>TCA	p.S262S	ENOX1_uc001uzb.3_Silent_p.S262S|ENOX1_uc001uzc.3_Silent_p.S262S|ENOX1_uc001uyz.3_5'UTR|ENOX1_uc010tfm.1_Silent_p.S75S	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	262					electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		CTTCGTGCTCCGAGTAGTGCA	0.637000													39	114					0	0	0.003610	0	0	
SLC25A30	253512	broad.mit.edu	37	13	45983139	45983139	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:45983139C>A	uc001vag.2	-	3	272	c.135G>T	c.(133-135)AAG>AAT	p.K45N	SLC25A30_uc010tfs.1_Intron|SLC25A30_uc001vah.2_Intron|SLC25A30_uc010tft.1_Translation_Start_Site	NM_001010875	NP_001010875	Q5SVS4	KMCP1_HUMAN	solute carrier family 25, member 30	45	Solcar 1.				mitochondrial transport	integral to membrane|mitochondrial inner membrane	binding			breast(1)	1		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.95e-05)		ATCTAATTTCCTTAAATTTTG	0.398000													6	73					3.59834e-05	3.71774e-05	0.001168	1	0	
SLITRK5	26050	broad.mit.edu	37	13	88330333	88330333	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:88330333G>A	uc001vln.2	+	2	2909	c.2690G>A	c.(2689-2691)CGC>CAC	p.R897H	SLITRK5_uc010tic.1_Missense_Mutation_p.R656H	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	897	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GACCTGAGACGCCCCCATCAG	0.617000													34	77					0	0	0.003755	0	0	
Unknown	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:19857036A>G	uc001vvq.1	-	5		c.494T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		CTGGATAATAAAGTTCATCTC	0.373000													9	73					0	0	0.004482	0	0	
METT11D1	64745	broad.mit.edu	37	14	21464375	21464375	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:21464375A>G	uc001vyn.2	+	12	1201	c.1004A>G	c.(1003-1005)CAT>CGT	p.H335R	METT11D1_uc001vym.2_Missense_Mutation_p.H335R|METT11D1_uc001vyo.2_Missense_Mutation_p.H335R|METT11D1_uc001vyp.2_Missense_Mutation_p.H177R|METT11D1_uc001vyq.2_Missense_Mutation_p.H177R	NM_022734	NP_073571	Q9H7H0	MET17_HUMAN	methyltransferase 11 domain containing 1 isoform	335					translation	mitochondrion|ribosome	copper ion binding|methyltransferase activity				0	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0191)		CAGTGTCCCCATGAACTCCCT	0.478000													44	229					0	0	0.003610	0	0	
LRRC16B	90668	broad.mit.edu	37	14	24534215	24534215	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:24534215G>A	uc001wlj.2	+	33	3286	c.3129G>A	c.(3127-3129)CCG>CCA	p.P1043P	LRRC16B_uc001wlk.2_Silent_p.P139P	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	1043										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		CGGAGGCACCGCTGCCTCCAC	0.647000													42	70					0	0	0.008740	0	0	
RNF31	55072	broad.mit.edu	37	14	24619997	24619997	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:24619997G>A	uc001wmn.1	+	8	1637	c.1388G>A	c.(1387-1389)CGA>CAA	p.R463Q	RNF31_uc001wml.1_Missense_Mutation_p.R312Q|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Missense_Mutation_p.R278Q|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	463	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		GGGCCCCCACGACGCCTTAGT	0.612000													23	39					0	0	0.002299	0	0	
CTSG	1511	broad.mit.edu	37	14	25042973	25042973	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:25042973C>G	uc001wpq.2	-	5	675	c.638G>C	c.(637-639)GGC>GCC	p.G213A		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	213	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		GGAGACGATGCCGTGGGCCAC	0.557000													41	93					0	0	0.009718	0	0	
LRFN5	145581	broad.mit.edu	37	14	42356114	42356114	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:42356114G>A	uc001wvm.2	+	3	1484	c.286G>A	c.(286-288)GCT>ACT	p.A96T	LRFN5_uc010ana.2_Missense_Mutation_p.A96T	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	96	Extracellular (Potential).|LRR 2.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TCATGCTTTCGCTGACCTACG	0.348000										HNSCC(30;0.082)			29	46					0	0	0.009535	0	0	
SOS2	6655	broad.mit.edu	37	14	50616749	50616749	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:50616749T>C	uc001wxs.3	-	14	2459	c.2361A>G	c.(2359-2361)ACA>ACG	p.T787T	SOS2_uc010tql.1_Silent_p.T754T|SOS2_uc010tqm.1_RNA	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2	787	Ras-GEF.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					ACTCCAAAAGTGTCAGCTGAC	0.353000													54	99					0	0	0.003610	0	0	
NAA30	122830	broad.mit.edu	37	14	57863536	57863536	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:57863536C>T	uc001xcx.3	+	3	992	c.838C>T	c.(838-840)CGC>TGC	p.R280C	NAA30_uc010trk.1_Missense_Mutation_p.R22C|NAA30_uc010aow.2_RNA	NM_001011713	NP_001011713	Q147X3	NAA30_HUMAN	N-acetyltransferase 12	280	N-acetyltransferase.					cytoplasm	peptide alpha-N-acetyltransferase activity			skin(1)	1						AAAGATGTTCCGCAGAGGTTA	0.373000													23	65					0	0	0.003330	0	0	
C14orf135	64430	broad.mit.edu	37	14	60582091	60582091	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:60582091G>A	uc001xer.3	+	3	1089	c.567G>A	c.(565-567)CCG>CCA	p.P189P	C14orf135_uc001xeq.2_Silent_p.P189P|C14orf135_uc010apm.2_5'Flank	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	423						integral to membrane				ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		CCTTTTATCCGAAGGATGTGC	0.353000													44	122					0	0	0.009718	0	0	
TRMT5	57570	broad.mit.edu	37	14	61446378	61446378	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:61446378G>A	uc001xff.3	-	2	329	c.238C>T	c.(238-240)CGA>TGA	p.R80*	SLC38A6_uc001xfg.1_5'Flank|SLC38A6_uc001xfh.1_5'Flank|SLC38A6_uc001xfi.2_5'Flank|SLC38A6_uc001xfj.1_5'Flank|SLC38A6_uc001xfk.2_5'Flank|SLC38A6_uc010trz.1_5'Flank	NM_020810	NP_065861	Q32P41	TRMT5_HUMAN	tRNA methyltransferase 5	80						cytoplasm	tRNA (guanine-N1-)-methyltransferase activity			central_nervous_system(2)|large_intestine(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0873)		GTCATGCCTCGGACATCAGAA	0.378000													50	181					0	0	0.003610	0	0	
C14orf115	55237	broad.mit.edu	37	14	74823805	74823805	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:74823805C>T	uc001xpw.3	+	2	510	c.319C>T	c.(319-321)CGC>TGC	p.R107C		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	107					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		GCTGCGGGCCCGCACCGTGGT	0.642000													7	23					0	0	0.001984	0	0	
LTBP2	4053	broad.mit.edu	37	14	74978021	74978021	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:74978021G>A	uc001xqa.2	-	19	3342	c.2955C>T	c.(2953-2955)TGC>TGT	p.C985C		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	985	EGF-like 7; calcium-binding (Potential).|Cys-rich.				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGGAATTGACGCATCTCCCAT	0.592000													30	70					0	0	0.008361	0	0	
STON2	85439	broad.mit.edu	37	14	81743821	81743821	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:81743821G>A	uc010tvu.1	-	4	2035	c.1834C>T	c.(1834-1836)CGC>TGC	p.R612C	STON2_uc001xvk.1_Missense_Mutation_p.R612C|STON2_uc010tvt.1_Missense_Mutation_p.R409C	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	612	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		AGGCCCAGGCGGCACTCTGCG	0.517000													17	34					0	0	0.004990	0	0	
ATXN3	4287	broad.mit.edu	37	14	92560113	92560113	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:92560113A>G	uc001yac.3	-	4	366	c.297T>C	c.(295-297)TAT>TAC	p.Y99Y	ATXN3_uc010aug.2_Silent_p.Y84Y|ATXN3_uc001yad.3_Silent_p.Y44Y|ATXN3_uc010auh.2_Intron|ATXN3_uc001yae.3_Intron|ATXN3_uc010twl.1_Intron	NM_004993	NP_004984	P54252	ATX3_HUMAN	ataxin 3 reference isoform	99	Josephin.				cell death|nervous system development|nucleotide-excision repair|regulation of transcription, DNA-dependent|synaptic transmission|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleoplasm	cysteine-type peptidase activity|protein binding				0		all_cancers(154;0.0768)		COAD - Colon adenocarcinoma(157;0.224)		TGAGCCTCTGATACTCTGGAC	0.328000													33	58					0	0	0.012213	0	0	
KIAA1409	57578	broad.mit.edu	37	14	94044213	94044213	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:94044213G>A	uc001ybv.1	+	15	1789	c.1706G>A	c.(1705-1707)CGA>CAA	p.R569Q	KIAA1409_uc001ybs.1_Missense_Mutation_p.R569Q	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	746						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GATCCTGGCCGACGAGTTCAG	0.443000													58	123					0	0	0.003610	0	0	
MIR487A	619555	broad.mit.edu	37	14	101518829	101518829	+	RNA	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:101518829C>T	hsa-mir-487a|MI0002471	+			c.47C>T			uc010awe.2_5'Flank|MIR382_hsa-mir-382|MI0000790_5'Flank|uc010txo.1_5'Flank|MIR134_hsa-mir-134|MI0000474_5'Flank|MIR668_hsa-mir-668|MI0003761_5'Flank|MIR485_hsa-mir-485|MI0002469_5'Flank																	0						TAATTTATGACGAATCATACA	0.522000													9	30					0	0	0.008291	0	0	
AHNAK2	113146	broad.mit.edu	37	14	105418203	105418203	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:105418203G>A	uc010axc.1	-	7	3705	c.3585C>T	c.(3583-3585)GCC>GCT	p.A1195A	AHNAK2_uc001ypx.2_Silent_p.A1095A	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1195						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GACTCACGTCGGCCTCCACTT	0.622000													25	155					0	0	0.003610	0	0	
ADAM6	8755	broad.mit.edu	37	14	107013282	107013282	+	RNA	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:107013282C>T	uc010tyt.1	-	169		c.7775G>A								Parts of antibodies, mostly variable regions.												0						TCAGAAACTGCCACACATATC	0.498000													31	66					0	0	0.008361	0	0	
Unknown	0	broad.mit.edu	37	15	20649487	20649487	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:20649487G>A	uc001ytg.2	-	18	2731	c.2022C>T	c.(2020-2022)GAC>GAT	p.D674D	uc010tyx.1_RNA|uc001yth.3_Silent_p.D674D|uc010tyy.1_Silent_p.D674D					RecName: Full=Putative HERC2-like protein 3;																		CACCAGAGTCGTCCTCTGTGT	0.562000													20	124					0	0	0.004656	0	0	
OCA2	4948	broad.mit.edu	37	15	28273201	28273201	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:28273201G>A	uc001zbh.3	-	4	441	c.331C>T	c.(331-333)CGG>TGG	p.R111W	OCA2_uc010ayv.2_Missense_Mutation_p.R111W	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	111	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		GGTATGCACCGTGACCTGGAA	0.488000									Oculocutaneous_Albinism				20	45					0	0	0.010504	0	0	
GJD2	57369	broad.mit.edu	37	15	35044979	35044979	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:35044979G>A	uc001zis.1	-	2	666	c.666C>T	c.(664-666)GGC>GGT	p.G222G	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	222	Extracellular (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		GGACACTAAAGCCATAGAGAA	0.488000													17	35					0	0	0.004007	0	0	
SPRED1	161742	broad.mit.edu	37	15	38643327	38643327	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:38643327T>C	uc001zka.3	+	7	1132	c.797T>C	c.(796-798)ATG>ACG	p.M266T		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	266	KBD.				inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		CATCCTGACATGTGGAAAAAT	0.393000									Legius_syndrome				26	61					0	0	0.007291	0	0	
BUB1B	701	broad.mit.edu	37	15	40468681	40468681	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:40468681C>T	uc001zkx.3	+	5	600	c.388C>T	c.(388-390)CGT>TGT	p.R130C	BUB1B_uc010ucl.1_5'UTR	NM_001211	NP_001202	O60566	BUB1B_HUMAN	budding uninhibited by benzimidazoles 1 beta	130	BUB1 N-terminal.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell division|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|phosphatidylinositol-mediated signaling|protein localization to kinetochore|spindle organization	anaphase-promoting complex|condensed chromosome outer kinetochore|cytosol|microtubule organizing center|perinuclear region of cytoplasm|spindle midzone	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|kidney(1)	4		all_cancers(109;1.12e-18)|all_epithelial(112;1.61e-15)|Lung NSC(122;5.63e-11)|all_lung(180;1.4e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.83e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0556)		GTTACAGGGGCGTTTATGCAA	0.398000			Mis|N|F|S			rhabdomyosarcoma			Mosaic_Variegated_Aneuploidy_Syndrome				13	50					0	0	0.003163	0	0	
IVD	3712	broad.mit.edu	37	15	40703479	40703479	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:40703479C>T	uc001zls.3	+	5	820	c.486C>T	c.(484-486)ATC>ATT	p.I162I	IVD_uc001zlq.2_Silent_p.I132I	NM_002225	NP_002216	P26440	IVD_HUMAN	isovaleryl Coenzyme A dehydrogenase isoform 1	159					leucine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|isovaleryl-CoA dehydrogenase activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;1.52e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0808)		GTGAGTACATCGGAGCCCTGG	0.532000													107	200					0	0	0.003610	0	0	
MGA	23269	broad.mit.edu	37	15	42032360	42032360	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:42032360G>T	uc010ucy.1	+	14	4725	c.4544G>T	c.(4543-4545)GGG>GTG	p.G1515V	MGA_uc010ucz.1_Missense_Mutation_p.G1515V|MGA_uc010uda.1_Missense_Mutation_p.G131V	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1515						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AATCGCCCTGGGAAGAATCTG	0.512000													17	30					1.99824e-07	2.07707e-07	0.004990	1	0	
MYO9A	4649	broad.mit.edu	37	15	72146864	72146864	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:72146864C>T	uc002atl.3	-	35	6673	c.6200G>A	c.(6199-6201)CGT>CAT	p.R2067H	MYO9A_uc002atj.2_5'UTR|MYO9A_uc002atk.2_Missense_Mutation_p.R862H	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2067	Tail.|Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						ACTGGTCAAACGGGACAGTTC	0.368000													25	91					0	0	0.003330	0	0	
PML	5371	broad.mit.edu	37	15	74325013	74325013	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:74325013T>C	uc002awv.2	+	5	1495	c.1355T>C	c.(1354-1356)GTG>GCG	p.V452A	PML_uc002awm.2_Missense_Mutation_p.V452A|PML_uc002awl.2_Intron|PML_uc002awj.1_Intron|PML_uc002awk.2_Missense_Mutation_p.V452A|PML_uc002awn.2_Missense_Mutation_p.V452A|PML_uc002awo.2_Intron|PML_uc002awp.2_Intron|PML_uc002awq.2_Missense_Mutation_p.V452A|PML_uc002awr.2_Missense_Mutation_p.V452A|PML_uc002aws.2_Intron|PML_uc002awt.2_Intron|PML_uc002awu.2_Intron|PML_uc010ule.1_Missense_Mutation_p.V13A|PML_uc002awx.2_Intron|PML_uc002awy.2_Intron	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	452					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						GCACACCCCGTGCCAGTGTAC	0.627000			T	RARA|PAX5	APL|ALL								12	28					0	0	0.001368	0	0	
Unknown	0	broad.mit.edu	37	15	76074470	76074470	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:76074470A>G	uc010umm.1	+	8	649	c.572A>G	c.(571-573)CAG>CGG	p.Q191R	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;																		CGGTTACAGCAGACCATAAAG	0.577000													8	38					0	0	0.010729	0	0	
ADAMTS7	11173	broad.mit.edu	37	15	79089073	79089073	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:79089073C>T	uc002bej.3	-	4	889	c.678G>A	c.(676-678)CGG>CGA	p.R226R	ADAMTS7_uc010und.1_Silent_p.R226R|ADAMTS7_uc002bek.1_Silent_p.R226R	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	226					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						gccgtggccgccgccactgct	0.433000													10	37					0	0	0.010729	0	0	
ADAMTS7	11173	broad.mit.edu	37	15	79090417	79090417	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:79090417A>G	uc002bej.3	-	3	706	c.495T>C	c.(493-495)ATT>ATC	p.I165I	ADAMTS7_uc010und.1_Silent_p.I165I|ADAMTS7_uc002bek.1_Silent_p.I165I	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	165					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CCAGGGGCTCAATGAAGTAGT	0.642000													19	42					0	0	0.007413	0	0	
C15orf58	390637	broad.mit.edu	37	15	90785087	90785087	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:90785087G>A	uc002bpc.2	+	4	1126	c.947G>A	c.(946-948)CGG>CAG	p.R316Q		NM_001013657	NP_001013679	Q6ZNW5	VTC2_HUMAN	hypothetical protein LOC390637	316					glucose metabolic process	cytoplasm	GDP-D-glucose phosphorylase activity				0						CTGTGGGCCCGGAAGTCCAGC	0.557000													35	58					0	0	0.002836	0	0	
TM2D3	80213	broad.mit.edu	37	15	102182749	102182749	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:102182749G>A	uc002bxi.2	-	6	707	c.677C>T	c.(676-678)ACG>ATG	p.T226M	TM2D3_uc010usg.1_Intron|TM2D3_uc002bxh.2_Missense_Mutation_p.T161M|TM2D3_uc002bxj.2_Missense_Mutation_p.T200M|TM2D3_uc002bxk.2_Missense_Mutation_p.T161M	NM_078474	NP_510883	Q9BRN9	TM2D3_HUMAN	TM2 domain containing 3 isoform a	226	Helical; (Potential).					integral to membrane				ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GTCTATCAGCGTCCATATTCC	0.557000													24	52					0	0	0.002780	0	0	
Unknown	0	broad.mit.edu	37	15	102292811	102292811	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:102292811C>A	uc010usj.1	+	4	458	c.399C>A	c.(397-399)CGC>CGA	p.R133R	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CCTGCACTCGCGTGGGAACGA	0.607000													3	29					0.004672	0.00474121	0.004672	1	0	
PDIA2	64714	broad.mit.edu	37	16	335551	335551	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:335551C>T	uc002cgn.1	+	12	2075	c.967C>T	c.(967-969)CTG>TTG	p.L323L	PDIA2_uc010bqt.1_Silent_p.L168L|PDIA2_uc002cgo.1_Silent_p.L323L	NM_006849	NP_006840	Q13087	PDIA2_HUMAN	protein disulfide isomerase A2 precursor	323					apoptosis|cell redox homeostasis|glycerol ether metabolic process|protein folding|protein retention in ER lumen|response to hypoxia	endoplasmic reticulum lumen	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity|steroid binding			central_nervous_system(1)|skin(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				TGAGCACGTGCTGCAGTACTT	0.627000													14	30					0	0	0.004990	0	0	
RHBDL1	9028	broad.mit.edu	37	16	726836	726836	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:726836C>T	uc002cis.1	+	2	588	c.561C>T	c.(559-561)TAC>TAT	p.Y187Y	RHBDL1_uc002cir.1_Silent_p.Y122Y|RHBDL1_uc010uun.1_Silent_p.Y122Y	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	187					proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				GCCGCTGGTACTTCTACCGTC	0.687000													28	55					0	0	0.007291	0	0	
WDR24	84219	broad.mit.edu	37	16	737628	737628	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:737628C>T	uc002ciz.1	-	2	1353	c.593G>A	c.(592-594)CGG>CAG	p.R198Q		NM_032259	NP_115635	Q96S15	WDR24_HUMAN	WD repeat domain 24	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(1)|central_nervous_system(1)	2		Hepatocellular(780;0.0218)				CCTCTCGCACCGGTCGGGACG	0.627000													8	15					0	0	0.006214	0	0	
MLST8	64223	broad.mit.edu	37	16	2256622	2256622	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:2256622G>A	uc002coz.2	+	4	425	c.306G>A	c.(304-306)ACG>ACA	p.T102T	MLST8_uc002coy.2_Silent_p.T102T|MLST8_uc002cpa.2_5'UTR|MLST8_uc002cpb.2_Silent_p.T101T|MLST8_uc010uvx.1_Silent_p.T36T|MLST8_uc002cpc.2_Silent_p.T102T|MLST8_uc002cpd.2_Silent_p.T36T|MLST8_uc002cpe.2_Silent_p.T102T|MLST8_uc010uvy.1_Silent_p.T102T|MLST8_uc002cpg.2_Silent_p.T121T|MLST8_uc002cph.2_RNA|MLST8_uc002cpf.2_Silent_p.T102T	NM_022372	NP_071767	Q9BVC4	LST8_HUMAN	G protein beta subunit-like	102	WD 3.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|T cell costimulation	cytosol	protein binding				0						GGATGTACACGGGCGGCGAGG	0.622000													33	97					0	0	0.003271	0	0	
E4F1	1877	broad.mit.edu	37	16	2282763	2282763	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:2282763G>A	uc002cpm.2	+	6	785	c.737G>A	c.(736-738)CGC>CAC	p.R246H	E4F1_uc010bsi.2_Missense_Mutation_p.R246H|E4F1_uc010bsj.2_Missense_Mutation_p.R246H	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	246	Mediates dimerization, DNA-binding, transcription repression of CCNA2 and interaction with HMGA2.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GCAGATGAGCGCCCCTACAAG	0.642000													19	46					0	0	0.007413	0	0	
CREBBP	1387	broad.mit.edu	37	16	3828749	3828749	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:3828749G>T	uc002cvv.2	-	9	2097	c.1893C>A	c.(1891-1893)GCC>GCA	p.A631A	CREBBP_uc002cvw.2_Silent_p.A593A	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	631	KIX.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		TCTTAGCATAGGCTACCAGGT	0.502000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				28	107					7.38237e-10	7.79187e-10	0.006320	1	0	
USP7	7874	broad.mit.edu	37	16	8988969	8988969	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:8988969A>G	uc002czl.2	-	28	3157	c.2958T>C	c.(2956-2958)AAT>AAC	p.N986N	USP7_uc010uyk.1_Silent_p.N887N|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Silent_p.N887N|USP7_uc002czk.2_Silent_p.N970N	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	986					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						CAAGCATCTCATTCTCTTTGT	0.493000													76	145					0	0	0.003610	0	0	
C16orf72	29035	broad.mit.edu	37	16	9210617	9210617	+	Silent	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:9210617A>C	uc002czm.2	+	4	1041	c.676A>C	c.(676-678)AGA>CGA	p.R226R		NM_014117	NP_054836	Q14CZ0	CP072_HUMAN	hypothetical protein LOC29035	226										large_intestine(1)	1						TAGTCGAAGGAGAAATGGACT	0.478000													51	91					0	0	0.003610	0	0	
UMOD	7369	broad.mit.edu	37	16	20359631	20359631	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:20359631G>A	uc002dgz.2	-	4	1016	c.887C>T	c.(886-888)ACG>ATG	p.T296M	UMOD_uc002dha.2_Missense_Mutation_p.T296M|UMOD_uc002dhb.2_Missense_Mutation_p.T329M	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	296					cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						CTCCTCACACGTCCCCTCCAC	0.572000													35	94					0	0	0.003271	0	0	
RBBP6	5930	broad.mit.edu	37	16	24581781	24581781	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:24581781G>A	uc002dmh.2	+	17	4810	c.3770G>A	c.(3769-3771)GGA>GAA	p.G1257E	RBBP6_uc010vcb.1_Missense_Mutation_p.G1124E|RBBP6_uc002dmi.2_Missense_Mutation_p.G1223E|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.G1090E	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1257					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AAAGTGACTGGAACTGAAGGA	0.408000													11	38					0	0	0.001855	0	0	
ZNF689	115509	broad.mit.edu	37	16	30616471	30616471	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:30616471A>G	uc002dyx.2	-	3	937	c.617T>C	c.(616-618)GTT>GCT	p.V206A	ZNF689_uc010bzy.2_5'UTR	NM_138447	NP_612456	Q96CS4	ZN689_HUMAN	zinc finger protein HIT-39	206	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			Colorectal(24;0.198)			CTGGTCACAAACATAGGGGCA	0.582000													16	56					0	0	0.004007	0	0	
ITGAD	3681	broad.mit.edu	37	16	31405644	31405644	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:31405644T>C	uc002ebv.1	+	2	168	c.119T>C	c.(118-120)GTG>GCG	p.V40A	ITGAD_uc010vfl.1_Missense_Mutation_p.V40A|ITGAD_uc010cap.1_Missense_Mutation_p.V40A	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	40	Extracellular (Potential).|FG-GAP 1.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CAGAGCGTGGTGCAGTTCGGT	0.562000													7	32					0	0	0.001984	0	0	
N4BP1	9683	broad.mit.edu	37	16	48595876	48595876	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:48595876A>G	uc002efp.2	-	2	915	c.678T>C	c.(676-678)TCT>TCC	p.S226S		NM_153029	NP_694574	O75113	N4BP1_HUMAN	Nedd4 binding protein 1	226					negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination	nucleolus|PML body					0		all_cancers(37;0.179)|all_lung(18;0.11)				TTTCATCTCTAGAAATATTCA	0.408000													13	45					0	0	0.002450	0	0	
SALL1	6299	broad.mit.edu	37	16	51173150	51173150	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:51173150G>A	uc010vgs.1	-	2	3014	c.2983C>T	c.(2983-2985)CGG>TGG	p.R995W	SALL1_uc010vgr.1_Missense_Mutation_p.R898W|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	995					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AATTTACCCCGGTCTCTAAAA	0.433000													32	54					0	0	0.012213	0	0	
RSPRY1	89970	broad.mit.edu	37	16	57269043	57269043	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:57269043C>T	uc002elb.2	+	14	1815	c.1537C>T	c.(1537-1539)CGT>TGT	p.R513C	RSPRY1_uc002elc.2_Missense_Mutation_p.R513C|RSPRY1_uc002eld.2_Missense_Mutation_p.R513C	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	ring finger and SPRY domain containing 1	513						extracellular region	zinc ion binding			ovary(1)	1						CAGGCACAGGCGTCTTGCTCT	0.433000													12	27					0	0	0.001368	0	0	
GPR97	222487	broad.mit.edu	37	16	57719834	57719834	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:57719834G>A	uc002emh.2	+	11	1639	c.1536G>A	c.(1534-1536)TTG>TTA	p.L512L	GPR97_uc010vhv.1_Silent_p.L392L|GPR97_uc010cdd.2_RNA|GPR97_uc010cde.2_Silent_p.L120L	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	512	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						TCAACTCCTTGCAAGGTGAGG	0.592000													31	56					0	0	0.002836	0	0	
PRSS54	221191	broad.mit.edu	37	16	58324946	58324946	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:58324946C>A	uc002enf.2	-	4	575	c.180G>T	c.(178-180)CAG>CAT	p.Q60H	PRSS54_uc002eng.2_Missense_Mutation_p.Q60H|PRSS54_uc010vie.1_Intron	NM_001080492	NP_001073961	Q6PEW0	PRS54_HUMAN	plasma kallikrein-like protein 4 precursor	60	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						ACTGGGAGTCCTGCAGCGACA	0.607000													16	31					2.35188e-11	2.50161e-11	0.006122	1	0	
CDH8	1006	broad.mit.edu	37	16	61761058	61761058	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:61761058G>A	uc002eog.1	-	9	1728	c.1476C>T	c.(1474-1476)AAC>AAT	p.N492N	CDH8_uc002eoh.2_Silent_p.N261N	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	492	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		ATTCAGGGGCGTTGTCATTGA	0.393000													6	145					0	0	0.001168	0	0	
CDH8	1006	broad.mit.edu	37	16	61851566	61851566	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:61851566C>T	uc002eog.1	-	7	1346	c.1094G>A	c.(1093-1095)CGC>CAC	p.R365H	CDH8_uc002eoh.2_Missense_Mutation_p.R134H	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	365	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GCCACTGAAGCGTGGGTCAAT	0.468000													23	55					0	0	0.002780	0	0	
PLEKHG4	25894	broad.mit.edu	37	16	67321888	67321888	+	Missense_Mutation	SNP	G	A	A	rs56077142	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:67321888G>A	uc002eso.3	+	18	5726	c.3191G>A	c.(3190-3192)CGC>CAC	p.R1064H	PLEKHG4_uc002esp.3_Missense_Mutation_p.R871H|PLEKHG4_uc002esq.3_Missense_Mutation_p.R1064H|PLEKHG4_uc010cef.2_Missense_Mutation_p.R1064H|PLEKHG4_uc002ess.3_Missense_Mutation_p.R1064H|PLEKHG4_uc010ceg.2_Missense_Mutation_p.R983H	NM_015432	NP_056247	Q58EX7	PKHG4_HUMAN	pleckstrin homology domain containing, family G	1064					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)|Kidney(780;0.119)		ATCAACGACCGCACCGTCAAC	0.602000													16	60					0	0	0.004007	0	0	
SLC12A4	6560	broad.mit.edu	37	16	67984960	67984960	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:67984960A>G	uc002euz.2	-	10	1442	c.1301T>C	c.(1300-1302)ATC>ACC	p.I434T	SLC12A4_uc010ceu.2_Missense_Mutation_p.I428T|SLC12A4_uc010vkh.1_Missense_Mutation_p.I403T|SLC12A4_uc010vki.1_Missense_Mutation_p.I434T|SLC12A4_uc010vkj.1_Missense_Mutation_p.I436T|SLC12A4_uc002eva.2_Missense_Mutation_p.I434T|SLC12A4_uc002evb.2_Intron	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	434					cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GCCAGCCATGATGCCTCCAAA	0.582000													18	49					0	0	0.010504	0	0	
CDH3	1001	broad.mit.edu	37	16	68716319	68716319	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:68716319G>A	uc002ewf.2	+	9	2243	c.1111G>A	c.(1111-1113)GGT>AGT	p.G371S	CDH3_uc010vli.1_Missense_Mutation_p.G316S	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	371	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		TATCATGGGCGGTGACGACGG	0.602000													12	28					0	0	0.001368	0	0	
LDHD	197257	broad.mit.edu	37	16	75146546	75146546	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:75146546C>T	uc002fdm.2	-	10	1359	c.1312G>A	c.(1312-1314)GCC>ACC	p.A438T	LDHD_uc002fdn.2_Missense_Mutation_p.A415T	NM_153486	NP_705690	Q86WU2	LDHD_HUMAN	D-lactate dehydrogenase isoform 1 precursor	438							D-lactate dehydrogenase (cytochrome) activity|flavin adenine dinucleotide binding|protein binding				0						AGTTCCTCGGCGTCATCAGGG	0.612000													11	17					0	0	0.001368	0	0	
KIAA0513	9764	broad.mit.edu	37	16	85111120	85111120	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:85111120G>A	uc002fiu.2	+	6	884	c.664G>A	c.(664-666)GAA>AAA	p.E222K	KIAA0513_uc002fis.3_Missense_Mutation_p.E222K|KIAA0513_uc010voj.1_Missense_Mutation_p.E222K|KIAA0513_uc002fit.2_Missense_Mutation_p.E222K	NM_014732	NP_055547	O60268	K0513_HUMAN	hypothetical protein LOC9764	222						cytoplasm				breast(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.234)		CTGGCTGGCCGAAAAGAAGGA	0.617000													15	27					0	0	0.004007	0	0	
FOXL1	2300	broad.mit.edu	37	16	86612522	86612522	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:86612522G>A	uc002fjr.2	+	1	408	c.193G>A	c.(193-195)GCG>ACG	p.A65T		NM_005250	NP_005241	Q12952	FOXL1_HUMAN	forkhead box L1	65	Fork-head.				brain development|camera-type eye development|cartilage development|embryo development|forelimb morphogenesis|heart development|organ morphogenesis|pattern specification process|proteoglycan biosynthetic process|regulation of sequence-specific DNA binding transcription factor activity|regulation of Wnt receptor signaling pathway|visceral mesoderm-endoderm interaction involved in midgut development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1						GATCCAGGACGCGCCCGAGCA	0.662000													28	60					0	0	0.008361	0	0	
KLHDC4	54758	broad.mit.edu	37	16	87742975	87742975	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:87742975C>G	uc002fki.2	-	10	1389	c.1343G>C	c.(1342-1344)GGG>GCG	p.G448A	KLHDC4_uc002fkh.1_RNA|KLHDC4_uc010cht.1_Intron|KLHDC4_uc002fkj.2_Missense_Mutation_p.G417A|KLHDC4_uc002fkk.2_Missense_Mutation_p.G267A|KLHDC4_uc002fkl.2_Missense_Mutation_p.G391A|KLHDC4_uc010chu.1_Missense_Mutation_p.G267A	NM_017566	NP_060036	Q8TBB5	KLDC4_HUMAN	kelch domain containing 4	448	Kelch 6.									pancreas(2)	2				BRCA - Breast invasive adenocarcinoma(80;0.0283)		AAACATGCCCCCATAGACGTA	0.657000													11	69					0	0	0.010729	0	0	
TUBB3	10381	broad.mit.edu	37	16	90002028	90002028	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:90002028G>A	uc002fph.1	+	4	1234	c.1169G>A	c.(1168-1170)CGG>CAG	p.R390Q	TUBB3_uc002fpf.2_Missense_Mutation_p.R737Q|TUBB3_uc010ciz.1_Missense_Mutation_p.R318Q|TUBB3_uc002fpg.1_Missense_Mutation_p.R244Q|TUBB3_uc002fpi.1_Missense_Mutation_p.R318Q|TUBB3_uc002fpj.1_Missense_Mutation_p.R318Q|TUBB3_uc010cjb.1_Missense_Mutation_p.R244Q|TUBB3_uc002fpk.1_Missense_Mutation_p.R244Q	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	390					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		GCCATGTTCCGGCGCAAGGCC	0.627000													40	143					0	0	0.003610	0	0	
VPS53	55275	broad.mit.edu	37	17	465886	465886	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:465886G>A	uc002frn.2	-	14	1560	c.1413C>T	c.(1411-1413)TGC>TGT	p.C471C	VPS53_uc002frk.2_5'UTR|VPS53_uc010cjo.1_Silent_p.C471C|VPS53_uc002frl.2_RNA|VPS53_uc002frm.2_Silent_p.C442C|VPS53_uc002fro.2_Silent_p.C273C|VPS53_uc010cjp.1_Silent_p.C194C	NM_018289	NP_060759	Q5VIR6	VPS53_HUMAN	vacuolar protein sorting 53 isoform 2	471					protein transport	endosome membrane|Golgi apparatus					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0265)		AGAGGTCGGCGCAGCTGGGGA	0.562000													16	54					0	0	0.004007	0	0	
ABR	29	broad.mit.edu	37	17	959308	959308	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:959308C>T	uc002fsd.2	-	14	1638	c.1528G>A	c.(1528-1530)GTC>ATC	p.V510I	ABR_uc002fse.2_Missense_Mutation_p.V464I|ABR_uc010vqg.1_Missense_Mutation_p.V292I|ABR_uc002fsg.2_Missense_Mutation_p.V473I|ABR_uc002fsh.1_Intron	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	510	C2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		GCAGAGTGGACGATGACATGA	0.577000											OREG0024067	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	38					0	0	0.007413	0	0	
ABR	29	broad.mit.edu	37	17	973307	973307	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:973307G>A	uc002fsd.2	-	9	1028	c.918C>T	c.(916-918)GGC>GGT	p.G306G	ABR_uc002fse.2_Silent_p.G260G|ABR_uc010vqg.1_Silent_p.G88G|ABR_uc002fsg.2_Silent_p.G269G|ABR_uc002fsh.1_Silent_p.G190G	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	306	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		CCACCAGGAAGCCGTCCTTCA	0.627000													9	20					0	0	0.004482	0	0	
PRPF8	10594	broad.mit.edu	37	17	1582418	1582418	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:1582418G>A	uc002fte.2	-	11	1606	c.1492C>T	c.(1492-1494)CGC>TGC	p.R498C		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	498						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TAGCCCTGGCGGCAAACCTGG	0.512000													31	67					0	0	0.007291	0	0	
PRPF8	10594	broad.mit.edu	37	17	1585245	1585245	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:1585245C>T	uc002fte.2	-	5	636	c.522G>A	c.(520-522)CCG>CCA	p.P174P		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	174						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		AGTCCAAGGGCGGCTCCTCAT	0.517000													25	51					0	0	0.002780	0	0	
SMTNL2	342527	broad.mit.edu	37	17	4510711	4510711	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:4510711C>T	uc002fyf.1	+	8	1382	c.1315C>T	c.(1315-1317)CGC>TGC	p.R439C	SMTNL2_uc002fye.2_Missense_Mutation_p.R295C	NM_001114974	NP_001108446	Q2TAL5	SMTL2_HUMAN	smoothelin-like 2 isoform 1	439	CH.										0				READ - Rectum adenocarcinoma(115;0.0325)		GGTGATGGGCCGCAAGCCGGA	0.582000													50	105					0	0	0.003610	0	0	
USP6	9098	broad.mit.edu	37	17	5041527	5041527	+	Missense_Mutation	SNP	C	T	T	rs139849858	by1000genomes	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:5041527C>T	uc002gau.1	+	21	3267	c.1037C>T	c.(1036-1038)ACG>ATG	p.T346M	USP6_uc002gav.1_Missense_Mutation_p.T346M|USP6_uc010ckz.1_Translation_Start_Site|uc002gbd.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	346					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						AGGGCCTCTACGAAGAAACTA	0.582000			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								56	116					0	0	0.003610	0	0	
NLGN2	57555	broad.mit.edu	37	17	7317671	7317671	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:7317671G>A	uc002ggt.1	+	3	590	c.517G>A	c.(517-519)GAC>AAC	p.D173N		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	173	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				AGATATCCGTGACCCTGGGAA	0.622000													8	19					0	0	0.003080	0	0	
TP53	7157	broad.mit.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:7574003G>A	uc002gim.2	-	10	1218	c.1024C>T	c.(1024-1026)CGA>TGA	p.R342*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Nonsense_Mutation_p.R210*|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Nonsense_Mutation_p.R342*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	342	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Nuclear export signal.|Interaction with HIPK2.		R -> P (in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> L (in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R342*(49)|p.0?(7)|p.R342fs*3(5)|p.R342P(3)|p.R342Q(2)|p.?(1)|p.R342_N345delRELN(1)|p.I332fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTCAGCTCTCGGAACATCTCG	0.498000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			4	17					0	0	0.000602	0	0	
TP53	7157	broad.mit.edu	37	17	7574018	7574018	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:7574018G>A	uc002gim.2	-	10	1203	c.1009C>T	c.(1009-1011)CGC>TGC	p.R337C	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Missense_Mutation_p.R205C|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Missense_Mutation_p.R337C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	337	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Interaction with HIPK2.		R -> H (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> P (in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R337C(12)|p.0?(7)|p.R337L(5)|p.R337H(2)|p.?(1)|p.I332fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ATCTCGAAGCGCTCACGCCCA	0.448000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			8	14					0	0	0.004482	0	0	
DNAH2	146754	broad.mit.edu	37	17	7661896	7661896	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:7661896T>A	uc002giu.1	+	13	2149	c.2135T>A	c.(2134-2136)CTC>CAC	p.L712H		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	712	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CACCCGGGACTCAAGAAACTG	0.542000													31	75					0	0	0.009535	0	0	
MYH13	8735	broad.mit.edu	37	17	10214522	10214522	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:10214522C>T	uc002gmk.1	-	33	4644	c.4554G>A	c.(4552-4554)GAG>GAA	p.E1518E		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1518	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CTGCAATCTGCTCAGTTAAGT	0.463000													8	48					0	0	0.003080	0	0	
MYH13	8735	broad.mit.edu	37	17	10222453	10222453	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:10222453G>A	uc002gmk.1	-	27	3482	c.3392C>T	c.(3391-3393)ACG>ATG	p.T1131M		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1131	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GGCTCTGAGCGTGTGTTCCGC	0.557000													28	54					0	0	0.004656	0	0	
MPRIP	23164	broad.mit.edu	37	17	17030057	17030057	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:17030057C>T	uc002gqu.1	+	4	365	c.309C>T	c.(307-309)TGC>TGT	p.C103C	MPRIP_uc002gqv.1_Silent_p.C103C	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	103	Interaction with F-actin (By similarity).|PH 1.					cytoplasm|cytoskeleton	actin binding				0						TGAACCAGTGCACAGATGTGG	0.597000													18	34					0	0	0.006122	0	0	
TMEM11	8834	broad.mit.edu	37	17	21101952	21101952	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:21101952C>T	uc002gyp.2	-	2	707	c.264G>A	c.(262-264)GCG>GCA	p.A88A	TMEM11_uc002gyq.2_3'UTR	NM_003876	NP_003867	P17152	TMM11_HUMAN	transmembrane protein 11	88	Helical; (Potential).				mitochondrion organization	integral to mitochondrial inner membrane|integral to plasma membrane	protein binding				0						AGGCGGTGCCCGCCAGCACGG	0.622000													5	40					0	0	0.000602	0	0	
TAOK1	57551	broad.mit.edu	37	17	27857552	27857552	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:27857552G>A	uc002hdz.1	+	18	2470	c.2276G>A	c.(2275-2277)CGG>CAG	p.R759Q	TAOK1_uc010wbe.1_Missense_Mutation_p.R611Q|TAOK1_uc010wbf.1_Missense_Mutation_p.R759Q	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	759	Potential.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			GTTCTGAAACGGCTCAAGGAG	0.438000													21	57					0	0	0.012319	0	0	
OMG	4974	broad.mit.edu	37	17	29622153	29622153	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:29622153G>T	uc002hgj.2	-	2	1410	c.1197C>A	c.(1195-1197)ACC>ACA	p.T399T	NF1_uc002hgg.2_Intron|NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron	NM_002544	NP_002535	P23515	OMGP_HUMAN	oligodendrocyte myelin glycoprotein precursor	399	Ser/Thr-rich.				cell adhesion|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	anchored to membrane|plasma membrane		p.?(2)		ovary(1)|central_nervous_system(1)	2		all_cancers(10;6.97e-11)|all_epithelial(10;0.0051)|all_hematologic(16;0.0149)|Breast(31;0.0155)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|all_lung(9;0.0468)|Lung NSC(157;0.094)		UCEC - Uterine corpus endometrioid carcinoma (4;6.64e-05)|all cancers(4;1.81e-13)|Epithelial(4;4.04e-12)|OV - Ovarian serous cystadenocarcinoma(4;9.49e-12)|GBM - Glioblastoma multiforme(4;0.121)		ATAAGTTAAGGGTTGTGCTTT	0.413000													74	206					1.39921e-30	1.58423e-30	0.003610	1	0	
ZNF830	91603	broad.mit.edu	37	17	33289068	33289068	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:33289068T>G	uc002hih.3	+	1	520	c.483T>G	c.(481-483)GAT>GAG	p.D161E	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	161					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				ATTATGAAGATgaggaggagg	0.438000													6	50					0	0	0.001984	0	0	
ZNF830	91603	broad.mit.edu	37	17	33289083	33289083	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:33289083A>G	uc002hih.3	+	1	535	c.498A>G	c.(496-498)GAA>GAG	p.E166E	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	166					cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				aggaggaggaagaggaggagg	0.443000													4	45					0	0	0.000602	0	0	
THRA	7067	broad.mit.edu	37	17	38244713	38244713	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:38244713G>T	uc002htw.2	+	8	1425	c.942G>T	c.(940-942)ACG>ACT	p.T314T	THRA_uc010cwp.1_Silent_p.T314T|THRA_uc002htv.2_Silent_p.T314T|THRA_uc002htx.2_Silent_p.T314T	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	314	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	TGGATGACACGGAAGTGGCTC	0.572000													30	95					1.45844e-13	1.57824e-13	0.002836	1	0	
KRTAP4-11	653240	broad.mit.edu	37	17	39274424	39274424	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:39274424G>C	uc002hvz.2	-	1	183	c.144C>G	c.(142-144)AGC>AGG	p.S48R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	48	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].|5.		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCCTGCAGCAGCTGGACACAC	0.672000													4	50					0	0	0.009096	0	0	
KRT33A	3883	broad.mit.edu	37	17	39503321	39503321	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:39503321C>T	uc002hwk.1	-	4	779	c.742G>A	c.(742-744)GCC>ACC	p.A248T		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	248	Coil 2.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				ACCTGCGTGGCGAACCATTGC	0.622000													12	40					0	0	0.006122	0	0	
KRT33B	3884	broad.mit.edu	37	17	39520144	39520144	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:39520144T>G	uc002hwl.2	-	7	1204	c.1159A>C	c.(1159-1161)ACC>CCC	p.T387P		NM_002279	NP_002270	Q14525	KT33B_HUMAN	type I hair keratin 3B	387	Tail.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				CAAGGATTGGTGACACAGGAT	0.547000													19	39					0	0	0.008871	0	0	
DHX58	79132	broad.mit.edu	37	17	40256795	40256795	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:40256795A>G	uc002hyw.3	-	11	1775	c.1552T>C	c.(1552-1554)TAC>CAC	p.Y518H	DHX58_uc002hyv.3_RNA|DHX58_uc010wgf.1_Missense_Mutation_p.Y511H	NM_024119	NP_077024	Q96C10	DHX58_HUMAN	RNA helicase LGP2	518	Potential.				innate immune response	cytoplasm	ATP binding|DNA binding|helicase activity|protein binding|RNA binding|zinc ion binding				0		all_cancers(22;9.73e-07)|all_epithelial(22;3.58e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TTGGCCTGGTACTCGGCCTGG	0.637000													6	33					0	0	0.001168	0	0	
BRCA1	672	broad.mit.edu	37	17	41245719	41245719	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:41245719C>A	uc002icq.2	-	10	2061	c.1829G>T	c.(1828-1830)AGG>ATG	p.R610M	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.R539M|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.R563M|BRCA1_uc002ict.2_Missense_Mutation_p.R610M|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.R610M|BRCA1_uc002ide.1_Missense_Mutation_p.R441M|BRCA1_uc010cyy.1_Missense_Mutation_p.R610M|BRCA1_uc010whs.1_Missense_Mutation_p.R610M|BRCA1_uc010cyz.2_Missense_Mutation_p.R563M|BRCA1_uc010cza.2_Missense_Mutation_p.R584M|BRCA1_uc010wht.1_Missense_Mutation_p.R314M	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	610					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CCTCCTCAGCCTATTCTTTTT	0.373000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			29	59					4.87955e-14	5.30555e-14	0.005443	1	0	
RUNDC3A	10900	broad.mit.edu	37	17	42390848	42390848	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:42390848T>G	uc002igl.3	+	4	709	c.435T>G	c.(433-435)GCT>GCG	p.A145A	RUNDC3A_uc002igi.2_Silent_p.A145A|RUNDC3A_uc002igj.2_Silent_p.A140A|RUNDC3A_uc002igk.2_Silent_p.A141A	NM_001144825	NP_001138297	Q59EK9	RUN3A_HUMAN	RUN domain containing 3A isoform 1	145	Interaction with RAP2A (By similarity).|RUN.				small GTPase mediated signal transduction		small GTPase regulator activity				0		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		TCACCACGGCTCTGCGTGACA	0.562000													4	37					0	0	0.009096	0	0	
KIF18B	146909	broad.mit.edu	37	17	43008980	43008980	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:43008980G>A	uc010wji.1	-	11	1644	c.1543C>T	c.(1543-1545)CGT>TGT	p.R515C	KIF18B_uc002iht.2_Missense_Mutation_p.R515C|KIF18B_uc010wjh.1_Missense_Mutation_p.R503C	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				TGCTTAGAACGGTCCCCATCC	0.567000													23	68					0	0	0.003330	0	0	
NFE2L1	4779	broad.mit.edu	37	17	46135782	46135782	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:46135782G>A	uc002imz.3	+	6	1749	c.1098G>A	c.(1096-1098)GCG>GCA	p.A366A	NFE2L1_uc002ina.3_Silent_p.A336A|NFE2L1_uc002inb.3_Silent_p.A336A|NFE2L1_uc010wle.1_Silent_p.A178A|NFE2L1_uc010wlf.1_Silent_p.A210A	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	366					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						TGCATCAGGCGTCCCTGGGGG	0.612000													24	67					0	0	0.003954	0	0	
HOXB1	3211	broad.mit.edu	37	17	46607743	46607743	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:46607743G>T	uc002ink.1	-	1	530	c.524C>A	c.(523-525)CCC>CAC	p.P175H		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	175						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCGGGCCGTGGGGGTGTTAGG	0.597000													6	22					8.12818e-05	8.34754e-05	0.001984	1	0	
HOXB3	3213	broad.mit.edu	37	17	46629516	46629516	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:46629516G>A	uc002inn.2	-	1	721	c.321C>T	c.(319-321)GGC>GGT	p.G107G	HOXB3_uc010wlm.1_Silent_p.G34G|HOXB3_uc010dbf.2_Silent_p.G107G|HOXB3_uc010dbg.2_Silent_p.G107G|HOXB3_uc002ino.2_Silent_p.G107G|HOXB3_uc010wlk.1_Intron|HOXB3_uc010wll.1_Silent_p.G34G	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	107					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGCTGGGCCCGCCCCCATTAC	0.652000													57	108					0	0	0.003610	0	0	
HOXB13	10481	broad.mit.edu	37	17	46804349	46804349	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:46804349G>A	uc002ioa.2	-	2	814	c.658C>T	c.(658-660)CGC>TGC	p.R220C	hsa-mir-3185|MI0014227_5'Flank	NM_006361	NP_006352	Q92826	HXB13_HUMAN	homeobox B13	220	Homeobox.				angiogenesis|epidermis development|response to wounding		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TACGGAATGCGTTTCTTGCGG	0.617000													36	46					0	0	0.003271	0	0	
XYLT2	64132	broad.mit.edu	37	17	48433258	48433258	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:48433258T>C	uc002iqo.2	+	6	1314	c.1205T>C	c.(1204-1206)TTC>TCC	p.F402S	XYLT2_uc010dbo.2_RNA	NM_022167	NP_071450	Q9H1B5	XYLT2_HUMAN	xylosyltransferase II	402	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			pancreas(1)	1	Breast(11;7.18e-19)					TCTGACTGGTTCGTGCTGACA	0.607000													10	31					0	0	0.008291	0	0	
CUEDC1	404093	broad.mit.edu	37	17	55945510	55945510	+	Splice_Site	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:55945510C>T	uc002ivd.1	-	8	1753	c.1034_splice	c.e8+1	p.S345_splice	CUEDC1_uc002ive.1_Splice_Site_p.S345_splice	NM_017949	NP_060419	Q9NWM3	CUED1_HUMAN	CUE domain-containing 1											skin(2)	2						GGAAAGGATACGACTGATGCT	0.572000													13	28					0	0	0.001368	0	0	
C17orf71	55181	broad.mit.edu	37	17	57290673	57290673	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:57290673C>T	uc002ixi.2	+	3	2531	c.2489C>T	c.(2488-2490)GCG>GTG	p.A830V		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	830					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					AAGAGAAGTGCGGTTGTAATG	0.478000													44	97					0	0	0.011902	0	0	
PPM1D	8493	broad.mit.edu	37	17	58740617	58740617	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:58740617A>G	uc002iyt.1	+	6	1744	c.1522A>G	c.(1522-1524)ATG>GTG	p.M508V	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	508					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			AAACACTGTCATGGACCAAAA	0.378000											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	30	71					0	0	0.009535	0	0	
CCDC45	90799	broad.mit.edu	37	17	62532743	62532743	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:62532743A>C	uc002jem.2	+	18	2152	c.2094A>C	c.(2092-2094)GAA>GAC	p.E698D	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_Missense_Mutation_p.E534D	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	698						centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TGTTTGAAGAAGGTTTAAACA	0.348000													17	41					0	0	0.008871	0	0	
CACNG5	27091	broad.mit.edu	37	17	64873462	64873462	+	Silent	SNP	C	T	T	rs138908277		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:64873462C>T	uc010wqi.1	+	2	249	c.12C>T	c.(10-12)TGC>TGT	p.C4C	CACNG5_uc002jfr.2_Silent_p.C4C|CACNG5_uc010wqj.1_Silent_p.C4C	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	4					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			TGAGTGCCTGCGGGAGGAAGG	0.637000													25	39					0	0	0.004656	0	0	
PRKAR1A	5573	broad.mit.edu	37	17	66511682	66511682	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:66511682G>A	uc002jhg.2	+	2	322	c.142G>A	c.(142-144)GCA>ACA	p.A48T	PRKAR1A_uc002jhh.2_Missense_Mutation_p.A48T|PRKAR1A_uc002jhi.2_Missense_Mutation_p.A48T|PRKAR1A_uc002jhj.2_Missense_Mutation_p.A48T|PRKAR1A_uc002jhk.2_5'UTR|PRKAR1A_uc002jhl.2_Missense_Mutation_p.A48T|PRKAR1A_uc002jhm.2_Missense_Mutation_p.A48T	NM_212471	NP_997636	P10644	KAP0_HUMAN	cAMP-dependent protein kinase, regulatory	48	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter|transmembrane transport|water transport	cAMP-dependent protein kinase complex|cytosol	cAMP binding|cAMP-dependent protein kinase regulator activity|protein binding			adrenal_gland(4)|lung(3)|thyroid(2)|soft_tissue(2)|breast(1)	12	Breast(10;1.64e-13)					GAGACCCATGGCATTCCTCAG	0.438000			T|Mis|N|F|S	RET	papillary thyroid	myxoma|endocrine|papillary thyroid			Carney_Complex|Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial|Cardiac_Myxomas_Familial_Clustering_of				13	23					0	0	0.001855	0	0	
ABCA9	10350	broad.mit.edu	37	17	66980295	66980295	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:66980295A>G	uc002jhu.2	-	35	4544	c.4401T>C	c.(4399-4401)TTT>TTC	p.F1467F	ABCA9_uc010dez.2_Silent_p.F1429F	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1467	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CCGTGTTTCTAAAGGTGGCCC	0.507000													22	39					0	0	0.012319	0	0	
UBE2O	63893	broad.mit.edu	37	17	74394635	74394635	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:74394635C>A	uc002jrm.3	-	11	1879	c.1814G>T	c.(1813-1815)GGT>GTT	p.G605V	UBE2O_uc002jrn.3_Missense_Mutation_p.G605V|UBE2O_uc002jrl.3_Missense_Mutation_p.G208V	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	605							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CTGTACCACACCGTAGACAGC	0.587000											OREG0024751	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	48					1.99824e-07	2.07707e-07	0.004990	1	0	
RNF213	57674	broad.mit.edu	37	17	78319303	78319303	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:78319303G>A	uc002jyh.1	+	4	1610	c.1387G>A	c.(1387-1389)GAC>AAC	p.D463N		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CACCGACCCCGACAAAACGTA	0.527000													18	60					0	0	0.007413	0	0	
NPLOC4	55666	broad.mit.edu	37	17	79539094	79539094	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:79539094G>C	uc002kat.3	-	13	1484	c.1302C>G	c.(1300-1302)AAC>AAG	p.N434K	NPLOC4_uc002kau.3_Missense_Mutation_p.N434K|NPLOC4_uc010wur.1_Missense_Mutation_p.N273K|NPLOC4_uc002kas.2_5'Flank	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	434					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GGGTGATCTCGTTGCCAAACT	0.542000													5	12					0	0	0.000602	0	0	
DCXR	51181	broad.mit.edu	37	17	79994478	79994478	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:79994478G>A	uc002kdg.2	-	5	405	c.390C>T	c.(388-390)GCC>GCT	p.A130A		NM_016286	NP_057370	Q7Z4W1	DCXR_HUMAN	dicarbonyl/L-xylulose reductase	130					D-xylose metabolic process|glucose metabolic process|protein homotetramerization|xylulose metabolic process	membrane	binding|L-xylulose reductase (NADP+) activity				0	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0191)			CATTCACGATGGCCCCTGGGA	0.532000													21	43					0	0	0.012319	0	0	
HEXDC	284004	broad.mit.edu	37	17	80397570	80397570	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:80397570C>T	uc002kew.2	+	8	1014	c.963C>T	c.(961-963)TGC>TGT	p.C321C	HEXDC_uc002kev.3_Silent_p.C321C|HEXDC_uc010diq.2_Silent_p.C321C|HEXDC_uc010wvm.1_RNA|HEXDC_uc010wvn.1_Silent_p.C84C			Q8WVB3	HEXDC_HUMAN	SubName: Full=Hexosaminidase (Glycosyl hydrolase family 20, catalytic domain) containing, isoform CRA_c; SubName: Full=Hexosaminidase D;	321					carbohydrate metabolic process	cytoplasm|nucleus	beta-N-acetylhexosaminidase activity|cation binding			ovary(1)|skin(1)	2	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			TGGCCGCCTGCCTGCAGTTGC	0.682000													21	64					0	0	0.012319	0	0	
ENOSF1	55556	broad.mit.edu	37	18	683287	683287	+	Missense_Mutation	SNP	T	A	A	rs146518307	by1000genomes	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:683287T>A	uc002kku.3	-	11	910	c.835A>T	c.(835-837)ACC>TCC	p.T279S	ENOSF1_uc002kkt.3_Missense_Mutation_p.T197S|ENOSF1_uc010dke.2_RNA|ENOSF1_uc010dkf.2_Missense_Mutation_p.T300S|ENOSF1_uc002kkv.3_Missense_Mutation_p.T266S|ENOSF1_uc002kkw.3_Missense_Mutation_p.T98S|ENOSF1_uc002kkx.3_Missense_Mutation_p.T203S	NM_017512	NP_059982	Q7L5Y1	ENOF1_HUMAN	enolase superfamily 1 isoform rTS beta	279					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			ovary(1)	1						TCAGGGGAGGTTGGCTCCTCA	0.532000													37	76					0	0	0.006230	0	0	
LAMA1	284217	broad.mit.edu	37	18	6959369	6959369	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:6959369C>T	uc002knm.2	-	54	7843	c.7749G>A	c.(7747-7749)GCG>GCA	p.A2583A	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Silent_p.A36A|LAMA1_uc010wzj.1_Silent_p.A2059A	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2583	Laminin G-like 3.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGATGGAATGCGCTTGTCCAT	0.562000													30	81					0	0	0.007291	0	0	
TUBB6	84617	broad.mit.edu	37	18	12325590	12325590	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:12325590C>T	uc002kqw.2	+	4	847	c.802C>T	c.(802-804)CCT>TCT	p.P268S	TUBB6_uc002kqv.2_Missense_Mutation_p.P196S|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.P231S|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	268					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		CTTCTTCATGCCTGGCTTCGC	0.672000													8	58					0	0	0.004482	0	0	
MEP1B	4225	broad.mit.edu	37	18	29788119	29788119	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:29788119A>G	uc002kxj.3	+	9	851	c.804A>G	c.(802-804)GAA>GAG	p.E268E		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	268	Extracellular (Potential).|MAM.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						GCAGTTTTGAACTGGAAAATG	0.413000													57	131					0	0	0.003610	0	0	
FAM59A	64762	broad.mit.edu	37	18	29850274	29850274	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:29850274G>A	uc002kxl.2	-	5	1695	c.1639C>T	c.(1639-1641)CCC>TCC	p.P547S	FAM59A_uc002kxk.1_Missense_Mutation_p.P547S	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	547	Pro-rich.									ovary(1)|skin(1)	2						GGGATGGAGGGACTGGTGGAC	0.572000													12	6					0	0	0.001368	0	0	
ELP2	55250	broad.mit.edu	37	18	33744530	33744530	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:33744530G>A	uc002kzk.1	+	18	1864	c.1854G>A	c.(1852-1854)ACG>ACA	p.T618T	ELP2_uc010xcg.1_Silent_p.T683T|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Silent_p.T592T|ELP2_uc010xch.1_Silent_p.T613T|ELP2_uc002kzn.1_Silent_p.T548T|ELP2_uc002kzo.1_Silent_p.T548T	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	618	WD 11.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						TGACAGTCACGCAGATGGCCT	0.433000													34	89					0	0	0.003271	0	0	
FHOD3	80206	broad.mit.edu	37	18	34349306	34349306	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:34349306G>A	uc002kzt.1	+	23	4200	c.4103G>A	c.(4102-4104)CGC>CAC	p.R1368H	FHOD3_uc002kzs.1_Missense_Mutation_p.R1385H|FHOD3_uc010dmz.1_Missense_Mutation_p.R1100H|FHOD3_uc010dnb.1_Missense_Mutation_p.A306T	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1368	DAD.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				ATCATGGACCGCATCGTCAAG	0.517000													29	45					0	0	0.006320	0	0	
SETBP1	26040	broad.mit.edu	37	18	42532660	42532660	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:42532660G>T	uc010dni.2	+	4	3651	c.3355G>T	c.(3355-3357)GGA>TGA	p.G1119*		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1119						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		ACACCTGCAGGGACCTGTTAG	0.547000									Schinzel-Giedion_syndrome				19	52					1.87028e-06	1.93526e-06	0.012319	1	0	
ZBTB7C	201501	broad.mit.edu	37	18	45567019	45567019	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:45567019C>T	uc002lda.2	-	1	476	c.460G>A	c.(460-462)GAA>AAA	p.E154K	ZBTB7C_uc002ldb.2_Missense_Mutation_p.E154K|ZBTB7C_uc010dnu.2_Missense_Mutation_p.E163K|ZBTB7C_uc010dnv.2_Missense_Mutation_p.E176K|ZBTB7C_uc010dnw.2_Missense_Mutation_p.E154K|ZBTB7C_uc010dnx.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dny.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dnz.1_Missense_Mutation_p.E176K|ZBTB7C_uc010dob.1_Missense_Mutation_p.E154K|ZBTB7C_uc010doc.1_Missense_Mutation_p.E163K|ZBTB7C_uc010dod.1_Missense_Mutation_p.E176K|ZBTB7C_uc010doe.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dof.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dog.1_Missense_Mutation_p.E154K|ZBTB7C_uc010doh.1_Missense_Mutation_p.E163K|ZBTB7C_uc010doi.1_Missense_Mutation_p.E154K|ZBTB7C_uc010doj.1_Missense_Mutation_p.E163K|ZBTB7C_uc010dok.1_Missense_Mutation_p.E203K|ZBTB7C_uc010dol.1_Missense_Mutation_p.E163K|ZBTB7C_uc010doa.1_Missense_Mutation_p.E176K|ZBTB7C_uc010don.1_Missense_Mutation_p.E162K|ZBTB7C_uc010doo.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dop.1_Missense_Mutation_p.E154K|ZBTB7C_uc010doq.1_Missense_Mutation_p.E163K|ZBTB7C_uc010dor.1_Missense_Mutation_p.E176K|ZBTB7C_uc010dos.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dot.1_Missense_Mutation_p.E154K|ZBTB7C_uc010dou.1_Missense_Mutation_p.E163K|ZBTB7C_uc010dom.1_Missense_Mutation_p.E163K	NM_001039360	NP_001034449	A1YPR0	ZBT7C_HUMAN	zinc finger and BTB domain containing 7C	154	Glu-rich.|Asp-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						tcctcctcttcgtcctcctca	0.284000													12	33					0	0	0.001368	0	0	
CXXC1	30827	broad.mit.edu	37	18	47809075	47809075	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:47809075C>A	uc002leq.3	-	15	2592	c.1859G>T	c.(1858-1860)CGC>CTC	p.R620L	MBD1_uc002leg.2_5'Flank|MBD1_uc010dow.1_5'Flank|MBD1_uc010xdi.1_5'Flank|MBD1_uc002leh.3_5'Flank|MBD1_uc002len.2_5'Flank|MBD1_uc002lei.3_5'Flank|MBD1_uc002lej.3_5'Flank|MBD1_uc002lek.3_5'Flank|MBD1_uc002lel.3_5'Flank|MBD1_uc002lem.3_5'Flank|MBD1_uc010xdj.1_5'Flank|MBD1_uc010xdk.1_5'Flank|MBD1_uc010dox.1_5'Flank|MBD1_uc002leo.2_5'Flank|CXXC1_uc002lep.3_Missense_Mutation_p.R477L|CXXC1_uc002ler.3_Missense_Mutation_p.R624L|CXXC1_uc010doy.2_Missense_Mutation_p.A608S	NM_014593	NP_055408	Q9P0U4	CXXC1_HUMAN	CXXC finger 1 (PHD domain) isoform 2	620					histone H3-K4 methylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|Set1C/COMPASS complex	protein binding|unmethylated CpG binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GCGCACATTGCGCTCCTGCTC	0.642000													14	24					4.3838e-07	4.54985e-07	0.001855	1	0	
RAX	30062	broad.mit.edu	37	18	56939817	56939817	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:56939817C>T	uc002lhx.2	-	2	506	c.319G>A	c.(319-321)GGG>AGG	p.G107R	RAX_uc010dpp.2_Intron	NM_013435	NP_038463	Q9Y2V3	RX_HUMAN	retina and anterior neural fold homeobox	107				G -> W (in Ref. 1; AAD23438).	visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1		Lung NSC(161;0.0804)|Colorectal(73;0.0946)		STAD - Stomach adenocarcinoma(84;0.18)		CGTGCCTCCCCGGGCTCCTTG	0.697000													18	30					0	0	0.006122	0	0	
SERPINB3	6317	broad.mit.edu	37	18	61322973	61322973	+	Missense_Mutation	SNP	T	C	C	rs61733404	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:61322973T>C	uc002lji.2	-	8	1235	c.1091A>G	c.(1090-1092)CAT>CGT	p.H364R	SERPINB4_uc002ljg.2_Intron|SERPINB3_uc010dqa.2_Missense_Mutation_p.H312R	NM_006919	NP_008850	P29508	SPB3_HUMAN	serine (or cysteine) proteinase inhibitor, clade	364					regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GTGATTACAATGGAACTCTTC	0.458000													41	97					0	0	0.010771	0	0	
RTTN	25914	broad.mit.edu	37	18	67715346	67715346	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:67715346A>C	uc002lkp.2	-	40	5470	c.5402T>G	c.(5401-5403)CTC>CGC	p.L1801R	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_Missense_Mutation_p.L889R|RTTN_uc010dqp.2_Missense_Mutation_p.L53R	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	1801							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				TTCGGTCAAGAGAACAGAAAG	0.443000													13	48					0	0	0.001855	0	0	
SALL3	27164	broad.mit.edu	37	18	76754516	76754516	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:76754516C>T	uc002lmt.2	+	2	2525	c.2525C>T	c.(2524-2526)GCC>GTC	p.A842V	SALL3_uc010dra.2_Missense_Mutation_p.A449V	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	842					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		AGCATTGCCGCCCTGGAGAAC	0.672000													14	25					0	0	0.004007	0	0	
KCNG2	26251	broad.mit.edu	37	18	77659548	77659548	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:77659548G>A	uc010xfl.1	+	2	1133	c.1133G>A	c.(1132-1134)CGC>CAC	p.R378H		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	378					energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		ATGGTCCCGCGCAGCCTGCCC	0.687000													4	34					0	0	0.009096	0	0	
KCNG2	26251	broad.mit.edu	37	18	77659577	77659577	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:77659577A>G	uc010xfl.1	+	2	1162	c.1162A>G	c.(1162-1164)AGC>GGC	p.S388G		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	388	Helical; Name=Segment S6; (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		GGTGGCGCTCAGCAGCATCCT	0.662000													10	34					0	0	0.006214	0	0	
MIDN	90007	broad.mit.edu	37	19	1257208	1257208	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:1257208C>T	uc002lrp.2	+	8	1859	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F		NM_177401	NP_796375	Q504T8	MIDN_HUMAN	midnolin	448						nucleolus					0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCGACTTCGAGGACTCCG	0.672000													17	48					0	0	0.004990	0	0	
ZFR2	23217	broad.mit.edu	37	19	3823259	3823259	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:3823259C>T	uc002lyw.2	-	8	1368	c.1356G>A	c.(1354-1356)CCG>CCA	p.P452P	ZFR2_uc010xhx.1_RNA	NM_015174	NP_055989	Q9UPR6	ZFR2_HUMAN	zinc finger RNA binding protein 2 isoform 1	452						intracellular	nucleic acid binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00514)|STAD - Stomach adenocarcinoma(1328;0.19)		CCACATATTCCGGGCCCACCG	0.617000													35	71					0	0	0.006999	0	0	
SEMA6B	10501	broad.mit.edu	37	19	4548310	4548310	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:4548310G>A	uc010duc.1	-	12	1457	c.1419C>T	c.(1417-1419)GTC>GTT	p.V473V	SEMA6B_uc010dud.2_Silent_p.V473V|SEMA6B_uc010xih.1_Silent_p.V473V	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	473	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCCAGGAAGACACTGAGCC	0.627000													14	41					0	0	0.003163	0	0	
KDM4B	23030	broad.mit.edu	37	19	5039897	5039897	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:5039897C>T	uc002mbq.3	+	4	418	c.192C>T	c.(190-192)GAC>GAT	p.D64D	KDM4B_uc010xil.1_Silent_p.D64D|KDM4B_uc010xim.1_Silent_p.D64D	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	64					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						ATGACATCGACGACGTGGTGA	0.612000													27	48					0	0	0.007291	0	0	
SAFB	6294	broad.mit.edu	37	19	5668284	5668284	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:5668284C>T	uc002mcf.2	+	21	2783	c.2730C>T	c.(2728-2730)CGC>CGT	p.R910R	SAFB_uc002mcg.2_Silent_p.R912R|SAFB_uc002mce.3_Silent_p.R911R|SAFB_uc010xir.1_Silent_p.R909R|SAFB_uc010xis.1_Silent_p.R843R|SAFB_uc010xit.1_Silent_p.R754R|SAFB_uc010xiu.1_Silent_p.R711R	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	910	Interaction with SAFB2.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		GCGATGCCCGCTTCACTCGCC	0.592000													19	27					0	0	0.006122	0	0	
MYO1F	4542	broad.mit.edu	37	19	8616964	8616964	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:8616964C>T	uc002mkg.2	-	7	703	c.589G>A	c.(589-591)GTG>ATG	p.V197M	MYO1F_uc002mkh.2_Missense_Mutation_p.V197M|MYO1F_uc010xkf.1_Missense_Mutation_p.V197M	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	197	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TGCATGACCACGCGGGACTTC	0.577000													20	63					0	0	0.008871	0	0	
MYO1F	4542	broad.mit.edu	37	19	8619568	8619568	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:8619568G>A	uc002mkg.2	-	3	315	c.201C>T	c.(199-201)ACC>ACT	p.T67T	MYO1F_uc002mkh.2_Silent_p.T67T|MYO1F_uc010xkf.1_Silent_p.T67T	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	67	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TCTCACGGTCGGTGAAGTAGG	0.612000													20	45					0	0	0.008871	0	0	
OR7G2	390882	broad.mit.edu	37	19	9213400	9213400	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:9213400T>G	uc010xkk.1	-	1	583	c.583A>C	c.(583-585)ATC>CTC	p.I195L		NM_001005193	NP_001005193	Q8NG99	OR7G2_HUMAN	olfactory receptor, family 7, subfamily G,	174	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAGAGCGGGATTTCCAGGTCT	0.478000													15	42					0	0	0.002450	0	0	
CDKN2D	1032	broad.mit.edu	37	19	10677793	10677793	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:10677793G>A	uc002mpa.2	-	2	744	c.442C>T	c.(442-444)CAG>TAG	p.Q148*	KRI1_uc002mox.1_5'Flank|KRI1_uc002moy.1_5'Flank|CDKN2D_uc002mpb.2_Nonsense_Mutation_p.Q148*	NM_001800	NP_001791	P55273	CDN2D_HUMAN	cyclin-dependent kinase inhibitor 2D	148	ANK 4.				anti-apoptosis|autophagic cell death|cell cycle arrest|DNA synthesis involved in DNA repair|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|negative regulation of caspase activity|negative regulation of cell growth|negative regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity|response to retinoic acid|response to UV|response to vitamin D	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|protein kinase binding				0			Epithelial(33;1.58e-05)|all cancers(31;6.36e-05)			GCCCCTCTCTGCAGTGCCAGC	0.612000									Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System				33	55					0	0	0.012213	0	0	
ELAVL3	1995	broad.mit.edu	37	19	11565638	11565638	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:11565638G>A	uc002mry.1	-	7	1187	c.807C>T	c.(805-807)GGC>GGT	p.G269G	ELAVL3_uc002mrx.1_Silent_p.G262G	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	269					cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						CGCCCGCCAGGCCGCTCATAC	0.577000													36	117					0	0	0.005524	0	0	
ZNF700	90592	broad.mit.edu	37	19	12059372	12059372	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:12059372G>A	uc002msu.2	+	4	659	c.533G>A	c.(532-534)CGC>CAC	p.R178H	ZNF700_uc010xme.1_Missense_Mutation_p.R196H|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	178					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGGTATCGCCCATCCATT	0.403000													42	120					0	0	0.006999	0	0	
DAND5	199699	broad.mit.edu	37	19	13084268	13084268	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:13084268C>A	uc002mwc.1	+	2	433	c.390C>A	c.(388-390)TCC>TCA	p.S130S	DAND5_uc010dyz.1_3'UTR	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	130	CTCK.					extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			GTCATTGCTCCTCTCTCTACA	0.627000													27	70					7.92952e-12	8.44747e-12	0.003954	1	0	
CC2D1A	54862	broad.mit.edu	37	19	14034616	14034616	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:14034616C>T	uc002mxo.2	+	17	2231	c.1932C>T	c.(1930-1932)AGC>AGT	p.S644S	CC2D1A_uc002mxp.2_Silent_p.S644S|CC2D1A_uc010dzh.2_Silent_p.S213S|CC2D1A_uc002mxq.1_Silent_p.S289S	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	644	C2.				positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			GGACCTTCAGCGTCATCAAGT	0.622000													18	53					0	0	0.010504	0	0	
CYP4F22	126410	broad.mit.edu	37	19	15651358	15651358	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:15651358C>T	uc002nbh.3	+	8	936	c.769C>T	c.(769-771)CGC>TGC	p.R257C		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	257						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						CATTTACTACCGCTCGGCGGA	0.582000													21	71					0	0	0.002299	0	0	
SIN3B	23309	broad.mit.edu	37	19	16980624	16980624	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:16980624G>A	uc002ney.1	+	14	2270	c.2256G>A	c.(2254-2256)CCG>CCA	p.P752P	SIN3B_uc002nez.1_Silent_p.P720P|SIN3B_uc010xpi.1_Silent_p.P310P	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	752					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						GGGATGCCCCGGCCACTGAGC	0.662000													12	19					0	0	0.001368	0	0	
CPAMD8	27151	broad.mit.edu	37	19	17038831	17038831	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:17038831C>T	uc002nfb.2	-	25	3531	c.3499G>A	c.(3499-3501)GCC>ACC	p.A1167T		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1120						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						ATGATGGAGGCGGTGGCTCGC	0.622000													14	34					0	0	0.002450	0	0	
LRRC25	126364	broad.mit.edu	37	19	18502843	18502843	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:18502843C>T	uc002niw.2	-	2	1514	c.872G>A	c.(871-873)GGC>GAC	p.G291D	LRRC25_uc002nix.2_Missense_Mutation_p.G291D	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	291	Cytoplasmic (Potential).					integral to membrane					0						TGGGGCCTGGCCCAGTGACTG	0.532000													5	21					0	0	0.000602	0	0	
NCAN	1463	broad.mit.edu	37	19	19338531	19338531	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:19338531C>G	uc002nlz.2	+	8	2201	c.2102C>G	c.(2101-2103)CCC>CGC	p.P701R	NCAN_uc010ecc.1_Missense_Mutation_p.P265R	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	701					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CCTGAGTCCCCCAGGGCAGAC	0.587000													23	61					0	0	0.012319	0	0	
ZNF14	7561	broad.mit.edu	37	19	19822525	19822525	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:19822525T>C	uc002nnk.1	-	4	1719	c.1565A>G	c.(1564-1566)GAA>GGA	p.E522G		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	522	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				GTGAATTTTTTCATGTTCTCG	0.408000													8	147					0	0	0.003080	0	0	
ZNF626	199777	broad.mit.edu	37	19	20808310	20808310	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:20808310C>T	uc002npb.1	-	4	523	c.373G>A	c.(373-375)GTG>ATG	p.V125M	ZNF626_uc002npc.1_Missense_Mutation_p.V49M	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TCTTTGTGCACCTTACACTCA	0.318000													25	102					0	0	0.003330	0	0	
RPSAP58	388524	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:24010294C>G	uc002nrn.2	+	4	754	c.331C>G	c.(331-333)CAG>GAG	p.Q111E		NM_002295	NP_002286			ribosomal protein SA												0						CTTCACTAACCAGATCCAGGC	0.567000													4	57					0	0	0.009096	0	0	
CHST8	64377	broad.mit.edu	37	19	34263898	34263898	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:34263898G>A	uc002nus.3	+	5	1710	c.1205G>A	c.(1204-1206)CGC>CAC	p.R402H	CHST8_uc002nut.3_Missense_Mutation_p.R402H|CHST8_uc002nuu.2_Missense_Mutation_p.R402H	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	402	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CAAAGGCAGCGCACCTACGAC	0.622000													13	19					0	0	0.001368	0	0	
LSR	51599	broad.mit.edu	37	19	35741230	35741230	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:35741230C>T	uc002nyl.2	+	2	489	c.266C>T	c.(265-267)GCC>GTC	p.A89V	LSR_uc002nym.2_Missense_Mutation_p.A89V|LSR_uc002nyn.2_Missense_Mutation_p.A89V|LSR_uc002nyo.2_Missense_Mutation_p.A89V|LSR_uc010xsr.1_Missense_Mutation_p.A89V|LSR_uc002nyp.2_Missense_Mutation_p.A52V	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	89	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CCTGCCAGGGCCATCCAGGTG	0.612000													69	231					0	0	0.003610	0	0	
USF2	7392	broad.mit.edu	37	19	35761435	35761435	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:35761435C>T	uc002nyq.1	+	5	624	c.515C>T	c.(514-516)GCG>GTG	p.A172V	USF2_uc010xss.1_Missense_Mutation_p.A172V|USF2_uc002nyr.1_Missense_Mutation_p.A105V|USF2_uc002nys.1_5'UTR|USF2_uc002nyt.1_Intron|USF2_uc002nyu.1_5'UTR|USF2_uc002nyv.1_5'UTR	NM_003367	NP_003358	Q15853	USF2_HUMAN	upstream stimulatory factor 2 isoform 1	172					lipid homeostasis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter by glucose	nucleus	bHLH transcription factor binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity				0	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)		Epithelial(14;7.4e-20)|OV - Ovarian serous cystadenocarcinoma(14;6.47e-19)|all cancers(14;4.17e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			TATTTCCCAGCGTCCAGTGTG	0.597000													16	30					0	0	0.004990	0	0	
GAPDHS	26330	broad.mit.edu	37	19	36027833	36027833	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:36027833C>T	uc002oaf.1	+	2	302	c.186C>T	c.(184-186)CCC>CCT	p.P62P		NM_014364	NP_055179	O14556	G3PT_HUMAN	glyceraldehyde-3-phosphate dehydrogenase,	62					gluconeogenesis|glycolysis|positive regulation of glycolysis|sperm motility	cytosol	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		NADH(DB00157)	CTCCTCACCCCGCTACTCCTC	0.592000													24	60					0	0	0.006320	0	0	
LRFN3	79414	broad.mit.edu	37	19	36430331	36430331	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:36430331G>A	uc002oco.2	+	2	456	c.4G>A	c.(4-6)GCC>ACC	p.A2T		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	2					cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCCCGCGATGGCCATCCTCCC	0.697000													34	42					0	0	0.003755	0	0	
ZNF585B	92285	broad.mit.edu	37	19	37676954	37676954	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:37676954T>C	uc002ofq.2	-	5	1739	c.1485A>G	c.(1483-1485)ATA>ATG	p.I495M	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.I309M	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	495	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATTTGGAACATATATAAGATT	0.408000													30	77					0	0	0.008361	0	0	
ZNF569	148266	broad.mit.edu	37	19	37917233	37917233	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:37917233C>T	uc002ogi.2	-	4	621	c.63G>A	c.(61-63)GAG>GAA	p.E21E	ZNF569_uc002ogh.2_Intron|ZNF569_uc002ogj.2_Silent_p.E45E	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	21	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ATCTCTTCCACTCCTCCTGAG	0.398000													25	64					0	0	0.003330	0	0	
SIPA1L3	23094	broad.mit.edu	37	19	38621191	38621191	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:38621191C>T	uc002ohk.2	+	10	3431	c.2922C>T	c.(2920-2922)CTC>CTT	p.L974L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	974	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGAACGGGCTCGGGCAGCTGG	0.667000													18	52					0	0	0.006122	0	0	
ACTN4	81	broad.mit.edu	37	19	39191313	39191313	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:39191313G>A	uc002oja.1	+	2	295	c.236G>A	c.(235-237)CGA>CAA	p.R79Q	ACTN4_uc010egc.1_Missense_Mutation_p.R79Q	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	79	Actin-binding.|CH 1.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GAGGACTTCCGAGACGGGCTC	0.607000													25	43					0	0	0.004656	0	0	
FCGBP	8857	broad.mit.edu	37	19	40399803	40399803	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:40399803C>T	uc002omp.3	-	13	5900	c.5892G>A	c.(5890-5892)CCG>CCA	p.P1964P		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1964	TIL 4.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GACAGCTGGCCGGGCAGGGTG	0.607000													6	15					0	0	0.006122	0	0	
C19orf47	126526	broad.mit.edu	37	19	40832311	40832311	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:40832311G>A	uc002oni.3	-	7	634	c.633C>T	c.(631-633)TAC>TAT	p.Y211Y	C19orf47_uc002ong.2_Silent_p.Y70Y|C19orf47_uc002onh.2_Silent_p.Y144Y	NM_178830	NP_849152	Q8N9M1	CS047_HUMAN	hypothetical protein LOC126526	211										ovary(1)|skin(1)	2			Lung(22;0.000636)			TGTTGATGACGTACTTCCCCT	0.647000													6	29					0	0	0.001168	0	0	
CYP2A6	1548	broad.mit.edu	37	19	41349705	41349705	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:41349705C>T	uc002opl.3	-	9	1502	c.1481G>A	c.(1480-1482)CGC>CAC	p.R494H		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	494					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	CCTCGCTCAGCGGGGCAGGAA	0.652000													23	62					0	0	0.006320	0	0	
AXL	558	broad.mit.edu	37	19	41726691	41726691	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:41726691C>T	uc010ehj.2	+	2	426	c.236C>T	c.(235-237)GCG>GTG	p.A79V	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Missense_Mutation_p.A79V|AXL_uc010ehk.2_Missense_Mutation_p.A79V	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	79	Extracellular (Potential).|Interaction with GAS6.|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CTGGAGCTCGCGGACAGCACC	0.637000													14	20					0	0	0.001855	0	0	
PSG11	5680	broad.mit.edu	37	19	43519387	43519387	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:43519387G>T	uc002ovm.1	-	4	952	c.845C>A	c.(844-846)TCA>TAA	p.S282*	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Nonsense_Mutation_p.S288*|PSG11_uc002ovo.1_Nonsense_Mutation_p.S160*|PSG11_uc002ovp.1_Nonsense_Mutation_p.S160*	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	282	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CTTTTGTCCTGATAGCTGAAA	0.468000													63	167					3.30712e-30	3.73824e-30	0.003610	1	0	
ZNF284	342909	broad.mit.edu	37	19	44590402	44590402	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:44590402A>C	uc002oyg.1	+	5	987	c.771A>C	c.(769-771)AAA>AAC	p.K257N	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				CAGGAGAAAAACCTCATATTT	0.418000													35	78					0	0	0.012213	0	0	
BCAM	4059	broad.mit.edu	37	19	45316790	45316790	+	Missense_Mutation	SNP	G	A	A	rs144233028		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:45316790G>A	uc002ozu.2	+	6	741	c.697G>A	c.(697-699)GCC>ACC	p.A233T	BCAM_uc002ozt.1_Missense_Mutation_p.A233T	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	233	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				TGACCGAGACGCCAGCTTCCA	0.697000													22	48					0	0	0.012319	0	0	
IGFL4	444882	broad.mit.edu	37	19	46543796	46543796	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:46543796G>C	uc002pdy.1	-	2	104	c.50C>G	c.(49-51)TCA>TGA	p.S17*		NM_001002923	NP_001002923	Q6B9Z1	IGFL4_HUMAN	IGF-like family member 4 precursor	17						extracellular region					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.0036)|GBM - Glioblastoma multiforme(486;0.022)|Epithelial(262;0.208)		TTCTGAGTTTGAACCCAAAAG	0.517000													16	49					0	0	0.004007	0	0	
AP2A1	160	broad.mit.edu	37	19	50309974	50309974	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:50309974G>A	uc002ppn.2	+	24	3104	c.2893G>A	c.(2893-2895)GTC>ATC	p.V965I	AP2A1_uc002ppo.2_Missense_Mutation_p.V943I|AP2A1_uc010enk.2_Missense_Mutation_p.V96I	NM_014203	NP_055018	O95782	AP2A1_HUMAN	adaptor-related protein complex 2, alpha 1	965				ENFVGAGIIQTKALQVGCLLRLEPNAQAQMYRLTLRTSKEP VSRHLCELLAQQF -> GDREDTRVWGMPGTFLRPFVFLFL FICCCLHSGGLGGVPLPPFPPQAQRGEGPGKWMSPPLPPHP VVAPPTPSPSRGCVLL (in Ref. 4; AAH14214).	axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|Golgi to endosome transport|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|clathrin coat of trans-Golgi network vesicle|cytosol	protein binding|protein transporter activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0023)|GBM - Glioblastoma multiforme(134;0.0157)		CAAGGAGCCCGTCTCCCGTCA	0.667000													19	43					0	0	0.002299	0	0	
SYT3	84258	broad.mit.edu	37	19	51136065	51136065	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:51136065A>C	uc002pst.2	-	2	786	c.152T>G	c.(151-153)ATC>AGC	p.I51S	SYT3_uc002psv.2_Missense_Mutation_p.I51S|SYT3_uc010ycd.1_Missense_Mutation_p.I51S	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	51	Vesicular (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GCTCACGGAGATGTCTGGAGA	0.512000													5	65					0	0	0.000602	0	0	
KLK7	5650	broad.mit.edu	37	19	51483543	51483543	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:51483543C>T	uc002puo.2	-	4	524	c.422G>A	c.(421-423)GGA>GAA	p.G141E	KLK7_uc002pup.2_Missense_Mutation_p.G141E|KLK7_uc010yco.1_Missense_Mutation_p.G15E|KLK7_uc010eok.2_Missense_Mutation_p.G69E	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	141	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		ACAGGTGGTTCCAGGGGGTTC	0.458000													8	24					0	0	0.004482	0	0	
ZNF808	388558	broad.mit.edu	37	19	53050772	53050772	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:53050772T>C	uc010epq.1	+	4	248	c.71T>C	c.(70-72)TTG>TCG	p.L24S	ZNF808_uc002pzq.2_Intron	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		TAGGGACGCTTGACTTTCAGG	0.393000													45	100					0	0	0.003610	0	0	
MIR1283-1	100302265	broad.mit.edu	37	19	54191791	54191791	+	RNA	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:54191791C>T	hsa-mir-1283-1|MI0003832	+			c.57C>T			MIR520A_hsa-mir-520a|MI0003149_5'Flank																	0						GAAGAGAAAGCGCTTCCCTTT	0.423000													33	53					0	0	0.002836	0	0	
MIR526A2	574486	broad.mit.edu	37	19	54230198	54230198	+	RNA	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:54230198T>C	hsa-mir-526a-2|MI0003168	+			c.23T>C			MIR518E_hsa-mir-518e|MI0003169_5'Flank																	0						AGGGAAGCACTTTCTGTTGAA	0.408000													39	69					0	0	0.007835	0	0	
NLRP11	204801	broad.mit.edu	37	19	56320425	56320425	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:56320425C>A	uc010ygf.1	-	5	2262	c.1551G>T	c.(1549-1551)ATG>ATT	p.M517I	NLRP11_uc002qlz.2_Missense_Mutation_p.M418I|NLRP11_uc002qmb.2_Missense_Mutation_p.M418I|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	517							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AGCTGTCTACCATCGGTAGCT	0.408000													40	133					2.6416e-12	2.82734e-12	0.006230	1	0	
ZNF71	58491	broad.mit.edu	37	19	57134038	57134038	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:57134038G>A	uc002qnm.3	+	3	1621	c.1383G>A	c.(1381-1383)ACG>ACA	p.T461T		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	461						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		GGATCCACACGGGCGAGAAGC	0.637000													15	44					0	0	0.004990	0	0	
ZNF135	7694	broad.mit.edu	37	19	58579087	58579087	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:58579087G>A	uc010yhq.1	+	5	1367	c.1271G>A	c.(1270-1272)TGT>TAT	p.C424Y	ZNF135_uc002qre.2_Missense_Mutation_p.C412Y|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Missense_Mutation_p.C370Y|ZNF135_uc002qrg.2_Missense_Mutation_p.C382Y|ZNF135_uc010yhr.1_Missense_Mutation_p.C233Y	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	424					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		CCCTATGAGTGTGGTGAGTGT	0.537000													15	45					0	0	0.002450	0	0	
ZBTB45	84878	broad.mit.edu	37	19	59028938	59028938	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:59028938C>T	uc002qtd.2	-	2	395	c.103G>A	c.(103-105)GTG>ATG	p.V35M	ZBTB45_uc002qte.2_Missense_Mutation_p.V35M|ZBTB45_uc002qtf.2_Missense_Mutation_p.V35M	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	35	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		CGCACAGTCACGTCACAGAAG	0.612000											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	30					0	0	0.004990	0	0	
PXDN	7837	broad.mit.edu	37	2	1652889	1652889	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:1652889C>T	uc002qxa.2	-	17	2727	c.2663G>A	c.(2662-2664)GGC>GAC	p.G888D		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	888					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CGAAGTCATGCCGCTGCCGCA	0.632000													7	16					0	0	0.004482	0	0	
LPIN1	23175	broad.mit.edu	37	2	11907961	11907961	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:11907961G>A	uc010yjn.1	+	4	539	c.265G>A	c.(265-267)GTT>ATT	p.V89I	LPIN1_uc010yjm.1_Missense_Mutation_p.V138I|LPIN1_uc002rbt.2_Missense_Mutation_p.V89I|LPIN1_uc002rbs.2_Missense_Mutation_p.V89I	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	89	N-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		AGCATTTTTTGTTCAAGAAAC	0.393000													19	51					0	0	0.008871	0	0	
DTNB	1838	broad.mit.edu	37	2	25650468	25650468	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:25650468G>A	uc002rgh.2	-	15	1740	c.1490C>T	c.(1489-1491)TCG>TTG	p.S497L	DTNB_uc002rgg.2_Missense_Mutation_p.S126L|DTNB_uc010yko.1_Missense_Mutation_p.S440L|DTNB_uc010ykp.1_Missense_Mutation_p.S293L|DTNB_uc002rgo.2_Missense_Mutation_p.S288L|DTNB_uc002rgi.2_Missense_Mutation_p.S497L|DTNB_uc002rgj.2_Missense_Mutation_p.S497L|DTNB_uc002rgk.2_Missense_Mutation_p.S467L|DTNB_uc002rgl.2_Missense_Mutation_p.S467L|DTNB_uc002rgq.2_Missense_Mutation_p.S497L|DTNB_uc002rgm.2_Missense_Mutation_p.S467L|DTNB_uc002rgn.2_Missense_Mutation_p.S293L|DTNB_uc002rgr.1_Missense_Mutation_p.S486L|DTNB_uc010ykq.1_Missense_Mutation_p.S350L|DTNB_uc002rgp.1_Missense_Mutation_p.S2L	NM_021907	NP_068707	O60941	DTNB_HUMAN	dystrobrevin, beta isoform 1	497	Potential.					cytoplasm	calcium ion binding|zinc ion binding			large_intestine(2)|ovary(2)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGCAGGGCCGACATCCTCTG	0.473000													16	42					0	0	0.007413	0	0	
OTOF	9381	broad.mit.edu	37	2	26699057	26699057	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:26699057C>A	uc002rhk.2	-	23	2932	c.2805G>T	c.(2803-2805)GAG>GAT	p.E935D	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Missense_Mutation_p.E188D|OTOF_uc002rhi.2_Missense_Mutation_p.E245D|OTOF_uc002rhj.2_Missense_Mutation_p.E188D	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	935	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGCCTTGACCTCCTGGAAGC	0.652000													7	24					8.12818e-05	8.34754e-05	0.001984	1	0	
PREB	10113	broad.mit.edu	37	2	27355197	27355197	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:27355197T>C	uc002rix.1	-	6	1080	c.827A>G	c.(826-828)CAG>CGG	p.Q276R	PREB_uc002riy.1_Missense_Mutation_p.Q204R|PREB_uc002riz.1_RNA|PREB_uc002rja.1_Intron	NM_013388	NP_037520	Q9HCU5	PREB_HUMAN	prolactin regulatory element binding protein	276	Cytoplasmic (Potential).				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane|nucleus	DNA binding|guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGGAGGGGGCTGGCGCAGGCG	0.622000													24	57					0	0	0.003330	0	0	
CCDC88A	55704	broad.mit.edu	37	2	55544857	55544857	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:55544857G>A	uc002ryv.2	-	20	4284	c.3442C>T	c.(3442-3444)CTA>TTA	p.L1148L	CCDC88A_uc010yoz.1_Silent_p.L1149L|CCDC88A_uc010ypa.1_Silent_p.L1148L|CCDC88A_uc002ryu.2_Silent_p.L431L|CCDC88A_uc002rys.2_Silent_p.L134L|CCDC88A_uc002ryw.2_Silent_p.L432L|CCDC88A_uc010fby.1_Silent_p.L28L	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	1149	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						AGAGATTTTAGGTCTTCTCGC	0.388000													36	85					0	0	0.004289	0	0	
DYSF	8291	broad.mit.edu	37	2	71797446	71797446	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:71797446C>T	uc002sie.2	+	28	3389	c.3013C>T	c.(3013-3015)CGG>TGG	p.R1005W	DYSF_uc010feg.2_Missense_Mutation_p.R1036W|DYSF_uc010feh.2_Missense_Mutation_p.R991W|DYSF_uc002sig.3_Missense_Mutation_p.R991W|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1005W|DYSF_uc010fef.2_Missense_Mutation_p.R1022W|DYSF_uc010fei.2_Missense_Mutation_p.R1022W|DYSF_uc010fek.2_Missense_Mutation_p.R1023W|DYSF_uc010fej.2_Missense_Mutation_p.R992W|DYSF_uc010fel.2_Missense_Mutation_p.R992W|DYSF_uc010feo.2_Missense_Mutation_p.R1037W|DYSF_uc010fem.2_Missense_Mutation_p.R1006W|DYSF_uc010fen.2_Missense_Mutation_p.R1023W|DYSF_uc002sif.2_Missense_Mutation_p.R1006W	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1005	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						AGACCTCAACCGGGCTGTCGA	0.592000													15	37					0	0	0.004007	0	0	
DYSF	8291	broad.mit.edu	37	2	71801367	71801367	+	Missense_Mutation	SNP	G	A	A	rs34660230		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:71801367G>A	uc002sie.2	+	30	3590	c.3214G>A	c.(3214-3216)GCC>ACC	p.A1072T	DYSF_uc010feg.2_Missense_Mutation_p.A1103T|DYSF_uc010feh.2_Missense_Mutation_p.A1058T|DYSF_uc002sig.3_Missense_Mutation_p.A1058T|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.A1072T|DYSF_uc010fef.2_Missense_Mutation_p.A1089T|DYSF_uc010fei.2_Missense_Mutation_p.A1089T|DYSF_uc010fek.2_Missense_Mutation_p.A1090T|DYSF_uc010fej.2_Missense_Mutation_p.A1059T|DYSF_uc010fel.2_Missense_Mutation_p.A1059T|DYSF_uc010feo.2_Missense_Mutation_p.A1104T|DYSF_uc010fem.2_Missense_Mutation_p.A1073T|DYSF_uc010fen.2_Missense_Mutation_p.A1090T|DYSF_uc002sif.2_Missense_Mutation_p.A1073T|DYSF_uc010yqy.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1072	Cytoplasmic (Potential).|Arg-rich.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CTGGGAGTACGCCTCTCTTTT	0.662000													47	82					0	0	0.003610	0	0	
C2orf51	200523	broad.mit.edu	37	2	88828731	88828731	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:88828731C>A	uc002stb.1	+	4	424	c.282C>A	c.(280-282)GCC>GCA	p.A94A		NM_152670	NP_689883	Q96LM6	TSC21_HUMAN	chromosome 2 open reading frame 51	94						nucleus				skin(1)	1						AACATGAGGCCACGAGGGAGG	0.582000													37	63					5.71845e-15	6.24743e-15	0.005524	1	0	
EIF2AK3	9451	broad.mit.edu	37	2	88885399	88885399	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:88885399G>A	uc002stc.3	-	9	1812	c.1610C>T	c.(1609-1611)ACG>ATG	p.T537M		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	537	Cytoplasmic (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CACAATAAACGTTGTTGCTAT	0.333000													14	41					0	0	0.002450	0	0	
ASTL	431705	broad.mit.edu	37	2	96789817	96789817	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:96789817T>G	uc010yui.1	-	9	1068	c.1068A>C	c.(1066-1068)GCA>GCC	p.A356A		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	356					proteolysis		metalloendopeptidase activity|zinc ion binding				0						CCGAGGCCTCTGCACTGAGCT	0.672000													16	52					0	0	0.004990	0	0	
CHST10	9486	broad.mit.edu	37	2	101023061	101023061	+	Missense_Mutation	SNP	G	A	A	rs148953500		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:101023061G>A	uc002tam.2	-	3	436	c.77C>T	c.(76-78)ACG>ATG	p.T26M		NM_004854	NP_004845	O43529	CHSTA_HUMAN	HNK-1 sulfotransferase	26	Helical; Signal-anchor for type II membrane protein; (Potential).				carbohydrate biosynthetic process|cell adhesion	Golgi membrane|integral to membrane|membrane fraction				ovary(1)	1						AAAGGTCAACGTGATGAACTT	0.473000													89	201					0	0	0.003610	0	0	
NPAS2	4862	broad.mit.edu	37	2	101606806	101606806	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:101606806C>A	uc002tap.1	+	18	2202	c.1916C>A	c.(1915-1917)GCT>GAT	p.A639D	NPAS2_uc010yvt.1_Missense_Mutation_p.A704D|NPAS2_uc010fit.1_Intron	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	639					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						AGCGCCACAGCTGCGCTCCCG	0.612000													18	42					2.94398e-08	3.07882e-08	0.007413	1	0	
GPR45	11250	broad.mit.edu	37	2	105858503	105858503	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:105858503C>T	uc002tco.1	+	1	304	c.188C>T	c.(187-189)CCG>CTG	p.P63L		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	63	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						TACCAGAGGCCGGCTATGCGC	0.622000													33	72					0	0	0.012213	0	0	
INSIG2	51141	broad.mit.edu	37	2	118864334	118864334	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:118864334A>G	uc002tlk.2	+	4	597	c.391A>G	c.(391-393)ATA>GTA	p.I131V	INSIG2_uc010yye.1_Missense_Mutation_p.I23V|INSIG2_uc002tll.2_Missense_Mutation_p.I23V	NM_016133	NP_057217	Q9Y5U4	INSI2_HUMAN	insulin induced protein 2	131	Helical; (Potential).				ER-nuclear sterol response pathway	SREBP-SCAP-Insig complex				ovary(1)|central_nervous_system(1)	2						CGATAACAACATACAGTTGTC	0.373000													27	70					0	0	0.004656	0	0	
STEAP3	55240	broad.mit.edu	37	2	120005667	120005667	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:120005667G>A	uc002tlp.2	+	4	1062	c.905G>A	c.(904-906)CGC>CAC	p.R302H	STEAP3_uc002tlq.2_Missense_Mutation_p.R312H|STEAP3_uc002tlr.2_Missense_Mutation_p.R302H|STEAP3_uc010fle.2_Missense_Mutation_p.R302H	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	302	Ferric oxidoreductase.|Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						CTACAGCACCGCAAGCAGATC	0.687000													16	27					0	0	0.004990	0	0	
GLI2	2736	broad.mit.edu	37	2	121684992	121684992	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:121684992C>T	uc010flp.2	+	2	234	c.204C>T	c.(202-204)CAC>CAT	p.H68H	GLI2_uc010yyu.1_Silent_p.H68H|GLI2_uc002tmp.1_Silent_p.H68H|GLI2_uc010fln.1_RNA|GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Intron|GLI2_uc002tmu.3_Intron|GLI2_uc002tmv.1_Silent_p.H68H|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Silent_p.H68H	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	68					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				ACATGCGACACCAGGAAGGAA	0.572000													46	103					0	0	0.011902	0	0	
TUBA3E	112714	broad.mit.edu	37	2	130951495	130951495	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:130951495G>T	uc002tqv.2	-	4	1021	c.920C>A	c.(919-921)CCT>CAT	p.P307H		NM_207312	NP_997195	Q6PEY2	TBA3E_HUMAN	tubulin, alpha 3e	307					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1	Colorectal(110;0.1)					GCCATGGCGAGGGTCACACTT	0.582000													36	117					4.00102e-26	4.50773e-26	0.006230	1	0	
RAB3GAP1	22930	broad.mit.edu	37	2	135848572	135848572	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:135848572T>C	uc002tuj.2	+	4	180	c.155T>C	c.(154-156)ATA>ACA	p.I52T	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.I52T|RAB3GAP1_uc010fng.2_5'UTR|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	52						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		ATATAGGGTATATTTACTTCT	0.343000													21	61					0	0	0.003330	0	0	
ZRANB3	84083	broad.mit.edu	37	2	135988401	135988401	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:135988401G>A	uc002tum.2	-	13	1753	c.1636C>T	c.(1636-1638)CGG>TGG	p.R546W	ZRANB3_uc002tuk.2_Missense_Mutation_p.R89W|ZRANB3_uc002tul.2_Missense_Mutation_p.R546W	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	546						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		TTTTCCTCCCGGAATCTCTTT	0.368000													32	64					0	0	0.010818	0	0	
MBD5	55777	broad.mit.edu	37	2	149227818	149227818	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:149227818T>C	uc002twm.3	+	9	3294	c.2306T>C	c.(2305-2307)GTT>GCT	p.V769A	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.V769A|MBD5_uc002twn.1_Missense_Mutation_p.V210A	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	769						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		ACTAACTTTGTTCACAGTAAC	0.473000													35	87					0	0	0.003755	0	0	
SCN2A	6326	broad.mit.edu	37	2	166245809	166245809	+	Silent	SNP	A	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:166245809A>T	uc002udc.2	+	27	5783	c.5493A>T	c.(5491-5493)ATA>ATT	p.I1831I	SCN2A_uc002udd.2_Silent_p.I1831I|SCN2A_uc002ude.2_Silent_p.I1831I	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1831					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CTCTTCTCATAGCAAAACCCA	0.463000													42	107					0	0	0.008740	0	0	
SCN9A	6335	broad.mit.edu	37	2	167055493	167055493	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:167055493G>A	uc010fpl.2	-	27	5964	c.5623C>T	c.(5623-5625)CGG>TGG	p.R1875W	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1886						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTTGTTTCCGTTTTAGTGTG	0.403000													43	106					0	0	0.003610	0	0	
XIRP2	129446	broad.mit.edu	37	2	168106617	168106617	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:168106617A>C	uc002udx.2	+	8	8733	c.8715A>C	c.(8713-8715)CAA>CAC	p.Q2905H	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.Q2730H|XIRP2_uc010fpq.2_Missense_Mutation_p.Q2683H|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.Q251H	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2730					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGGGCATACAAGAGAAACAAG	0.383000													31	78					0	0	0.003271	0	0	
LRP2	4036	broad.mit.edu	37	2	170058203	170058203	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:170058203C>T	uc002ues.2	-	44	8600	c.8387G>A	c.(8386-8388)CGT>CAT	p.R2796H		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2796	LDL-receptor class A 18.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GATAAACTCACGAGGTATGCA	0.433000													12	53					0	0	0.001368	0	0	
ALS2	57679	broad.mit.edu	37	2	202626188	202626188	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:202626188C>T	uc002uyo.2	-	4	885	c.529G>A	c.(529-531)GGT>AGT	p.G177S	ALS2_uc002uyp.3_Missense_Mutation_p.G177S|ALS2_uc002uyq.2_Missense_Mutation_p.G177S|ALS2_uc002uyr.2_Missense_Mutation_p.G177S	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	177	RCC1 3.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						AACTGACAACCGGTACCCCAT	0.532000													30	55					0	0	0.009535	0	0	
PARD3B	117583	broad.mit.edu	37	2	206023539	206023539	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:206023539G>A	uc002var.1	+	11	1735	c.1528G>A	c.(1528-1530)GGG>AGG	p.G510R	PARD3B_uc010fub.1_Missense_Mutation_p.G510R|PARD3B_uc002vao.1_Missense_Mutation_p.G510R|PARD3B_uc002vap.1_Intron|PARD3B_uc002vaq.1_Missense_Mutation_p.G510R	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	510	PDZ 3.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TGCTGGCCTCGGGGTGAGCTT	0.488000													25	67					0	0	0.003330	0	0	
RPE	6120	broad.mit.edu	37	2	210880764	210880764	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:210880764G>A	uc002vdn.2	+	3	275	c.270G>A	c.(268-270)CAG>CAA	p.Q90Q	RPE_uc002vdm.2_Silent_p.Q90Q|RPE_uc002vdo.2_Silent_p.Q22Q|RPE_uc010zjf.1_Silent_p.Q90Q|RPE_uc002vdp.2_Silent_p.Q19Q|RPE_uc010fup.2_Silent_p.Q22Q|RPE_uc002vdq.2_Silent_p.Q22Q|RPE_uc002vdr.2_Silent_p.Q22Q	NM_199229	NP_954699	Q96AT9	RPE_HUMAN	ribulose-5-phosphate-3-epimerase isoform 1	90					pentose-phosphate shunt	cytosol	metal ion binding|protein homodimerization activity|ribulose-phosphate 3-epimerase activity				0				Epithelial(149;0.00241)|Lung(261;0.041)|all cancers(144;0.0429)|LUSC - Lung squamous cell carcinoma(261;0.0431)		GAGCCAATCAGTACACCTTTC	0.438000													16	49					0	0	0.004990	0	0	
SMARCAL1	50485	broad.mit.edu	37	2	217279576	217279576	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:217279576A>G	uc002vgc.3	+	3	479	c.149A>G	c.(148-150)AAG>AGG	p.K50R	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.K50R|SMARCAL1_uc010fvg.2_Missense_Mutation_p.K50R	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	50					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		TTCCAGGCCAAGCAAGGCCCA	0.517000									Schimke_Immuno-Osseous_Dysplasia				30	92					0	0	0.008361	0	0	
RNF25	64320	broad.mit.edu	37	2	219529010	219529010	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:219529010G>A	uc002vit.2	-	10	1138	c.1050C>T	c.(1048-1050)CCC>CCT	p.P350P	RNF25_uc010fvw.2_Silent_p.P238P	NM_022453	NP_071898	Q96BH1	RNF25_HUMAN	ring finger protein 25	350					positive regulation of NF-kappaB transcription factor activity	cytosol|nucleus	NF-kappaB binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;6.99e-07)|all cancers(144;0.000129)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCTCCGTTCGGGCTGTCGCC	0.617000													36	54					0	0	0.003755	0	0	
CRYBA2	1412	broad.mit.edu	37	2	219855029	219855029	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:219855029A>C	uc002vjj.1	-	5	574	c.539T>G	c.(538-540)CTC>CGC	p.L180R	CRYBA2_uc002vjk.1_Missense_Mutation_p.L180R	NM_057094	NP_476435	P53672	CRBA2_HUMAN	crystallin, beta A2	180	Beta/gamma crystallin 'Greek key' 4.						structural constituent of eye lens				0		Renal(207;0.0474)		Epithelial(149;9.77e-07)|all cancers(144;0.000167)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGTGTGCCGAGCTCACCGTA	0.612000													9	39					0	0	0.004482	0	0	
SPEG	10290	broad.mit.edu	37	2	220332024	220332024	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:220332024C>T	uc010fwg.2	+	10	3010	c.3010C>T	c.(3010-3012)CGT>TGT	p.R1004C		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1004	Ig-like 4.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		TTGGCTGTGCCGTGGCCGCCT	0.627000													16	45					0	0	0.004007	0	0	
TM4SF20	79853	broad.mit.edu	37	2	228235653	228235653	+	Missense_Mutation	SNP	G	T	T	rs138005777		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:228235653G>T	uc002vpb.2	-	2	265	c.227C>A	c.(226-228)GCG>GAG	p.A76E		NM_024795	NP_079071	Q53R12	T4S20_HUMAN	transmembrane 4 L six family member 20	76	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0		Renal(207;0.025)|all_lung(227;0.123)|Esophageal squamous(248;0.23)|all_hematologic(139;0.248)		Epithelial(121;3.8e-11)|all cancers(144;2.57e-08)|Lung(261;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0115)		GTTGCAGCACGCTCTTTTTCT	0.428000													91	240					8.45e-40	9.63104e-40	0.003610	1	0	
ITM2C	81618	broad.mit.edu	37	2	231740484	231740484	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:231740484C>T	uc002vqz.2	+	3	531	c.411C>T	c.(409-411)GGC>GGT	p.G137G	ITM2C_uc002vra.2_Silent_p.G90G|ITM2C_uc002vrb.2_Silent_p.G137G|ITM2C_uc002vrc.2_Silent_p.G26G|ITM2C_uc002vrd.2_Silent_p.G26G	NM_030926	NP_112188	Q9NQX7	ITM2C_HUMAN	integral membrane protein 2C isoform 1	137	BRICHOS.				negative regulation of neuron projection development|neuron differentiation	Golgi apparatus|integral to membrane|lysosomal membrane|perinuclear region of cytoplasm	beta-amyloid binding				0		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;8.47e-12)|all cancers(144;3.44e-09)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		CCCAGTTTGGCGGCGGTGACC	0.632000													16	84					0	0	0.004007	0	0	
HJURP	55355	broad.mit.edu	37	2	234749823	234749823	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:234749823G>A	uc002vvg.2	-	8	1669	c.1603C>T	c.(1603-1605)CGC>TGC	p.R535C	HJURP_uc010znd.1_Missense_Mutation_p.R474C|HJURP_uc010zne.1_Missense_Mutation_p.R443C	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	535					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TGCTGCGGGCGAGTTGCGCTG	0.478000													15	47					0	0	0.004007	0	0	
UBE2F	140739	broad.mit.edu	37	2	238881818	238881818	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:238881818G>A	uc002vxk.2	+	2	160	c.69G>A	c.(67-69)GCG>GCA	p.A23A	UBE2F_uc010znn.1_Silent_p.A23A|UBE2F_uc002vxl.2_RNA|UBE2F_uc010zno.1_RNA|UBE2F_uc010znp.1_Silent_p.A23A|SCLY_uc002vxm.3_5'UTR	NM_080678	NP_542409	Q969M7	UBE2F_HUMAN	NEDD8-conjugating enzyme	23	Interaction with UBA3.				protein neddylation		ATP binding|NEDD8 ligase activity|protein binding				0		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		CAGCCACAGCGTCCGACTCGA	0.458000													29	54					0	0	0.008361	0	0	
ILKAP	80895	broad.mit.edu	37	2	239079235	239079235	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:239079235G>A	uc002vxv.2	-	12	1251	c.1121C>T	c.(1120-1122)GCG>GTG	p.A374V	ILKAP_uc010zns.1_Missense_Mutation_p.A306V|ILKAP_uc002vxw.2_Missense_Mutation_p.A254V	NM_030768	NP_110395	Q9H0C8	ILKAP_HUMAN	integrin-linked kinase-associated protein	374	PP2C-like.					cytoplasm|protein serine/threonine phosphatase complex	metal ion binding|protein binding			ovary(3)	3		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_lung(227;0.152)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;5.49e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.93e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.82e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00012)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0163)		CCGCTGCACCGCCTTGTTGGC	0.622000													13	41					0	0	0.002450	0	0	
OR6B2	389090	broad.mit.edu	37	2	240969019	240969019	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:240969019G>A	uc002vyr.2	-	2	874	c.828C>T	c.(826-828)GCC>GCT	p.A276A	OR6B2_uc010zoc.1_Silent_p.A276A	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CAGTGTACACGGCAGAGATGA	0.488000													29	33					0	0	0.006320	0	0	
KIF1A	547	broad.mit.edu	37	2	241726711	241726711	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:241726711C>T	uc002vzy.2	-	5	532	c.386G>A	c.(385-387)CGG>CAG	p.R129Q	KIF1A_uc010fzk.2_Missense_Mutation_p.R129Q|KIF1A_uc002vzz.1_Missense_Mutation_p.R129Q	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	129	Kinesin-motor.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GTCGTTGATCCGAGAGAAGAG	0.652000													12	20					0	0	0.004007	0	0	
ANO7	50636	broad.mit.edu	37	2	242135202	242135202	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:242135202G>T	uc002wax.2	+	4	516	c.413G>T	c.(412-414)AGG>ATG	p.R138M	ANO7_uc002waw.2_Missense_Mutation_p.R137M	NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long	138	Cytoplasmic (Potential).					cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						GACATGCACAGGACCTGGCGG	0.612000													8	21					0.000274275	0.000280416	0.004482	1	0	
PTPRA	5786	broad.mit.edu	37	20	3007405	3007405	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:3007405C>T	uc010zqd.1	+	17	2037	c.1720C>T	c.(1720-1722)CGT>TGT	p.R574C	PTPRA_uc002whj.2_Missense_Mutation_p.R563C|PTPRA_uc002whk.2_Missense_Mutation_p.R554C|PTPRA_uc002whl.2_Missense_Mutation_p.R554C|PTPRA_uc002whm.2_Missense_Mutation_p.R330C|PTPRA_uc002whn.2_Missense_Mutation_p.R554C|PTPRA_uc002who.2_Missense_Mutation_p.R226C	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	563	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GAAGAAGAACCGTGTTTTACA	0.468000													8	39					0	0	0.003080	0	0	
ProSAPiP1	9762	broad.mit.edu	37	20	3147530	3147530	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:3147530C>T	uc002wia.1	-	1	1678	c.280G>A	c.(280-282)GCC>ACC	p.A94T	ProSAPiP1_uc002wib.1_Missense_Mutation_p.A94T	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	94						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						AGGGAGTTGGCGAGACCCTTG	0.682000													4	25					0	0	0.000602	0	0	
ATRN	8455	broad.mit.edu	37	20	3543988	3543988	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:3543988A>G	uc002wim.2	+	10	1854	c.1764A>G	c.(1762-1764)TCA>TCG	p.S588S	ATRN_uc002wil.2_Silent_p.S588S	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1	588	Extracellular (Potential).|Kelch 5.				inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						GCTTCTCTTCAGATTTCATGG	0.418000													66	90					0	0	0.003610	0	0	
CENPB	1059	broad.mit.edu	37	20	3766457	3766457	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:3766457A>G	uc002wjk.2	-	1	881	c.674T>C	c.(673-675)CTG>CCG	p.L225P	CDC25B_uc010zqk.1_5'Flank|CDC25B_uc010zql.1_5'Flank|CDC25B_uc010zqm.1_5'Flank	NM_001810	NP_001801	P07199	CENPB_HUMAN	centromere protein B	225					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|satellite DNA binding				0						CAGGACGCTCAGGCGCTGGGT	0.721000													5	66					0	0	0.001168	0	0	
SSTR4	6754	broad.mit.edu	37	20	23016316	23016316	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:23016316G>T	uc002wsr.2	+	1	260	c.196G>T	c.(196-198)GCC>TCC	p.A66S		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	66	Helical; Name=1; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GGTGGGCAACGCCCTGGTCAT	0.507000													30	71					3.99451e-17	4.40618e-17	0.009535	1	0	
FRG1B	284802	broad.mit.edu	37	20	29625947	29625947	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:29625947T>C	uc010ztl.1	+	2	133	c.101T>C	c.(100-102)ATT>ACT	p.I34T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCAGATGCAATTGGACCAAGA	0.343000													11	115					0	0	0.003163	0	0	
FRG1B	284802	broad.mit.edu	37	20	29628251	29628251	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:29628251A>G	uc010ztl.1	+	3	195	c.163A>G	c.(163-165)AAT>GAT	p.N55D	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.N7D					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTTGGCCTCAAATAGCTGCTT	0.358000													13	217					0	0	0.002299	0	0	
FRG1B	284802	broad.mit.edu	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:29628263A>G	uc010ztl.1	+	3	207	c.175A>G	c.(175-177)ATT>GTT	p.I59V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.I11V					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TAGCTGCTTTATTAGATGCAA	0.363000													10	215					0	0	0.004007	0	0	
NECAB3	63941	broad.mit.edu	37	20	32246607	32246607	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:32246607C>T	uc002wzn.3	-	9	1019	c.913G>A	c.(913-915)GCA>ACA	p.A305T	NECAB3_uc002wzl.2_Missense_Mutation_p.A50T|NECAB3_uc002wzm.3_Missense_Mutation_p.A271T|NECAB3_uc002wzo.3_RNA|NECAB3_uc002wzp.3_Missense_Mutation_p.A198T|NECAB3_uc002wzq.3_Missense_Mutation_p.A253T|NECAB3_uc002wzr.3_RNA|NECAB3_uc010geo.2_Missense_Mutation_p.A271T	NM_031232	NP_112509	Q96P71	NECA3_HUMAN	N-terminal EF-hand calcium binding protein 3	305	ABM.				antibiotic biosynthetic process|protein metabolic process|protein secretion|regulation of amyloid precursor protein biosynthetic process	endoplasmic reticulum membrane|Golgi cis cisterna|nucleus	calcium ion binding|oxidoreductase activity|protein binding			lung(1)	1						CCTTCCTCTGCCACCTGGACC	0.672000													7	23					0	0	0.001984	0	0	
BPI	671	broad.mit.edu	37	20	36939000	36939000	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:36939000G>A	uc002xib.2	+	4	556	c.494G>A	c.(493-495)AGC>AAC	p.S165N		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	165					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				ACCTGCTCCAGCTGCAGCAGC	0.552000													20	33					0	0	0.008871	0	0	
L3MBTL	26013	broad.mit.edu	37	20	42161428	42161428	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:42161428G>T	uc010zwh.1	+	12	1280	c.1234G>T	c.(1234-1236)GGC>TGC	p.G412C	L3MBTL_uc002xkl.2_Missense_Mutation_p.G344C|L3MBTL_uc002xkm.2_Missense_Mutation_p.G344C|L3MBTL_uc010ggl.2_Missense_Mutation_p.G344C|L3MBTL_uc002xkn.1_Missense_Mutation_p.G103C|L3MBTL_uc002xko.2_5'UTR	NM_015478	NP_056293	Q9Y468	LMBL1_HUMAN	l(3)mbt-like isoform I	344	MBT 2.				chromatin modification|hemopoiesis|negative regulation of transcription, DNA-dependent|regulation of megakaryocyte differentiation|regulation of mitosis	chromatin|condensed chromosome|nucleoplasm	identical protein binding|methylated histone residue binding|nucleosomal histone binding|SAM domain binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CCCACCCCTGGGCTTCCAGGT	0.602000													35	95					4.65686e-17	5.12854e-17	0.003755	1	0	
MMP9	4318	broad.mit.edu	37	20	44639956	44639956	+	Splice_Site	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:44639956G>A	uc002xqz.2	+	5	842	c.823_splice	c.e5+1	p.R275_splice		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein						collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	CCCAGCGAGAGTGAGTGAGGG	0.512000													17	42					0	0	0.006122	0	0	
MC3R	4159	broad.mit.edu	37	20	54824580	54824580	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr20:54824580C>T	uc002xxb.2	+	1	793	c.681C>T	c.(679-681)GCC>GCT	p.A227A		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	264	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TGCCACCTGCCGACGGGGTGG	0.602000													27	46					0	0	0.005443	0	0	
KRTAP19-7	337974	broad.mit.edu	37	21	31933432	31933432	+	Silent	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:31933432A>C	uc011adb.1	-	1	177	c.177T>G	c.(175-177)TCT>TCG	p.S59S		NM_181614	NP_853645	Q3SYF9	KR197_HUMAN	keratin associated protein 19-7	59						intermediate filament					0						AGAATCCAGAAGACCAGTATC	0.443000													40	94					0	0	0.006230	0	0	
KRTAP11-1	337880	broad.mit.edu	37	21	32253783	32253783	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:32253783C>T	uc002yov.2	-	1	92	c.61G>A	c.(61-63)GTT>ATT	p.V21I		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	21						keratin filament	structural molecule activity			pancreas(1)	1						GCCACTGGAACAATGCAGCGT	0.547000													24	53					0	0	0.002780	0	0	
HUNK	30811	broad.mit.edu	37	21	33370838	33370838	+	Splice_Site	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:33370838G>A	uc002yph.2	+	11	1847	c.1487_splice	c.e11-1	p.D496_splice		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase						multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						TTGGTGTGCAGATTCCTTTGG	0.537000													20	64					0	0	0.002299	0	0	
SYNJ1	8867	broad.mit.edu	37	21	34012041	34012041	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:34012041G>A	uc002yqh.2	-	30	3754	c.3754C>T	c.(3754-3756)CGG>TGG	p.R1252W	SYNJ1_uc011ads.1_Missense_Mutation_p.R1166W|SYNJ1_uc002yqf.2_Missense_Mutation_p.R1197W|SYNJ1_uc002yqg.2_Missense_Mutation_p.R1166W|SYNJ1_uc002yqi.2_Missense_Mutation_p.R1252W|SYNJ1_uc002yqe.3_5'UTR	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	1213	Pro-rich.						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GCAGATGCCCGCGCGTGGCTC	0.413000													5	36					0	0	0.001168	0	0	
SLC5A3	6526	broad.mit.edu	37	21	35467627	35467627	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:35467627C>T	uc002yto.2	+	2	642	c.130C>T	c.(130-132)CGC>TGC	p.R44C	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	44	Helical; (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						CCTGGCGGGGCGCTCTATGAC	0.488000													35	79					0	0	0.003755	0	0	
DSCAM	1826	broad.mit.edu	37	21	41559141	41559141	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:41559141C>T	uc002yyq.1	-	14	3148	c.2696G>A	c.(2695-2697)CGC>CAC	p.R899H	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	899	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CGTAATTGTGCGTGCTTTGAC	0.438000													8	38					0	0	0.004482	0	0	
UMODL1	89766	broad.mit.edu	37	21	43496223	43496223	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:43496223C>T	uc002zaf.1	+	2	186	c.186C>T	c.(184-186)GGC>GGT	p.G62G	UMODL1_uc002zad.1_5'UTR|UMODL1_uc002zae.1_5'UTR|UMODL1_uc002zag.1_Silent_p.G62G|uc002zah.1_RNA	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	62	Extracellular (Potential).|EMI.					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						TGTCCTGCGGCGGCTGGATCC	0.607000													21	65					0	0	0.012319	0	0	
AIRE	326	broad.mit.edu	37	21	45706903	45706903	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:45706903C>T	uc002zei.2	+	3	477	c.350C>T	c.(349-351)GCC>GTC	p.A117V		NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	117					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		AAGCCCCCGGCCGTCCCCAAG	0.672000									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				8	34					0	0	0.003080	0	0	
COL18A1	80781	broad.mit.edu	37	21	46888235	46888235	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr21:46888235C>T	uc011afs.1	+	2	1452	c.1431C>T	c.(1429-1431)CCC>CCT	p.P477P	COL18A1_uc002zhg.2_Silent_p.P62P|COL18A1_uc002zhi.2_Silent_p.P242P	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	477	TSP N-terminal.				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CGGATGACCCCGACGTCGGGC	0.632000													20	61					0	0	0.007413	0	0	
MICAL3	57553	broad.mit.edu	37	22	18387473	18387473	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:18387473T>C	uc002zng.3	-	3	750	c.397A>G	c.(397-399)ACC>GCC	p.T133A	MICAL3_uc011agl.1_Missense_Mutation_p.T133A|MICAL3_uc002znh.2_Missense_Mutation_p.T133A|MICAL3_uc002znj.1_5'Flank|MICAL3_uc002znk.1_Missense_Mutation_p.T133A|MICAL3_uc002znl.1_5'UTR|MICAL3_uc010grf.2_Missense_Mutation_p.T133A|MICAL3_uc011agm.1_Missense_Mutation_p.T133A	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	133						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		TCATGTATGGTGAATGGCCAG	0.483000													54	135					0	0	0.003610	0	0	
LOC96610	96610	broad.mit.edu	37	22	22664743	22664743	+	RNA	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:22664743G>A	uc011aim.1	+	31		c.2258G>A			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						CAGACTAAAGGCAAACAAGGA	0.498000													4	50					0	0	0.009096	0	0	
CABIN1	23523	broad.mit.edu	37	22	24515545	24515545	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:24515545G>A	uc002zzi.1	+	28	4639	c.4512G>A	c.(4510-4512)CAG>CAA	p.Q1504Q	CABIN1_uc002zzj.1_Silent_p.Q1425Q|CABIN1_uc002zzl.1_Silent_p.Q1504Q	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1504					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						CTGAGGAGCAGCGGCAGTTTC	0.637000													41	56					0	0	0.009718	0	0	
SNRPD3	6634	broad.mit.edu	37	22	24964106	24964106	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:24964106G>T	uc003aam.1	+	3	721	c.281G>T	c.(280-282)GGG>GTG	p.G94V	SNRPD3_uc011aju.1_Missense_Mutation_p.G94V	NM_004175	NP_004166	P62318	SMD3_HUMAN	small nuclear ribonucleoprotein polypeptide D3	94	Arg/Lys-rich (basic).				histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	enzyme binding|histone pre-mRNA DCP binding			ovary(1)	1						CAAGGCTCAGGGGCTGGCCGA	0.448000													11	53					1.58986e-06	1.64759e-06	0.008291	1	0	
ASCC2	84164	broad.mit.edu	37	22	30189452	30189452	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:30189452G>A	uc003agr.2	-	17	1921	c.1816C>T	c.(1816-1818)CCC>TCC	p.P606S	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.P606S|ASCC2_uc011akr.1_Missense_Mutation_p.P530S	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	606					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CTGTGGTAGGGCAGGCTCTCG	0.607000													5	37					0	0	0.001168	0	0	
GAL3ST1	9514	broad.mit.edu	37	22	30951991	30951991	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:30951991G>A	uc003aig.1	-	4	361	c.221C>T	c.(220-222)CCG>CTG	p.P74L	GAL3ST1_uc003aih.1_Missense_Mutation_p.P74L|GAL3ST1_uc003aii.1_Missense_Mutation_p.P74L|GAL3ST1_uc010gvz.1_Missense_Mutation_p.P74L	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	74	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						GTTGCGCCGCGGCTGGCACTC	0.672000													16	50					0	0	0.008871	0	0	
DEPDC5	9681	broad.mit.edu	37	22	32270319	32270319	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:32270319G>A	uc003als.2	+	35	3673	c.3531G>A	c.(3529-3531)GCG>GCA	p.A1177A	DEPDC5_uc011als.1_Silent_p.A1108A|DEPDC5_uc011alu.1_Silent_p.A1208A|DEPDC5_uc011alv.1_RNA|DEPDC5_uc003alt.2_Silent_p.A1199A|DEPDC5_uc003alu.2_Silent_p.A626A|DEPDC5_uc003alv.2_RNA|DEPDC5_uc003alw.2_Silent_p.A475A|DEPDC5_uc011alx.1_Silent_p.A25A|DEPDC5_uc010gwk.2_Silent_p.A203A|DEPDC5_uc011aly.1_Silent_p.A25A	NM_014662	NP_055477	O75140	DEPD5_HUMAN	DEP domain containing 5 isoform 1	1177	DEP.				intracellular signal transduction					ovary(4)|central_nervous_system(3)|pancreas(1)	8						TCATCAGCGCGGAGGTGGTAC	0.592000													3	12					0	0	0.004672	0	0	
CYTH4	27128	broad.mit.edu	37	22	37699399	37699399	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:37699399C>T	uc003arf.2	+	8	768	c.652C>T	c.(652-654)CGC>TGC	p.R218C	CYTH4_uc003are.2_Missense_Mutation_p.R218C|CYTH4_uc011amw.1_Missense_Mutation_p.R161C|CYTH4_uc010gxe.2_Intron	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	218	SEC7.				regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GTCCATGAACCGCGGCATCAA	0.622000													8	20					0	0	0.003080	0	0	
ELFN2	114794	broad.mit.edu	37	22	37769395	37769395	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:37769395C>T	uc003asq.3	-	3	2966	c.2180G>A	c.(2179-2181)CGC>CAC	p.R727H		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	727	Cytoplasmic (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					GAAGGACACGCGCTGGCTCAG	0.647000													10	8					0	0	0.006214	0	0	
LMF2	91289	broad.mit.edu	37	22	50942825	50942825	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:50942825G>T	uc003blp.2	-	12	1693	c.1662C>A	c.(1660-1662)CCC>CCA	p.P554P	LMF2_uc010hba.2_Silent_p.P376P|LMF2_uc003blo.2_Silent_p.P529P	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	554						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GGACGTAGGTGGGCGGCTGCT	0.632000													3	7					0.00024832	0.000254259	0.009096	1	0	
C3orf32	51066	broad.mit.edu	37	3	8669438	8669438	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:8669438C>T	uc003bqu.2	-	8	800	c.554G>A	c.(553-555)CGC>CAC	p.R185H	C3orf32_uc003bqz.2_Missense_Mutation_p.R185H|C3orf32_uc003bqt.2_Missense_Mutation_p.R134H|C3orf32_uc011atg.1_Missense_Mutation_p.R207H|C3orf32_uc003bqv.2_Missense_Mutation_p.R134H|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_Missense_Mutation_p.R185H	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	185	Cys-rich.									skin(1)	1						CTTGGCTTTGCGCTTGGCTCC	0.667000													15	30					0	0	0.004990	0	0	
SLC6A6	6533	broad.mit.edu	37	3	14489254	14489254	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:14489254C>T	uc010heg.2	+	12	820	c.529C>T	c.(529-531)CGC>TGC	p.R177C	SLC6A6_uc003byp.2_Missense_Mutation_p.R177C|SLC6A6_uc010hef.1_RNA|SLC6A6_uc003byq.2_Missense_Mutation_p.R177C|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	177	Extracellular (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						GGACACCATGCGCAAGAACAA	0.557000													6	123					0	0	0.001168	0	0	
MRPS25	64432	broad.mit.edu	37	3	15094033	15094033	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:15094033T>C	uc003bzl.2	-	4	552	c.437A>G	c.(436-438)CAG>CGG	p.Q146R	MRPS25_uc011avl.1_Missense_Mutation_p.R117G|MRPS25_uc011avm.1_Intron	NM_022497	NP_071942	P82663	RT25_HUMAN	mitochondrial ribosomal protein S25	146					translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						GCAGGGCACCTGCCCTTCCAC	0.592000													76	155					0	0	0.003610	0	0	
ZNF385D	79750	broad.mit.edu	37	3	21462764	21462764	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:21462764C>T	uc003cce.2	-	8	1538	c.1130G>A	c.(1129-1131)CGG>CAG	p.R377Q		NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	377						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						AGGAGCTGGCCGCAGGAGTGC	0.453000													8	17					0	0	0.006214	0	0	
NEK10	152110	broad.mit.edu	37	3	27183068	27183068	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:27183068C>T	uc010hfk.2	-	12	1211	c.982G>A	c.(982-984)GCA>ACA	p.A328T	NEK10_uc010hfj.2_Missense_Mutation_p.A271T			Q6ZWH5	NEK10_HUMAN	RecName: Full=Serine/threonine-protein kinase Nek10;          EC=2.7.11.1; AltName: Full=NimA-related protein kinase 10;	1016							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GCAATTCCTGCTGATGCTGTG	0.348000													23	49					0	0	0.002299	0	0	
NEK10	152110	broad.mit.edu	37	3	27346260	27346260	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:27346260G>A	uc003cdt.1	-	13	1280	c.1006C>T	c.(1006-1008)CAG>TAG	p.Q336*		NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	336							ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						TGAAGAAGCTGTTTGATGCCT	0.483000													20	27					0	0	0.008871	0	0	
CMTM7	112616	broad.mit.edu	37	3	32495741	32495741	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:32495741G>A	uc003cey.1	+	5	759	c.523G>A	c.(523-525)GTC>ATC	p.V175I	CMTM7_uc003cez.1_Missense_Mutation_p.V142I	NM_138410	NP_612419	Q96FZ5	CKLF7_HUMAN	CKLF-like MARVEL transmembrane domain containing	175					chemotaxis	extracellular space|integral to membrane	cytokine activity				0						AGATGCAGCCGTCTGATGAGG	0.587000													14	24					0	0	0.003163	0	0	
TRANK1	9881	broad.mit.edu	37	3	36898206	36898206	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:36898206C>T	uc003cgj.2	-	3	1527	c.1225G>A	c.(1225-1227)GAG>AAG	p.E409K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	959					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CTGCCCTTCTCGGCCTCTGTG	0.483000													69	124					0	0	0.003610	0	0	
SCN10A	6336	broad.mit.edu	37	3	38768331	38768331	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:38768331G>T	uc003ciq.2	-	16	2853	c.2853C>A	c.(2851-2853)CTC>CTA	p.L951L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	951					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGGAGAGTGGGAGTTTCACCA	0.602000													4	67					0.00909568	0.00920316	0.009096	1	0	
LIMD1	8994	broad.mit.edu	37	3	45637565	45637565	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:45637565G>A	uc003coq.2	+	1	1243	c.1194G>A	c.(1192-1194)GAG>GAA	p.E398E		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	398					cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		CCCTGCCTGAGTTATCTTGTA	0.622000													9	22					0	0	0.008291	0	0	
CCR3	1232	broad.mit.edu	37	3	46307111	46307111	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:46307111C>A	uc003cpg.1	+	4	1005	c.462C>A	c.(460-462)AGC>AGA	p.S154R	CCR3_uc003cpi.1_Missense_Mutation_p.S154R|CCR3_uc003cpj.1_Missense_Mutation_p.S154R|CCR3_uc003cpk.1_Missense_Mutation_p.S175R|CCR3_uc010hjb.1_Missense_Mutation_p.S172R|CCR3_uc003cpl.1_Missense_Mutation_p.S187R	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	154	Helical; Name=4; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		TCATCACCAGCATCGTCACCT	0.488000													37	64					9.17885e-22	1.03074e-21	0.003271	1	0	
KLHL18	23276	broad.mit.edu	37	3	47378106	47378106	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:47378106G>T	uc003crd.2	+	7	1106	c.980G>T	c.(979-981)AGC>ATC	p.S327I	KLHL18_uc003crc.2_Missense_Mutation_p.S327I|KLHL18_uc011bav.1_Missense_Mutation_p.S215I|KLHL18_uc010hjq.1_Missense_Mutation_p.S183I	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	327	Kelch 1.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		ACAGCCCGCAGCCGCGTTGGC	0.567000													17	34					1.33834e-09	1.40607e-09	0.007413	1	0	
KLHL18	23276	broad.mit.edu	37	3	47378108	47378108	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:47378108C>T	uc003crd.2	+	7	1108	c.982C>T	c.(982-984)CGC>TGC	p.R328C	KLHL18_uc003crc.2_Missense_Mutation_p.R328C|KLHL18_uc011bav.1_Missense_Mutation_p.R216C|KLHL18_uc010hjq.1_Missense_Mutation_p.R184C	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	328	Kelch 1.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		AGCCCGCAGCCGCGTTGGCGT	0.567000													18	32					0	0	0.006122	0	0	
LAMB2	3913	broad.mit.edu	37	3	49166186	49166186	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:49166186C>T	uc003cwe.2	-	14	2097	c.1798G>A	c.(1798-1800)GTG>ATG	p.V600M	LAMB2_uc003cwf.1_Missense_Mutation_p.V600M	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	600	Laminin IV type B.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGTAGCCGCACGAAGCCTGAG	0.617000													22	51					0	0	0.005443	0	0	
RNF123	63891	broad.mit.edu	37	3	49743092	49743092	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:49743092G>A	uc003cxh.2	+	24	2370	c.2284G>A	c.(2284-2286)GTA>ATA	p.V762I	RNF123_uc010hky.1_Missense_Mutation_p.V424I|RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	762						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		CAACCTCAGCGTACACCAGCA	0.622000													3	23					0	0	0.004672	0	0	
MON1A	84315	broad.mit.edu	37	3	49949043	49949043	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:49949043C>A	uc003cxz.2	-	3	946	c.820G>T	c.(820-822)GCA>TCA	p.A274S	MON1A_uc003cya.2_Intron|MON1A_uc003cyb.2_Intron	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	177							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CTGGAAAGTGCCTCCTCAGAC	0.592000													26	48					2.44723e-14	2.66511e-14	0.004656	1	0	
MON1A	84315	broad.mit.edu	37	3	49949063	49949063	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:49949063G>A	uc003cxz.2	-	3	926	c.800C>T	c.(799-801)TCC>TTC	p.S267F	MON1A_uc003cya.2_Intron|MON1A_uc003cyb.2_Intron	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	170							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CCCATAGCGGGAGTACACAGG	0.597000													23	44					0	0	0.003330	0	0	
GRM2	2912	broad.mit.edu	37	3	51749144	51749144	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:51749144G>A	uc010hlv.2	+	4	1594	c.1355G>A	c.(1354-1356)CGC>CAC	p.R452H	GRM2_uc003dbo.3_5'UTR|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	452	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	GGTATTGGCCGCTACAACATC	0.577000													15	30					0	0	0.003163	0	0	
WNT5A	7474	broad.mit.edu	37	3	55513591	55513591	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:55513591A>G	uc003dhn.2	-	3	460	c.142T>C	c.(142-144)TCG>CCG	p.S48P	WNT5A_uc003dhm.2_Missense_Mutation_p.S33P|WNT5A_uc010hmw.2_Missense_Mutation_p.S33P|WNT5A_uc010hmx.2_Intron	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	48					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		ATACCTAGCGACCTGCAAGGG	0.468000													19	137					0	0	0.010504	0	0	
PDZRN3	23024	broad.mit.edu	37	3	73450150	73450150	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:73450150C>T	uc003dpl.1	-	5	1273	c.1177G>A	c.(1177-1179)GCC>ACC	p.A393T	PDZRN3_uc011bgh.1_Missense_Mutation_p.A50T|PDZRN3_uc010hoe.1_Missense_Mutation_p.A91T|PDZRN3_uc011bgf.1_Missense_Mutation_p.A110T|PDZRN3_uc011bgg.1_Missense_Mutation_p.A113T	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	393							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TATTCATGGGCTGAGGGATGC	0.478000													38	75					0	0	0.006999	0	0	
FILIP1L	11259	broad.mit.edu	37	3	99569681	99569681	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:99569681C>A	uc003dtm.2	-	5	1302	c.839G>T	c.(838-840)AGA>ATA	p.R280I	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.R280I|FILIP1L_uc010hpf.2_Intron|FILIP1L_uc010hpg.2_Missense_Mutation_p.R40I|FILIP1L_uc003dtn.2_Missense_Mutation_p.R40I|FILIP1L_uc003dtp.1_Missense_Mutation_p.R40I	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	280	Potential.					cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						CTCCTGAACTCTGGCTTCAGC	0.483000													70	197					3.07281e-33	3.49068e-33	0.003610	1	0	
CEP97	79598	broad.mit.edu	37	3	101445494	101445494	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:101445494T>C	uc003dvk.1	+	2	127	c.100T>C	c.(100-102)TGT>CGT	p.C34R	CEP97_uc010hpm.1_Missense_Mutation_p.C34R|CEP97_uc011bhf.1_Missense_Mutation_p.C34R|CEP97_uc003dvl.1_5'Flank	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	34						centrosome|nucleus	protein binding			ovary(2)	2						AAATTTACCCTGTGAAGCTGA	0.328000													17	32					0	0	0.006122	0	0	
SEMA5B	54437	broad.mit.edu	37	3	122646705	122646705	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:122646705G>T	uc003efz.1	-	8	1086	c.782C>A	c.(781-783)GCC>GAC	p.A261D	SEMA5B_uc011bju.1_Missense_Mutation_p.A203D|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Missense_Mutation_p.A261D|SEMA5B_uc010hro.1_Missense_Mutation_p.A203D|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	261	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCGGTAGATGGCAGGGTCCCG	0.622000													21	51					1.01871e-10	1.08021e-10	0.008871	1	0	
ROPN1B	152015	broad.mit.edu	37	3	125701213	125701213	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:125701213C>T	uc003eih.2	+	5	725	c.497C>T	c.(496-498)ACG>ATG	p.T166M	ROPN1B_uc010hsb.2_Missense_Mutation_p.T166M|ROPN1B_uc010hsc.2_Missense_Mutation_p.T74M	NM_001012337	NP_001012337	Q9BZX4	ROP1B_HUMAN	ropporin, rhophilin associated protein 1B	166					acrosome reaction|cell-cell adhesion|cytokinesis|fusion of sperm to egg plasma membrane|Rho protein signal transduction|sperm motility|spermatogenesis	cytoplasm|flagellum	cAMP-dependent protein kinase regulator activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling complex scaffold activity				0				GBM - Glioblastoma multiforme(114;0.151)		TTTCTCTACACGTATATTGCC	0.438000													26	51					0	0	0.003954	0	0	
ALDH1L1	10840	broad.mit.edu	37	3	125844513	125844513	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:125844513C>T	uc003eim.1	-	15	1936	c.1746G>A	c.(1744-1746)TGG>TGA	p.W582*	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Nonsense_Mutation_p.W481*	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	582	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CAGCTGTCTTCCAGGACAGCA	0.587000													14	46					0	0	0.003163	0	0	
PLXNA1	5361	broad.mit.edu	37	3	126707619	126707619	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:126707619C>T	uc003ejg.2	+	1	118	c.114C>T	c.(112-114)GGC>GGT	p.G38G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	61	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AGCAGACAGGCGAGGTGTATG	0.652000													8	39					0	0	0.004482	0	0	
SERPINI1	5274	broad.mit.edu	37	3	167507093	167507093	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:167507093G>C	uc003ffa.3	+	2	375	c.177G>C	c.(175-177)ATG>ATC	p.M59I	SERPINI1_uc003ffb.3_Missense_Mutation_p.M59I	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	59					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						CAATGGGAATGATGGAACTTG	0.413000													23	87					0	0	0.002299	0	0	
PSMD2	5708	broad.mit.edu	37	3	184025728	184025728	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:184025728C>T	uc003fnn.1	+	19	2382	c.2349C>T	c.(2347-2349)AGC>AGT	p.S783S	PSMD2_uc011brj.1_Silent_p.S624S|PSMD2_uc011brk.1_Silent_p.S653S	NM_002808	NP_002799	Q13200	PSMD2_HUMAN	proteasome 26S non-ATPase subunit 2	783					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome regulatory particle	enzyme regulator activity|protein binding				0	all_cancers(143;1.54e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)		Bortezomib(DB00188)	CCTACCACAGCGACCGGCAGC	0.522000													29	45					0	0	0.006320	0	0	
CHRD	8646	broad.mit.edu	37	3	184101309	184101309	+	Splice_Site	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:184101309A>G	uc003fov.2	+	12	1567	c.1321_splice	c.e12-2	p.V441_splice	CHRD_uc003fow.2_Splice_Site_p.V71_splice|CHRD_uc003fox.2_Splice_Site_p.V441_splice|CHRD_uc003foy.2_Splice_Site_p.V71_splice|CHRD_uc010hyc.2_Intron|CHRD_uc011brr.1_Splice_Site_p.V71_splice	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor						BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			CCTGCCCATCAGGTGCAAGTG	0.637000													8	30					0	0	0.004482	0	0	
PDE6B	5158	broad.mit.edu	37	4	656381	656381	+	Silent	SNP	C	T	T	rs140849790		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:656381C>T	uc003gap.2	+	14	1859	c.1806C>T	c.(1804-1806)CGC>CGT	p.R602R	PDE6B_uc003gao.3_Silent_p.R602R|PDE6B_uc011buy.1_Silent_p.R323R|PDE6B_uc011buz.1_Silent_p.R34R	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	602					cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						TCGACCACCGCGGCACCAACA	0.577000													9	29					0	0	0.004482	0	0	
GAK	2580	broad.mit.edu	37	4	860221	860221	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:860221C>T	uc003gbm.3	-	22	3173	c.2974G>A	c.(2974-2976)GTC>ATC	p.V992I	GAK_uc003gbn.3_Missense_Mutation_p.V913I|GAK_uc010ibi.2_Missense_Mutation_p.V173I|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.V845I	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	992					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		GATGGTGGGACGGTCACAGAG	0.617000													8	19					0	0	0.003080	0	0	
SPON2	10417	broad.mit.edu	37	4	1165659	1165659	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:1165659C>T	uc003gcn.3	-	1	228	c.201G>A	c.(199-201)GCG>GCA	p.A67A	SPON2_uc003gco.3_Silent_p.A67A|SPON2_uc010ibr.2_Silent_p.A67A|SPON2_uc003gcm.1_5'Flank	NM_012445	NP_036577	Q9BUD6	SPON2_HUMAN	spondin 2, extracellular matrix protein	67	Spondin.				axon guidance|cell adhesion|innate immune response	proteinaceous extracellular matrix	metal ion binding			central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00805)	UCEC - Uterine corpus endometrioid carcinoma (64;0.139)|Colorectal(103;0.19)		AAGACCACTGCGCAGGGGGGC	0.687000													21	28					0	0	0.010504	0	0	
FGFR3	2261	broad.mit.edu	37	4	1803616	1803616	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:1803616C>T	uc003gdr.3	+	7	1050	c.794C>T	c.(793-795)GCG>GTG	p.A265V	FGFR3_uc003gdu.2_Missense_Mutation_p.A265V|FGFR3_uc003gds.3_Missense_Mutation_p.A265V|FGFR3_uc003gdq.3_Missense_Mutation_p.A265V|FGFR3_uc010icb.1_Missense_Mutation_p.A107V|FGFR3_uc003gdt.1_Missense_Mutation_p.A107V	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	265	Ig-like C2-type 3.|Extracellular (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.A265T(2)		urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	AACCAGACGGCGGTGCTGGGC	0.607000		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				9	16					0	0	0.004482	0	0	
WHSC1	7468	broad.mit.edu	37	4	1961359	1961359	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:1961359C>T	uc003gdz.3	+	17	3323	c.3147C>T	c.(3145-3147)GGC>GGT	p.G1049G	WHSC1_uc003geb.3_Silent_p.G1049G|WHSC1_uc003gec.3_Silent_p.G1049G|WHSC1_uc003ged.3_Silent_p.G1049G|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Silent_p.G268G|WHSC1_uc011bvh.1_Silent_p.G110G|WHSC1_uc010icf.2_Silent_p.G397G	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	1049	AWS.				anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		GTCCCGCGGGCGAGTTCTGCC	0.567000			T	IGH@	MM								26	41					0	0	0.003330	0	0	
JAKMIP1	152789	broad.mit.edu	37	4	6107634	6107634	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:6107634G>A	uc003giu.3	-	3	466	c.190C>T	c.(190-192)CGG>TGG	p.R64W	JAKMIP1_uc010idb.1_Missense_Mutation_p.R64W|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Missense_Mutation_p.R64W|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Missense_Mutation_p.R64W|JAKMIP1_uc010ide.2_Missense_Mutation_p.R64W	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	64	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						GCCGTGTGCCGTCGCTGCTCC	0.622000													10	31					0	0	0.008291	0	0	
WFS1	7466	broad.mit.edu	37	4	6296826	6296826	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:6296826C>T	uc003giy.2	+	7	937	c.771C>T	c.(769-771)GGC>GGT	p.G257G	WFS1_uc003gix.2_Silent_p.G257G|WFS1_uc003giz.2_Silent_p.G75G	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	257					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		ACGCCAAGGGCGTCATCCCCA	0.577000													29	54					0	0	0.005443	0	0	
WFS1	7466	broad.mit.edu	37	4	6302499	6302499	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:6302499C>T	uc003giy.2	+	8	1143	c.977C>T	c.(976-978)GCG>GTG	p.A326V	WFS1_uc003gix.2_Missense_Mutation_p.A326V|WFS1_uc003giz.2_Missense_Mutation_p.A144V	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	326	Helical; (Potential).		A -> V.		endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		CACATCAACGCGCTCATCTTC	0.542000													31	65					0	0	0.012213	0	0	
CCKAR	886	broad.mit.edu	37	4	26483548	26483548	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:26483548G>A	uc003gse.1	-	5	1152	c.999C>T	c.(997-999)AAC>AAT	p.N333N		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	333	Helical; Name=6; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	CCCGCCAGGCGTTGGCGCTGA	0.617000													30	61					0	0	0.007291	0	0	
TLR10	81793	broad.mit.edu	37	4	38776168	38776168	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:38776168C>T	uc003gti.2	-	2	1423	c.1044G>A	c.(1042-1044)ACG>ACA	p.T348T	TLR10_uc003gtj.2_Silent_p.T348T|TLR10_uc003gtk.2_Silent_p.T348T	NM_030956	NP_112218	Q9BXR5	TLR10_HUMAN	toll-like receptor 10 precursor	348	LRR 8.|Extracellular (Potential).				inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway	integral to membrane|plasma membrane	transmembrane receptor activity			lung(1)|breast(1)	2						ATTGGAATTTCGTAGGATAAT	0.328000													22	64					0	0	0.010504	0	0	
KDR	3791	broad.mit.edu	37	4	55968171	55968171	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:55968171C>T	uc003has.2	-	15	2461	c.2159G>A	c.(2158-2160)CGG>CAG	p.R720Q	KDR_uc003hat.1_Missense_Mutation_p.R720Q	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	720	Ig-like C2-type 7.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	AGTGAGGTTCCGGTTCCCATC	0.438000			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			33	92					0	0	0.004878	0	0	
UGT2B28	54490	broad.mit.edu	37	4	70148363	70148363	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:70148363G>A	uc003hej.2	+	2	855	c.853G>A	c.(853-855)GCC>ACC	p.A285T	UGT2B28_uc010ihr.2_Missense_Mutation_p.A285T	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	285					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	CTGCAAACCTGCCAAACCCCT	0.388000													42	183					0	0	0.003610	0	0	
RASSF6	166824	broad.mit.edu	37	4	74442417	74442417	+	Silent	SNP	C	T	T	rs147932445	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:74442417C>T	uc003hhd.1	-	9	972	c.849G>A	c.(847-849)CCG>CCA	p.P283P	RASSF6_uc003hhc.1_Silent_p.P251P|RASSF6_uc010iik.1_Silent_p.P217P|RASSF6_uc010iil.1_Silent_p.P239P	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	283	Ras-associating.				apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			TCTGCAGTAGCGGAATGTCTG	0.403000													37	152					0	0	0.006999	0	0	
PDLIM5	10611	broad.mit.edu	37	4	95496845	95496845	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:95496845G>A	uc003hti.2	+	5	521	c.370G>A	c.(370-372)GCC>ACC	p.A124T	PDLIM5_uc003htf.2_Intron|PDLIM5_uc003htg.2_Intron|PDLIM5_uc011cdx.1_Intron|PDLIM5_uc003hth.2_Intron|PDLIM5_uc003htj.2_Intron|PDLIM5_uc003htk.2_Intron|PDLIM5_uc011cdy.1_Missense_Mutation_p.A2T	NM_006457	NP_006448	Q96HC4	PDLI5_HUMAN	PDZ and LIM domain 5 isoform a	124					regulation of dendritic spine morphogenesis|regulation of synaptogenesis	actin cytoskeleton|cell junction|cytosol|postsynaptic density|postsynaptic membrane|synaptosome	actin binding|actinin binding|protein kinase C binding|zinc ion binding			ovary(1)|skin(1)	2		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.84e-09)		AAACAACATGGCCTACAATAA	0.463000													56	160					0	0	0.003610	0	0	
MANBA	4126	broad.mit.edu	37	4	103553381	103553381	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:103553381C>T	uc003hwg.2	-	17	2573	c.2473G>A	c.(2473-2475)GCT>ACT	p.A825T	MANBA_uc011ces.1_Missense_Mutation_p.A768T	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	825					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		ACAAAGGGAGCGACAGCTGAG	0.413000													21	84					0	0	0.002780	0	0	
TET2	54790	broad.mit.edu	37	4	106157193	106157193	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:106157193G>T	uc003hxk.2	+	3	2480	c.2094G>T	c.(2092-2094)GTG>GTT	p.V698V	TET2_uc011cez.1_Silent_p.V719V|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Silent_p.V698V|TET2_uc003hxi.1_Silent_p.V698V	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	698	Gln-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		TGTCCCCAGTGTTGAAACAGC	0.418000			Mis N|F		MDS								31	105					5.77227e-19	6.39807e-19	0.008361	1	0	
FAT4	79633	broad.mit.edu	37	4	126336826	126336826	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:126336826C>T	uc003ifj.3	+	5	6708	c.6708C>T	c.(6706-6708)AGC>AGT	p.S2236S	FAT4_uc011cgp.1_Silent_p.S534S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2236	Cadherin 21.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATCGAGGCAGCACACCCAGAA	0.448000													68	42					0	0	0.003610	0	0	
INTU	27152	broad.mit.edu	37	4	128632225	128632225	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:128632225C>T	uc003ifk.1	+	14	2597	c.2527C>T	c.(2527-2529)CGT>TGT	p.R843C	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	843										ovary(1)	1						TCTTTCCATTCGTGCAGTTTT	0.413000													25	18					0	0	0.005443	0	0	
ZNF827	152485	broad.mit.edu	37	4	146824292	146824292	+	Missense_Mutation	SNP	G	A	A	rs149206051		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:146824292G>A	uc003ikn.2	-	2	167	c.119C>T	c.(118-120)CCG>CTG	p.P40L	ZNF827_uc003ikm.2_Missense_Mutation_p.P40L|ZNF827_uc010iox.2_Intron	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	40					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TGCTTCTGACGGAGTCTCTGA	0.532000													23	85					0	0	0.003330	0	0	
FBXW7	55294	broad.mit.edu	37	4	153249385	153249385	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:153249385G>A	uc003ims.2	-	9	1542	c.1393C>T	c.(1393-1395)CGT>TGT	p.R465C	FBXW7_uc011cii.1_Missense_Mutation_p.R465C|FBXW7_uc003imt.2_Missense_Mutation_p.R465C|FBXW7_uc011cih.1_Missense_Mutation_p.R289C|FBXW7_uc003imq.2_Missense_Mutation_p.R385C|FBXW7_uc003imr.2_Missense_Mutation_p.R347C	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	465	WD 3.		R -> H (in a colorectal cancer sample; somatic mutation).|R -> C (in a acute lymphoblastic leukemia cell line).		interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.R465C(52)|p.R465H(36)|p.R465L(2)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TGCATACAACGCACAGTGGAA	0.413000			Mis|N|D|F		colorectal|endometrial|T-ALL								56	149					0	0	0.003610	0	0	
FHDC1	85462	broad.mit.edu	37	4	153881743	153881743	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:153881743C>T	uc003inf.2	+	4	765	c.690C>T	c.(688-690)GGC>GGT	p.G230G		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	230	FH2.				actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					CGTTTAGTGGCGACGTGTCGA	0.373000													45	23					0	0	0.003610	0	0	
GK3P	2713	broad.mit.edu	37	4	166199704	166199704	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:166199704G>A	uc003ird.3	-	1	1472	c.1094C>T	c.(1093-1095)TCG>TTG	p.S365L	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						ATATAACCCCGAAAATGCTGG	0.403000													54	46					0	0	0.003610	0	0	
HAND2	9464	broad.mit.edu	37	4	174450000	174450000	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:174450000G>A	uc003ith.1	-	1	1379	c.441C>T	c.(439-441)TAC>TAT	p.Y147Y	NBLA00301_uc011ckd.1_5'Flank|NBLA00301_uc003itl.3_5'Flank|NBLA00301_uc003itj.2_5'Flank|NBLA00301_uc010irf.2_5'Flank|NBLA00301_uc010irg.2_5'Flank|NBLA00301_uc010irh.2_5'Flank|NBLA00301_uc010iri.2_5'Flank|NBLA00301_uc010irj.2_5'Flank|NBLA00301_uc010irk.2_5'Flank|NBLA00301_uc010irl.2_5'Flank|NBLA00301_uc010irm.2_5'Flank|NBLA00301_uc010irn.2_5'Flank|NBLA00301_uc003itk.2_5'Flank|HAND2_uc003itg.1_Missense_Mutation_p.H113Y|HAND2_uc010ire.1_Silent_p.Y147Y	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	147	Helix-loop-helix motif.				adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity			skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GGTAGGCGATGTAGCTGGTGG	0.592000													42	25					0	0	0.009718	0	0	
C4orf41	60684	broad.mit.edu	37	4	184589196	184589196	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:184589196C>T	uc003ivx.2	+	5	662	c.486C>T	c.(484-486)TGC>TGT	p.C162C	C4orf41_uc003ivw.2_Silent_p.C162C|C4orf41_uc010isc.2_Intron	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	162											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		CAGCTTTATGCAATGCATGTG	0.383000													27	84					0	0	0.009535	0	0	
SLC12A7	10723	broad.mit.edu	37	5	1075484	1075484	+	Splice_Site	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:1075484A>G	uc003jbu.2	-	15	2033	c.1967_splice	c.e15+1	p.G656_splice		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride						potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GACAGCGCTTACCCGCGGTAC	0.657000													10	24					0	0	0.001368	0	0	
ADAMTS16	170690	broad.mit.edu	37	5	5232558	5232558	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:5232558T>G	uc003jdl.2	+	12	1917	c.1779T>G	c.(1777-1779)TCT>TCG	p.S593S	ADAMTS16_uc003jdk.1_Silent_p.S593S|ADAMTS16_uc010itk.1_5'Flank	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	593	TSP type-1 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CGGACTGGTCTTCTTGGTCCC	0.537000													36	68					0	0	0.003271	0	0	
ADCY2	108	broad.mit.edu	37	5	7520977	7520977	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:7520977G>A	uc003jdz.1	+	3	602	c.535G>A	c.(535-537)GCA>ACA	p.A179T		NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	179	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						CTGCCTGTCTGCAACACCGGG	0.607000													22	61					0	0	0.002299	0	0	
MTRR	4552	broad.mit.edu	37	5	7873500	7873500	+	Silent	SNP	C	T	T	rs138612190	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:7873500C>T	uc003jed.2	+	3	255	c.225C>T	c.(223-225)ACC>ACT	p.T75T	MTRR_uc010itn.1_Intron|MTRR_uc003jee.3_Silent_p.T48T|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_Intron|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	75	Flavodoxin-like.				methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	ACCTAAAAACCGAAACAGCTC	0.448000													43	115					0	0	0.007835	0	0	
MARCH11	441061	broad.mit.edu	37	5	16067654	16067654	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:16067654G>A	uc003jfo.2	-	4	1348	c.1135C>T	c.(1135-1137)CGG>TGG	p.R379W	MARCH11_uc010itw.1_Missense_Mutation_p.R135W	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	379						cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						GGCCTCATCCGATTGAACAGG	0.478000													57	110					0	0	0.003610	0	0	
CDH10	1008	broad.mit.edu	37	5	24491847	24491847	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:24491847C>A	uc003jgr.1	-	11	2046	c.1714G>T	c.(1714-1716)GAT>TAT	p.D572Y	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	572	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATTGGGTAATCATTGTCTGAT	0.433000										HNSCC(23;0.051)			17	34					1.15088e-07	1.20175e-07	0.004007	1	0	
PDZD2	23037	broad.mit.edu	37	5	32089364	32089364	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:32089364T>C	uc003jhl.2	+	20	6198	c.5810T>C	c.(5809-5811)GTA>GCA	p.V1937A	PDZD2_uc003jhm.2_Missense_Mutation_p.V1937A	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1937					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CGGCTCCATGTAGCCGACCAC	0.597000													24	53					0	0	0.002780	0	0	
MAP3K1	4214	broad.mit.edu	37	5	56177584	56177584	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:56177584C>T	uc003jqw.3	+	14	3058	c.2557C>T	c.(2557-2559)CGT>TGT	p.R853C		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	853					cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		CACCAGGATGCGTCGCCGTTT	0.468000													28	69					0	0	0.007291	0	0	
MAP1B	4131	broad.mit.edu	37	5	71495988	71495988	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:71495988C>A	uc003kbw.3	+	5	7047	c.6806C>A	c.(6805-6807)GCA>GAA	p.A2269E	MAP1B_uc010iyw.1_Missense_Mutation_p.A2286E|MAP1B_uc010iyx.1_Missense_Mutation_p.A2143E|MAP1B_uc010iyy.1_Missense_Mutation_p.A2143E	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2269						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		AAGCCCTTGGCAGCTTCACCA	0.453000													42	114					1.02591e-13	1.11194e-13	0.010771	1	0	
THBS4	7060	broad.mit.edu	37	5	79355673	79355673	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:79355673G>T	uc003kgh.2	+	8	1255	c.932G>T	c.(931-933)GGG>GTG	p.G311V		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	311	EGF-like 1.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		TTCCAGTGTGGGCCCTGCCCC	0.562000													39	108					9.88483e-10	1.04011e-09	0.007835	1	0	
RASGRF2	5924	broad.mit.edu	37	5	80363869	80363869	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:80363869T>C	uc003kha.1	+	3	414	c.414T>C	c.(412-414)ATT>ATC	p.I138I	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_5'Flank	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	138					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		ACATTTTGATTGAGAGGGAAG	0.328000													31	70					0	0	0.012213	0	0	
RASGRF2	5924	broad.mit.edu	37	5	80382675	80382675	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:80382675C>T	uc003kha.1	+	9	1293	c.1293C>T	c.(1291-1293)AGC>AGT	p.S431S	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Silent_p.S259S	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	431					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		ATGAAGTCAGCGACACTGAAA	0.468000													14	31					0	0	0.003163	0	0	
KCNN2	3781	broad.mit.edu	37	5	113798824	113798824	+	Silent	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:113798824T>G	uc003kqo.2	+	4	1537	c.1080T>G	c.(1078-1080)GGT>GGG	p.G360G	KCNN2_uc003kqp.2_Silent_p.G12G|KCNN2_uc010jcg.2_RNA|uc003kqq.1_Intron	NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	360						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		TCTCCATTGGTTATGGTGACA	0.378000													45	122					0	0	0.011902	0	0	
CTNNA1	1495	broad.mit.edu	37	5	138160446	138160446	+	Silent	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:138160446T>A	uc003ldh.2	+	6	911	c.816T>A	c.(814-816)GGT>GGA	p.G272G	CTNNA1_uc011cyx.1_Silent_p.G169G|CTNNA1_uc011cyy.1_Silent_p.G149G|CTNNA1_uc003ldi.2_Intron|CTNNA1_uc003ldj.2_Silent_p.G272G	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	272					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AGCACCAGGGTGGAGGAGGAG	0.522000													25	88					0	0	0.007291	0	0	
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139918632	139918632	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:139918632T>C	uc003lfs.1	+	33	7657	c.7533T>C	c.(7531-7533)GTT>GTC	p.V2511V	ANKHD1_uc003lfr.2_Silent_p.V2511V|ANKHD1-EIF4EBP3_uc011czh.1_Silent_p.V1267V|ANKHD1_uc003lfw.2_Silent_p.V1166V|ANKHD1_uc010jfl.2_Silent_p.V887V|ANKHD1-EIF4EBP3_uc003lfx.1_Silent_p.V656V	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2511						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATAAAAGTTATCCAAAATT	0.403000													18	39					0	0	0.007413	0	0	
PCDHA4	56144	broad.mit.edu	37	5	140188676	140188676	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:140188676G>A	uc003lhi.2	+	1	2005	c.1904G>A	c.(1903-1905)CGT>CAT	p.R635H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.R635H|PCDHA4_uc011daa.1_Missense_Mutation_p.R635H	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	635	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCACAACGCGTGCCCTGGAC	0.682000													39	57					0	0	0.009718	0	0	
PCDHA5	56143	broad.mit.edu	37	5	140202836	140202836	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:140202836G>A	uc003lhl.2	+	1	1476	c.1476G>A	c.(1474-1476)TCG>TCA	p.S492S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.S492S|PCDHA5_uc003lhj.1_Silent_p.S492S	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	492	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCTACTCGCTGGTGGAGC	0.667000													21	51					0	0	0.009535	0	0	
PCDHA9	9752	broad.mit.edu	37	5	140229691	140229691	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:140229691G>A	uc003lhu.2	+	1	2335	c.1611G>A	c.(1609-1611)GCG>GCA	p.A537A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.A537A	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	537	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGAGCGCGCGCGACGCGG	0.662000													44	88					0	0	0.003610	0	0	
PCDHB6	56130	broad.mit.edu	37	5	140530024	140530024	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:140530024C>T	uc003lir.2	+	1	186	c.186C>T	c.(184-186)GGC>GGT	p.G62G	PCDHB6_uc011dah.1_Intron	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	62	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCGCGGGGCGCTCGGGTTG	0.517000													41	73					0	0	0.011902	0	0	
PCDHGA4	56111	broad.mit.edu	37	5	140734826	140734826	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:140734826T>G	uc003ljq.1	+	1	59	c.59T>G	c.(58-60)CTG>CGG	p.L20R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.L20R	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	20					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCTTCTCCTGGGGGTTCTG	0.622000													11	47					0	0	0.001368	0	0	
PCDHGB6	56100	broad.mit.edu	37	5	140789059	140789059	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:140789059G>A	uc003lkj.1	+	1	1290	c.1290G>A	c.(1288-1290)CCG>CCA	p.P430P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.P430P	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	430	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGGCAAGCCGCCTCTTTCTT	0.532000													20	38					0	0	0.007413	0	0	
NDST1	3340	broad.mit.edu	37	5	149901098	149901098	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:149901098G>A	uc003lsk.3	+	2	784	c.282G>A	c.(280-282)TCG>TCA	p.S94S	NDST1_uc011dcj.1_Silent_p.S94S|NDST1_uc003lsl.2_Silent_p.S94S	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	94	Heparan sulfate N-deacetylase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCTCTACTCGCAACTGGGCC	0.637000													33	65					0	0	0.002836	0	0	
NDST1	3340	broad.mit.edu	37	5	149927851	149927851	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:149927851C>T	uc003lsk.3	+	12	2719	c.2217C>T	c.(2215-2217)GAC>GAT	p.D739D	NDST1_uc011dcj.1_Intron	NM_001543	NP_001534	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan	739	Heparan sulfate N-sulfotransferase 1.|Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(1)|skin(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCGGCTCTGACGCATCCTCGA	0.627000													9	31					0	0	0.004482	0	0	
FAT2	2196	broad.mit.edu	37	5	150932777	150932777	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:150932777C>T	uc003lue.3	-	5	4130	c.4117G>A	c.(4117-4119)GTA>ATA	p.V1373I	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1373	Extracellular (Potential).|Cadherin 12.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGCCCTCTACGCTGATGACC	0.587000													23	52					0	0	0.004656	0	0	
WWC1	23286	broad.mit.edu	37	5	167812251	167812251	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:167812251C>T	uc003lzu.2	+	3	358	c.265C>T	c.(265-267)CGG>TGG	p.R89W	WWC1_uc003lzv.2_Missense_Mutation_p.R89W|WWC1_uc011den.1_Missense_Mutation_p.R89W	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	89					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		AGTACAATGGCGGCGGGAGCA	0.542000													12	33					0	0	0.010729	0	0	
SLIT3	6586	broad.mit.edu	37	5	168096822	168096822	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:168096822G>A	uc003mab.2	-	35	4722	c.4302C>T	c.(4300-4302)TGC>TGT	p.C1434C	SLIT3_uc010jjg.2_Silent_p.C1441C	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1434	EGF-like 9.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AGCCGGGCTGGCACAGGCAGT	0.517000													9	32					0	0	0.008291	0	0	
KCNIP1	30820	broad.mit.edu	37	5	169931586	169931586	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:169931586G>A	uc003mas.2	+	1	539	c.10G>A	c.(10-12)GTC>ATC	p.V4I	KCNIP1_uc003map.2_Intron|KCNIP1_uc003mat.2_Missense_Mutation_p.V4I|KCNIP1_uc010jjp.2_5'UTR|KCNIP1_uc010jjq.2_Missense_Mutation_p.V4I	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	4					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CATGGGGGCCGTCATGGGCAC	0.577000													16	57					0	0	0.004007	0	0	
STC2	8614	broad.mit.edu	37	5	172744927	172744927	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:172744927C>T	uc003mco.1	-	4	2142	c.832G>A	c.(832-834)GGC>AGC	p.G278S	STC2_uc003mcn.1_Missense_Mutation_p.G193S	NM_003714	NP_003705	O76061	STC2_HUMAN	stanniocalcin 2 precursor	278					cell surface receptor linked signaling pathway|cell-cell signaling	extracellular region	hormone activity			skin(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00229)|all_lung(126;0.004)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.223)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GCCCCAAGGCCCCCGACTCTG	0.607000													25	60					0	0	0.002780	0	0	
HRH2	3274	broad.mit.edu	37	5	175110591	175110591	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:175110591G>A	uc003mdd.2	+	1	2128	c.355G>A	c.(355-357)GCT>ACT	p.A119T	HRH2_uc003mdc.3_Missense_Mutation_p.A119T	NM_022304	NP_071640	P25021	HRH2_HUMAN	histamine receptor H2 isoform 2	119	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|immune response	integral to plasma membrane	histamine receptor activity			ovary(1)	1	all_cancers(89;0.00805)|Renal(175;0.000269)|Lung NSC(126;0.00419)|all_lung(126;0.00711)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Colorectal(1;0.0154)|COAD - Colon adenocarcinoma(1;0.149)	Betazole(DB00272)|Cimetidine(DB00501)|Doxepin(DB01142)|Epinastine(DB00751)|Famotidine(DB00927)|Histamine Phosphate(DB00667)|Nizatidine(DB00585)|Ranitidine(DB00863)	CCGGTACTGCGCTGTCATGGA	0.532000													13	37					0	0	0.001855	0	0	
GPRIN1	114787	broad.mit.edu	37	5	176025084	176025084	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:176025084C>T	uc003meo.1	-	2	1927	c.1752G>A	c.(1750-1752)CCG>CCA	p.P584P		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	584						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCGAGGGCACCGGGACTGTTT	0.562000													32	67					0	0	0.002836	0	0	
DOK3	79930	broad.mit.edu	37	5	176931829	176931829	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:176931829T>C	uc003mhk.2	-	5	733	c.728A>G	c.(727-729)GAC>GGC	p.D243G	DOK3_uc003mhh.3_Missense_Mutation_p.D73G|DOK3_uc003mhi.3_Missense_Mutation_p.D187G|DOK3_uc003mhj.3_Missense_Mutation_p.D85G|DOK3_uc003mhl.2_Missense_Mutation_p.D187G	NM_024872	NP_079148	Q7L591	DOK3_HUMAN	docking protein 3 isoform 1	243	IRS-type PTB.					cytoplasm|plasma membrane	insulin receptor binding				0	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.191)			CTGGATGGCGTCTGGGCCCAG	0.687000													10	27					0	0	0.006214	0	0	
GRM6	2916	broad.mit.edu	37	5	178413361	178413361	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:178413361A>C	uc003mjr.2	-	8	2073	c.1894T>G	c.(1894-1896)TTC>GTC	p.F632V	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Missense_Mutation_p.F215V|GRM6_uc003mjs.1_Missense_Mutation_p.F252V	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	632	Helical; Name=2; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TAGATGAGGAAGATGCCGGTG	0.667000													6	27					0	0	0.001984	0	0	
ADAMTS2	9509	broad.mit.edu	37	5	178557042	178557042	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:178557042G>T	uc003mjw.2	-	16	2348	c.2348C>A	c.(2347-2349)GCC>GAC	p.A783D		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	783	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TTTGGAACTGGCATCCACGTC	0.567000													18	29					7.07596e-05	7.28877e-05	0.006122	1	0	
ADAMTS2	9509	broad.mit.edu	37	5	178634558	178634558	+	Missense_Mutation	SNP	C	T	T	rs35499429		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:178634558C>T	uc003mjw.2	-	4	847	c.847G>A	c.(847-849)GGG>AGG	p.G283R	ADAMTS2_uc011dgm.1_Missense_Mutation_p.G283R	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	283	Peptidase M12B.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		TGCTCCTTCCCGTGGAACTGC	0.632000													31	77					0	0	0.010818	0	0	
GNB2L1	10399	broad.mit.edu	37	5	180664659	180664659	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:180664659T>C	uc003mni.1	-	7	944	c.838A>G	c.(838-840)AAG>GAG	p.K280E	GNB2L1_uc003mnh.1_Missense_Mutation_p.K239E|GNB2L1_uc003mnk.1_Missense_Mutation_p.K202E|GNB2L1_uc003mnj.1_Missense_Mutation_p.K234E|GNB2L1_uc003mnl.1_Missense_Mutation_p.K64E	NM_006098	NP_006089	P63244	GBLP_HUMAN	guanine nucleotide binding protein (G protein),	280					apoptosis|cell cycle|gastrulation|interspecies interaction between organisms|negative regulation of cell growth|negative regulation of phagocytosis|negative regulation of translation|negative regulation of Wnt receptor signaling pathway|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of gastrulation|positive regulation of GTPase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein homooligomerization|positive regulation of protein phosphorylation|regulation of cell cycle|regulation of cell division|regulation of establishment of cell polarity|regulation of protein localization|rhythmic process	cytoskeleton|dendrite|midbody|nucleus|perikaryon|perinuclear region of cytoplasm|phagocytic cup|small ribosomal subunit	ion channel inhibitor activity|protein kinase C binding|protein phosphatase binding|protein tyrosine kinase inhibitor activity|receptor tyrosine kinase binding|SH2 domain binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.101)|all cancers(165;0.11)		GGTTCTGCCTTGCTGCTGGTA	0.493000													23	42					0	0	0.003954	0	0	
ALDH5A1	7915	broad.mit.edu	37	6	24520684	24520684	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:24520684G>A	uc003neg.2	+	6	954	c.926G>A	c.(925-927)GGC>GAC	p.G309D	ALDH5A1_uc003nef.2_Missense_Mutation_p.G322D	NM_001080	NP_001071	P51649	SSDH_HUMAN	aldehyde dehydrogenase 5A1 isoform 2 precursor	309					acetate metabolic process|central nervous system development|galactosylceramide metabolic process|gamma-aminobutyric acid catabolic process|glucose metabolic process|glutamate metabolic process|glutamine metabolic process|glutathione metabolic process|glycerophospholipid metabolic process|neurotransmitter catabolic process|neurotransmitter secretion|protein homotetramerization|respiratory electron transport chain|short-chain fatty acid metabolic process|succinate metabolic process	mitochondrial matrix|soluble fraction	succinate-semialdehyde dehydrogenase activity				0					Chlormerodrin(DB00534)|NADH(DB00157)|Succinic acid(DB00139)	GAGCTGGGCGGCCTTGCTCCA	0.512000													38	38					0	0	0.004878	0	0	
NKAPL	222698	broad.mit.edu	37	6	28228207	28228207	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:28228207G>A	uc003nkt.2	+	1	1110	c.1058G>A	c.(1057-1059)CGA>CAA	p.R353Q	ZKSCAN4_uc011dlb.1_5'Flank	NM_001007531	NP_001007532	Q5M9Q1	NKAPL_HUMAN	NFKB activating protein-like	353										upper_aerodigestive_tract(1)|ovary(1)	2						GAGGCTGTACGACTGCGTAAG	0.453000													31	92					0	0	0.009535	0	0	
PGBD1	84547	broad.mit.edu	37	6	28269950	28269950	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:28269950T>C	uc003nky.2	+	7	2689	c.2319T>C	c.(2317-2319)AAT>AAC	p.N773N	PGBD1_uc003nkz.2_Silent_p.N773N	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	773					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						CCATGAACAATGCATGGCAAC	0.408000													19	45					0	0	0.006122	0	0	
OR2H2	7932	broad.mit.edu	37	6	29556131	29556131	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:29556131G>A	uc003nmr.1	+	1	449	c.410G>A	c.(409-411)CGC>CAC	p.R137H	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	137	Cytoplasmic (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATCCACCCCCGCCTGTGCTGG	0.612000													38	81					0	0	0.008740	0	0	
HLA-F	3134	broad.mit.edu	37	6	29692855	29692855	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:29692855G>A	uc010jrl.2	+	4	782	c.658G>A	c.(658-660)GCC>ACC	p.A220T	HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Missense_Mutation_p.A220T|HLA-F_uc011dlx.1_Missense_Mutation_p.A220T|HLA-F_uc011dly.1_RNA	NM_018950	NP_061823	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	220	Alpha-3.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						TGACCATGAGGCCACCCTGAG	0.592000													10	45					0	0	0.008291	0	0	
TRIM10	10107	broad.mit.edu	37	6	30121852	30121852	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:30121852G>A	uc003npo.3	-	7	1416	c.1340C>T	c.(1339-1341)GCT>GTT	p.A447V	TRIM10_uc003npn.2_Intron	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	447	B30.2/SPRY.					cytoplasm	zinc ion binding				0						TCGGGTGACAGCGTTGGTGAA	0.612000													13	32					0	0	0.001368	0	0	
ABCF1	23	broad.mit.edu	37	6	30550906	30550906	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:30550906G>A	uc003nql.2	+	10	951	c.856G>A	c.(856-858)GTG>ATG	p.V286M	ABCF1_uc003nqk.2_Missense_Mutation_p.V287M|ABCF1_uc003nqm.2_Missense_Mutation_p.V248M|ABCF1_uc010jsb.2_Intron|MIR877_hsa-mir-877|MI0005561_5'Flank	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	286					inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						TGACTTCTCCGTGTCCCAGGC	0.498000													31	70					0	0	0.009535	0	0	
ABCF1	23	broad.mit.edu	37	6	30552049	30552049	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:30552049C>T	uc003nql.2	+	13	1278	c.1183C>T	c.(1183-1185)CGG>TGG	p.R395W	ABCF1_uc003nqk.2_Missense_Mutation_p.R396W|ABCF1_uc003nqm.2_Missense_Mutation_p.R357W|ABCF1_uc010jsb.2_Intron|MIR877_hsa-mir-877|MI0005561_5'Flank	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	395	ABC transporter 1.				inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						GGAAGAGGAGCGGCGGCTTCA	0.592000													24	42					0	0	0.002299	0	0	
BAT2	7916	broad.mit.edu	37	6	31600251	31600251	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:31600251C>T	uc003nvb.3	+	16	4050	c.3801C>T	c.(3799-3801)GCC>GCT	p.A1267A	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Silent_p.A1267A	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1267	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GGGAGAATGCCGCAAGGGGGT	0.647000													21	40					0	0	0.008871	0	0	
BAT2	7916	broad.mit.edu	37	6	31602658	31602658	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:31602658A>G	uc003nvb.3	+	21	5313	c.5064A>G	c.(5062-5064)GGA>GGG	p.G1688G	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Silent_p.G1688G	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1688	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						AGAGGCCTGGAGGCTCCTCAC	0.612000													14	58					0	0	0.002450	0	0	
TNXB	7148	broad.mit.edu	37	6	32023769	32023769	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:32023769G>A	uc003nzl.2	-	24	8528	c.8326C>T	c.(8326-8328)CGG>TGG	p.R2776W		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2834	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						ACCTGGGGCCGCCCGTCCCTG	0.657000													12	40					0	0	0.010729	0	0	
B3GALT4	8705	broad.mit.edu	37	6	33246260	33246260	+	Missense_Mutation	SNP	C	T	T	rs149120716		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:33246260C>T	uc003odr.2	+	1	1344	c.1064C>T	c.(1063-1065)GCG>GTG	p.A355V		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	355	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						GAAAGGACTGCGCCCTTTTGC	0.612000													33	80					0	0	0.004289	0	0	
RGL2	5863	broad.mit.edu	37	6	33264042	33264042	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:33264042C>G	uc003odv.2	-	6	664	c.531G>C	c.(529-531)GAG>GAC	p.E177D	RGL2_uc003odu.2_5'UTR|RGL2_uc010jur.2_Intron|RGL2_uc003odw.2_Missense_Mutation_p.E95D|RGL2_uc011drb.1_Missense_Mutation_p.E95D	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	177	N-terminal Ras-GEF.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						GACCCTTGGCCTCAGAGCCAA	0.577000													19	92					0	0	0.003330	0	0	
KIFC1	3833	broad.mit.edu	37	6	33371779	33371779	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:33371779G>A	uc003oef.3	+	6	1079	c.629G>A	c.(628-630)CGT>CAT	p.R210H	KIFC1_uc011drf.1_Missense_Mutation_p.R202H	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	210	Potential.				blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						AAGAACTTGCGTGCTTGTGTC	0.587000													27	67					0	0	0.004656	0	0	
ITPR3	3710	broad.mit.edu	37	6	33653429	33653429	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:33653429C>T	uc011drk.1	+	41	5711	c.5492C>T	c.(5491-5493)GCC>GTC	p.A1831V	ITPR3_uc003oey.2_5'Flank	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	1831	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						GGCCGCGTGGCCTCCTTCTCG	0.687000													15	28					0	0	0.003163	0	0	
SLC26A8	116369	broad.mit.edu	37	6	35967813	35967813	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:35967813G>A	uc003olm.2	-	4	512	c.401C>T	c.(400-402)TCG>TTG	p.S134L	SLC26A8_uc003oln.2_Missense_Mutation_p.S134L|SLC26A8_uc003oll.2_Missense_Mutation_p.S134L	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	134	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						ATAGATTACCGAAGAACAGAA	0.393000													31	97					0	0	0.004289	0	0	
DAAM2	23500	broad.mit.edu	37	6	39869799	39869799	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:39869799C>T	uc003oow.2	+	25	3349	c.3193C>T	c.(3193-3195)CGG>TGG	p.R1065W	DAAM2_uc003oox.2_Missense_Mutation_p.R1064W	NM_015345	NP_056160	Q86T65	DAAM2_HUMAN	dishevelled associated activator of	1065					actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)|skin(1)	3	Ovarian(28;0.0355)|Colorectal(47;0.196)					GGCAATAAACCGGCTAAATTA	0.567000													5	22					0	0	0.000602	0	0	
TFEB	7942	broad.mit.edu	37	6	41652368	41652368	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:41652368C>A	uc003oqs.1	-	10	1702	c.1400G>T	c.(1399-1401)AGC>ATC	p.S467I	TFEB_uc003oqt.1_Missense_Mutation_p.S467I|TFEB_uc003oqu.1_Missense_Mutation_p.S481I|TFEB_uc003oqr.1_Missense_Mutation_p.S382I	NM_007162	NP_009093	P19484	TFEB_HUMAN	transcription factor EB	467				EPLAPGHGSPFPSLSKKDLDLMLLDDSLLPLASDPLLSTMS PEASKASSRRSSFSMEEGDVL -> DRN (in Ref. 1).	embryonic placenta development|humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;7.61e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			CATGCTGAAGCTGCTCCGGCG	0.687000			T	ALPHA	renal (childhood epithelioid)								5	42					0.000602214	0.000613864	0.000602	1	0	
MED20	9477	broad.mit.edu	37	6	41877053	41877053	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:41877053A>G	uc003ork.2	-	3	498	c.377T>C	c.(376-378)GTG>GCG	p.V126A	MED20_uc003orj.2_Missense_Mutation_p.V61A|MED20_uc011duh.1_Intron|MED20_uc011dui.1_Intron|MED20_uc011duj.1_Missense_Mutation_p.V61A	NM_004275	NP_004266	Q9H944	MED20_HUMAN	Trf (TATA binding protein-related	126					regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	mediator complex	DNA-directed RNA polymerase activity|protein binding				0	Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000367)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			GACCGTGCCCACCTTCACCAG	0.557000													29	70					0	0	0.006320	0	0	
GTPBP2	54676	broad.mit.edu	37	6	43589437	43589437	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:43589437G>A	uc003ovs.2	-	12	1760	c.1723C>T	c.(1723-1725)CGG>TGG	p.R575W	GTPBP2_uc010jyv.2_Missense_Mutation_p.R487W|GTPBP2_uc003ovt.1_Intron	NM_019096	NP_061969	Q9BX10	GTPB2_HUMAN	GTP binding protein 2	575							GTP binding|GTPase activity			liver(1)|skin(1)	2	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000501)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			ACACCCTCCCGGAACAGCAGT	0.572000													31	55					0	0	0.010818	0	0	
SUPT3H	8464	broad.mit.edu	37	6	44922295	44922295	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:44922295C>A	uc003oxo.2	-	10	981	c.663G>T	c.(661-663)GAG>GAT	p.E221D	SUPT3H_uc003oxn.1_Missense_Mutation_p.E210D|SUPT3H_uc011dvv.1_Missense_Mutation_p.E58D|SUPT3H_uc003oxp.2_Missense_Mutation_p.E210D|SUPT3H_uc011dvw.1_Missense_Mutation_p.E124D	NM_181356	NP_852001	O75486	SUPT3_HUMAN	suppressor of Ty 3 homolog isoform 2	292					histone deubiquitination|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	STAGA complex|transcription factor TFTC complex	DNA binding|transcription coactivator activity			ovary(2)|breast(1)	3						TGGGTTTTATCTCCATACTGC	0.378000													27	57					7.38237e-10	7.79187e-10	0.006320	1	0	
BAI3	577	broad.mit.edu	37	6	69772890	69772890	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:69772890G>A	uc003pev.3	+	16	2846	c.2398G>A	c.(2398-2400)GAT>AAT	p.D800N	BAI3_uc010kak.2_Missense_Mutation_p.D800N	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	800	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CAAAACAACCGATTCGTTTCT	0.363000													13	53					0	0	0.001855	0	0	
C6orf221	154288	broad.mit.edu	37	6	74073542	74073542	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:74073542C>T	uc003pgt.3	+	3	666	c.613C>T	c.(613-615)CGG>TGG	p.R205W		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	205										skin(2)	2						AGTGACCCAGCGGTTTCGCGA	0.617000													6	51					0	0	0.001984	0	0	
IBTK	25998	broad.mit.edu	37	6	82909923	82909923	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:82909923C>T	uc003pjl.1	-	21	3487	c.2960G>A	c.(2959-2961)CGT>CAT	p.R987H	IBTK_uc011dyu.1_5'UTR|IBTK_uc011dyv.1_Missense_Mutation_p.R987H|IBTK_uc011dyw.1_Missense_Mutation_p.R786H|IBTK_uc010kbi.1_Missense_Mutation_p.R681H|IBTK_uc003pjm.2_Missense_Mutation_p.R987H	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	987					negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		TGAACGTTTACGTGGCTTCTT	0.299000													52	135					0	0	0.003610	0	0	
HTR1E	3354	broad.mit.edu	37	6	87725581	87725581	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:87725581C>T	uc003pli.2	+	2	1232	c.529C>T	c.(529-531)CAC>TAC	p.H177Y		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	177	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CACCATCCAGCACGACCATGT	0.522000													29	47					0	0	0.012213	0	0	
ORC3L	23595	broad.mit.edu	37	6	88318943	88318943	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:88318943A>G	uc003pmh.2	+	7	753	c.709A>G	c.(709-711)AGC>GGC	p.S237G	ORC3L_uc011dzl.1_Missense_Mutation_p.S237G|ORC3L_uc011dzm.1_Missense_Mutation_p.S237G|ORC3L_uc011dzn.1_RNA|ORC3L_uc003pmg.2_Missense_Mutation_p.S237G|ORC3L_uc003pmi.2_Missense_Mutation_p.S237G|ORC3L_uc011dzo.1_Missense_Mutation_p.S94G|ORC3L_uc011dzp.1_Missense_Mutation_p.S94G	NM_012381	NP_036513	Q9UBD5	ORC3_HUMAN	origin recognition complex, subunit 3 isoform 2	237					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0		all_cancers(76;9.05e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;5.29e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.0469)		CATAATTATCAGCAGGTAGAT	0.343000													31	57					0	0	0.009535	0	0	
BACH2	60468	broad.mit.edu	37	6	90661243	90661243	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:90661243G>A	uc011eab.1	-	7	1391	c.582C>T	c.(580-582)GCC>GCT	p.A194A	BACH2_uc003pnw.2_Silent_p.A194A|BACH2_uc010kch.2_Silent_p.A194A	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	194						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		GGATGGCGGCGGCCTCAAAGC	0.597000													22	53					0	0	0.010504	0	0	
BEND3	57673	broad.mit.edu	37	6	107391957	107391957	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:107391957C>T	uc003prs.2	-	5	1088	c.438G>A	c.(436-438)TCG>TCA	p.S146S		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	146										ovary(3)	3						GCAGGTCCCCCGAGGGAGGAT	0.572000													34	83					0	0	0.005524	0	0	
NKAIN2	154215	broad.mit.edu	37	6	124125394	124125394	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:124125394C>T	uc003pzo.2	+	1	326	c.49C>T	c.(49-51)CAA>TAA	p.Q17*	NKAIN2_uc003pzn.1_Nonsense_Mutation_p.Q17*|NKAIN2_uc003pzp.2_5'UTR|NKAIN2_uc010keq.2_Nonsense_Mutation_p.Q17*|NKAIN2_uc010kep.1_RNA	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	17	Helical; (Potential).					integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		CTGTGGCATGCAACTGGTAAG	0.537000													24	55					0	0	0.002299	0	0	
C6orf191	253582	broad.mit.edu	37	6	130164727	130164727	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:130164727C>A	uc003qbs.2	-	3	224	c.141G>T	c.(139-141)CTG>CTT	p.L47L		NM_001010876	NP_001010876	Q5VVB8	CF191_HUMAN	hypothetical protein LOC253582	47						integral to membrane				large_intestine(1)	1				GBM - Glioblastoma multiforme(226;0.0387)|all cancers(137;0.115)|OV - Ovarian serous cystadenocarcinoma(155;0.131)		CAAATGGAGCCAGGACATTCA	0.333000													36	80					1.22674e-20	1.37307e-20	0.008740	1	0	
PLAGL1	5325	broad.mit.edu	37	6	144269239	144269239	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:144269239G>A	uc003qjv.2	-	2	1301	c.35C>T	c.(34-36)ACG>ATG	p.T12M	PLAGL1_uc003qjx.2_Missense_Mutation_p.T12M|PLAGL1_uc003qjy.2_Missense_Mutation_p.T12M|PLAGL1_uc010khl.2_Missense_Mutation_p.T12M|PLAGL1_uc010khm.2_Missense_Mutation_p.T12M|PLAGL1_uc003qjz.2_Missense_Mutation_p.T12M|PLAGL1_uc003qka.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkb.2_Intron|PLAGL1_uc003qkc.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkd.2_Intron|PLAGL1_uc003qke.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkf.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkg.2_Intron|PLAGL1_uc003qkh.2_Missense_Mutation_p.T12M|PLAGL1_uc003qki.2_Intron|PLAGL1_uc003qkj.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkk.2_Intron|PLAGL1_uc003qkl.2_Intron|PLAGL1_uc003qkm.2_Missense_Mutation_p.T12M|PLAGL1_uc010khn.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkn.2_Intron|PLAGL1_uc003qko.2_Missense_Mutation_p.T12M|PLAGL1_uc003qkp.2_Intron|PLAGL1_uc003qjw.2_Intron	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	12	C2H2-type 1.				cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		GGTGAGGAACGTCTTGCCACA	0.512000													12	38					0	0	0.001368	0	0	
UTRN	7402	broad.mit.edu	37	6	145114977	145114977	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:145114977T>C	uc003qkt.2	+	62	9020	c.8928T>C	c.(8926-8928)TTT>TTC	p.F2976F		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	2976	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CAGATCTCTTTAAGGAAGTTG	0.453000													25	78					0	0	0.003954	0	0	
UST	10090	broad.mit.edu	37	6	149285691	149285691	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:149285691C>T	uc003qmg.2	+	5	969	c.673C>T	c.(673-675)CGC>TGC	p.R225C	uc003qmh.1_Intron	NM_005715	NP_005706	Q9Y2C2	UST_HUMAN	uronyl-2-sulfotransferase	225	Lumenal (Potential).				protein sulfation	Golgi membrane|integral to membrane	sulfotransferase activity			ovary(2)	2		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.78e-10)|GBM - Glioblastoma multiforme(68;0.138)		GCAGGAGGAGCGCTACCTGGT	0.567000													8	29					0	0	0.003080	0	0	
AKAP12	9590	broad.mit.edu	37	6	151674332	151674332	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:151674332G>A	uc011eep.1	+	4	5046	c.4806G>A	c.(4804-4806)CAG>CAA	p.Q1602Q	AKAP12_uc003qoe.2_Silent_p.Q1602Q|AKAP12_uc003qof.2_Silent_p.Q1504Q|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.Q1497Q	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1602				Q -> L (in Ref. 2; BAA19927).	G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		AGGAACCTCAGGCCTCTGCAC	0.488000													17	40					0	0	0.004990	0	0	
C6orf97	80129	broad.mit.edu	37	6	151857472	151857472	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:151857472C>T	uc003qol.2	+	2	166	c.77C>T	c.(76-78)TCG>TTG	p.S26L		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	26											0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		GATCATCTTTCGGAAGTCCCG	0.428000													23	40					0	0	0.003954	0	0	
EZR	7430	broad.mit.edu	37	6	159206516	159206516	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:159206516T>C	uc003qrt.3	-	4	507	c.292A>G	c.(292-294)ACC>GCC	p.T98A	EZR_uc011efs.1_Missense_Mutation_p.T66A|EZR_uc003qru.3_Missense_Mutation_p.T98A	NM_003379	NP_003370	P15311	EZRI_HUMAN	ezrin	98	FERM.				actin filament bundle assembly|axon guidance|cytoskeletal anchoring at plasma membrane|leukocyte cell-cell adhesion|membrane to membrane docking|regulation of cell shape	actin filament|apical plasma membrane|basolateral plasma membrane|cortical cytoskeleton|cytosol|extrinsic to membrane|filopodium|microvillus membrane|nucleolus|ruffle membrane	actin filament binding|cell adhesion molecule binding			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-17)|BRCA - Breast invasive adenocarcinoma(81;6.58e-06)		AGTTTCTGGGTGATGTCCTGG	0.552000													28	41					0	0	0.007291	0	0	
SLC22A2	6582	broad.mit.edu	37	6	160679635	160679635	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:160679635C>T	uc003qtf.2	-	1	325	c.155G>A	c.(154-156)CGG>CAG	p.R52Q	SLC22A2_uc003qte.1_Missense_Mutation_p.R52Q|SLC22A2_uc003qth.1_Missense_Mutation_p.R52Q	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	52	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		TCCGGGGCTCCGGCAGCGGTG	0.647000													21	49					0	0	0.002780	0	0	
MLLT4	4301	broad.mit.edu	37	6	168352841	168352841	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:168352841C>T	uc003qwd.2	+	29	4925	c.4783C>T	c.(4783-4785)CGC>TGC	p.R1595C	MLLT4_uc003qwb.1_Missense_Mutation_p.R1580C|MLLT4_uc003qwc.1_Missense_Mutation_p.R1596C|MLLT4_uc003qwg.1_Missense_Mutation_p.R905C	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1596	Potential.				adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		GATCATGCAGCGCCTGGAGGC	0.408000			T	MLL	AL								38	75					0	0	0.004289	0	0	
THBS2	7058	broad.mit.edu	37	6	169622298	169622298	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:169622298C>T	uc003qwt.2	-	20	3515	c.3267G>A	c.(3265-3267)CCG>CCA	p.P1089P		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	1089	TSP C-terminal.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		TCACCTGCCCCGGCGTGTTCC	0.647000													26	47					0	0	0.007291	0	0	
MAD1L1	8379	broad.mit.edu	37	7	2255800	2255800	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:2255800C>T	uc003slh.1	-	8	1067	c.801G>A	c.(799-801)GCG>GCA	p.A267A	MAD1L1_uc003sle.1_5'Flank|MAD1L1_uc003slf.1_Silent_p.A267A|MAD1L1_uc003slg.1_Silent_p.A267A|MAD1L1_uc010ksh.1_Silent_p.A267A|MAD1L1_uc003sli.1_Silent_p.A175A|MAD1L1_uc010ksi.1_Silent_p.A220A|MAD1L1_uc010ksj.2_Silent_p.A267A	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	267	Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		ACCGCAGGTGCGCGCTCTCCT	0.632000													36	50					0	0	0.005524	0	0	
TNRC18	84629	broad.mit.edu	37	7	5352370	5352370	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:5352370C>A	uc003soi.3	-	27	8501	c.8152G>T	c.(8152-8154)GGC>TGC	p.G2718C		NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	2718							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GTCTTCTTGCCTGGGGAGTGG	0.761000													7	13					0.00448238	0.0045623	0.004482	1	0	
FBXL18	80028	broad.mit.edu	37	7	5540810	5540810	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:5540810G>A	uc003soo.2	-	3	1184	c.1090C>T	c.(1090-1092)CGC>TGC	p.R364C	FBXL18_uc003son.3_Missense_Mutation_p.R364C	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	364										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		TCCGCCTTGCGGAGCAGCGAG	0.657000													13	20					0	0	0.001368	0	0	
DAGLB	221955	broad.mit.edu	37	7	6464452	6464452	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:6464452C>T	uc003sqa.2	-	8	1241	c.1071G>A	c.(1069-1071)CCG>CCA	p.P357P	DAGLB_uc003spz.2_5'Flank|DAGLB_uc011jwt.1_Silent_p.P171P|DAGLB_uc011jwu.1_Silent_p.P228P|DAGLB_uc003sqb.2_Silent_p.P76P|DAGLB_uc003sqc.2_Silent_p.P76P|DAGLB_uc011jwv.1_RNA|DAGLB_uc003sqd.3_Silent_p.P316P|DAGLB_uc011jww.1_RNA	NM_139179	NP_631918	Q8NCG7	DGLB_HUMAN	diacylglycerol lipase, beta isoform 1	357	Cytoplasmic (Potential).				lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.102)		CCACTAAAAACGGCAGCTCGT	0.547000													26	35					0	0	0.005443	0	0	
GLCCI1	113263	broad.mit.edu	37	7	8043675	8043675	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:8043675G>T	uc003srk.2	+	2	1154	c.595G>T	c.(595-597)GAC>TAC	p.D199Y		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	199											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		ATGCATGAAAGACAAAGCTAC	0.388000													30	56					5.77227e-19	6.39807e-19	0.008361	1	0	
ETV1	2115	broad.mit.edu	37	7	13949284	13949284	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:13949284T>G	uc011jxq.1	-	11	1652	c.913A>C	c.(913-915)ACC>CCC	p.T305P	ETV1_uc011jxn.1_Missense_Mutation_p.T265P|ETV1_uc011jxo.1_Missense_Mutation_p.T202P|ETV1_uc011jxp.1_Missense_Mutation_p.T247P|ETV1_uc003ssw.3_Missense_Mutation_p.T282P|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.T287P|ETV1_uc011jxs.1_Missense_Mutation_p.T287P|ETV1_uc010ktv.2_Silent_p.T173T	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	305					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						ACAACACAGGTGTCATCATAA	0.373000			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								25	75					0	0	0.007291	0	0	
HOXA9	3205	broad.mit.edu	37	7	27203381	27203381	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:27203381T>A	uc003syt.2	-	2	733	c.660A>T	c.(658-660)GAA>GAT	p.E220D		NM_152739	NP_689952	P31269	HXA9_HUMAN	homeobox A9	220	Homeobox.						protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.E220K(1)		lung(1)|central_nervous_system(1)	2						CTTTCTCCAGTTCCAGGGTCT	0.552000			T	NUP98|MSI2	AML*								19	67					0	0	0.006122	0	0	
CCDC129	223075	broad.mit.edu	37	7	31683217	31683217	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:31683217G>A	uc003tcj.1	+	11	3226	c.2233G>A	c.(2233-2235)GCA>ACA	p.A745T	CCDC129_uc011kad.1_Missense_Mutation_p.A755T|CCDC129_uc003tci.1_Missense_Mutation_p.A596T|CCDC129_uc011kae.1_Missense_Mutation_p.A771T|CCDC129_uc003tck.1_Missense_Mutation_p.A653T	NM_194300	NP_919276	Q6ZRS4	CC129_HUMAN	coiled-coil domain containing 129	745											0						TCCTGTTACCGCAACAGAAAC	0.522000													18	60					0	0	0.006122	0	0	
C7orf10	79783	broad.mit.edu	37	7	40277271	40277271	+	Silent	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:40277271T>C	uc003thn.1	+	7	567	c.522T>C	c.(520-522)GGT>GGC	p.G174G	C7orf10_uc003thm.1_Silent_p.G144G|C7orf10_uc003tho.1_Silent_p.G174G	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	181							transferase activity			ovary(2)	2						AGCGAGCTGGTTATGATGCTG	0.423000													12	60					0	0	0.003163	0	0	
ABCA13	154664	broad.mit.edu	37	7	48431646	48431646	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:48431646A>G	uc003toq.2	+	38	11808	c.11783A>G	c.(11782-11784)GAC>GGC	p.D3928G	ABCA13_uc010kys.1_Missense_Mutation_p.D1002G|ABCA13_uc003tos.1_Missense_Mutation_p.D754G|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3928	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						ATCCTGTTGGACAACCTCACC	0.507000													17	43					0	0	0.004990	0	0	
ZNF479	90827	broad.mit.edu	37	7	57188817	57188817	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:57188817C>T	uc010kzo.2	-	5	576	c.305G>A	c.(304-306)GGC>GAC	p.G102D		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			ATCTTTGATGCCCTGCTCTGG	0.363000													29	58					0	0	0.005524	0	0	
BAIAP2L1	55971	broad.mit.edu	37	7	97946561	97946561	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:97946561G>A	uc003upj.2	-	6	719	c.456C>T	c.(454-456)AAC>AAT	p.N152N		NM_018842	NP_061330	Q9UHR4	BI2L1_HUMAN	BAI1-associated protein 2-like 1	152	Potential.|IMD.				filopodium assembly|positive regulation of actin cytoskeleton reorganization|positive regulation of actin filament polymerization|response to bacterium|signal transduction	cell junction|cytoskeleton|cytosol|nucleus	actin binding|cytoskeletal adaptor activity|proline-rich region binding|SH3 domain binding			ovary(1)	1	all_cancers(62;4.34e-10)|all_epithelial(64;5e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0113)|all_lung(186;0.0126)		STAD - Stomach adenocarcinoma(171;0.215)			ATTTGAGTGCGTTTCGGCTTC	0.348000													41	99					0	0	0.008740	0	0	
Unknown	0	broad.mit.edu	37	7	100552645	100552645	+	RNA	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:100552645T>C	uc003uxk.1	+	1		c.1896T>C			uc003uxl.1_Missense_Mutation_p.S366P					Homo sapiens MUC3B mRNA for intestinal mucin, partial cds.																		AACACACCCCTCCCCACCCAC	0.567000													32	141					0	0	0.003755	0	0	
LRRC17	10234	broad.mit.edu	37	7	102574941	102574941	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:102574941G>C	uc003vau.2	+	2	970	c.581G>C	c.(580-582)AGT>ACT	p.S194T	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Missense_Mutation_p.S194T	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	194	LRRCT 1.				bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						AAGTGTGAAAGTCCACAAGAA	0.413000													22	80					0	0	0.012319	0	0	
SLC26A5	375611	broad.mit.edu	37	7	103018957	103018957	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:103018957G>A	uc003vbz.2	-	17	1957	c.1721C>T	c.(1720-1722)GCC>GTC	p.A574V	SLC26A5_uc003vbt.1_Missense_Mutation_p.A574V|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.A542V|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_Intron	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	574	Cytoplasmic (Potential).|STAS.				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						CTTCCGCATGGCCTTTCTCCT	0.478000													25	102					0	0	0.008361	0	0	
SRPK2	6733	broad.mit.edu	37	7	104766779	104766779	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:104766779C>T	uc003vct.2	-	14	1985	c.1798G>A	c.(1798-1800)GCC>ACC	p.A600T	SRPK2_uc003vcu.2_Missense_Mutation_p.A600T|SRPK2_uc003vcv.2_Missense_Mutation_p.A611T|SRPK2_uc003vcs.1_RNA	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	600	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						ATGATGTGGGCTATGTGGTCT	0.413000													11	55					0	0	0.001368	0	0	
SND1	27044	broad.mit.edu	37	7	127729669	127729669	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:127729669C>T	uc003vmi.2	+	22	2773	c.2547C>T	c.(2545-2547)GGC>GGT	p.G849G	SND1_uc010lle.2_Silent_p.G502G	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	849					gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						ATTCCAAGGGCGATGTGGGGC	0.587000													12	37					0	0	0.001855	0	0	
FLNC	2318	broad.mit.edu	37	7	128495311	128495311	+	Silent	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:128495311G>T	uc003vnz.3	+	43	7403	c.7194G>T	c.(7192-7194)GTG>GTT	p.V2398V	FLNC_uc003voa.3_Silent_p.V2365V	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2398	Filamin 21.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GCCCCTTTGTGGTGCCTGTGG	0.587000													31	52					1.61788e-16	1.77889e-16	0.012213	1	0	
FLNC	2318	broad.mit.edu	37	7	128497221	128497221	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:128497221C>A	uc003vnz.3	+	46	7820	c.7611C>A	c.(7609-7611)GCC>GCA	p.A2537A	FLNC_uc003voa.3_Silent_p.A2504A	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2537	Interaction with INPPL1.|Filamin 23.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GCTCGGGGGCCTTGTCTGTCA	0.607000													45	71					6.34439e-16	6.94234e-16	0.003610	1	0	
PLXNA4	91584	broad.mit.edu	37	7	131865401	131865401	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:131865401A>T	uc003vra.3	-	19	3812	c.3583T>A	c.(3583-3585)TCA>ACA	p.S1195T		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1195	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TGGACATCTGACACGGTCACG	0.602000													9	30					0	0	0.004482	0	0	
AKR1B10	57016	broad.mit.edu	37	7	134215432	134215432	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:134215432C>T	uc003vrr.2	+	2	424	c.104C>T	c.(103-105)GCC>GTC	p.A35V		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	35					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						GTGAAGGTGGCCATTGATGCA	0.393000													30	60					0	0	0.010818	0	0	
MLL3	58508	broad.mit.edu	37	7	151917681	151917681	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:151917681G>A	uc003wla.2	-	23	3858	c.3639C>T	c.(3637-3639)AGC>AGT	p.S1213S	MLL3_uc003wkz.2_Silent_p.S274S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1213					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GGACGGCCACGCTATTCTGAT	0.398000			N		medulloblastoma								16	39					0	0	0.003163	0	0	
HTR5A	3361	broad.mit.edu	37	7	154863212	154863212	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:154863212C>T	uc003wlu.1	+	1	667	c.603C>T	c.(601-603)GCC>GCT	p.A201A	uc011kvt.1_5'UTR|uc003wlt.2_5'UTR	NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	201	Helical; Name=5; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CTTCCTACGCCGTGTTCTCCA	0.612000													5	27					0	0	0.001168	0	0	
INSIG1	3638	broad.mit.edu	37	7	155093316	155093316	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:155093316C>T	uc003wly.2	+	3	664	c.453C>T	c.(451-453)CTC>CTT	p.L151L	INSIG1_uc011kvu.1_Intron|INSIG1_uc003wlz.2_Intron	NM_005542	NP_005533	O15503	INSI1_HUMAN	insulin induced gene 1 isoform 1	151	Cytoplasmic.				cell proliferation|ER-nuclear sterol response pathway	endoplasmic reticulum membrane|integral to membrane	protein binding				0	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.011)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACAGTCACCTCGGAGAACCCC	0.428000													42	87					0	0	0.003610	0	0	
CSMD1	64478	broad.mit.edu	37	8	3611465	3611465	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:3611465G>A	uc011kwk.1	-	6	1308	c.918C>T	c.(916-918)AAC>AAT	p.N306N		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	306	Extracellular (Potential).|CUB 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGAACTGAGCGTTAAATCCTT	0.418000													12	22					0	0	0.010729	0	0	
MFHAS1	9258	broad.mit.edu	37	8	8749608	8749608	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:8749608G>A	uc003wsj.1	-	1	1524	c.961C>T	c.(961-963)CTT>TTT	p.L321F		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	321	LRR 12.										0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		AAGGTGAGAAGCCGGCCCAGG	0.637000													10	35					0	0	0.006214	0	0	
AMAC1L2	83650	broad.mit.edu	37	8	11188791	11188791	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:11188791G>A	uc003wtp.1	+	1	297	c.176G>A	c.(175-177)CGT>CAT	p.R59H		NM_054028	NP_473369	Q96KT7	AMCL2_HUMAN	acyl-malonyl condensing enzyme	59	DUF6 1.					integral to membrane					0			STAD - Stomach adenocarcinoma(15;0.00676)	COAD - Colon adenocarcinoma(149;0.0563)		CCCCTTTCTCGTATGGCTTAC	0.647000													22	72					0	0	0.006320	0	0	
DLC1	10395	broad.mit.edu	37	8	12956978	12956978	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:12956978G>A	uc003wwm.2	-	9	3312	c.2868C>T	c.(2866-2868)AAC>AAT	p.N956N	DLC1_uc003wwk.1_Silent_p.N519N|DLC1_uc003wwl.1_Silent_p.N553N|DLC1_uc011kxx.1_Silent_p.N445N	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	956					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TGGTTCGGTCGTTGTCCACAT	0.582000													16	42					0	0	0.004007	0	0	
ADRA1A	148	broad.mit.edu	37	8	26627887	26627887	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:26627887C>T	uc003xfh.1	-	2	1616	c.1180G>A	c.(1180-1182)GTT>ATT	p.V394I	ADRA1A_uc003xfc.1_Missense_Mutation_p.V394I|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Missense_Mutation_p.V394I|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Missense_Mutation_p.V394I	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	394	Cytoplasmic (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	CATTCACAAACGCCATCCGTC	0.552000													38	85					0	0	0.005524	0	0	
HMBOX1	79618	broad.mit.edu	37	8	28827712	28827712	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:28827712A>G	uc003xhd.3	+	3	518	c.176A>G	c.(175-177)GAC>GGC	p.D59G	HMBOX1_uc010lvd.2_Missense_Mutation_p.D59G|HMBOX1_uc003xhc.3_Missense_Mutation_p.D59G|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Missense_Mutation_p.D59G|HMBOX1_uc011lay.1_Missense_Mutation_p.D59G|HMBOX1_uc003xhf.2_Missense_Mutation_p.D47G|HMBOX1_uc003xhg.2_Missense_Mutation_p.D47G	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	59					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		GAGCATAGTGACAAGTTTGGA	0.453000													29	58					0	0	0.008361	0	0	
ANK1	286	broad.mit.edu	37	8	41530179	41530179	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:41530179C>A	uc003xok.2	-	38	4873	c.4789G>T	c.(4789-4791)GGT>TGT	p.G1597C	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.G1597C|ANK1_uc003xoj.2_Missense_Mutation_p.G1597C|ANK1_uc003xol.2_Intron|ANK1_uc003xom.2_Missense_Mutation_p.G1638C	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1597	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CACTCGTGACCTGTGGCATCA	0.602000													32	65					5.77227e-19	6.39807e-19	0.008361	1	0	
REXO1L1	254958	broad.mit.edu	37	8	86573801	86573801	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:86573801G>A	uc011lfw.1	-	1	1468	c.1422C>T	c.(1420-1422)GAC>GAT	p.D474D		NM_172239	NP_758439	Q8IX06	GOR_HUMAN	exonuclease GOR	642						cytoplasm|nucleus	exonuclease activity|nucleic acid binding				0						AGGCGCTTGCGTCCTCGCTGG	0.667000													4	54					0	0	0.009096	0	0	
GDF6	392255	broad.mit.edu	37	8	97156923	97156923	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:97156923G>A	uc003yhp.2	-	2	1336	c.1236C>T	c.(1234-1236)CCC>CCT	p.P412P		NM_001001557	NP_001001557	Q6KF10	GDF6_HUMAN	growth differentiation factor 6 precursor	412					activin receptor signaling pathway|BMP signaling pathway|growth|pathway-restricted SMAD protein phosphorylation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(1)|breast(1)|pancreas(1)	3	Breast(36;2.67e-05)					GGGTGGAGCCGGGGTCCATGG	0.597000													7	23					0	0	0.001984	0	0	
VPS13B	157680	broad.mit.edu	37	8	100287380	100287380	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:100287380A>G	uc003yiv.2	+	19	2833	c.2722A>G	c.(2722-2724)AAG>GAG	p.K908E	VPS13B_uc003yiw.2_Missense_Mutation_p.K908E|VPS13B_uc003yiu.1_Missense_Mutation_p.K908E|VPS13B_uc003yix.1_Missense_Mutation_p.K379E	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	908					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TCATAGCACCAAGTGGCTCAA	0.383000													23	97					0	0	0.004656	0	0	
RNF19A	25897	broad.mit.edu	37	8	101271170	101271170	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:101271170G>T	uc003yjj.1	-	11	2448	c.2131C>A	c.(2131-2133)CCA>ACA	p.P711T	RNF19A_uc003yjk.1_Missense_Mutation_p.P711T	NM_015435	NP_056250	Q9NV58	RN19A_HUMAN	ring finger protein 19	711	Interaction with CASR.				microtubule cytoskeleton organization|protein modification process	centrosome|integral to membrane	ligase activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(14;3.5e-05)|all_epithelial(15;8.91e-08)|Lung NSC(17;0.000615)|all_lung(17;0.00166)		Epithelial(11;3.06e-11)|all cancers(13;5.78e-09)|OV - Ovarian serous cystadenocarcinoma(57;2.24e-05)|STAD - Stomach adenocarcinoma(118;0.0525)			CTGAGGGATGGAGCCTCAAAT	0.403000											OREG0018897	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	172					2.55665e-31	2.89951e-31	0.003610	1	0	
RIMS2	9699	broad.mit.edu	37	8	105105702	105105702	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:105105702C>T	uc003yls.2	+	21	2966	c.2725C>T	c.(2725-2727)CGA>TGA	p.R909*	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Nonsense_Mutation_p.R982*|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	365					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TTAACAGTATCGATCAGGATG	0.388000										HNSCC(12;0.0054)			33	116					0	0	0.003755	0	0	
SLC30A8	169026	broad.mit.edu	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	T	T	rs141202988		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:118170071C>T	uc003yoh.2	+	4	790	c.560C>T	c.(559-561)GCG>GTG	p.A187V	SLC30A8_uc010mcz.2_Missense_Mutation_p.A138V|SLC30A8_uc011lia.1_Missense_Mutation_p.A138V|SLC30A8_uc003yog.2_Missense_Mutation_p.A138V	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	187	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity	p.A187V(1)		ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			TGCGCAGTGGCGGCCAACATT	0.517000													20	87					0	0	0.010504	0	0	
MED30	90390	broad.mit.edu	37	8	118540959	118540959	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:118540959C>T	uc003yoj.2	+	2	398	c.247C>T	c.(247-249)CGC>TGC	p.R83C	MED30_uc011lib.1_Missense_Mutation_p.R83C	NM_080651	NP_542382	Q96HR3	MED30_HUMAN	TRAP/Mediator complex component TRAP25	83	Potential.				androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding				0	all_cancers(13;3.41e-25)|Lung NSC(37;3.02e-05)|Ovarian(258;0.00163)		STAD - Stomach adenocarcinoma(47;0.0266)			GGATAATCTTCGCCAACTTTC	0.393000													34	115					0	0	0.002836	0	0	
MTBP	27085	broad.mit.edu	37	8	121463538	121463538	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:121463538G>A	uc003ypc.1	+	4	446	c.401G>A	c.(400-402)AGC>AAC	p.S134N	MTBP_uc003ypb.1_Missense_Mutation_p.S134N|MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	134					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			GACAGTAATAGCAGGGAATCA	0.299000													20	46					0	0	0.008871	0	0	
ATAD2	29028	broad.mit.edu	37	8	124361578	124361578	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:124361578G>A	uc003yqh.3	-	14	1861	c.1753C>T	c.(1753-1755)CGA>TGA	p.R585*	ATAD2_uc011lii.1_Nonsense_Mutation_p.R376*|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Nonsense_Mutation_p.R585*|MIR548D1_hsa-mir-548d-1|MI0003668_5'Flank	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	585					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CCAGGCCTTCGTAAAGCAGGA	0.413000													31	115					0	0	0.010818	0	0	
RNF139	11236	broad.mit.edu	37	8	125499067	125499067	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:125499067C>T	uc003yrc.2	+	2	1520	c.1177C>T	c.(1177-1179)CTG>TTG	p.L393L		NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	393	Helical; (Potential).				negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			TTTTCCTGTGCTGTTTGTCTC	0.398000									Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				101	336					0	0	0.003610	0	0	
ZNF572	137209	broad.mit.edu	37	8	125989004	125989004	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:125989004G>A	uc003yrr.2	+	3	649	c.494G>A	c.(493-495)TGT>TAT	p.C165Y		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	165	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TGCTCTGAGTGTGCAAAATGT	0.423000										HNSCC(60;0.17)			33	77					0	0	0.010818	0	0	
ADCY8	114	broad.mit.edu	37	8	131848643	131848643	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:131848643C>A	uc003ytd.3	-	12	2811	c.2555G>T	c.(2554-2556)CGG>CTG	p.R852L	ADCY8_uc010mds.2_Missense_Mutation_p.R721L	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	852					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GGAGTTCAGCCGGAGGAAAAC	0.542000										HNSCC(32;0.087)			9	67					0.000442599	0.000451834	0.006214	1	0	
DENND3	22898	broad.mit.edu	37	8	142186754	142186754	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:142186754C>T	uc003yvy.2	+	15	2638	c.2360C>T	c.(2359-2361)GCG>GTG	p.A787V	DENND3_uc010mep.2_Missense_Mutation_p.A748V	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	787										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			ATCAGAGTGGCGTCCAAGAAA	0.478000													5	72					0	0	0.001168	0	0	
LY6E	4061	broad.mit.edu	37	8	144103156	144103156	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:144103156G>A	uc003yxn.2	+	4	500	c.346G>A	c.(346-348)GCC>ACC	p.A116T	LY6E_uc003yxm.2_Missense_Mutation_p.A116T|LY6E_uc003yxo.2_RNA	NM_001127213	NP_001120685	Q16553	LY6E_HUMAN	lymphocyte antigen 6 complex, locus E precursor	116					cell surface receptor linked signaling pathway	anchored to membrane|integral to plasma membrane					0	all_cancers(97;1.94e-10)|all_epithelial(106;1.22e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					CCTGCTGGGTGCCGGGCTGCT	0.672000													16	73					0	0	0.007413	0	0	
FAM83H	286077	broad.mit.edu	37	8	144810317	144810317	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:144810317G>A	uc003yzk.2	-	5	1383	c.1314C>T	c.(1312-1314)GGC>GGT	p.G438G	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	438					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGAAGTCGTCGCCGTGGCTGA	0.706000													8	19					0	0	0.004482	0	0	
PLEC	5339	broad.mit.edu	37	8	144993912	144993912	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:144993912G>A	uc003zaf.1	-	32	10658	c.10488C>T	c.(10486-10488)GGC>GGT	p.G3496G	PLEC_uc003zab.1_Silent_p.G3359G|PLEC_uc003zac.1_Silent_p.G3363G|PLEC_uc003zad.2_Silent_p.G3359G|PLEC_uc003zae.1_Silent_p.G3327G|PLEC_uc003zag.1_Silent_p.G3337G|PLEC_uc003zah.2_Silent_p.G3345G|PLEC_uc003zaj.2_Silent_p.G3386G	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3496	Plectin 12.|Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						CCAGGTAGATGCCGGCGAGGC	0.662000													19	41					0	0	0.007413	0	0	
OPLAH	26873	broad.mit.edu	37	8	145113453	145113453	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:145113453G>A	uc003zar.3	-	6	811	c.729C>T	c.(727-729)CCC>CCT	p.P243P	OPLAH_uc003zat.1_Silent_p.P21P	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	243							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	GCTGGATGGCGGGCGTGAGGT	0.687000													6	33					0	0	0.001984	0	0	
VPS28	51160	broad.mit.edu	37	8	145649444	145649444	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:145649444G>A	uc003zcr.1	-	8	581	c.528C>T	c.(526-528)GGC>GGT	p.G176G	VPS28_uc003zcs.1_Silent_p.G176G|VPS28_uc003zct.1_Silent_p.G176G	NM_016208	NP_057292	Q9UK41	VPS28_HUMAN	vacuolar protein sorting 28 isoform 1	176	VPS28 C-terminal.				cellular membrane organization|endosome transport|negative regulation of protein ubiquitination|protein transport	cytosol|late endosome membrane|plasma membrane	protein binding				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			CCGTCTGGCGGCCCTCAAAGT	0.697000													24	71					0	0	0.002780	0	0	
TYRP1	7306	broad.mit.edu	37	9	12695537	12695537	+	Silent	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:12695537A>G	uc003zkv.3	+	3	586	c.408A>G	c.(406-408)TTA>TTG	p.L136L		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	136	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		TTCTGGACTTAAGTAAAGAAG	0.423000									Oculocutaneous_Albinism				31	61					0	0	0.002836	0	0	
ZBTB5	9925	broad.mit.edu	37	9	37441517	37441517	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:37441517G>A	uc003zzx.2	-	2	1232	c.1032C>T	c.(1030-1032)AGC>AGT	p.S344S		NM_014872	NP_055687	O15062	ZBTB5_HUMAN	zinc finger and BTB domain containing 5	344					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(29;0.00733)|Lung(182;0.226)		AGGTCACATCGCTCACTTCAT	0.537000													30	63					0	0	0.009535	0	0	
APBA1	320	broad.mit.edu	37	9	72082835	72082835	+	Silent	SNP	G	A	A	rs141287424		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:72082835G>A	uc004ahh.2	-	5	1662	c.1386C>T	c.(1384-1386)GCC>GCT	p.A462A		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	462	PID.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GGTAATTGGCGGCAAAAATGA	0.552000													43	200					0	0	0.010771	0	0	
TRPM3	80036	broad.mit.edu	37	9	73152148	73152148	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:73152148C>T	uc004aid.2	-	25	4089	c.3845G>A	c.(3844-3846)CGC>CAC	p.R1282H	TRPM3_uc004ahu.2_Missense_Mutation_p.R1124H|TRPM3_uc004ahv.2_Missense_Mutation_p.R1084H|TRPM3_uc004ahw.2_Missense_Mutation_p.R1154H|TRPM3_uc004ahx.2_Missense_Mutation_p.R1141H|TRPM3_uc004ahy.2_Missense_Mutation_p.R1144H|TRPM3_uc004ahz.2_Missense_Mutation_p.R1131H|TRPM3_uc004aia.2_Missense_Mutation_p.R1129H|TRPM3_uc004aib.2_Missense_Mutation_p.R1119H|TRPM3_uc004aic.2_Missense_Mutation_p.R1282H	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1307	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GGTCCTCGAGCGGATTTTGTT	0.612000													23	86					0	0	0.003954	0	0	
KIF27	55582	broad.mit.edu	37	9	86452031	86452031	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:86452031C>T	uc004ana.2	-	18	4235	c.4091G>A	c.(4090-4092)CGT>CAT	p.R1364H	KIF27_uc010mpw.2_Missense_Mutation_p.R1298H|KIF27_uc010mpx.2_Missense_Mutation_p.R1267H	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1364					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						GGAAATTTGACGTAATTCTTT	0.448000													13	50					0	0	0.008871	0	0	
SHC3	53358	broad.mit.edu	37	9	91656996	91656996	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:91656996C>A	uc004aqg.2	-	10	1612	c.1305G>T	c.(1303-1305)TGG>TGT	p.W435C		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	435	CH1.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						CCGCAGCCGGCCAGGCCTGTG	0.562000													21	78					2.37509e-13	2.56615e-13	0.010504	1	0	
SECISBP2	79048	broad.mit.edu	37	9	91964783	91964783	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:91964783G>A	uc004aqj.1	+	13	1911	c.1831G>A	c.(1831-1833)GCC>ACC	p.A611T	SECISBP2_uc011ltk.1_Missense_Mutation_p.A610T|SECISBP2_uc004aqk.1_Missense_Mutation_p.A538T|SECISBP2_uc010mqo.1_Missense_Mutation_p.A316T|SECISBP2_uc011ltl.1_Missense_Mutation_p.A543T	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	611					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						GGACACAGAGGCCTCCCACCT	0.592000													19	76					0	0	0.010504	0	0	
FGD3	89846	broad.mit.edu	37	9	95738953	95738953	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:95738953A>G	uc004asw.2	+	3	1043	c.415A>G	c.(415-417)ACC>GCC	p.T139A	FGD3_uc004asx.2_Missense_Mutation_p.T139A|FGD3_uc004asz.2_Missense_Mutation_p.T139A	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	139					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						CTCTGAGAACACCCCCCAGAA	0.667000													5	24					0	0	0.001168	0	0	
ZNF169	169841	broad.mit.edu	37	9	97063569	97063569	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:97063569C>T	uc004aum.1	+	5	1834	c.1729C>T	c.(1729-1731)CGT>TGT	p.R577C		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	577	C2H2-type 13; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				GGAGTGTGGGCGTGGCTTTAG	0.557000													17	43					0	0	0.004007	0	0	
PTCH1	5727	broad.mit.edu	37	9	98209385	98209385	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:98209385G>A	uc004avk.3	-	23	4341	c.4153C>T	c.(4153-4155)CCT>TCT	p.P1385S	PTCH1_uc010mrn.2_Missense_Mutation_p.P177S|PTCH1_uc010mro.2_Missense_Mutation_p.P1234S|PTCH1_uc010mrp.2_Missense_Mutation_p.P1234S|PTCH1_uc010mrq.2_Missense_Mutation_p.P1234S|PTCH1_uc004avl.3_Missense_Mutation_p.P1234S|PTCH1_uc010mrr.2_Missense_Mutation_p.P1319S|PTCH1_uc004avm.3_Missense_Mutation_p.P1384S	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1385	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				CCAGGGACAGGCGGCGGGTGC	0.692000									Basal_Cell_Nevus_syndrome				13	68					0	0	0.002450	0	0	
TRIM14	9830	broad.mit.edu	37	9	100857274	100857274	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:100857274A>G	uc004ayd.2	-	4	593	c.575T>C	c.(574-576)ATG>ACG	p.M192T	TRIM14_uc004ayf.1_Missense_Mutation_p.M99T|TRIM14_uc011luz.1_5'Flank|TRIM14_uc011lva.1_5'Flank|TRIM14_uc004ayg.1_Missense_Mutation_p.M192T|TRIM14_uc004ayh.1_Missense_Mutation_p.M192T|TRIM14_uc004ayi.1_Missense_Mutation_p.M192T|TRIM14_uc004ayj.1_Missense_Mutation_p.M99T	NM_033220	NP_150089	Q14142	TRI14_HUMAN	tripartite motif protein TRIM14 isoform alpha	192						cytoplasm|intracellular	zinc ion binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.0559)				CCCGAGGCTCATCTGCTGCTG	0.622000													18	57					0	0	0.006122	0	0	
COL15A1	1306	broad.mit.edu	37	9	101829281	101829281	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:101829281C>A	uc004azb.1	+	40	3975	c.3769C>A	c.(3769-3771)CAT>AAT	p.H1257N		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	1257	Nonhelical region 10 (NC10).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				CTTATCTTCCCATTTGCAAGA	0.463000													20	68					1.56452e-12	1.67978e-12	0.007413	1	0	
TEX10	54881	broad.mit.edu	37	9	103090122	103090122	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:103090122C>T	uc004bas.2	-	8	1963	c.1748G>A	c.(1747-1749)CGA>CAA	p.R583Q	TEX10_uc011lvf.1_Missense_Mutation_p.R422Q|TEX10_uc011lvg.1_Missense_Mutation_p.R586Q	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	583						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		TTTATTTGCTCGTGCTGCAGC	0.433000													8	62					0	0	0.004482	0	0	
OR13C5	138799	broad.mit.edu	37	9	107360934	107360934	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:107360934G>A	uc011lvp.1	-	1	761	c.761C>T	c.(760-762)ACC>ATC	p.T254I		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GAGGAAGATGGTCCCACAGAA	0.433000													19	90					0	0	0.006122	0	0	
SVEP1	79987	broad.mit.edu	37	9	113242031	113242031	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:113242031G>T	uc010mtz.2	-	13	2708	c.2371C>A	c.(2371-2373)CGT>AGT	p.R791S	SVEP1_uc010mua.1_Missense_Mutation_p.R791S|SVEP1_uc004beu.2_Missense_Mutation_p.R791S	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	791					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTTGCAAAACGTTTTTCTAGA	0.338000													37	224					1.36161e-19	1.51659e-19	0.004289	1	0	
SLC46A2	57864	broad.mit.edu	37	9	115642093	115642093	+	Silent	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:115642093C>A	uc004bgk.2	-	4	1609	c.1377G>T	c.(1375-1377)GTG>GTT	p.V459V		NM_033051	NP_149040	Q9BY10	TSCOT_HUMAN	solute carrier family 46, member 2	459	Cytoplasmic (Potential).					integral to membrane|plasma membrane	symporter activity			central_nervous_system(1)	1						GTTTATAGGCCACGATGCTGT	0.368000													24	108					3.28513e-13	3.5438e-13	0.003954	1	0	
TNC	3371	broad.mit.edu	37	9	117849317	117849317	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:117849317G>A	uc004bjj.3	-	3	1055	c.693C>T	c.(691-693)TGC>TGT	p.C231C	TNC_uc010mvf.2_Silent_p.C231C	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	231	EGF-like 3.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CTCCATTTACGCACTTGCCCT	0.612000													24	72					0	0	0.002299	0	0	
RABGAP1	23637	broad.mit.edu	37	9	125836582	125836582	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:125836582T>C	uc011lzh.1	+	17	2262	c.2128T>C	c.(2128-2130)TAC>CAC	p.Y710H	RABGAP1_uc004bnl.3_RNA|RABGAP1_uc011lzj.1_Missense_Mutation_p.Y49H	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	710	Rab-GAP TBC.				cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						TCCTGACCTGTACAACCACTT	0.428000													18	90					0	0	0.012319	0	0	
NEK6	10783	broad.mit.edu	37	9	127101923	127101923	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:127101923C>T	uc004bog.2	+	8	845	c.696C>T	c.(694-696)TCC>TCT	p.S232S	NEK6_uc004bof.2_Silent_p.S250S|NEK6_uc004boh.2_Silent_p.S266S|NEK6_uc010mwj.2_Silent_p.S185S|NEK6_uc010mwk.2_Silent_p.S232S|NEK6_uc004boi.2_Silent_p.S232S	NM_014397	NP_055212	Q9HC98	NEK6_HUMAN	NIMA-related kinase 6 isoform 2	232	Protein kinase.				apoptosis|cell division|chromosome segregation|mitosis|peptidyl-serine phosphorylation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of mitotic metaphase/anaphase transition	cytoplasm|nucleus	ATP binding|kinesin binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|kidney(1)	3						ACATCTGGTCCCTGGGCTGTC	0.602000													35	137					0	0	0.004878	0	0	
GOLGA2	2801	broad.mit.edu	37	9	131028142	131028142	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:131028142C>A	uc011maw.1	-	10	683	c.670G>T	c.(670-672)GGG>TGG	p.G224W	GOLGA2_uc010mxw.2_Intron|GOLGA2_uc004bul.1_Missense_Mutation_p.G125W|GOLGA2_uc004bum.1_Missense_Mutation_p.G98W	NM_004486	NP_004477	Q08379	GOGA2_HUMAN	Golgi autoantigen, golgin subfamily a, 2	224	Potential.					Golgi cisterna membrane	protein binding			ovary(1)	1						ACGAGGATCCCTATGGTCTGA	0.512000													28	80					2.65835e-16	2.91822e-16	0.007291	1	0	
SPTAN1	6709	broad.mit.edu	37	9	131395598	131395598	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:131395598G>A	uc004bvl.3	+	56	7517	c.7404G>A	c.(7402-7404)TCG>TCA	p.S2468S	SPTAN1_uc004bvm.3_Silent_p.S2473S|SPTAN1_uc004bvn.3_Silent_p.S2448S|SPTAN1_uc004bvo.3_Silent_p.S235S|SPTAN1_uc004bvp.3_Silent_p.S211S	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	2468					actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						TCACCCGCTCGCTTTTCGTGA	0.632000													24	63					0	0	0.002780	0	0	
PKN3	29941	broad.mit.edu	37	9	131476529	131476529	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:131476529C>T	uc004bvw.2	+	11	1759	c.1366C>T	c.(1366-1368)CGC>TGC	p.R456C	PKN3_uc010myh.2_Missense_Mutation_p.R456C|PKN3_uc011mbk.1_Missense_Mutation_p.R6C	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	456					signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						GGCCTGGGGGCGCCTCGTCAT	0.662000													37	151					0	0	0.006230	0	0	
FAM73B	84895	broad.mit.edu	37	9	131825895	131825895	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:131825895G>A	uc004bxa.2	+	11	1341	c.1155G>A	c.(1153-1155)ATG>ATA	p.M385I	FAM73B_uc004bwy.2_RNA|FAM73B_uc004bwz.2_Intron|FAM73B_uc011mbn.1_Missense_Mutation_p.M385I	NM_032809	NP_116198	Q7L4E1	FA73B_HUMAN	hypothetical protein LOC84895	385						integral to membrane				skin(1)	1						CAGGCCTGATGACCAAGGCTG	0.582000													21	59					0	0	0.010504	0	0	
RAPGEF1	2889	broad.mit.edu	37	9	134501510	134501510	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:134501510G>A	uc004cbc.2	-	10	1580	c.1450C>T	c.(1450-1452)CAG>TAG	p.Q484*	RAPGEF1_uc004cbb.2_Nonsense_Mutation_p.Q502*|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Nonsense_Mutation_p.Q489*|RAPGEF1_uc004cbd.2_Nonsense_Mutation_p.Q489*	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	484					activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		TTGTCATACTGCGAGGGATGC	0.637000													5	30					0	0	0.000602	0	0	
SLC2A6	11182	broad.mit.edu	37	9	136340541	136340541	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:136340541T>G	uc004cee.2	-	5	850	c.755A>C	c.(754-756)CAG>CCG	p.Q252P	SLC2A6_uc004cef.2_Missense_Mutation_p.Q252P|SLC2A6_uc004ceg.2_Missense_Mutation_p.Q229P|SLC2A6_uc011mdj.1_3'UTR	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	252	Cytoplasmic (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		GACGTTGTCCTGGATCTGCTC	0.672000													8	24					0	0	0.003080	0	0	
FCN2	2220	broad.mit.edu	37	9	137778363	137778363	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:137778363C>T	uc004cfg.1	+	7	657	c.647C>T	c.(646-648)GCG>GTG	p.A216V	FCN2_uc004cfh.1_Missense_Mutation_p.A178V	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	216	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GCCGACGAGGCGGAGAAGTAC	0.572000													25	103					0	0	0.003330	0	0	
KCNT1	57582	broad.mit.edu	37	9	138651678	138651678	+	Silent	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:138651678C>T	uc011mdq.1	+	11	1082	c.1008C>T	c.(1006-1008)TGC>TGT	p.C336C	KCNT1_uc011mdr.1_Silent_p.C163C|KCNT1_uc010nbf.2_Silent_p.C291C|KCNT1_uc004cgo.1_Silent_p.C85C	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	336						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		TCATGATCTGCGTGGCCCTCG	0.642000													6	37					0	0	0.001984	0	0	
FAM69B	138311	broad.mit.edu	37	9	139617657	139617657	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr9:139617657G>A	uc004cik.2	+	5	821	c.727G>A	c.(727-729)GCC>ACC	p.A243T	FAM69B_uc004cil.2_Missense_Mutation_p.A156T|SNHG7_uc004cim.2_Intron	NM_152421	NP_689634	Q5VUD6	FA69B_HUMAN	hypothetical protein LOC138311	243	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane					0	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;1.03e-05)|Epithelial(140;0.00013)		GCACGCGGCCGCCCTTCCACC	0.706000													10	66					0	0	0.001855	0	0	
Unknown	0	broad.mit.edu	37	X	228142	228142	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:228142G>A	uc004cpd.1	-	1	654	c.43C>T	c.(43-45)CTG>TTG	p.L15L	uc004cpe.1_Silent_p.L128L	NM_012227	NP_036359			pseudoautosomal GTP-binding protein-like																		CCGTGCGGCAGCTGGGAGAGG	0.682000													13	22					0	0	0.001855	0	0	
ASMTL	8623	broad.mit.edu	37	X	1536899	1536899	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:1536899C>T	uc004cpx.1	-	11	1600	c.1489G>A	c.(1489-1491)GGA>AGA	p.G497R	ASMTL_uc011mhe.1_Missense_Mutation_p.G421R|ASMTL_uc004cpy.1_Missense_Mutation_p.G481R|ASMTL_uc011mhf.1_Missense_Mutation_p.G439R	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	497	ASMT-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GCCTGCGGTCCGGGGGGTTGG	0.597000													8	29					0	0	0.003080	0	0	
ACOT9	23597	broad.mit.edu	37	X	23740851	23740851	+	Silent	SNP	G	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:23740851G>A	uc004dap.2	-	6	539	c.393C>T	c.(391-393)CAC>CAT	p.H131H	ACOT9_uc004dao.2_Silent_p.H140H|ACOT9_uc004daq.2_Silent_p.H89H|ACOT9_uc004dar.2_Silent_p.H71H|ACOT9_uc011mjt.1_RNA|ACOT9_uc004das.2_Silent_p.H71H|ACOT9_uc004dat.1_Silent_p.H131H	NM_001033583	NP_001028755	Q9Y305	ACOT9_HUMAN	acyl-Coenzyme A thioesterase 2, mitochondrial	131					acyl-CoA metabolic process	mitochondrion	acetyl-CoA hydrolase activity|carboxylesterase activity			ovary(2)|pancreas(1)	3						GGATTTTGTTGTGCATGTAAC	0.368000													35	26					0	0	0.004878	0	0	
ALAS2	212	broad.mit.edu	37	X	55040074	55040074	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:55040074T>G	uc004dua.3	-	10	1583	c.1445A>C	c.(1444-1446)AAT>ACT	p.N482T	ALAS2_uc004dub.3_Missense_Mutation_p.N469T|ALAS2_uc004dud.3_Missense_Mutation_p.N445T	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	482					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	GAGTGCTGCATTGCCCACCTG	0.542000													3	21					0	0	0.004672	0	0	
NXF2B	728343	broad.mit.edu	37	X	101623733	101623733	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:101623733T>G	uc004ejb.3	-	19	2501	c.629A>C	c.(628-630)AAG>ACG	p.K210T	NXF2B_uc004eiz.3_Missense_Mutation_p.K122T|NXF2B_uc004eja.3_Missense_Mutation_p.K210T|NXF2_uc004eiy.3_Missense_Mutation_p.K210T	NM_001099686	NP_001093156	Q9GZY0	NXF2_HUMAN	nuclear RNA export factor 2B	210					mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|RNA binding			ovary(1)	1						TTGGCCTGGCTTCAACTTATT	0.478000													7	50					0	0	0.002450	0	0	
GPRASP1	9737	broad.mit.edu	37	X	101909850	101909850	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:101909850C>T	uc004ejj.3	+	5	1810	c.1009C>T	c.(1009-1011)CGA>TGA	p.R337*	GPRASP1_uc004eji.3_Nonsense_Mutation_p.R337*|GPRASP1_uc010nod.2_Nonsense_Mutation_p.R337*	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	337						cytoplasm	protein binding			ovary(1)|lung(1)	2						CAGGGCCAAGCGAGAAGCTTG	0.478000													15	48					0	0	0.004007	0	0	
RGAG1	57529	broad.mit.edu	37	X	109695155	109695155	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:109695155T>C	uc004eor.1	+	3	1556	c.1310T>C	c.(1309-1311)ATG>ACG	p.M437T	RGAG1_uc011msr.1_Missense_Mutation_p.M437T	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	437										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TCTGGAGCCATGACCACCTCA	0.507000													68	38					0	0	0.003610	0	0	
XPNPEP2	7512	broad.mit.edu	37	X	128873107	128873107	+	Translation_Start_Site	SNP	G	T	T			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:128873107G>T	uc004eut.1	+	1	162	c.-82G>T	c.(-84--80)AAGGC>AATGC		XPNPEP2_uc011mum.1_Translation_Start_Site	NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound						cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						GCCCAGGAAAGGCCTGAAGGA	0.637000													3	33					0.004672	0.00474121	0.004672	1	0	
KIFAP3	22920	broad.mit.edu	37	1	170024447	170024447	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:170024447delT	uc001ggv.2	-	2	434	c.163delA	c.(163-165)ATCfs	p.I55fs	KIFAP3_uc010ply.1_5'UTR|KIFAP3_uc001ggw.1_Intron	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	55					blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGAACTTACATTTTTTGACAT	0.333													48	31	---	---	---	---						.
LEMD1	93273	broad.mit.edu	37	1	205388453	205388453	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:205388453delT	uc001hcj.1	-	3	212	c.110delA	c.(109-111)AAGfs	p.K37fs	LEMD1_uc001hci.1_Frame_Shift_Del_p.K37fs|LEMD1_uc001hck.1_RNA|LEMD1_uc001hcl.1_Intron|LEMD1_uc001hcm.1_Intron|LEMD1_uc001hcn.1_Intron			Q68G75	LEMD1_HUMAN	RecName: Full=LEM domain-containing protein 1;          Short=LEMP-1; AltName: Full=Cancer/testis antigen 50;          Short=CT50;	37	LEM.					integral to membrane|nuclear envelope					0	Breast(84;0.247)		BRCA - Breast invasive adenocarcinoma(75;0.0938)			CTGTACTAACTTTTTTTCATA	0.433													62	95	---	---	---	---						.
OR2W5	441932	broad.mit.edu	37	1	247654684	247654684	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr1:247654684delG	uc001icz.1	+	1	255	c.255delG	c.(253-255)CTGfs	p.L85fs		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	85					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TGTGGAACCTGGGGGGTCCAG	0.532													45	61	---	---	---	---						.
ZNF248	57209	broad.mit.edu	37	10	38121593	38121593	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:38121593delA	uc001izd.1	-	6	1189	c.690delT	c.(688-690)TTTfs	p.F230fs	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Frame_Shift_Del_p.F230fs	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	230					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCTTATTTGTAAAAAATGCTG	0.363													28	62	---	---	---	---						.
CC2D2B	387707	broad.mit.edu	37	10	97779061	97779061	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:97779061delA	uc001kll.2	+	7	823	c.624delA	c.(622-624)TTAfs	p.L208fs	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Frame_Shift_Del_p.L208fs|uc009xvb.1_RNA	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	208										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		TTTGTCCCTTAAAAAGTGTAG	0.313													31	66	---	---	---	---						.
SLC18A2	6571	broad.mit.edu	37	10	119014792	119014792	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr10:119014792delC	uc001ldd.1	+	7	736	c.705delC	c.(703-705)GGCfs	p.G235fs	SLC18A2_uc009xyy.1_Frame_Shift_Del_p.G32fs	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	235	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	CTGCAGTGGGCCCCCCCTTCG	0.572													17	35	---	---	---	---						.
Unknown	0	broad.mit.edu	37	11	55065032	55065033	+	RNA	DEL	TT	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:55065032_55065033delTT	uc001nhl.1	-	2		c.390_391delAA								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		AAAGACTGCATTTTTTTTTAGG	0.396													24	47	---	---	---	---						.
MALAT1	378938	broad.mit.edu	37	11	65269498	65269498	+	RNA	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:65269498delT	uc010roh.1	+	1		c.4266delT			uc001ody.2_RNA|MALAT1_uc001odz.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						AATGATTTAGTTTTTTTCCCC	0.383													14	25	---	---	---	---						.
MALAT1	378938	broad.mit.edu	37	11	65271780	65271782	+	RNA	DEL	TTT	-	-	rs36002528		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:65271780_65271782delTTT	uc010roh.1	+	1		c.6548_6550delTTT			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TTGTTGTAGCTTTTTTTTTTTTT	0.429													10	10	---	---	---	---						.
PDGFD	80310	broad.mit.edu	37	11	103814312	103814312	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr11:103814312delT	uc001phq.2	-	5	1012	c.640delA	c.(640-642)ATTfs	p.I214fs	PDGFD_uc001php.2_Frame_Shift_Del_p.I208fs	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	214					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		AATTCTGCAATTTTTTTGTCC	0.438													13	26	---	---	---	---						.
DENND5B	160518	broad.mit.edu	37	12	31604972	31604973	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:31604972_31604973insA	uc001rki.1	-	5	1716_1717	c.1530_1531insT	c.(1528-1533)TTTACAfs	p.F510fs	DENND5B_uc001rkh.1_Frame_Shift_Ins_p.F545fs|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Frame_Shift_Ins_p.F532fs|DENND5B_uc001rkk.1_Frame_Shift_Ins_p.F432fs	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	510_511	dDENN.					integral to membrane				ovary(1)|central_nervous_system(1)	2						AACATCTGTGTAAAACGGTTAG	0.450													27	59	---	---	---	---						.
R3HDM2	22864	broad.mit.edu	37	12	57648750	57648750	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:57648750delC	uc009zpm.1	-	22	2772	c.2737delG	c.(2737-2739)GACfs	p.D913fs	R3HDM2_uc010srn.1_Intron|R3HDM2_uc001snu.2_Frame_Shift_Del_p.D608fs|R3HDM2_uc001snr.2_Frame_Shift_Del_p.D640fs|R3HDM2_uc001sns.2_Frame_Shift_Del_p.D913fs|R3HDM2_uc001snt.2_Frame_Shift_Del_p.D927fs|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	913						nucleus	nucleic acid binding			ovary(2)	2						CCACTGTTGTCCCCCCCACCC	0.632													17	39	---	---	---	---						.
WDR66	144406	broad.mit.edu	37	12	122386901	122386901	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:122386901delT	uc009zxk.2	+	8	1345	c.1203delT	c.(1201-1203)ACTfs	p.T401fs		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	401	WD 3.						calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		ACTACGTTACTTTTAACCCAA	0.239													23	53	---	---	---	---						.
ARL6IP4	51329	broad.mit.edu	37	12	123464969	123464970	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr12:123464969_123464970delGC	uc001ued.2	+	1	90_91	c.35_36delGC	c.(34-36)GGCfs	p.G12fs	ARL6IP4_uc001uec.2_Frame_Shift_Del_p.G12fs|ARL6IP4_uc001uee.2_Frame_Shift_Del_p.G12fs|ARL6IP4_uc001uef.2_Frame_Shift_Del_p.G12fs|ARL6IP4_uc001ueg.2_RNA|ARL6IP4_uc009zxt.2_5'Flank|ARL6IP4_uc001ueh.2_5'Flank|ARL6IP4_uc001uei.2_5'Flank	NM_018694	NP_061164	Q66PJ3	AR6P4_HUMAN	SRp25 nuclear protein isoform 1	12					RNA splicing	nucleus					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.11e-05)|Epithelial(86;0.000127)|BRCA - Breast invasive adenocarcinoma(302;0.107)		GAGGAGGGCGGCGCGCGCGAGG	0.713													7	6	---	---	---	---						.
BRCA2	675	broad.mit.edu	37	13	32911073	32911074	+	Frame_Shift_Ins	INS	-	A	A	rs80359335		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:32911073_32911074insA	uc001uub.1	+	11	2808_2809	c.2581_2582insA	c.(2581-2583)CAAfs	p.Q861fs		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	861	Interaction with NPM1.				cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAGAGTAATCCAAAAAAATCAA	0.322			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			27	46	---	---	---	---						.
ZC3H13	23091	broad.mit.edu	37	13	46543661	46543661	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:46543661delT	uc010tfw.1	-	13	3024	c.3018delA	c.(3016-3018)AAAfs	p.K1006fs	ZC3H13_uc001vaq.2_5'Flank|ZC3H13_uc001vas.1_Frame_Shift_Del_p.K1006fs|ZC3H13_uc001vat.1_Frame_Shift_Del_p.K1006fs	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	1006	Lys-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		ATTTTTTACGTTTTTTTTCAA	0.373													27	54	---	---	---	---						.
SLITRK1	114798	broad.mit.edu	37	13	84455642	84455642	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr13:84455642delT	uc001vlk.2	-	1	887	c.1delA	c.(1-3)ATGfs	p.M1fs		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	1						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CAAAGCAGCATTTTTAAAGCG	0.458													29	61	---	---	---	---						.
C14orf43	91748	broad.mit.edu	37	14	74205773	74205773	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:74205773delG	uc001xot.2	-	2	1722	c.939delC	c.(937-939)CCCfs	p.P313fs	C14orf43_uc001xou.2_Frame_Shift_Del_p.P313fs|C14orf43_uc010tud.1_Frame_Shift_Del_p.P313fs|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	313	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		TATCTGGGTTGGGGGGGAAGG	0.662													6	10	---	---	---	---						.
KIAA1409	57578	broad.mit.edu	37	14	94121610	94121610	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr14:94121610delG	uc001ybv.1	+	37	6048	c.5965delG	c.(5965-5967)GGGfs	p.G1989fs	KIAA1409_uc001ybs.1_Frame_Shift_Del_p.G1967fs	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2144						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TTTACCAGCAGGGGGTGCTAT	0.423													34	72	---	---	---	---						.
PARP16	54956	broad.mit.edu	37	15	65578609	65578610	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:65578609_65578610delAC	uc002aoo.2	-	1	409_410	c.155_156delGT	c.(154-156)TGTfs	p.C52fs	PARP16_uc002aop.2_Frame_Shift_Del_p.C52fs|PARP16_uc002aoq.2_Frame_Shift_Del_p.C52fs	NM_017851	NP_060321	Q8N5Y8	PAR16_HUMAN	poly (ADP-ribose) polymerase family, member 16	52						integral to membrane	NAD+ ADP-ribosyltransferase activity			lung(2)	2						CAAAGTCCTTACAGTCGCCGCG	0.663													7	10	---	---	---	---						.
AKAP13	11214	broad.mit.edu	37	15	86123175	86123177	+	In_Frame_Del	DEL	GAA	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr15:86123175_86123177delGAA	uc002blv.1	+	7	2046_2048	c.1876_1878delGAA	c.(1876-1878)GAAdel	p.E627del	AKAP13_uc002blt.1_In_Frame_Del_p.E627del|AKAP13_uc002blu.1_In_Frame_Del_p.E627del|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	627					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TCTTGGGCTGGAAGAAGATGTAA	0.433													37	84	---	---	---	---						.
CDH16	1014	broad.mit.edu	37	16	66947518	66947519	+	Splice_Site	INS	-	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr16:66947518_66947519insG	uc002eql.2	-	8	854	c.781_splice	c.e8-1	p.V261_splice	CDH16_uc010cdy.2_Splice_Site_p.V261_splice|CDH16_uc002eqm.2_Splice_Site_p.V164_splice	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor						homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		CCAGTGTACCTGGGGGGGACAC	0.594													25	55	---	---	---	---						.
KIAA0664	23277	broad.mit.edu	37	17	2601322	2601322	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:2601322delG	uc002fuy.1	-	10	1801	c.1715delC	c.(1714-1716)CCGfs	p.P572fs	KIAA0664_uc002fux.1_Frame_Shift_Del_p.P504fs|KIAA0664_uc010ckc.1_5'Flank	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	572							binding			breast(2)	2						GTTGAGGTCCGGGGGGAAGGT	0.692													3	4	---	---	---	---						.
SEZ6	124925	broad.mit.edu	37	17	27284223	27284224	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:27284223_27284224insG	uc002hdp.2	-	13	2725_2726	c.2531_2532insC	c.(2530-2532)CCTfs	p.P844fs	SEZ6_uc010crx.1_Frame_Shift_Ins_p.P39fs|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Frame_Shift_Ins_p.P844fs|SEZ6_uc002hdq.1_Frame_Shift_Ins_p.P719fs	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	844	Extracellular (Potential).|Sushi 5.					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			CACCATTCTCAGGGGCACTGAG	0.589													22	51	---	---	---	---						.
RPS6KB1	6198	broad.mit.edu	37	17	58022829	58022829	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:58022829delA	uc002ixy.2	+	14	1393	c.1290delA	c.(1288-1290)CCAfs	p.P430fs	RPS6KB1_uc010ddj.1_Frame_Shift_Del_p.P430fs|RPS6KB1_uc010wom.1_Frame_Shift_Del_p.P377fs|RPS6KB1_uc010won.1_Frame_Shift_Del_p.P407fs|RPS6KB1_uc010woo.1_Frame_Shift_Del_p.P365fs|RPS6KB1_uc002ixz.2_RNA	NM_003161	NP_003152	P23443	KS6B1_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	430	Autoinhibitory domain.				apoptosis|G1/S transition of mitotic cell cycle|insulin receptor signaling pathway|negative regulation of apoptosis|phosphatidylinositol-mediated signaling|positive regulation of mitotic cell cycle|positive regulation of translational initiation|TOR signaling cascade	cell junction|cytoplasm|cytosol|mitochondrial outer membrane|nucleus|nucleus|synapse|synaptosome	ATP binding|protein binding|protein kinase activity			large_intestine(1)	1	all_cancers(5;1.63e-13)|Breast(5;2.91e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.57e-12)|all cancers(12;6.41e-11)			CCTTTGAACCAAAAATCCGAT	0.368													13	30	---	---	---	---						.
PPM1D	8493	broad.mit.edu	37	17	58740439	58740439	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:58740439delT	uc002iyt.1	+	6	1566	c.1344delT	c.(1342-1344)AATfs	p.N448fs	PPM1D_uc010ddm.1_RNA	NM_003620	NP_003611	O15297	PPM1D_HUMAN	protein phosphatase 1D	448					negative regulation of cell proliferation|protein dephosphorylation|response to radiation	nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein binding|protein serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;6.75e-12)|all cancers(12;1.96e-10)			TCTCAGAGAATTTTTTAGAGG	0.448											OREG0031485	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	38	82	---	---	---	---						.
TEX2	55852	broad.mit.edu	37	17	62272340	62272340	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr17:62272340delT	uc002jec.2	-	3	1933	c.1760delA	c.(1759-1761)AATfs	p.N587fs	TEX2_uc002jed.2_Frame_Shift_Del_p.N587fs|TEX2_uc002jee.2_Frame_Shift_Del_p.N587fs	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	587					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		CCTGGATATATTTTTATTGGG	0.443													32	68	---	---	---	---						.
CXADRP3	440224	broad.mit.edu	37	18	14478662	14478662	+	RNA	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr18:14478662delT	uc010xai.1	-	3		c.902delA				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						AGAAGAAGCATTTTTTTACAG	0.413													14	26	---	---	---	---						.
C3	718	broad.mit.edu	37	19	6697481	6697481	+	Frame_Shift_Del	DEL	G	-	-	rs137956083		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:6697481delG	uc002mfm.2	-	21	2732	c.2670delC	c.(2668-2670)CCCfs	p.P890fs		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	890					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ACGAGGACTTGGGGGGGATGG	0.572													17	38	---	---	---	---						.
MAP2K7	5609	broad.mit.edu	37	19	7977071	7977073	+	In_Frame_Del	DEL	AAG	-	-	rs139511301	by1000genomes	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:7977071_7977073delAAG	uc002mit.2	+	10	1182_1184	c.1117_1119delAAG	c.(1117-1119)AAGdel	p.K373del	MAP2K7_uc002miv.2_In_Frame_Del_p.K380del|MAP2K7_uc010xka.1_RNA|MAP2K7_uc010xkb.1_In_Frame_Del_p.K380del|MAP2K7_uc010dvv.2_In_Frame_Del_p.K248del	NM_145185	NP_660186	O14733	MP2K7_HUMAN	mitogen-activated protein kinase kinase 7	373	Protein kinase.				activation of JUN kinase activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus	ATP binding|JUN kinase kinase activity|magnesium ion binding|protein binding|protein kinase binding|protein phosphatase binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(7)|central_nervous_system(2)|ovary(1)|lung(1)	11					Etoposide(DB00773)	AAAGTATAATAAGCTACTTGTGA	0.596													26	59	---	---	---	---						.
CYP4F22	126410	broad.mit.edu	37	19	15648181	15648181	+	Frame_Shift_Del	DEL	C	-	-	rs139235894		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:15648181delC	uc002nbh.3	+	5	544	c.377delC	c.(376-378)GCCfs	p.A126fs		NM_173483	NP_775754	Q6NT55	CP4FN_HUMAN	cytochrome P450, family 4, subfamily F,	126						endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen			ovary(1)|pancreas(1)	2						GCTGCCATCGCCCCCAAGGAT	0.408													30	68	---	---	---	---						.
ZNF793	390927	broad.mit.edu	37	19	38028415	38028415	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:38028415delT	uc010efm.2	+	8	1297	c.855delT	c.(853-855)TGTfs	p.C285fs	ZNF793_uc010xts.1_Frame_Shift_Del_p.C285fs|ZNF793_uc010efo.2_Intron	NM_001013659	NP_001013681	Q6ZN11	ZN793_HUMAN	zinc finger protein 793	285	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CCTTTGAATGTTTTTTTTGTG	0.463													14	24	---	---	---	---						.
ZNF473	25888	broad.mit.edu	37	19	50548684	50548684	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:50548684delT	uc002prn.2	+	5	1221	c.984delT	c.(982-984)GCTfs	p.A328fs	ZNF473_uc002prm.2_Frame_Shift_Del_p.A328fs|ZNF473_uc010ybo.1_Frame_Shift_Del_p.A316fs	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	328	Interaction with SLBP/pre-mRNA complex.|C2H2-type 3.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		GCGGCAAGGCTTTTACCCGGA	0.498													48	86	---	---	---	---						.
ZNF530	348327	broad.mit.edu	37	19	58118568	58118568	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr19:58118568delA	uc002qpk.2	+	3	1895	c.1675delA	c.(1675-1677)AAAfs	p.K559fs	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	559	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TTTTACCCGCAAAAATCACCT	0.448													43	67	---	---	---	---						.
HNMT	3176	broad.mit.edu	37	2	138758556	138758558	+	In_Frame_Del	DEL	GTT	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:138758556_138758558delGTT	uc002tvc.2	+	4	407_409	c.259_261delGTT	c.(259-261)GTTdel	p.V88del	HNMT_uc002tvf.2_In_Frame_Del_p.V88del	NM_006895	NP_008826	P50135	HNMT_HUMAN	histamine N-methyltransferase isoform 1	88					respiratory gaseous exchange	cytoplasm	histamine N-methyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.125)	Amodiaquine(DB00613)|Histamine Phosphate(DB00667)|Quinacrine(DB01103)	CAACAATGAAGTTGTTGAGCCAA	0.399													22	46	---	---	---	---						.
BAZ2B	29994	broad.mit.edu	37	2	160335159	160335161	+	In_Frame_Del	DEL	AGA	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr2:160335159_160335161delAGA	uc002uao.2	-	3	422_424	c.70_72delTCT	c.(70-72)TCTdel	p.S24del	BAZ2B_uc002uap.2_In_Frame_Del_p.S24del|BAZ2B_uc002uas.1_In_Frame_Del_p.S24del|BAZ2B_uc002uau.1_In_Frame_Del_p.S24del|BAZ2B_uc002uat.3_In_Frame_Del_p.S24del|BAZ2B_uc010fop.1_In_Frame_Del_p.S24del	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	24					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						CTGAAGCCACAGAAGGTGTCGAA	0.429													39	76	---	---	---	---						.
SCUBE1	80274	broad.mit.edu	37	22	43634962	43634963	+	Splice_Site	INS	-	G	G			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr22:43634962_43634963insG	uc003bdt.1	-	7	816	c.728_splice	c.e7-1	p.E243_splice	SCUBE1_uc003bdu.1_Intron	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1						adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				CGCACGTCTCTGGGGAGGGAAA	0.485													20	15	---	---	---	---						.
GMPS	8833	broad.mit.edu	37	3	155633847	155633849	+	In_Frame_Del	DEL	GAG	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:155633847_155633849delGAG	uc003faq.2	+	9	1413_1415	c.1078_1080delGAG	c.(1078-1080)GAGdel	p.E361del	GMPS_uc011bom.1_In_Frame_Del_p.E262del	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	361					glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CTTGAAACCAGAGGAGGTTTTCC	0.379			T	MLL	AML								18	31	---	---	---	---						.
SERPINI1	5274	broad.mit.edu	37	3	167507159	167507159	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:167507159delA	uc003ffa.3	+	2	441	c.243delA	c.(241-243)CTAfs	p.L81fs	SERPINI1_uc003ffb.3_Frame_Shift_Del_p.L81fs	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	81					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						ATGACAGCCTAAAAAATGGTA	0.388													29	63	---	---	---	---						.
GP5	2814	broad.mit.edu	37	3	194118899	194118899	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr3:194118899delC	uc003ftv.1	-	2	144	c.113delG	c.(112-114)GGCfs	p.G38fs		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	38	LRRNT.|Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		CGCCACGTCGCCCCCCGAGCA	0.692													21	40	---	---	---	---						.
FGFBP1	9982	broad.mit.edu	37	4	15938178	15938179	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:15938178_15938179delTT	uc003gom.2	-	2	195_196	c.77_78delAA	c.(76-78)AAAfs	p.K26fs		NM_005130	NP_005121	Q14512	FGFP1_HUMAN	fibroblast growth factor binding protein 1	26					cell-cell signaling|negative regulation of cell proliferation|signal transduction	extracellular space|plasma membrane	heparin binding				0						CATTCTTCACTTTTTTTTTCCC	0.525													34	71	---	---	---	---						.
CLGN	1047	broad.mit.edu	37	4	141327187	141327188	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:141327187_141327188delCT	uc011chi.1	-	6	545_546	c.327_328delAG	c.(325-330)AGAGGAfs	p.R109fs	CLGN_uc003iii.2_Frame_Shift_Del_p.R109fs	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	109_110	Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					AATACCAGTCCTCTGTCACCAG	0.337													25	21	---	---	---	---						.
IRF2	3660	broad.mit.edu	37	4	185340707	185340708	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr4:185340707_185340708insA	uc003iwf.3	-	3	302_303	c.102_103insT	c.(100-105)TTTCAGfs	p.F34fs		NM_002199	NP_002190	P14316	IRF2_HUMAN	interferon regulatory factor 2	34_35	IRF tryptophan pentad repeat.				blood coagulation|cell proliferation|interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	focal adhesion|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(41;7.86e-14)|Lung NSC(41;1.87e-13)|Colorectal(36;0.00146)|Hepatocellular(41;0.00826)|Renal(120;0.00992)|Prostate(90;0.0115)|all_neural(102;0.0573)|all_hematologic(60;0.0592)		all cancers(43;3.94e-27)|Epithelial(43;5.3e-24)|OV - Ovarian serous cystadenocarcinoma(60;1.06e-10)|Colorectal(24;7.98e-07)|STAD - Stomach adenocarcinoma(60;3.95e-05)|GBM - Glioblastoma multiforme(59;8.3e-05)|COAD - Colon adenocarcinoma(29;0.000106)|BRCA - Breast invasive adenocarcinoma(30;0.000311)|LUSC - Lung squamous cell carcinoma(40;0.0128)|READ - Rectum adenocarcinoma(43;0.0419)		CAGGGGATCTGAAAAATCTTCT	0.426													35	56	---	---	---	---						.
FAM13B	51306	broad.mit.edu	37	5	137284728	137284728	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr5:137284728delT	uc003lbz.2	-	17	2544	c.2010delA	c.(2008-2010)AAAfs	p.K670fs	FAM13B_uc003lcb.2_Frame_Shift_Del_p.K574fs|FAM13B_uc003lca.2_Frame_Shift_Del_p.K670fs	NM_016603	NP_057687	Q9NYF5	FA13B_HUMAN	hypothetical protein LOC51306 isoform 1	670					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						CTTTAGATGGTTTTTTCTCCT	0.383													52	108	---	---	---	---						.
PRRT1	80863	broad.mit.edu	37	6	32118218	32118218	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:32118218delC	uc003nzt.2	-	2	601	c.485delG	c.(484-486)GGCfs	p.G162fs	PRRT1_uc003nzs.2_Frame_Shift_Del_p.G203fs|PRRT1_uc003nzu.2_Frame_Shift_Del_p.G54fs	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	162					response to biotic stimulus	integral to membrane				breast(1)	1						CGCTACGTAGCCCCCCAGCGG	0.617													9	18	---	---	---	---						.
SYNGAP1	8831	broad.mit.edu	37	6	33411708	33411708	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr6:33411708delG	uc011dri.1	+	15	3574	c.3379delG	c.(3379-3381)GGGfs	p.G1127fs	SYNGAP1_uc010juy.2_Frame_Shift_Del_p.G1098fs|SYNGAP1_uc010juz.2_Frame_Shift_Del_p.G839fs	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	1127					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						CGGAGGGGGTGGGGGGCTGAA	0.677													8	4	---	---	---	---						.
C7orf50	84310	broad.mit.edu	37	7	1037311	1037311	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:1037311delG	uc003sju.2	-	5	605	c.535delC	c.(535-537)CTGfs	p.L179fs	C7orf50_uc003sjs.2_RNA|C7orf50_uc011jvt.1_Frame_Shift_Del_p.L179fs|C7orf50_uc011jvu.1_Frame_Shift_Del_p.L179fs	NM_032350	NP_115726	Q9BRJ6	CG050_HUMAN	hypothetical protein LOC84310	179							protein binding				0		Ovarian(82;0.0779)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0216)|OV - Ovarian serous cystadenocarcinoma(56;1.3e-15)		CTCCCCGGCAGGGGGGGATCA	0.721													15	26	---	---	---	---						.
CYP51A1	1595	broad.mit.edu	37	7	91752448	91752450	+	In_Frame_Del	DEL	AAG	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:91752448_91752450delAAG	uc003ulm.3	-	7	1232_1234	c.1070_1072delCTT	c.(1069-1074)CCTTTA>CTA	p.P357del	CYP51A1_uc011khn.1_In_Frame_Del_p.P252del|CYP51A1_uc003uln.3_In_Frame_Del_p.P294del	NM_000786	NP_000777	Q16850	CP51A_HUMAN	cytochrome P450, family 51, subfamily A,	351					cholesterol biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|sterol 14-demethylase activity				0	all_cancers(62;2.16e-09)|all_epithelial(64;3.86e-08)|Breast(17;0.00206)|all_lung(186;0.169)|all_hematologic(106;0.215)|Lung NSC(181;0.227)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)		Fluconazole(DB00196)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Miconazole(DB01110)|Terconazole(DB00251)	TCATAAGTTAAAGGAGGCAGATT	0.365													28	64	---	---	---	---						.
WNT2	7472	broad.mit.edu	37	7	116937798	116937798	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:116937798delC	uc003viz.2	-	4	1021	c.721delG	c.(721-723)GCCfs	p.A241fs	WNT2_uc003vja.2_Frame_Shift_Del_p.A145fs	NM_003391	NP_003382	P09544	WNT2_HUMAN	wingless-type MMTV integration site family	241					atrial cardiac muscle tissue morphogenesis|canonical Wnt receptor signaling pathway|cardiac epithelial to mesenchymal transition|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|dorsal/ventral axis specification|iris morphogenesis|labyrinthine layer blood vessel development|lens development in camera-type eye|lung induction|mammary gland epithelium development|neuron differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of fibroblast proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|proteinaceous extracellular matrix	cytokine activity|frizzled binding|frizzled-2 binding|signal transducer activity			breast(2)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	7	all_epithelial(6;2.24e-06)|Lung NSC(10;0.000936)|all_lung(10;0.00109)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		ACCTGGATGGCCCCATTGTAC	0.522													39	78	---	---	---	---						.
RBM28	55131	broad.mit.edu	37	7	127973348	127973349	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr7:127973348_127973349insA	uc003vmp.2	-	9	1129_1130	c.1014_1015insT	c.(1012-1017)TTTATCfs	p.F338fs	RBM28_uc003vmo.2_5'UTR|RBM28_uc011koj.1_Frame_Shift_Ins_p.F197fs|RBM28_uc011kok.1_Frame_Shift_Ins_p.F285fs	NM_018077	NP_060547	Q9NW13	RBM28_HUMAN	RNA binding motif protein 28	338_339	RRM 3.				mRNA processing|RNA splicing	Golgi apparatus|nucleolus|spliceosomal complex	nucleotide binding|RNA binding			ovary(2)	2						ACATACCTGATAAAAACAGTTT	0.386													19	38	---	---	---	---						.
GPR124	25960	broad.mit.edu	37	8	37691605	37691605	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:37691605delG	uc003xkj.2	+	11	1930	c.1567delG	c.(1567-1569)GGGfs	p.G523fs	GPR124_uc010lvy.2_Frame_Shift_Del_p.G523fs	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	523	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			GGAGCGCATTGGGGGGGCCGC	0.687													23	38	---	---	---	---						.
PRKDC	5591	broad.mit.edu	37	8	48743276	48743276	+	Frame_Shift_Del	DEL	T	-	-	rs67313876		TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chr8:48743276delT	uc003xqi.2	-	62	8344	c.8287delA	c.(8287-8289)ATGfs	p.M2763fs	PRKDC_uc003xqj.2_Frame_Shift_Del_p.M2763fs|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2763	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TCCTGCTTCATTTTTAACTCA	0.483								NHEJ					34	57	---	---	---	---						.
MAGEE2	139599	broad.mit.edu	37	X	75004754	75004754	+	Frame_Shift_Del	DEL	G	-	-	rs61732441	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:75004754delG	uc004ecj.1	-	1	318	c.133delC	c.(133-135)CAGfs	p.Q45fs		NM_138703	NP_619648	Q8TD90	MAGE2_HUMAN	melanoma antigen family E, 2	45										ovary(1)|skin(1)	2						TGAGGGCACTGGGGGGCATCA	0.587													11	14	---	---	---	---						.
SASH3	54440	broad.mit.edu	37	X	128922006	128922006	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:128922006delC	uc011mun.1	+	2	295	c.113delC	c.(112-114)TCCfs	p.S38fs	SASH3_uc004euu.2_Frame_Shift_Del_p.S38fs|SASH3_uc011muo.1_5'UTR	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	38										ovary(2)|pancreas(1)	3						AAACCCAGCTCCCCCGTGGTG	0.567													25	22	---	---	---	---						.
PRRG3	79057	broad.mit.edu	37	X	150869296	150869297	+	Frame_Shift_Ins	INS	-	G	G	rs139807152	byFrequency	TCGA-BR-8360-01A-11D-2340-08	TCGA-BR-8360-10A-01D-2340-08									Somatic	Phase_I	Capture				Illumina GAIIx	fdcd47c0-be85-4fef-81fa-0b9a2f02b76b	c4253b55-6a17-4168-9ec4-49773cb08f7f	g.chrX:150869296_150869297insG	uc004few.1	+	4	877_878	c.487_488insG	c.(487-489)CGGfs	p.R163fs		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	163	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGGGCCCAGTCGGGGGGGCAGG	0.673													14	13	---	---	---	---						.
