Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
RHBG	57127	broad.mit.edu	37	1	156351656	156351656	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:156351656G>A	uc010pho.1	+	6	938	c.900G>A	c.(898-900)ATG>ATA	p.M300I	RHBG_uc010phm.1_Missense_Mutation_p.M138I|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.M231I|RHBG_uc009wrz.2_Missense_Mutation_p.M268I|RHBG_uc001for.2_Missense_Mutation_p.M270I	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	300	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					CAAGTGAAATGATGCTGACAC	0.557													13	65					0	0	0.001368	0	0	
FCRL6	343413	broad.mit.edu	37	1	159779344	159779344	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:159779344G>T	uc001fud.3	+	5	799	c.757G>T	c.(757-759)GCT>TCT	p.A253S	FCRL6_uc001fuc.2_Missense_Mutation_p.A260S|FCRL6_uc009wsz.1_Missense_Mutation_p.A158S|FCRL6_uc009wta.2_Missense_Mutation_p.A253S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	253	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					GAACCACTCAGCTCCCTGTGG	0.567													11	55					1.61879e-10	1.77192e-10	0.001368	1	0	
FCGR2C	9103	broad.mit.edu	37	1	161559466	161559466	+	Missense_Mutation	SNP	C	A	A	rs111603147		TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:161559466C>A	uc001gav.2	+	4	347	c.248C>A	c.(247-249)CCG>CAG	p.P83Q	FCGR2C_uc009wuj.2_RNA|FCGR2C_uc009wuk.2_RNA	NM_201563	NP_963857			Fc fragment of IgG, low affinity IIc, receptor												0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GACTCCATTCCGTGGTTCCAC	0.577													28	44					2.20262e-25	2.54875e-25	0.002836	1	0	
FAM5C	339479	broad.mit.edu	37	1	190067205	190067205	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:190067205C>T	uc001gse.1	-	8	2476	c.2244G>A	c.(2242-2244)GCG>GCA	p.A748A	FAM5C_uc010pot.1_Silent_p.A646A	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	748						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGGCATTAAACGCCTGCAGAG	0.423													27	28					0	0	0.005443	0	0	
RAB3GAP2	25782	broad.mit.edu	37	1	220366601	220366601	+	Silent	SNP	A	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:220366601A>G	uc010puk.1	-	13	1415	c.1251T>C	c.(1249-1251)ATT>ATC	p.I417I	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_5'UTR	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	417					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		TGCGTATTGCAATTCCTCTAG	0.388													14	45					0	0	0.001855	0	0	
PRSS38	339501	broad.mit.edu	37	1	228003908	228003908	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:228003908T>C	uc001hrh.2	+	2	266	c.266T>C	c.(265-267)ATC>ACC	p.I89T		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	89	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						GGCGGCTCCATCCTCAATGAG	0.667													27	109					0	0	0.009535	0	0	
KIF26B	55083	broad.mit.edu	37	1	245849034	245849034	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr1:245849034G>T	uc001ibf.1	+	12	3189	c.2749G>T	c.(2749-2751)GAA>TAA	p.E917*	KIF26B_uc001ibg.1_Nonsense_Mutation_p.E535*|KIF26B_uc001ibh.1_Nonsense_Mutation_p.E159*	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	917					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			CGGCAAGTCAGAAAGGGACTG	0.642													22	9					1.50039e-11	1.65349e-11	0.001882	1	0	
ANXA2P3	305	broad.mit.edu	37	10	66585513	66585513	+	RNA	SNP	A	G	G	rs7898508	by1000genomes	TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr10:66585513A>G	uc009xpm.1	+	1		c.229A>G				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						ATTTTGACCAACAGCAGGAAT	0.488													3	20					0	0	0.009096	0	0	
LGI1	9211	broad.mit.edu	37	10	95557278	95557278	+	Silent	SNP	G	A	A	rs148804268		TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr10:95557278G>A	uc001kjc.3	+	8	1728	c.1392G>A	c.(1390-1392)TCG>TCA	p.S464S	LGI1_uc010qnv.1_Silent_p.S416S|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	464	EAR 6.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				GAGGCTCCTCGTTCCAGGATA	0.438													38	57					0	0	0.005524	0	0	
PKP3	11187	broad.mit.edu	37	11	397169	397169	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:397169C>G	uc001lpc.2	+	3	744	c.668C>G	c.(667-669)TCC>TGC	p.S223C		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	223					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGCTCCAGCTCCAGCCGGGCA	0.711													4	34					0	0	0.009096	0	0	
OR52E4	390081	broad.mit.edu	37	11	5906083	5906083	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:5906083C>T	uc010qzs.1	+	1	561	c.561C>T	c.(559-561)GCC>GCT	p.A187A	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGGTCTGGCCGGGTTGGCCT	0.443													145	57					0	0	0.003610	0	0	
CTR9	9646	broad.mit.edu	37	11	10785357	10785357	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:10785357C>T	uc001mja.2	+	9	1274	c.1125C>T	c.(1123-1125)TAC>TAT	p.Y375Y		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	375					histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		CTAATAATTACGAAACTATGA	0.348													79	27					0	0	0.003610	0	0	
NAV2	89797	broad.mit.edu	37	11	20122686	20122686	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:20122686G>A	uc001mpr.3	+	32	6755	c.6394G>A	c.(6394-6396)GCC>ACC	p.A2132T	NAV2_uc001mpp.2_Missense_Mutation_p.A2065T|NAV2_uc009yhx.2_Missense_Mutation_p.A1193T|NAV2_uc009yhz.2_Missense_Mutation_p.A774T|NAV2_uc001mpu.2_Missense_Mutation_p.A567T	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	2188						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CGGGGTTATCGCCACCTTTAA	0.522													21	82					0	0	0.001882	0	0	
OR5AS1	219447	broad.mit.edu	37	11	55798075	55798075	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:55798075T>G	uc010riw.1	+	1	181	c.181T>G	c.(181-183)TAT>GAT	p.Y61D		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	61	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					TCCCATGTATTATTTTCTTAG	0.343													10	84					0	0	0.008291	0	0	
OR8I2	120586	broad.mit.edu	37	11	55861192	55861192	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:55861192T>C	uc010rix.1	+	1	409	c.409T>C	c.(409-411)TCC>CCC	p.S137P		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					AGTAGTCATGTCCCAAAAAGT	0.448													21	170					0	0	0.010504	0	0	
OR5R1	219479	broad.mit.edu	37	11	56185107	56185107	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:56185107G>A	uc010rji.1	-	1	602	c.602C>T	c.(601-603)GCC>GTC	p.A201V		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GCCAGCAAAGGCAAATATCAG	0.438													9	110					0	0	0.006214	0	0	
CTNND1	1500	broad.mit.edu	37	11	57581797	57581797	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:57581797C>T	uc001nmc.3	+	18	3224	c.2653C>T	c.(2653-2655)CGG>TGG	p.R885W	CTNND1_uc001nlh.1_Missense_Mutation_p.R885W|CTNND1_uc001nlu.3_Missense_Mutation_p.R778W|CTNND1_uc001nlt.3_Missense_Mutation_p.R778W|CTNND1_uc001nls.3_Intron|CTNND1_uc001nlw.3_Missense_Mutation_p.R778W|CTNND1_uc001nmf.3_Missense_Mutation_p.R885W|CTNND1_uc001nmd.3_Missense_Mutation_p.R831W|CTNND1_uc001nlk.3_Missense_Mutation_p.R831W|CTNND1_uc001nme.3_Missense_Mutation_p.R879W|CTNND1_uc001nll.3_Missense_Mutation_p.R825W|CTNND1_uc001nmg.3_Missense_Mutation_p.R825W|CTNND1_uc001nlj.3_Missense_Mutation_p.R825W|CTNND1_uc001nlr.3_Missense_Mutation_p.R825W|CTNND1_uc001nlp.3_Intron|CTNND1_uc001nlx.3_Missense_Mutation_p.R562W|CTNND1_uc001nlz.3_Missense_Mutation_p.R562W|CTNND1_uc009ymn.2_Missense_Mutation_p.R556W|CTNND1_uc001nlm.3_Missense_Mutation_p.R879W|CTNND1_uc001nly.3_Missense_Mutation_p.R556W|CTNND1_uc001nmb.3_Missense_Mutation_p.R556W|CTNND1_uc001nma.3_Intron|CTNND1_uc001nmi.3_Missense_Mutation_p.R784W|CTNND1_uc001nmh.3_Missense_Mutation_p.R879W|CTNND1_uc001nlq.3_Missense_Mutation_p.R784W|CTNND1_uc001nln.3_Missense_Mutation_p.R879W|CTNND1_uc001nli.3_Intron|CTNND1_uc001nlo.3_Missense_Mutation_p.R778W|CTNND1_uc001nlv.3_Missense_Mutation_p.R778W	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	885					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				GAAACCTGATCGGGAAGAAAT	0.373													3	18					0	0	0.009096	0	0	
ANO1	55107	broad.mit.edu	37	11	69934066	69934066	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:69934066C>T	uc001opj.2	+	2	622	c.317C>T	c.(316-318)GCG>GTG	p.A106V	ANO1_uc001opk.1_Missense_Mutation_p.A78V|ANO1_uc001opl.1_RNA	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	106	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						GGCAAGGGGGCGTCGCTGGAT	0.706													6	3					0	0	0.001168	0	0	
ODZ4	26011	broad.mit.edu	37	11	78380911	78380911	+	Missense_Mutation	SNP	C	T	T	rs144957611	by1000genomes	TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:78380911C>T	uc001ozl.3	-	32	6942	c.6479G>A	c.(6478-6480)CGC>CAC	p.R2160H	ODZ4_uc001ozk.3_Missense_Mutation_p.R385H|ODZ4_uc009yvb.1_Missense_Mutation_p.R744H	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2160	YD 16.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CATGAGCGAGCGGAAGATCTC	0.488													21	13					0	0	0.008871	0	0	
FZD4	8322	broad.mit.edu	37	11	86663299	86663299	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:86663299C>A	uc001pce.2	-	2	805	c.499G>T	c.(499-501)GTG>TTG	p.V167L	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	167	Extracellular (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				GGTAAGGGCACCTCTTCATCA	0.522													24	107					5.35047e-06	5.70248e-06	0.003330	1	0	
APOA4	337	broad.mit.edu	37	11	116691970	116691970	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:116691970C>T	uc001pps.1	-	3	908	c.804G>A	c.(802-804)GCG>GCA	p.A268A		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		CGGCCAAGGGCGCCAGCCTCT	0.662													19	64					0	0	0.007413	0	0	
HINFP	25988	broad.mit.edu	37	11	119002253	119002253	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:119002253C>T	uc001pvp.2	+	5	609	c.420C>T	c.(418-420)TTC>TTT	p.F140F	HINFP_uc001pvq.2_Silent_p.F140F|HINFP_uc001pvr.2_5'UTR	NM_015517	NP_056332	Q9BQA5	HINFP_HUMAN	MBD2 (methyl-CpG-binding protein)-interacting	140	C2H2-type 2.				DNA damage checkpoint|DNA repair|establishment of protein localization|in utero embryonic development|myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	enzyme binding|histone binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						AGAATTCCTTCGACAATCCTG	0.542													9	73					0	0	0.004482	0	0	
PANX3	116337	broad.mit.edu	37	11	124487353	124487353	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:124487353G>A	uc001qah.2	+	3	508	c.508G>A	c.(508-510)GAC>AAC	p.D170N		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	170	Cytoplasmic (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		GAAGAGTTCCGACCCCTATGT	0.458													49	30					0	0	0.003610	0	0	
CACNA2D4	93589	broad.mit.edu	37	12	1992145	1992145	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:1992145G>A	uc001qjp.2	-	13	1604	c.1373C>T	c.(1372-1374)ACG>ATG	p.T458M	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.T346M	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	458	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		GTCCGCCAGCGTTGAGATCTG	0.642													9	5					0	0	0.006214	0	0	
KCNA6	3742	broad.mit.edu	37	12	4919260	4919260	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:4919260C>T	uc001qng.2	+	1	919	c.53C>T	c.(52-54)CCG>CTG	p.P18L		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	18						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GTCCGTGGGCCGGAGGGAGAG	0.706										HNSCC(72;0.22)			10	16					0	0	0.008291	0	0	
PZP	5858	broad.mit.edu	37	12	9333627	9333627	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:9333627G>T	uc001qvl.2	-	15	1820	c.1791C>A	c.(1789-1791)GAC>GAA	p.D597E	PZP_uc009zgl.2_Missense_Mutation_p.D466E	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						GCACACTTTGGTCCACAGCAC	0.587													9	32					1.12685e-05	1.18539e-05	0.004482	1	0	
OVCH1	341350	broad.mit.edu	37	12	29649590	29649590	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:29649590G>A	uc001rix.1	-	2	82	c.82C>T	c.(82-84)CGC>TGC	p.R28C		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	28					proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					TTGACCATGCGAATTCCACAC	0.428													11	156					0	0	0.001368	0	0	
UBE3B	89910	broad.mit.edu	37	12	109921443	109921443	+	Silent	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:109921443G>A	uc001top.2	+	3	690	c.87G>A	c.(85-87)CGG>CGA	p.R29R	UBE3B_uc001toq.2_Silent_p.R29R|UBE3B_uc001tol.1_Silent_p.R29R|UBE3B_uc001tom.2_Silent_p.R29R|UBE3B_uc001ton.2_Silent_p.R29R|UBE3B_uc001too.1_RNA|UBE3B_uc009zvj.1_Silent_p.R29R|UBE3B_uc001tor.2_Silent_p.R29R	NM_130466	NP_569733	Q7Z3V4	UBE3B_HUMAN	ubiquitin protein ligase E3B	29	IQ.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	ubiquitin-protein ligase activity			ovary(2)|lung(2)	4						AGAAGGAACGGGAGCGGGCAG	0.542													87	57					0	0	0.003610	0	0	
C12orf51	283450	broad.mit.edu	37	12	112667572	112667572	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:112667572C>T	uc009zwc.2	-	34	5201	c.5183G>A	c.(5182-5184)CGC>CAC	p.R1728H	C12orf51_uc001ttr.1_5'Flank	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AACGGCCTGGCGTGCAATTCT	0.493													32	139					0	0	0.002096	0	0	
GOLGA3	2802	broad.mit.edu	37	12	133353343	133353343	+	Splice_Site	SNP	C	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr12:133353343C>G	uc001ukz.1	-	21	4415	c.3856_splice	c.e21-1	p.M1286_splice	GOLGA3_uc001ula.1_Splice_Site_p.M1286_splice	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3						intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GATTTTCCATCTAAAGAGGGG	0.438													58	40					0	0	0.003610	0	0	
DCLK1	9201	broad.mit.edu	37	13	36686248	36686248	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr13:36686248G>A	uc001uvf.2	-	3	714	c.481C>T	c.(481-483)CGG>TGG	p.R161W		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	161					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GACACTGCCCGAGAAGCCGAG	0.522													24	180					0	0	0.003330	0	0	
DLEU7	220107	broad.mit.edu	37	13	51417425	51417425	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr13:51417425C>T	uc001vez.2	-	1	461	c.358G>A	c.(358-360)GCG>ACG	p.A120T	DLEU7_uc001vex.2_Missense_Mutation_p.A120T|uc001vey.2_Intron	NM_198989	NP_945340	Q6UYE1	LEU7_HUMAN	deleted in lymphocytic leukemia, 7	120											0		Acute lymphoblastic leukemia(7;1.03e-07)|Lung NSC(96;0.000818)|Breast(56;0.00122)|Prostate(109;0.0047)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;3.25e-08)		CGGGCCAGCGCGCTGCGCATC	0.706													4	17					0	0	0.000602	0	0	
THSD1P1	374500	broad.mit.edu	37	13	52864001	52864001	+	RNA	SNP	A	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr13:52864001A>G	uc001vgm.1	-	2		c.157T>C								Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						GAAAAAATAAAGCAATAGCTA	0.303													3	38					0	0	0.009096	0	0	
PCDH9	5101	broad.mit.edu	37	13	67799641	67799641	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr13:67799641C>T	uc001vik.2	-	2	3624	c.2932G>A	c.(2932-2934)GAC>AAC	p.D978N	PCDH9_uc001vil.2_Missense_Mutation_p.D978N|PCDH9_uc010thl.1_Missense_Mutation_p.D978N|PCDH9_uc001vin.3_Missense_Mutation_p.D978N	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	978	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GAAAGGGTGTCACAACCCCCA	0.498													119	69					0	0	0.003610	0	0	
RPL10L	140801	broad.mit.edu	37	14	47120719	47120719	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr14:47120719T>A	uc001wwg.2	-	1	310	c.221A>T	c.(220-222)AAA>ATA	p.K74I		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	74					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						CACCATGTATTTGTTGGCACA	0.522													16	50					0	0	0.004990	0	0	
ADAM21	8747	broad.mit.edu	37	14	70925359	70925359	+	Silent	SNP	T	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr14:70925359T>A	uc001xmd.2	+	1	1143	c.1143T>A	c.(1141-1143)GCT>GCA	p.A381A		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	381	Peptidase M12B.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GCAGTTACGCTGATTTTATGA	0.423													4	76					0	0	0.009096	0	0	
KIAA0284	283638	broad.mit.edu	37	14	105361169	105361169	+	Silent	SNP	A	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr14:105361169A>C	uc010axb.2	+	19	4763	c.4539A>C	c.(4537-4539)TCA>TCC	p.S1513S	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Silent_p.S1443S|KIAA0284_uc001yps.2_Silent_p.S1454S|KIAA0284_uc001ypt.2_Silent_p.S181S	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1548						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GCCCACCCTCACCCGCCTCAG	0.711													7	10					0	0	0.003080	0	0	
SPRED1	161742	broad.mit.edu	37	15	38632001	38632001	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr15:38632001G>A	uc001zka.3	+	5	822	c.487G>A	c.(487-489)GTT>ATT	p.V163I		NM_152594	NP_689807	Q7Z699	SPRE1_HUMAN	sprouty-related protein 1 with EVH-1 domain	163					inactivation of MAPK activity|multicellular organismal development	caveola|nucleus	stem cell factor receptor binding			ovary(2)|lung(2)|skin(1)	5		all_cancers(109;4.88e-13)|all_epithelial(112;1.83e-11)|Lung NSC(122;2.21e-09)|all_lung(180;4.64e-08)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(113;2.41e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0244)		AGAGACAGTTGTTACCAGTGA	0.423									Legius_syndrome				39	29					0	0	0.005524	0	0	
SPTBN5	51332	broad.mit.edu	37	15	42154034	42154034	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr15:42154034C>T	uc001zos.2	-	45	7864	c.7531G>A	c.(7531-7533)GAC>AAC	p.D2511N		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2546	Spectrin 22.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TGGCGAATGTCGGAGCTGAAG	0.637													9	9					0	0	0.004482	0	0	
ERCC4	2072	broad.mit.edu	37	16	14042001	14042001	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr16:14042001G>C	uc002dce.2	+	11	2557	c.2548G>C	c.(2548-2550)GAC>CAC	p.D850H	ERCC4_uc010uyz.1_Missense_Mutation_p.D400H	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	850	Interaction with EME1 and ERCC1.				double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						TGGTCCCCAAGACTTCTTGTT	0.498			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				28	32					0	0	0.008361	0	0	
COG7	91949	broad.mit.edu	37	16	23415150	23415150	+	Silent	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr16:23415150T>C	uc002dlo.2	-	13	1856	c.1668A>G	c.(1666-1668)AAA>AAG	p.K556K		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	556					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		TGCTTGACCCTTTTTCCTAAG	0.507													3	40					0	0	0.004672	0	0	
TAOK2	9344	broad.mit.edu	37	16	29997928	29997928	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr16:29997928G>T	uc002dva.1	+	16	3118	c.2335G>T	c.(2335-2337)GGC>TGC	p.G779C	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.G786C|TAOK2_uc002dvd.1_Missense_Mutation_p.G606C	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	779					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CTGCTCACCTGGCCAGGAGGC	0.627													47	54					1.23103e-26	1.43472e-26	0.003214	1	0	
GLG1	2734	broad.mit.edu	37	16	74530507	74530507	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr16:74530507C>A	uc002fcy.3	-	5	860	c.810G>T	c.(808-810)TTG>TTT	p.L270F	GLG1_uc002fcx.2_Missense_Mutation_p.L270F|GLG1_uc002fcw.3_Missense_Mutation_p.L259F|GLG1_uc002fcz.3_Intron	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	270	Extracellular (Potential).|Cys-rich GLG1 3.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						GGCCTTTCTCCAAGCATGATA	0.403													17	180					5.35267e-07	5.78088e-07	0.007413	1	0	
FAM92B	339145	broad.mit.edu	37	16	85141652	85141652	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr16:85141652C>A	uc010vok.1	-	3	465	c.309G>T	c.(307-309)CAG>CAT	p.Q103H		NM_198491	NP_940893	Q6ZTR7	FA92B_HUMAN	hypothetical protein LOC339145	103										central_nervous_system(1)	1						TCTGCTTGATCTGTGCCCCGT	0.647													58	44					4.96213e-28	5.82511e-28	0.003610	1	0	
NEURL4	84461	broad.mit.edu	37	17	7230973	7230973	+	Silent	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr17:7230973G>A	uc002gga.1	-	2	520	c.513C>T	c.(511-513)CTC>CTT	p.L171L	NEURL4_uc002ggb.1_Silent_p.L171L|NEURL4_uc002ggc.1_5'Flank	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	171	NHR 1.						protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						CATTCACCCAGAGCCGAAGCT	0.642													24	77					0	0	0.002299	0	0	
TP53	7157	broad.mit.edu	37	17	7579406	7579406	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr17:7579406G>C	uc002gim.2	-	4	475	c.281C>G	c.(280-282)TCA>TGA	p.S94*	TP53_uc002gig.1_Nonsense_Mutation_p.S94*|TP53_uc002gih.2_Nonsense_Mutation_p.S94*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Nonsense_Mutation_p.S94*|TP53_uc010cni.1_Nonsense_Mutation_p.S94*|TP53_uc002gij.2_Nonsense_Mutation_p.S94*|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Nonsense_Mutation_p.S55*|TP53_uc010cnk.1_Nonsense_Mutation_p.S109*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	94	Interaction with WWOX.		S -> L (in sporadic cancers; somatic mutation).|S -> T (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.S94*(3)|p.G59fs*23(3)|p.S94T(2)|p.V73fs*9(1)|p.S94fs*29(1)|p.S94fs*54(1)|p.A88fs*52(1)|p.W91fs*13(1)|p.P13fs*18(1)|p.S33fs*23(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GACAGAAGATGACAGGGGCCA	0.627		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			46	24					0	0	0.002522	0	0	
FLJ36000	284124	broad.mit.edu	37	17	21904204	21904204	+	RNA	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr17:21904204G>T	uc002gza.2	+	1		c.143G>T				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ctgccaggacggtgttcgggt	0													3	26					0.004672	0.00485169	0.004672	1	0	
SMCHD1	23347	broad.mit.edu	37	18	2760681	2760681	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr18:2760681T>C	uc002klm.3	+	35	4567	c.4378T>C	c.(4378-4380)TAT>CAT	p.Y1460H	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1460					chromosome organization		ATP binding				0						AGTGGGGACATATTGTATCCA	0.299													11	29					0	0	0.001368	0	0	
POTEC	388468	broad.mit.edu	37	18	14542978	14542978	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr18:14542978C>T	uc010dln.2	-	1	622	c.168G>A	c.(166-168)ATG>ATA	p.M56I	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	56										skin(3)	3						TGCTCCTGAGCATCTTCATAA	0.587													64	646					0	0	0.003610	0	0	
NETO1	81832	broad.mit.edu	37	18	70526277	70526277	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr18:70526277C>G	uc002lkw.2	-	4	537	c.253G>C	c.(253-255)GAT>CAT	p.D85H	NETO1_uc002lkx.1_Missense_Mutation_p.D84H|NETO1_uc002lky.1_Missense_Mutation_p.D85H|NETO1_uc002lkz.2_Missense_Mutation_p.D84H	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	85	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TACTTTTCATCAAAGTAAAGT	0.383													39	47					0	0	0.005524	0	0	
SCAF1	58506	broad.mit.edu	37	19	50156862	50156862	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr19:50156862C>T	uc002poq.2	+	7	3340	c.3216C>T	c.(3214-3216)GAC>GAT	p.D1072D		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	1072					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GGGCGGAGGACGGGCCAGCTT	0.711													6	1					0	0	0.001984	0	0	
BCL2L12	83596	broad.mit.edu	37	19	50172124	50172124	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr19:50172124C>T	uc002ppa.2	+	4	1201	c.519C>T	c.(517-519)GAC>GAT	p.D173D	IRF3_uc002pou.2_5'Flank|IRF3_uc002pov.2_5'Flank|IRF3_uc002pow.2_5'Flank|BCL2L12_uc002ppb.2_Silent_p.D172D	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	173					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CTACTCCAGACTTCTATGCTT	0.557													14	81					0	0	0.004007	0	0	
U2AF2	11338	broad.mit.edu	37	19	56172483	56172483	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr19:56172483C>T	uc002qlu.2	+	5	1469	c.414C>T	c.(412-414)CCC>CCT	p.P138P	U2AF2_uc002qlt.2_Silent_p.P138P	NM_007279	NP_009210	P26368	U2AF2_HUMAN	U2 (RNU2) small nuclear RNA auxiliary factor 2	138					mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	nucleoplasm|spliceosomal complex	enzyme binding|nucleotide binding|RNA binding			ovary(1)	1		Colorectal(82;0.00244)|Ovarian(87;0.133)	BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		CGCCGGTGCCCGTGGTCGGGA	0.537													31	44					0	0	0.002096	0	0	
DUXA	503835	broad.mit.edu	37	19	57666682	57666682	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr19:57666682G>A	uc002qoa.1	-	5	542	c.497C>T	c.(496-498)GCG>GTG	p.A166V		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	166						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		TTCTAAGGACGCCACAGGTTC	0.428													36	56					0	0	0.006230	0	0	
SMC6	79677	broad.mit.edu	37	2	17847705	17847705	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:17847705A>C	uc002rco.2	-	27	3439	c.3143T>G	c.(3142-3144)CTC>CGC	p.L1048R	SMC6_uc010exo.2_Missense_Mutation_p.L1048R|SMC6_uc002rcn.2_Missense_Mutation_p.L1048R	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	1048					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTGAGGTGTGAGCAAGATAAA	0.318													10	16					0	0	0.000978	0	0	
TTC27	55622	broad.mit.edu	37	2	33007732	33007732	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:33007732C>T	uc002rom.2	+	15	2050	c.1819C>T	c.(1819-1821)CGA>TGA	p.R607*	TTC27_uc010ymx.1_Nonsense_Mutation_p.R557*|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	607	TPR 5.|HAT 2.						protein binding			central_nervous_system(1)	1						TTCCTATATCCGATTAAAACA	0.289													6	46					0	0	0.001168	0	0	
SLC8A1	6546	broad.mit.edu	37	2	40366566	40366566	+	Silent	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:40366566G>A	uc002rrx.2	-	9	2544	c.2520C>T	c.(2518-2520)TTC>TTT	p.F840F	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Silent_p.F835F|SLC8A1_uc002rrz.2_Silent_p.F827F|SLC8A1_uc002rsa.2_Silent_p.F804F|SLC8A1_uc002rsd.3_Silent_p.F804F	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	840	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAAGTGCGACGAACACGACTG	0.463													17	27					0	0	0.008871	0	0	
ALMS1	7840	broad.mit.edu	37	2	73677419	73677419	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:73677419T>A	uc002sje.1	+	10	3879	c.3768T>A	c.(3766-3768)GAT>GAA	p.D1256E	ALMS1_uc002sjf.1_Missense_Mutation_p.D1212E|ALMS1_uc002sjg.2_Missense_Mutation_p.D642E|ALMS1_uc002sjh.1_Missense_Mutation_p.D642E	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1254	16.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCTTGCCAGATAATCATCCAA	0.473													19	154					0	0	0.007413	0	0	
AFF3	3899	broad.mit.edu	37	2	100210469	100210469	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:100210469C>T	uc002tag.2	-	14	1890	c.1654G>A	c.(1654-1656)GCG>ACG	p.A552T	AFF3_uc002taf.2_Missense_Mutation_p.A577T|AFF3_uc010fiq.1_Missense_Mutation_p.A552T|AFF3_uc010yvr.1_Missense_Mutation_p.A705T|AFF3_uc002tah.1_Missense_Mutation_p.A577T	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	552					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GCCACGGCCGCGGGCGGGGAC	0.701													50	59					0	0	0.003610	0	0	
EDAR	10913	broad.mit.edu	37	2	109513576	109513576	+	Silent	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:109513576G>A	uc002teq.3	-	12	1565	c.1134C>T	c.(1132-1134)GCC>GCT	p.A378A	EDAR_uc010fjn.2_Silent_p.A410A|EDAR_uc010yws.1_Silent_p.A410A	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	378	Death.|Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						CGAAGCTCTCGGCGAGGTGGC	0.572													14	48					0	0	0.002450	0	0	
FBLN7	129804	broad.mit.edu	37	2	112942907	112942907	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:112942907C>T	uc002tho.1	+	7	1209	c.938C>T	c.(937-939)ACG>ATG	p.T313M	FBLN7_uc002thn.2_Missense_Mutation_p.T313M|FBLN7_uc010fki.1_Missense_Mutation_p.T267M|FBLN7_uc010fkj.1_Missense_Mutation_p.T179M	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	313	EGF-like 3; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						TACGTGAAGACGTCTCCATTG	0.602													25	46					0	0	0.002096	0	0	
LRP1B	53353	broad.mit.edu	37	2	141031994	141031994	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:141031994T>C	uc002tvj.1	-	85	14113	c.13141A>G	c.(13141-13143)AAC>GAC	p.N4381D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4381	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCCACTTACTTGCAAAATATA	0.368										TSP Lung(27;0.18)			28	36					0	0	0.002096	0	0	
LRP1B	53353	broad.mit.edu	37	2	141072650	141072650	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:141072650G>C	uc002tvj.1	-	83	13631	c.12659C>G	c.(12658-12660)ACT>AGT	p.T4220S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4220	Extracellular (Potential).|EGF-like 10.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTTTCACAAGTTAACTTACA	0.313										TSP Lung(27;0.18)			18	36					0	0	0.006122	0	0	
LRP1B	53353	broad.mit.edu	37	2	141473650	141473650	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:141473650T>A	uc002tvj.1	-	37	6887	c.5915A>T	c.(5914-5916)CAT>CTT	p.H1972L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1972	Extracellular (Potential).|LDL-receptor class B 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTTGAAACCATGATCTGTCCA	0.328										TSP Lung(27;0.18)			10	99					0	0	0.008291	0	0	
NEB	4703	broad.mit.edu	37	2	152425193	152425193	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:152425193G>A	uc010fnx.2	-	83	12661	c.12470C>T	c.(12469-12471)ACG>ATG	p.T4157M	NEB_uc002txr.2_Missense_Mutation_p.T580M	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4157	Nebulin 114.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATCCACAGGCGTAAAGTTGAG	0.373													3	18					0	0	0.004672	0	0	
EVX2	344191	broad.mit.edu	37	2	176946938	176946938	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:176946938C>T	uc010zeu.1	-	2	853	c.667G>A	c.(667-669)GCG>ACG	p.A223T		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	223	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		TTGAGTGCCGCGGCCAGCTCG	0.627													7	34					0	0	0.003080	0	0	
TTN	7273	broad.mit.edu	37	2	179464329	179464329	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:179464329C>A	uc010zfg.1	-	238	48819	c.48595G>T	c.(48595-48597)GTA>TTA	p.V16199L	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V9894L|TTN_uc010zfi.1_Missense_Mutation_p.V9827L|TTN_uc010zfj.1_Missense_Mutation_p.V9702L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17126							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGATTATTTACAGCTGTGATG	0.398													115	156					2.91419e-48	3.47131e-48	0.003610	1	0	
TTN	7273	broad.mit.edu	37	2	179647717	179647717	+	Silent	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:179647717C>T	uc010zfg.1	-	18	3140	c.2916G>A	c.(2914-2916)CCG>CCA	p.P972P	TTN_uc010zfh.1_Silent_p.P926P|TTN_uc010zfi.1_Silent_p.P926P|TTN_uc010zfj.1_Silent_p.P926P|TTN_uc002unb.2_Silent_p.P972P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	972							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTCACTGTCGGGGATGGGT	0.433													37	43					0	0	0.006230	0	0	
SF3B1	23451	broad.mit.edu	37	2	198257729	198257729	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:198257729A>C	uc002uue.2	-	24	3771	c.3723T>G	c.(3721-3723)ATT>ATG	p.I1241M		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	1241					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TACATGGTCCAATAGCAACTC	0.313													14	66					0	0	0.004007	0	0	
CYP20A1	57404	broad.mit.edu	37	2	204111644	204111644	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:204111644T>G	uc002uzv.3	+	3	911	c.289T>G	c.(289-291)TCG>GCG	p.S97A	CYP20A1_uc002uzx.3_Intron|CYP20A1_uc010zif.1_Missense_Mutation_p.S97A|CYP20A1_uc002uzy.3_Intron|CYP20A1_uc002uzw.3_RNA	NM_177538	NP_803882	Q6UW02	CP20A_HUMAN	cytochrome P450, family 20, subfamily A,	97						integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0						CAATAAGACATGTAAGTTTAA	0.318													60	120					0	0	0.003610	0	0	
FASTKD2	22868	broad.mit.edu	37	2	207655332	207655332	+	Silent	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:207655332T>C	uc002vbu.2	+	11	2345	c.1935T>C	c.(1933-1935)TGT>TGC	p.C645C	FASTKD2_uc002vbv.2_Silent_p.C645C|FASTKD2_uc002vbx.2_Silent_p.C645C|FASTKD2_uc002vbw.1_3'UTR	NM_001136193	NP_001129665	Q9NYY8	FAKD2_HUMAN	FAST kinase domains 2	645	RAP.				apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|skin(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0718)|Epithelial(149;0.119)|Lung(261;0.138)		CTGCTTATTGTTTGGGTTCAA	0.363													59	108					0	0	0.003610	0	0	
SPP2	6694	broad.mit.edu	37	2	234959729	234959729	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:234959729C>T	uc002vvk.1	+	2	285	c.200C>T	c.(199-201)TCA>TTA	p.S67L	SPP2_uc010fyl.1_Intron	NM_006944	NP_008875	Q13103	SPP24_HUMAN	secreted phosphoprotein 2, 24kDa precursor	67					bone remodeling|skeletal system development	extracellular region	endopeptidase inhibitor activity				0		Breast(86;0.0109)|Renal(207;0.019)|all_lung(227;0.13)|all_hematologic(139;0.182)		Epithelial(121;5.73e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000166)|Lung(119;0.00539)|LUSC - Lung squamous cell carcinoma(224;0.00846)		TTCAGAAGCTCATTAAAAAGA	0.418													28	35					0	0	0.005443	0	0	
C20orf26	26074	broad.mit.edu	37	20	20243679	20243679	+	Missense_Mutation	SNP	C	A	A	rs145071038	by1000genomes	TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr20:20243679C>A	uc002wru.2	+	21	2484	c.2408C>A	c.(2407-2409)ACG>AAG	p.T803K	C20orf26_uc010zse.1_Missense_Mutation_p.T783K|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Missense_Mutation_p.T159K	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	803										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CGGCGGTACACGGGGAAAGTT	0.478													34	140					3.62531e-18	4.10699e-18	0.004289	1	0	
CD93	22918	broad.mit.edu	37	20	23064978	23064978	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr20:23064978C>T	uc002wsv.2	-	1	2000	c.1852G>A	c.(1852-1854)GAG>AAG	p.E618K		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	618	Cytoplasmic (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GGCTTCTTCTCCTTCTTCTCC	0.597													87	167					0	0	0.003610	0	0	
FAM182B	728882	broad.mit.edu	37	20	25848617	25848617	+	RNA	SNP	A	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr20:25848617A>G	uc002wvd.1	-	1		c.170T>C								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggcaggcctgaggctgggatg	0													2	6					0	0	0.004672	0	0	
TP53TG5	27296	broad.mit.edu	37	20	44003774	44003774	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr20:44003774C>T	uc002xny.2	-	4	754	c.673G>A	c.(673-675)GTG>ATG	p.V225M	SYS1_uc002xnw.1_3'UTR|SYS1-DBNDD2_uc002xnx.2_Intron	NM_014477	NP_055292	Q9Y2B4	T53G5_HUMAN	TP53-target gene 5 protein	225					intracellular signal transduction|negative regulation of cell growth	cytoplasm|nucleus				central_nervous_system(1)	1						CTGCACATCACCCTGGGCGCC	0.597													8	109					0	0	0.004482	0	0	
PARD6B	84612	broad.mit.edu	37	20	49366625	49366625	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr20:49366625G>A	uc002xvo.2	+	3	962	c.719G>A	c.(718-720)CGT>CAT	p.R240H		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	240	PDZ.|Interaction with PARD3 and CDC42 (By similarity).				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						GCAAATAGCCGTAACCTCATC	0.423													48	152					0	0	0.002852	0	0	
RAE1	8480	broad.mit.edu	37	20	55942112	55942112	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr20:55942112G>A	uc002xyg.2	+	7	852	c.511G>A	c.(511-513)GAA>AAA	p.E171K	RAE1_uc010gis.1_Missense_Mutation_p.E124K|RAE1_uc010git.1_Missense_Mutation_p.E171K|RAE1_uc002xyh.2_Missense_Mutation_p.E171K|RAE1_uc002xyi.2_Missense_Mutation_p.E171K	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	171	WD 3.				carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			GCAACTCCCTGAAAGGTGTTA	0.378													33	156					0	0	0.006230	0	0	
NCAM2	4685	broad.mit.edu	37	21	22881188	22881188	+	Silent	SNP	T	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr21:22881188T>A	uc002yld.1	+	16	2343	c.2094T>A	c.(2092-2094)GGT>GGA	p.G698G	NCAM2_uc011acb.1_Silent_p.G556G	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	698	Helical; (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TGTTTAATGGTCTTGGGCTTG	0.323													7	15					0	0	0.003080	0	0	
RNF160	26046	broad.mit.edu	37	21	30357128	30357128	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr21:30357128G>C	uc002ymr.2	-	4	612	c.599C>G	c.(598-600)GCT>GGT	p.A200G	RNF160_uc010gll.1_RNA	NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	154							ligase activity|zinc ion binding				0						ATCACACTGAGCCATTAGCCA	0.413													25	46					0	0	0.004656	0	0	
CCT8L2	150160	broad.mit.edu	37	22	17073169	17073169	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr22:17073169C>T	uc002zlp.1	-	1	532	c.272G>A	c.(271-273)CGG>CAG	p.R91Q		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	91					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TCCTGCTTCCCGGAGGAGCCA	0.602													14	37					0	0	0.001855	0	0	
GSTT2	2953	broad.mit.edu	37	22	24323151	24323151	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr22:24323151G>A	uc002zzb.3	+	2	200	c.125G>A	c.(124-126)AGC>AAC	p.S42N	DDT_uc002zza.3_5'Flank|GSTT2_uc002zzc.3_Missense_Mutation_p.S42N	NM_000854	NP_000845	P0CG30	GSTT2_HUMAN	glutathione S-transferase theta 2	42	GST N-terminal.					cytoplasm	glutathione transferase activity				0						CAGCACAAGAGCAAGGAGTTC	0.552													13	103					0	0	0.002299	0	0	
MEI1	150365	broad.mit.edu	37	22	42191783	42191783	+	Silent	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr22:42191783C>A	uc003baz.1	+	30	3736	c.3711C>A	c.(3709-3711)ACC>ACA	p.T1237T	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc011apd.1_RNA|MEI1_uc003bbb.1_Silent_p.T623T|MEI1_uc003bbc.1_Silent_p.T605T|MEI1_uc010gym.1_Silent_p.T570T|MEI1_uc003bbd.1_Silent_p.T450T|MEI1_uc010gyn.1_RNA|MEI1_uc003bbe.1_RNA|MEI1_uc003bbf.2_Silent_p.T251T|MEI1_uc003bbg.2_Silent_p.T207T	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	1237							binding			central_nervous_system(1)|skin(1)	2						TGGCCCAGACCCTGCAGGCCT	0.607													19	23					1.10513e-12	1.2347e-12	0.002299	1	0	
CHKB-CPT1B	386593	broad.mit.edu	37	22	51020991	51020991	+	Translation_Start_Site	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr22:51020991C>T	uc003bmu.2	-	1	438	c.-529G>A	c.(-531--527)CCGTG>CCATG		CHKB_uc003bms.2_Missense_Mutation_p.V74M|CHKB-CPT1B_uc003bmt.1_Translation_Start_Site|CHKB_uc003bmv.2_Missense_Mutation_p.V74M|LOC100144603_uc003bmw.3_5'Flank					SubName: Full=Choline kinase beta; SubName: Full=HCG16873, isoform CRA_a; SubName: Full=cDNA, FLJ95084, Homo sapiens choline kinase-like (CHKL), transcript variant 1,mRNA;												0						TCCCACCTCACGGGGTAAACC	0.697													3	8					0	0	0.004672	0	0	
RAD18	56852	broad.mit.edu	37	3	8932127	8932127	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:8932127G>A	uc003brd.2	-	12	1408	c.1331C>T	c.(1330-1332)TCA>TTA	p.S444L	RAD18_uc003bre.2_RNA	NM_020165	NP_064550	Q9NS91	RAD18_HUMAN	postreplication repair protein hRAD18p	444					DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			skin(3)|ovary(2)	5				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		TATGATGTCTGAACTGGAACT	0.249								Rad6_pathway					32	17					0	0	0.003755	0	0	
SCN5A	6331	broad.mit.edu	37	3	38618180	38618180	+	Silent	SNP	G	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:38618180G>C	uc003cio.2	-	19	3677	c.3483C>G	c.(3481-3483)GTC>GTG	p.V1161V	SCN5A_uc003cin.2_Silent_p.V1160V|SCN5A_uc003cil.3_Silent_p.V1161V|SCN5A_uc010hhi.2_Silent_p.V1161V|SCN5A_uc010hhk.2_Silent_p.V1160V|SCN5A_uc011ayr.1_Silent_p.V1107V|SCN5A_uc010hhj.1_Silent_p.V771V	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1161					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CTGGGTCCTTGACATCCTGGC	0.617													5	14					0	0	0.000602	0	0	
SCN10A	6336	broad.mit.edu	37	3	38748813	38748813	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:38748813T>G	uc003ciq.2	-	25	4343	c.4343A>C	c.(4342-4344)AAG>ACG	p.K1448T		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1448					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGAGCCCAACTTCTTCATGGC	0.532													24	58					0	0	0.006320	0	0	
ULK4	54986	broad.mit.edu	37	3	41954327	41954327	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:41954327C>A	uc003ckv.3	-	9	1069	c.868G>T	c.(868-870)GAA>TAA	p.E290*	ULK4_uc003ckw.2_Nonsense_Mutation_p.E290*|ULK4_uc003ckx.1_Nonsense_Mutation_p.E290*	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	290							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		ACGCTTGATTCCTGATCTGCT	0.373													38	37					3.09479e-21	3.55571e-21	0.006999	1	0	
GOLGB1	2804	broad.mit.edu	37	3	121388080	121388080	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:121388080C>A	uc003eei.3	-	18	9411	c.9285G>T	c.(9283-9285)AAG>AAT	p.K3095N	GOLGB1_uc010hrc.2_Missense_Mutation_p.K3100N|GOLGB1_uc003eej.3_Missense_Mutation_p.K3061N	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	3095	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CTTGAACCTGCTTCTCCAAGA	0.473													20	99					1.28384e-07	1.39585e-07	0.001882	1	0	
GOLGB1	2804	broad.mit.edu	37	3	121413488	121413488	+	Missense_Mutation	SNP	G	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:121413488G>C	uc003eei.3	-	13	5993	c.5867C>G	c.(5866-5868)TCT>TGT	p.S1956C	GOLGB1_uc010hrc.2_Missense_Mutation_p.S1961C|GOLGB1_uc003eej.3_Missense_Mutation_p.S1922C|GOLGB1_uc011bjm.1_Missense_Mutation_p.S1842C|GOLGB1_uc010hrd.1_Missense_Mutation_p.S1920C	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1956	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CTTCATTTCAGATTCCAATAG	0.358													79	132					0	0	0.003610	0	0	
DNAJB8	165721	broad.mit.edu	37	3	128181963	128181963	+	Silent	SNP	C	T	T	rs140270817		TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:128181963C>T	uc003ekk.1	-	3	1787	c.126G>A	c.(124-126)GCG>GCA	p.A42A	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	42	J.				protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		ACTTCTTCTCCGCCTCCTCCT	0.592													72	98					0	0	0.003610	0	0	
NPHP3	27031	broad.mit.edu	37	3	132416142	132416142	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr3:132416142C>A	uc003epe.1	-	14	2127	c.2050G>T	c.(2050-2052)GAA>TAA	p.E684*	NPHP3_uc003epd.1_5'UTR	NM_153240	NP_694972	Q7Z494	NPHP3_HUMAN	nephrocystin 3	684					maintenance of organ identity|negative regulation of canonical Wnt receptor signaling pathway|photoreceptor cell maintenance|regulation of Wnt receptor signaling pathway, planar cell polarity pathway|Wnt receptor signaling pathway	cilium	protein binding			ovary(1)	1						GAGTGGCATTCTGCAATTATA	0.303													13	116					9.05144e-12	1.00434e-11	0.001855	1	0	
LOC348926	348926	broad.mit.edu	37	4	3949933	3949933	+	RNA	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr4:3949933C>T	uc011bvu.1	-	5		c.402G>A			LOC348926_uc003ghn.2_RNA	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						AGAGTGTGACCGAGCCTCCCG	0.587													3	38					0	0	0.004672	0	0	
KIT	3815	broad.mit.edu	37	4	55602765	55602765	+	Silent	SNP	G	C	C	rs3733542	byFrequency	TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr4:55602765G>C	uc010igr.2	+	18	2673	c.2586G>C	c.(2584-2586)CTG>CTC	p.L862L	KIT_uc010igs.2_Silent_p.L858L	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	862	Protein kinase.|Cytoplasmic (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.L862L(5)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	TTTGGGAGCTGTTCTCTTTAG	0.418		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				5	101					0	0	0.000602	0	0	
FBXW7	55294	broad.mit.edu	37	4	153250850	153250850	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr4:153250850T>C	uc003ims.2	-	8	1359	c.1210A>G	c.(1210-1212)AAA>GAA	p.K404E	FBXW7_uc011cii.1_Missense_Mutation_p.K404E|FBXW7_uc003imt.2_Missense_Mutation_p.K404E|FBXW7_uc011cih.1_Missense_Mutation_p.K228E|FBXW7_uc003imq.2_Missense_Mutation_p.K324E|FBXW7_uc003imr.2_Missense_Mutation_p.K286E	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	404	WD 1.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GACCAAACTTTTAAAGTGTTG	0.363			Mis|N|D|F		colorectal|endometrial|T-ALL								72	16					0	0	0.003610	0	0	
ZNF622	90441	broad.mit.edu	37	5	16465699	16465699	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr5:16465699C>G	uc003jfq.2	-	1	196	c.76G>C	c.(76-78)GAC>CAC	p.D26H		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	26	U1-type 1.					cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						CGGTGCCAGTCCGTCTTATAG	0.667													37	67					0	0	0.004878	0	0	
Unknown	0	broad.mit.edu	37	5	79655242	79655242	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr5:79655242C>T	uc003kgo.2	-	1	666	c.503G>A	c.(502-504)CGT>CAT	p.R168H						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		accacctccacgaccaccacc	0.214													3	36					0	0	0.004672	0	0	
CHSY3	337876	broad.mit.edu	37	5	129520330	129520330	+	Missense_Mutation	SNP	G	A	A	rs143055952	byFrequency	TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr5:129520330G>A	uc003kvd.2	+	3	1495	c.1495G>A	c.(1495-1497)GTC>ATC	p.V499I		NM_175856	NP_787052	Q70JA7	CHSS3_HUMAN	chondroitin sulfate synthase 3	499	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(2)|pancreas(1)	3		all_cancers(142;0.0227)|Breast(839;0.198)|Prostate(80;0.215)|Lung NSC(810;0.239)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.136)		GGATGATACCGTCCTACAGGT	0.493													39	13					0	0	0.006999	0	0	
PCDHB7	56129	broad.mit.edu	37	5	140554431	140554431	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr5:140554431G>A	uc003lit.2	+	1	2189	c.2015G>A	c.(2014-2016)CGG>CAG	p.R672Q	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	672	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTACCTGCGGCTCCCGGAG	0.692													72	134					0	0	0.003610	0	0	
NMUR2	56923	broad.mit.edu	37	5	151775064	151775064	+	Missense_Mutation	SNP	C	G	G	rs4958535	byFrequency	TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr5:151775064C>G	uc003luv.2	-	3	1059	c.893G>C	c.(892-894)AGT>ACT	p.S298T		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	298	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity	p.S298I(1)		ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			CAGGGATTCACTCCACTCCTC	0.463													4	39					0	0	0.009096	0	0	
ADRA1B	147	broad.mit.edu	37	5	159344848	159344848	+	Silent	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr5:159344848C>A	uc003lxt.1	+	1	1109	c.936C>A	c.(934-936)ATC>ATA	p.I312I		NM_000679	NP_000670	P35368	ADA1B_HUMAN	alpha-1B-adrenergic receptor	312	Helical; Name=6; (By similarity).				cell proliferation|cell-cell signaling|G-protein signaling, coupled to cAMP nucleotide second messenger|intracellular protein kinase cascade	integral to plasma membrane	alpha1-adrenergic receptor activity			lung(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alfuzosin(DB00346)|Bethanidine(DB00217)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Guanfacine(DB01018)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Modafinil(DB00745)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Olanzapine(DB00334)|Phendimetrazine(DB01579)|Phenylephrine(DB00388)|Prazosin(DB00457)|Promazine(DB00420)|Propericiazine(DB01608)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Trazodone(DB00656)	CCTTCTTCATCGCTCTACCGC	0.463													55	19					3.40343e-31	4.02449e-31	0.003610	1	0	
PRPF4B	8899	broad.mit.edu	37	6	4032190	4032190	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:4032190G>T	uc003mvv.2	+	2	530	c.439G>T	c.(439-441)GAG>TAG	p.E147*	PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	147	Arg/Lys-rich (basic).					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity	p.F147L(2)		breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				CTCTGAAGAAGAGGGGGAAAT	0.403													91	74					1.31458e-49	1.57749e-49	0.003610	1	0	
DSP	1832	broad.mit.edu	37	6	7565711	7565711	+	Silent	SNP	C	T	T	rs121912992		TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:7565711C>T	uc003mxp.1	+	7	1176	c.897C>T	c.(895-897)AGC>AGT	p.S299S	DSP_uc003mxq.1_Silent_p.S299S	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	299	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.		S -> R (in ARVD8).		cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		ACGACTGGAGCGACAAGAACA	0.547													20	75					0	0	0.010504	0	0	
HIST1H2AB	8335	broad.mit.edu	37	6	26033708	26033708	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:26033708C>T	uc003nft.1	-	1	89	c.89G>A	c.(88-90)CGA>CAA	p.R30Q	HIST1H3B_uc003nfs.1_5'Flank	NM_003513	NP_003504	P04908	H2A1B_HUMAN	histone cluster 1, H2ab	30					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCGGTGCACTCGGCCCACAGG	0.617													55	55					0	0	0.003610	0	0	
RGL2	5863	broad.mit.edu	37	6	33260908	33260908	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:33260908G>T	uc003odv.2	-	16	2025	c.1892C>A	c.(1891-1893)GCC>GAC	p.A631D	RGL2_uc003odu.2_Missense_Mutation_p.A191D|RGL2_uc010jur.2_Missense_Mutation_p.A191D|RGL2_uc003odw.2_Missense_Mutation_p.A549D	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	631					Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						CCCCCCGGAGGCCTCTTCTGC	0.662													31	250					5.77227e-19	6.58527e-19	0.008361	1	0	
KCTD20	222658	broad.mit.edu	37	6	36454780	36454780	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:36454780G>A	uc003ome.2	+	8	1479	c.1088G>A	c.(1087-1089)CGC>CAC	p.R363H	KCTD20_uc011dtm.1_Missense_Mutation_p.R218H|KCTD20_uc011dtn.1_Missense_Mutation_p.R117H|KCTD20_uc010jwk.2_Missense_Mutation_p.R197H|KCTD20_uc011dto.1_Missense_Mutation_p.R117H	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	363						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						GGGAAGAGTCGCCATGTGGAT	0.473													103	122					0	0	0.003610	0	0	
USP49	25862	broad.mit.edu	37	6	41774587	41774587	+	Silent	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:41774587G>A	uc003ori.2	-	4	357	c.135C>T	c.(133-135)GCC>GCT	p.A45A		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	45	UBP-type.				ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			AGCGGCCGCAGGCCACGTGGG	0.597													18	139					0	0	0.004990	0	0	
TFAP2D	83741	broad.mit.edu	37	6	50740473	50740473	+	Missense_Mutation	SNP	G	A	A	rs143299031		TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:50740473G>A	uc003paf.2	+	8	1767	c.1255G>A	c.(1255-1257)GGA>AGA	p.G419R	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	419							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					CAAGAACGGCGGAGCGGCGGA	0.502													14	75					0	0	0.003163	0	0	
GJB7	375519	broad.mit.edu	37	6	87994325	87994325	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:87994325C>A	uc003plo.2	-	3	652	c.306G>T	c.(304-306)GAG>GAT	p.E102D		NM_198568	NP_940970	Q6PEY0	CXB7_HUMAN	gap junction protein, beta 7, 25kDa	102	Cytoplasmic (Potential).				cell communication	connexon complex|integral to membrane					0		all_cancers(76;1.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;7.38e-10)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00323)		BRCA - Breast invasive adenocarcinoma(108;0.0167)		TGTGCCTTTTCTCTCTACCCT	0.443													20	105					2.39187e-15	2.69086e-15	0.008871	1	0	
AHI1	54806	broad.mit.edu	37	6	135784313	135784313	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr6:135784313T>C	uc003qgi.2	-	8	1265	c.881A>G	c.(880-882)CAA>CGA	p.Q294R	AHI1_uc003qgh.2_Missense_Mutation_p.Q294R|AHI1_uc003qgj.2_Missense_Mutation_p.Q294R|AHI1_uc003qgk.3_RNA|AHI1_uc003qgl.3_Missense_Mutation_p.Q294R	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	294						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		TGTATCATCTTGCATGCTGTC	0.313													4	64					0	0	0.009096	0	0	
DNAH11	8701	broad.mit.edu	37	7	21621622	21621622	+	Silent	SNP	T	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:21621622T>C	uc003svc.2	+	9	1724	c.1693T>C	c.(1693-1695)TTA>CTA	p.L565L		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	565	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CTGCAATGGCTTAGAAGCTGC	0.348									Kartagener_syndrome				29	55					0	0	0.007291	0	0	
DNAH11	8701	broad.mit.edu	37	7	21654888	21654888	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:21654888C>T	uc003svc.2	+	21	4040	c.4009C>T	c.(4009-4011)CGA>TGA	p.R1337*		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1337	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TATTTATGTTCGAGTAAGATG	0.333									Kartagener_syndrome				7	33					0	0	0.003080	0	0	
NCF1	653361	broad.mit.edu	37	7	74193734	74193734	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:74193734C>T	uc003ubb.2	+	4	431	c.361C>T	c.(361-363)CGC>TGC	p.R121C	NCF1_uc010lbs.1_Missense_Mutation_p.R121C|NCF1_uc011kfh.1_Intron	NM_000265	NP_000256	P14598	NCF1_HUMAN	neutrophil cytosolic factor 1	121	PX.				cell communication|cellular defense response|innate immune response|protein targeting to membrane|respiratory burst|superoxide anion generation	cytosol|NADPH oxidase complex|soluble fraction	electron carrier activity|GTP binding|GTPase activity|phosphatidylinositol binding|SH3 domain binding|superoxide-generating NADPH oxidase activity			skin(1)	1						CTTCAAGGTGCGCCCTGATGA	0.448													12	31					0	0	0.003163	0	0	
MUC17	140453	broad.mit.edu	37	7	100680453	100680453	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:100680453C>T	uc003uxp.1	+	3	5809	c.5756C>T	c.(5755-5757)TCA>TTA	p.S1919L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1919	Extracellular (Potential).|30.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATGCCAACCTCAACTCCTAGG	0.498													69	238					0	0	0.003610	0	0	
PPP1R3A	5506	broad.mit.edu	37	7	113519744	113519744	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:113519744T>G	uc010ljy.1	-	4	1434	c.1403A>C	c.(1402-1404)AAA>ACA	p.K468T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	468					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTCATGTTTTTTATTAAGGTT	0.393													21	61					0	0	0.008871	0	0	
NUP205	23165	broad.mit.edu	37	7	135291543	135291543	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:135291543A>G	uc003vsw.2	+	21	2981	c.2950A>G	c.(2950-2952)AGA>GGA	p.R984G		NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	984					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						TCATGAAACAAGAATCCACAT	0.363													51	45					0	0	0.003610	0	0	
TTC26	79989	broad.mit.edu	37	7	138824648	138824648	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:138824648G>T	uc003vus.2	+	4	361	c.247G>T	c.(247-249)GCT>TCT	p.A83S	TTC26_uc003vuq.2_Missense_Mutation_p.A83S|TTC26_uc011kqm.1_Missense_Mutation_p.A83S|TTC26_uc003vur.3_Missense_Mutation_p.A83S|TTC26_uc011kqn.1_Missense_Mutation_p.A83S|TTC26_uc011kqo.1_Missense_Mutation_p.A52S|TTC26_uc011kqp.1_5'UTR|TTC26_uc003vut.2_5'UTR|TTC26_uc011kqq.1_Missense_Mutation_p.A83S	NM_024926	NP_079202	A0AVF1	TTC26_HUMAN	tetratricopeptide repeat domain 26 isoform 1	83	TPR 1.						binding			ovary(1)	1						ATACGAAAATGCTACAAAAGA	0.378													10	54					3.86212e-05	4.03654e-05	0.008291	1	0	
KRBA1	84626	broad.mit.edu	37	7	149418620	149418620	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr7:149418620C>T	uc003wfz.2	+	5	859	c.460C>T	c.(460-462)CCC>TCC	p.P154S	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_5'Flank	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	154										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			AAGTCCTCTCCCCATCAGTGA	0.612													7	7					0	0	0.003080	0	0	
CSGALNACT1	55790	broad.mit.edu	37	8	19277976	19277976	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr8:19277976C>T	uc011kyn.1	-	7	2071	c.1007G>A	c.(1006-1008)CGG>CAG	p.R336Q	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.R336Q|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.R335Q	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	336	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		TCCCTTTCCCCGAGAAAATTC	0.473													27	253					0	0	0.005443	0	0	
AGPAT6	137964	broad.mit.edu	37	8	41467367	41467367	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr8:41467367G>A	uc003xnz.2	+	4	1368	c.429G>A	c.(427-429)TGG>TGA	p.W143*		NM_178819	NP_848934	Q86UL3	GPAT4_HUMAN	lysophosphatidic acid acyltransferase zeta	143					acyl-CoA metabolic process|lactation|phosphatidylcholine biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	glycerol-3-phosphate O-acyltransferase activity				0	Ovarian(28;0.00769)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.0131)|Lung NSC(58;0.0363)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	OV - Ovarian serous cystadenocarcinoma(14;0.00126)|Colorectal(10;0.0014)|Lung(22;0.00177)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0147)			TGGAGTCCTGGAACCTGCTGA	0.488													35	75					0	0	0.004878	0	0	
LRRC67	286187	broad.mit.edu	37	8	67929969	67929969	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr8:67929969G>A	uc003xxc.2	-	2	159	c.14C>T	c.(13-15)ACC>ATC	p.T5I		NM_001013626	NP_001013648	Q7Z4L9	LRC67_HUMAN	leucine rich repeat containing 67	5											0						TAGATCCAAGGTCAGTCGAAC	0.343													31	23					0	0	0.003755	0	0	
CA2	760	broad.mit.edu	37	8	86386597	86386597	+	Silent	SNP	A	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr8:86386597A>G	uc003ydk.2	+	4	576	c.396A>G	c.(394-396)AAA>AAG	p.K132K		NM_000067	NP_000058	P00918	CAH2_HUMAN	carbonic anhydrase II	132					one-carbon metabolic process	apical part of cell	carbonate dehydratase activity|zinc ion binding			central_nervous_system(1)	1					Acetazolamide(DB00819)|Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Brinzolamide(DB01194)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Dorzolamide(DB00869)|Ethinamate(DB01031)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	ATTTTGGGAAAGCTGTGCAGC	0.403													76	58					0	0	0.003610	0	0	
KDM4C	23081	broad.mit.edu	37	9	7128217	7128217	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr9:7128217C>T	uc003zkh.2	+	19	3342	c.2762C>T	c.(2761-2763)ACA>ATA	p.T921I	KDM4C_uc011lmj.1_RNA|KDM4C_uc003zkg.2_Missense_Mutation_p.T921I|KDM4C_uc011lmk.1_Missense_Mutation_p.T666I|KDM4C_uc011lml.1_Missense_Mutation_p.T608I	NM_015061	NP_055876	Q9H3R0	KDM4C_HUMAN	jumonji domain containing 2C isoform 1	921	Tudor 1.				positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription, DNA-dependent	nuclear chromatin	androgen receptor binding|enzyme binding|histone demethylase activity (H3-K9 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1						AGCAGAGACACATTTCCTGAG	0.433													32	46					0	0	0.002836	0	0	
NPR2	4882	broad.mit.edu	37	9	35805937	35805937	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr9:35805937C>T	uc003zyd.2	+	14	2158	c.2158C>T	c.(2158-2160)CGC>TGC	p.R720C	NPR2_uc010mlb.2_Missense_Mutation_p.R696C	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	720	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	GATAGCACTTCGCAGTGGTCC	0.552													32	78					0	0	0.002096	0	0	
FLJ46321	389763	broad.mit.edu	37	9	84606105	84606105	+	Silent	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr9:84606105C>A	uc004amn.2	+	4	767	c.720C>A	c.(718-720)CCC>CCA	p.P240P		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	240	Pro-rich.					integral to membrane					0						ATTCCCCACCCCAACAGCTTC	0.522													26	274					5.6714e-07	6.08455e-07	0.002096	1	0	
C9orf102	375748	broad.mit.edu	37	9	98691121	98691121	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr9:98691121G>A	uc004avt.3	+	11	2147	c.1759G>A	c.(1759-1761)GTT>ATT	p.V587I	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_Missense_Mutation_p.V289I|C9orf102_uc010mry.1_Missense_Mutation_p.V289I|C9orf102_uc010mrz.2_Missense_Mutation_p.V398I|C9orf102_uc004avu.2_5'UTR	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	587	Helicase C-terminal.				DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				TACACAAGATGTTAACATTTG	0.308													17	85					0	0	0.004007	0	0	
ZNF462	58499	broad.mit.edu	37	9	109689674	109689674	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr9:109689674G>A	uc004bcz.2	+	3	3770	c.3481G>A	c.(3481-3483)GAA>AAA	p.E1161K	ZNF462_uc010mto.2_Missense_Mutation_p.E1009K|ZNF462_uc004bda.2_Missense_Mutation_p.E1009K	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1161					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GAGAGGGGTCGAAGGGCCCCA	0.552													31	118					0	0	0.007291	0	0	
NELF	26012	broad.mit.edu	37	9	140347581	140347581	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr9:140347581A>G	uc004cna.2	-	9	1206	c.974T>C	c.(973-975)CTG>CCG	p.L325P	C9orf167_uc011mew.1_Intron|NELF_uc011mex.1_Missense_Mutation_p.L122P|NELF_uc010nci.2_Missense_Mutation_p.L69P|NELF_uc011mey.1_RNA|NELF_uc011mez.1_Missense_Mutation_p.L302P|NELF_uc004cmz.2_Missense_Mutation_p.L323P|NELF_uc004cnc.2_Missense_Mutation_p.L300P|NELF_uc004cnb.2_Missense_Mutation_p.L295P	NM_001130969	NP_001124441	Q6X4W1	NELF_HUMAN	nasal embryonic LHRH factor isoform a	325						nucleus|plasma membrane					0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000222)|Epithelial(140;0.000888)		GTCCCAGTCCAGGTCCTCGAA	0.657													5	37					0	0	0.001168	0	0	
ZNF645	158506	broad.mit.edu	37	X	22291239	22291239	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chrX:22291239A>C	uc004dai.1	+	1	180	c.131A>C	c.(130-132)AAC>ACC	p.N44T		NM_152577	NP_689790	Q8N7E2	ZN645_HUMAN	zinc finger protein 645	44						intracellular	zinc ion binding			lung(1)|pancreas(1)	2						ATTAAGATAAACATCATAGGT	0.348													8	86					0	0	0.004482	0	0	
USP9X	8239	broad.mit.edu	37	X	41069826	41069826	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chrX:41069826G>A	uc004dfb.2	+	33	5713	c.5080G>A	c.(5080-5082)GTG>ATG	p.V1694M	USP9X_uc004dfc.2_Missense_Mutation_p.V1694M	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	1694					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						TAATTCATTGGTGGATAGTTT	0.373													81	5					0	0	0.003610	0	0	
TBX22	50945	broad.mit.edu	37	X	79286562	79286562	+	Silent	SNP	C	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chrX:79286562C>A	uc010nmg.1	+	9	1649	c.1515C>A	c.(1513-1515)GGC>GGA	p.G505G	TBX22_uc004edi.1_Silent_p.G385G|TBX22_uc004edj.1_Silent_p.G505G	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	505					multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						TTGGAGAAGGCAAATGTAATC	0.313													11	21					5.50884e-06	5.83289e-06	0.001368	1	0	
PABPC5	140886	broad.mit.edu	37	X	90691445	90691445	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chrX:90691445G>A	uc004efg.2	+	2	1309	c.869G>A	c.(868-870)CGG>CAG	p.R290Q	PABPC5_uc004eff.1_Missense_Mutation_p.R126Q	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	290						cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						AGATTTGAACGGCTGAGGTTA	0.443													6	28					0	0	0.001168	0	0	
PRR5L	79899	broad.mit.edu	37	11	36467865	36467865	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:36467865delA	uc001mwo.3	+	7	849	c.460delA	c.(460-462)ATCfs	p.I154fs	PRR5L_uc001mwp.2_Frame_Shift_Del_p.I154fs|PRR5L_uc009ykk.2_Intron|PRR5L_uc010rfc.1_Frame_Shift_Del_p.I154fs	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	154										ovary(1)	1						GGAGCTGACTATCCGCCAGAT	0.597													43	10	---	---	---	---						.
TMEM132A	54972	broad.mit.edu	37	11	60703766	60703768	+	In_Frame_Del	DEL	AGG	-	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr11:60703766_60703768delAGG	uc001nqj.2	+	11	2652_2654	c.2459_2461delAGG	c.(2458-2463)AAGGAG>AAG	p.E822del	TMEM132A_uc001nqi.2_In_Frame_Del_p.E823del|TMEM132A_uc001nqm.2_In_Frame_Del_p.E32del	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	822	Glu-rich.|Binds to HSPA5/GRP78 (By similarity).|Confers cellular localization similar to full-length form (By similarity).|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						GAGGCCAGGAAGGAGGAGACCGA	0.537													63	35	---	---	---	---						.
LRP1B	53353	broad.mit.edu	37	2	141819648	141819648	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BR-8678-01A-11D-2394-08	TCGA-BR-8678-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	69ab9742-cef4-48d6-af97-cbab33a0bb8f	69ead55b-d90a-4eff-86b6-b2bcfdb8f9a3	g.chr2:141819648delT	uc002tvj.1	-	8	2180	c.1208delA	c.(1207-1209)AATfs	p.N403fs	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	403	Extracellular (Potential).|LDL-receptor class B 4.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGTGTGTCTATTTTTTCCTTG	0.393										TSP Lung(27;0.18)			50	86	---	---	---	---						.
