Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
UBE4B	10277	broad.mit.edu	37	1	10239484	10239484	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:10239484G>A	uc001aqs.3	+	27	4424	c.3711G>A	c.(3709-3711)ATG>ATA	p.M1237I	UBE4B_uc001aqr.3_Missense_Mutation_p.M1108I|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.M692I|UBE4B_uc001aqu.2_Missense_Mutation_p.M118I	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	1237	U-box.				apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		ACCCTCTGATGGACACCCTCA	0.552													31	49					0	0	0.007291	0	0	
VPS13D	55187	broad.mit.edu	37	1	12337490	12337490	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:12337490G>A	uc001atv.2	+	19	3986	c.3845G>A	c.(3844-3846)TGT>TAT	p.C1282Y	VPS13D_uc001atw.2_Missense_Mutation_p.C1282Y|VPS13D_uc001atx.2_Missense_Mutation_p.C470Y	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	1282					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AAACAGGAGTGTTTTCTCAAC	0.388													76	91					0	0	0.014410	0	0	
SPEN	23013	broad.mit.edu	37	1	16254749	16254749	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:16254749C>T	uc001axk.1	+	11	2218	c.2014C>T	c.(2014-2016)CGA>TGA	p.R672*	SPEN_uc010obp.1_Nonsense_Mutation_p.R631*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	672	Arg-rich.|Tyr-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CTATGAATCACGATACTACGA	0.438													51	46					0	0	0.014410	0	0	
MST1P2	11209	broad.mit.edu	37	1	16974955	16974955	+	RNA	SNP	A	G	G	rs149751487	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:16974955A>G	uc010och.1	+	7		c.1415A>G			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GCATGCTTTGATGTCTGGGAC	0.657													4	35					0	0	0.001168	0	0	
UBR4	23352	broad.mit.edu	37	1	19448467	19448467	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:19448467G>A	uc001bbi.2	-	67	9860	c.9856C>T	c.(9856-9858)CGA>TGA	p.R3286*	UBR4_uc001bbk.1_Nonsense_Mutation_p.R933*	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3286					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTGATGGTTCGCTGGGCGGCA	0.418													19	28					0	0	0.010504	0	0	
UBR4	23352	broad.mit.edu	37	1	19499975	19499975	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:19499975C>T	uc001bbi.2	-	23	3127	c.3123G>A	c.(3121-3123)TGG>TGA	p.W1041*	UBR4_uc001bbm.1_Nonsense_Mutation_p.W252*	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1041					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GCCGAGAAGACCATCGCAGAG	0.453													11	23					0	0	0.010729	0	0	
KIAA0754	643314	broad.mit.edu	37	1	39879387	39879387	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:39879387G>A	uc009vvt.1	+	1	4212	c.3450G>A	c.(3448-3450)GTG>GTA	p.V1150V	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc010oiu.1_Intron	NM_015038	NP_055853	O94854	K0754_HUMAN	hypothetical protein LOC643314	1014	11.|Ala-rich.										0	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CTCCTGCAGTGCCCACCCCAG	0.697													13	14					0	0	0.016723	0	0	
BSND	7809	broad.mit.edu	37	1	55464928	55464928	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:55464928G>A	uc001cye.2	+	1	312	c.69G>A	c.(67-69)ACG>ACA	p.T23T		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	23	Helical; (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						CCCTCGGTACGTTCCTCATGA	0.617													28	36					0	0	0.006320	0	0	
SGIP1	84251	broad.mit.edu	37	1	67145427	67145427	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:67145427T>C	uc001dcr.2	+	14	1023	c.806T>C	c.(805-807)ATT>ACT	p.I269T	SGIP1_uc010opd.1_Missense_Mutation_p.I36T|SGIP1_uc001dcs.2_Missense_Mutation_p.I36T|SGIP1_uc001dct.2_Missense_Mutation_p.I36T|uc010ope.1_5'Flank|SGIP1_uc009wat.2_Missense_Mutation_p.I36T	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	269	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						CCCTTAACAATTGGACCAGGT	0.473													24	34					0	0	0.005443	0	0	
GBP6	163351	broad.mit.edu	37	1	89848368	89848368	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:89848368A>C	uc001dnf.2	+	8	1572	c.1298A>C	c.(1297-1299)AAG>ACG	p.K433T	GBP6_uc010ost.1_Missense_Mutation_p.K303T	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6	433							GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		GGAGGGCACAAGCTCTACATG	0.443													31	38					0	0	0.008361	0	0	
HFM1	164045	broad.mit.edu	37	1	91817190	91817190	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:91817190G>C	uc001doa.3	-	17	2088	c.1988C>G	c.(1987-1989)ACA>AGA	p.T663R	HFM1_uc009wdb.2_Intron|HFM1_uc010osu.1_Missense_Mutation_p.T342R|HFM1_uc010osv.1_Missense_Mutation_p.T347R	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	663	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		TGCAGTAGCTGTAGTGTCAAA	0.368													28	34					0	0	0.015359	0	0	
COL11A1	1301	broad.mit.edu	37	1	103427470	103427470	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:103427470T>C	uc001dul.2	-	41	3438	c.3120A>G	c.(3118-3120)GCA>GCG	p.A1040A	COL11A1_uc001duk.2_Silent_p.A236A|COL11A1_uc001dum.2_Silent_p.A1052A|COL11A1_uc001dun.2_Silent_p.A1001A|COL11A1_uc009weh.2_Silent_p.A924A	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1040	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCAGTCCAGGTGCACCCTGGG	0.398													3	6					0	0	0.004672	0	0	
NBPF10	100132406	broad.mit.edu	37	1	145296448	145296448	+	Missense_Mutation	SNP	T	A	A	rs4996268	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:145296448T>A	uc001end.3	+	3	405	c.370T>A	c.(370-372)TAT>AAT	p.Y124N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.Y124N|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	124											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		CCGCTCATTGTATGAGCATCT	0.562													24	233					0	0	0.005443	0	0	
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	G	G	rs9424867		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:145302714A>G	uc001end.3	+	8	1187	c.1152A>G	c.(1150-1152)TTA>TTG	p.L384L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_5'UTR|NBPF10_uc001emq.1_Silent_p.L113L	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527													5	49					0	0	0.014758	0	0	
SV2A	9900	broad.mit.edu	37	1	149883495	149883495	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:149883495G>T	uc001etg.2	-	3	1151	c.660C>A	c.(658-660)TTC>TTA	p.F220L	SV2A_uc001eth.2_Missense_Mutation_p.F220L	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	220	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	CTCCCCAGAGGAAGGCTCCCA	0.582													11	18					3.27435e-08	3.38797e-08	0.020292	1	0	
LCE1B	353132	broad.mit.edu	37	1	152785212	152785212	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:152785212G>A	uc001faq.2	+	1	766	c.290G>A	c.(289-291)AGC>AAC	p.S97N		NM_178349	NP_848126	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	97	Gly-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCTGCTGCAGCCAGCCCTCC	0.647													34	25					0	0	0.010818	0	0	
TDRD10	126668	broad.mit.edu	37	1	154514512	154514512	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:154514512G>A	uc009wow.2	+	7	1220	c.382G>A	c.(382-384)GCT>ACT	p.A128T	TDRD10_uc001ffd.2_Missense_Mutation_p.A128T|TDRD10_uc001ffe.2_Missense_Mutation_p.A49T	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	128							nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GTTGGAGAAGGCTTCTGGTGA	0.498													13	14					0	0	0.020292	0	0	
LRRN2	10446	broad.mit.edu	37	1	204588977	204588977	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:204588977G>A	uc001hbe.1	-	3	532	c.144C>T	c.(142-144)CGC>CGT	p.R48R	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.R48R|LRRN2_uc009xbf.1_Silent_p.R48R|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	48	Extracellular (Potential).|LRRNT.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			TGGTAGCCTCGCGGTAGGACG	0.657													17	16					0	0	0.004007	0	0	
PTPN14	5784	broad.mit.edu	37	1	214576291	214576291	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:214576291C>T	uc001hkk.1	-	6	787	c.516G>A	c.(514-516)TTG>TTA	p.L172L	PTPN14_uc010pty.1_Silent_p.L73L	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	172	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CTTCCAGGGCCAAATCCTATA	0.502													32	45					0	0	0.008361	0	0	
LBR	3930	broad.mit.edu	37	1	225599126	225599126	+	Silent	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:225599126A>G	uc001hoy.2	-	9	1244	c.1101T>C	c.(1099-1101)GAT>GAC	p.D367D	LBR_uc001hoz.2_Silent_p.D367D|LBR_uc001hpa.1_Silent_p.D367D	NM_002296	NP_002287	Q14739	LBR_HUMAN	lamin B receptor	367					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			ovary(1)|skin(1)	2	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		CAATGAAGAAATCATAGACAG	0.448													28	32					0	0	0.006320	0	0	
OBSCN	84033	broad.mit.edu	37	1	228437876	228437876	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:228437876C>T	uc009xez.1	+	14	4288	c.4244C>T	c.(4243-4245)GCG>GTG	p.A1415V	OBSCN_uc001hsn.2_Missense_Mutation_p.A1415V	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1415	Ig-like 14.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCATGCCAGGCGGACACCGGG	0.647													41	43					0	0	0.005524	0	0	
C1orf101	257044	broad.mit.edu	37	1	244662322	244662322	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr1:244662322T>C	uc001iam.2	+	7	429	c.370T>C	c.(370-372)TAT>CAT	p.Y124H	C1orf101_uc001iak.1_Intron|C1orf101_uc001ial.2_Missense_Mutation_p.Y124H|C1orf101_uc010pym.1_Intron|C1orf101_uc010pyn.1_Intron	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	124	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			TGTGTGGGCATATGATCCAGA	0.343													10	19					0	0	0.010729	0	0	
AKR1C1	1645	broad.mit.edu	37	10	5008166	5008166	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:5008166A>G	uc001iho.2	+	7	986	c.145A>G	c.(145-147)ATT>GTT	p.I49V	AKR1E2_uc001ihl.1_Intron|AKR1C2_uc010qan.1_Intron|AKR1C3_uc001ihr.2_Missense_Mutation_p.I49V|AKR1C1_uc009xhx.2_Missense_Mutation_p.I49V|AKR1C1_uc001ihq.2_Missense_Mutation_p.I49V	NM_001353	NP_001344	Q04828	AK1C1_HUMAN	aldo-keto reductase family 1, member C1	49					bile acid and bile salt transport|bile acid metabolic process|cholesterol homeostasis|intestinal cholesterol absorption|protein homooligomerization|response to organophosphorus|xenobiotic metabolic process	cytosol	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid binding|indanol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			ovary(2)	2					NADH(DB00157)	CTTCCGCCATATTGATTCTGC	0.433													31	55					0	0	0.008361	0	0	
KIAA1217	56243	broad.mit.edu	37	10	24832186	24832186	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:24832186C>T	uc001iru.3	+	19	4390	c.3987C>T	c.(3985-3987)AGC>AGT	p.S1329S	KIAA1217_uc001irs.2_Intron|KIAA1217_uc001irt.3_Intron|KIAA1217_uc010qcy.1_Intron|KIAA1217_uc010qcz.1_Intron|KIAA1217_uc001irw.2_Intron|KIAA1217_uc001irz.2_Intron|KIAA1217_uc001irx.2_Silent_p.S1012S|KIAA1217_uc001iry.2_Intron|KIAA1217_uc001isa.1_Silent_p.S165S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1329					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						CAGAATCAAGCGTGCATGATT	0.433													43	48					0	0	0.008740	0	0	
GAD2	2572	broad.mit.edu	37	10	26506781	26506781	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:26506781C>T	uc001isp.2	+	3	650	c.147C>T	c.(145-147)TAC>TAT	p.Y49Y	GAD2_uc009xkr.2_Silent_p.Y49Y|GAD2_uc001isq.2_Silent_p.Y49Y	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	49					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	CCCTGCTCTACGGAGACGCCG	0.642													6	9					0	0	0.001984	0	0	
LOC387646	387646	broad.mit.edu	37	10	27538369	27538369	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:27538369T>G	uc001its.2	-	1	2867	c.1024A>C	c.(1024-1026)ACA>CCA	p.T342P		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						ATCTCTGTTGTGGATTCTGGA	0.527													18	117					0	0	0.014410	0	0	
LOC387646	387646	broad.mit.edu	37	10	27538372	27538373	+	Missense_Mutation	DNP	AT	GA	GA			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:27538372_27538373AT>GA	uc001its.2	-	1	2863_2864	c.1020_1021AT>TC	c.(1018-1023)GAATCC>GATCCC	p.340_341ES>DP		NR_003525				SubName: Full=cDNA FLJ44924 fis, clone BRAMY3014555;												0						TCTGTTGTGGATTCTGGAGTGG	0.525													15	115					0	0	0.004672	0	0	
OGDHL	55753	broad.mit.edu	37	10	50950980	50950980	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:50950980G>A	uc001jie.2	-	15	2048	c.1906C>T	c.(1906-1908)CGG>TGG	p.R636W	OGDHL_uc009xog.2_Missense_Mutation_p.R663W|OGDHL_uc010qgt.1_Missense_Mutation_p.R579W|OGDHL_uc010qgu.1_Missense_Mutation_p.R427W|OGDHL_uc009xoh.2_Missense_Mutation_p.R427W	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	636					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TCCACCGTCCGGTTCTTGGTC	0.662													13	19					0	0	0.016723	0	0	
PCDH15	65217	broad.mit.edu	37	10	55571328	55571328	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:55571328A>C	uc010qhu.1	-	34	4820	c.4425T>G	c.(4423-4425)ATT>ATG	p.I1475M	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron	NM_001142770	NP_001136242	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TAACTGTAATAATCTTGTCCA	0.254										HNSCC(58;0.16)			6	8					0	0	0.001168	0	0	
KIAA0913	23053	broad.mit.edu	37	10	75557209	75557209	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:75557209C>T	uc009xrl.2	+	18	3525	c.3493C>T	c.(3493-3495)CGA>TGA	p.R1165*	KIAA0913_uc001jve.2_Nonsense_Mutation_p.R1170*|KIAA0913_uc001jvf.2_Nonsense_Mutation_p.R1165*|KIAA0913_uc001jvh.2_RNA|KIAA0913_uc001jvi.2_Nonsense_Mutation_p.R600*|KIAA0913_uc010qkr.1_Nonsense_Mutation_p.R588*|KIAA0913_uc001jvj.2_Nonsense_Mutation_p.R588*|KIAA0913_uc009xrn.1_5'Flank	NM_015037	NP_055852	A7E2V4	K0913_HUMAN	hypothetical protein LOC23053	1165	Ser-rich.			R -> Q (in Ref. 4; BAB14664).			zinc ion binding			breast(1)	1	Prostate(51;0.0112)					GAGACCACTTCGAGGGGGCTG	0.592													22	42					0	0	0.014323	0	0	
SAMD8	142891	broad.mit.edu	37	10	76928353	76928353	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:76928353C>T	uc001jwx.1	+	4	832	c.729C>T	c.(727-729)CGC>CGT	p.R243R	SAMD8_uc001jwy.1_Silent_p.R243R	NM_144660	NP_653261	Q96LT4	SAMD8_HUMAN	sterile alpha motif domain containing 8	243	Helical; (Potential).				sphingomyelin biosynthetic process	integral to membrane					0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					TCTTGCTTCGCTGCTTTACCA	0.448													34	57					0	0	0.012213	0	0	
VDAC2	7417	broad.mit.edu	37	10	76970891	76970891	+	Splice_Site	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:76970891G>T	uc001jwz.2	+	2	135	c.-24_splice	c.e2-1		VDAC2_uc010qld.1_Splice_Site|VDAC2_uc001jxa.2_Splice_Site|VDAC2_uc010qle.1_Splice_Site	NM_003375	NP_003366	P45880	VDAC2_HUMAN	voltage-dependent anion channel 2							mitochondrial nucleoid|mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.0642)|all_epithelial(25;0.00604)|Prostate(51;0.0112)|Ovarian(15;0.183)				Dihydroxyaluminium(DB01375)	CCCTCCCGCAGATTCCCCTCT	0.672													3	3					0.004672	0.00471513	0.004672	1	0	
PTEN	5728	broad.mit.edu	37	10	89624242	89624242	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:89624242A>G	uc001kfb.2	+	2	1047	c.16A>G	c.(16-18)AAA>GAA	p.K6E	KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	6					activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.?(13)|p.0?(12)|p.K6fs*4(10)|p.K6I(1)|p.K6N(1)|p.K6R(1)|p.A3fs*14(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		AGCCATCATCAAAGAGATCGT	0.488		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			49	65					0	0	0.014410	0	0	
PTEN	5728	broad.mit.edu	37	10	89624286	89624286	+	Silent	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:89624286A>G	uc001kfb.2	+	2	1091	c.60A>G	c.(58-60)GGA>GGG	p.G20G	KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	20	Phosphatase tensin-type.		G -> E (reduced phosphatase activity towards Ins(1,3,4,5)P4; retains phosphatase activity towards PtdIns(3,4,5)P3).		activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.?(13)|p.0?(12)|p.F21fs*3(1)|p.G20*(1)|p.Y16fs*21(1)|p.R14_D22del(1)|p.G20E(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		AAGAGGATGGATTCGACTTAG	0.468		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			34	61					0	0	0.013726	0	0	
PTEN	5728	broad.mit.edu	37	10	89624297	89624297	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:89624297A>T	uc001kfb.2	+	2	1102	c.71A>T	c.(70-72)GAC>GTC	p.D24V	KILLIN_uc009xti.2_5'Flank	NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	24	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.?(13)|p.0?(12)|p.D24G(4)|p.D24E(2)|p.D24N(2)|p.D24fs*19(2)|p.D24Y(2)|p.D24fs*20(2)|p.D24_L25del(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		TTCGACTTAGACTTGACCTGT	0.463		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			29	51					0	0	0.007291	0	0	
GBF1	8729	broad.mit.edu	37	10	104140096	104140096	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:104140096C>T	uc001kux.1	+	37	5206	c.4966C>T	c.(4966-4968)CAC>TAC	p.H1656Y	GBF1_uc001kuy.1_Missense_Mutation_p.H1652Y|GBF1_uc001kuz.1_Missense_Mutation_p.H1653Y	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1656					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CAAGTACATGCACGCAGGCTC	0.567													40	66					0	0	0.006230	0	0	
MUC5B	727897	broad.mit.edu	37	11	1275470	1275470	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:1275470G>A	uc009ycr.1	+	55	16497	c.16371G>A	c.(16369-16371)ACG>ACA	p.T5457T	MUC5B_uc001ltb.2_Silent_p.T5125T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5122	VWFD 4.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		ACTACTGCACGGCCTCTGCCA	0.597													15	11					0	0	0.004007	0	0	
TRPM5	29850	broad.mit.edu	37	11	2435376	2435376	+	Missense_Mutation	SNP	C	T	T	rs140559697	byFrequency	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:2435376C>T	uc001lwm.3	-	12	1814	c.1805G>A	c.(1804-1806)CGG>CAG	p.R602Q	TRPM5_uc010qxl.1_Missense_Mutation_p.R602Q|TRPM5_uc009ydn.2_Missense_Mutation_p.R604Q	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	602	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		GCAGCGGTTCCGGCGCACCAG	0.677													4	8					0	0	0.014758	0	0	
OR2D3	120775	broad.mit.edu	37	11	6942645	6942645	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:6942645G>A	uc010rav.1	+	1	413	c.413G>A	c.(412-414)CGG>CAG	p.R138Q		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCCTATGACCGGTATGTGGCT	0.507													49	70					0	0	0.014410	0	0	
ST5	6764	broad.mit.edu	37	11	8728732	8728732	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:8728732G>A	uc001mgt.2	-	13	2657	c.2471C>T	c.(2470-2472)GCA>GTA	p.A824V	ST5_uc009yfr.2_Missense_Mutation_p.A404V|ST5_uc001mgu.2_Missense_Mutation_p.A404V|ST5_uc001mgv.2_Missense_Mutation_p.A824V|ST5_uc010rbq.1_RNA|ST5_uc010rbp.1_Missense_Mutation_p.A337V|ST5_uc009yfs.2_RNA	NM_213618	NP_998783	P78524	ST5_HUMAN	suppression of tumorigenicity 5 isoform 1	824	DENN.				positive regulation of ERK1 and ERK2 cascade		protein binding			upper_aerodigestive_tract(1)	1				Epithelial(150;2.63e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0352)		ATAGACCAATGCAGCGGAGAT	0.602													19	23					0	0	0.006122	0	0	
MICAL2	9645	broad.mit.edu	37	11	12231128	12231128	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:12231128G>A	uc001mjz.2	+	6	962	c.674G>A	c.(673-675)CGC>CAC	p.R225H	MICAL2_uc010rch.1_Missense_Mutation_p.R225H|MICAL2_uc001mka.2_Missense_Mutation_p.R225H|MICAL2_uc010rci.1_Missense_Mutation_p.R225H|MICAL2_uc001mkb.2_Missense_Mutation_p.R225H|MICAL2_uc001mkc.2_Missense_Mutation_p.R225H|MICAL2_uc001mkd.2_Missense_Mutation_p.R54H	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	225						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GCCGATGGCCGCAGGAACACC	0.527													27	33					0	0	0.021523	0	0	
MICAL2	9645	broad.mit.edu	37	11	12244261	12244261	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:12244261C>G	uc001mjz.2	+	11	1708	c.1420C>G	c.(1420-1422)CTC>GTC	p.L474V	MICAL2_uc010rch.1_Missense_Mutation_p.L474V|MICAL2_uc001mka.2_Missense_Mutation_p.L474V|MICAL2_uc010rci.1_Missense_Mutation_p.L474V|MICAL2_uc001mkb.2_Missense_Mutation_p.L474V|MICAL2_uc001mkc.2_Missense_Mutation_p.L474V|MICAL2_uc001mkd.2_Missense_Mutation_p.L303V|MICAL2_uc010rcj.1_5'UTR	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	474						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		GTACCCAAACCTCAACTCACA	0.557													10	14					0	0	0.008291	0	0	
PIK3C2A	5286	broad.mit.edu	37	11	17156677	17156677	+	Silent	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:17156677A>T	uc001mmq.3	-	9	1944	c.1878T>A	c.(1876-1878)ACT>ACA	p.T626T	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Silent_p.T246T|PIK3C2A_uc001mmr.3_Intron|PIK3C2A_uc010rcx.1_Silent_p.T626T	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	626					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	AACTCCTGCTAGTGTCTTCTC	0.328													46	77					0	0	0.013114	0	0	
BBOX1	8424	broad.mit.edu	37	11	27114876	27114876	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:27114876G>T	uc001mre.1	+	5	864	c.496G>T	c.(496-498)GGG>TGG	p.G166W	BBOX1_uc009yih.1_Missense_Mutation_p.G166W|BBOX1_uc001mrg.1_Missense_Mutation_p.G166W	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	166					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	TTCAAAACTTGGGAAAAGGAT	0.423													20	37					7.41877e-09	7.72494e-09	0.012319	1	0	
LGR4	55366	broad.mit.edu	37	11	27434338	27434338	+	Missense_Mutation	SNP	C	G	G	rs144168526	byFrequency	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:27434338C>G	uc001mrj.3	-	2	740	c.255G>C	c.(253-255)GAG>GAC	p.E85D	LGR4_uc001mrk.3_Intron	NM_018490	NP_060960	Q9BXB1	LGR4_HUMAN	leucine-rich repeat-containing G protein-coupled	85	LRR 2.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			ovary(1)	1						ATACTTACAGCTCTTCTAGAA	0.333													25	48					0	0	0.005443	0	0	
MADD	8567	broad.mit.edu	37	11	47303141	47303141	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:47303141A>T	uc001ner.1	+	8	1497	c.1306A>T	c.(1306-1308)AGT>TGT	p.S436C	MADD_uc001neq.2_Missense_Mutation_p.S436C|MADD_uc001nev.1_Missense_Mutation_p.S436C|MADD_uc001nes.1_Missense_Mutation_p.S436C|MADD_uc001net.1_Missense_Mutation_p.S436C|MADD_uc009yln.1_Missense_Mutation_p.S436C|MADD_uc001neu.1_Missense_Mutation_p.S436C|MADD_uc001nex.2_Missense_Mutation_p.S436C|MADD_uc001nez.2_Missense_Mutation_p.S436C|MADD_uc001new.2_Missense_Mutation_p.S436C	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	436					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		GGCCAGCATGAGTCTCAACAC	0.512													13	25					0	0	0.016723	0	0	
SLC22A8	9376	broad.mit.edu	37	11	62762176	62762176	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:62762176C>T	uc001nwo.2	-	8	1190	c.1054G>A	c.(1054-1056)GGA>AGA	p.G352R	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Missense_Mutation_p.G352R|SLC22A8_uc009yom.2_Missense_Mutation_p.G229R|SLC22A8_uc010rmm.1_Missense_Mutation_p.G261R|SLC22A8_uc009yon.2_Missense_Mutation_p.G352R	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	352	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						AGGTTGACTCCAAATTCTTCC	0.527													20	23					0	0	0.016522	0	0	
CDC42BPG	55561	broad.mit.edu	37	11	64603908	64603908	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:64603908T>C	uc001obs.3	-	12	1479	c.1479A>G	c.(1477-1479)CGA>CGG	p.R493R		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	493	Potential.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						cccGGTGAAGTCGGTCAAGCT	0.443											OREG0004017	type=REGULATORY REGION|Gene=CDC42BPG|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	15	34					0	0	0.020292	0	0	
MRPL49	740	broad.mit.edu	37	11	64889890	64889890	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:64889890G>A	uc001oda.1	+	1	163	c.72G>A	c.(70-72)CGG>CGA	p.R24R	FAU_uc001ocx.2_5'Flank|FAU_uc001ocy.1_5'Flank|MRPL49_uc001ocz.1_RNA	NM_004927	NP_004918	Q13405	RM49_HUMAN	mitochondrial ribosomal protein L49	24					translation	mitochondrial ribosome	protein binding|structural constituent of ribosome				0						GCGGGCTACGGCTGTTGGTGA	0.592													10	9					0	0	0.010729	0	0	
ODZ4	26011	broad.mit.edu	37	11	78413244	78413244	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:78413244C>T	uc001ozl.3	-	28	4877	c.4414G>A	c.(4414-4416)GCT>ACT	p.A1472T	ODZ4_uc009yvb.1_Missense_Mutation_p.A56T	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1472	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ACAGCCAAAGCGGTGGCTGAC	0.557													15	19					0	0	0.003163	0	0	
FAT3	120114	broad.mit.edu	37	11	92086032	92086032	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:92086032C>A	uc001pdj.3	+	1	771	c.754C>A	c.(754-756)CTT>ATT	p.L252I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	252	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TACTGCAAAGCTTTATGTTCA	0.403										TCGA Ovarian(4;0.039)			48	61					3.39706e-21	3.67734e-21	0.014410	1	0	
FAT3	120114	broad.mit.edu	37	11	92088462	92088462	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:92088462G>A	uc001pdj.3	+	1	3201	c.3184G>A	c.(3184-3186)GTG>ATG	p.V1062M		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1062	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGGAACAAGCGTGCTGCAGGT	0.498										TCGA Ovarian(4;0.039)			21	28					0	0	0.012319	0	0	
KBTBD3	143879	broad.mit.edu	37	11	105924893	105924893	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr11:105924893G>C	uc001pja.2	-	4	1163	c.523C>G	c.(523-525)CAC>GAC	p.H175D	KBTBD3_uc001pjb.2_Missense_Mutation_p.H175D|KBTBD3_uc009yxm.2_Missense_Mutation_p.H96D	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	171	BACK.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		TGTACAAAGTGTAATGCATGA	0.289													12	19					0	0	0.010729	0	0	
TMTC1	83857	broad.mit.edu	37	12	29757182	29757182	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:29757182C>T	uc001rjb.2	-	7	1329	c.855G>A	c.(853-855)CCG>CCA	p.P285P	TMTC1_uc001riz.2_Silent_p.P42P|TMTC1_uc001rja.2_Silent_p.P129P|TMTC1_uc001rjc.1_Silent_p.P347P	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	393	Helical; (Potential).					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					CTGGAATGAACGGGAACACCA	0.468													16	48					0	0	0.004007	0	0	
SYT10	341359	broad.mit.edu	37	12	33538177	33538177	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:33538177G>A	uc001rll.1	-	4	1424	c.1127C>T	c.(1126-1128)ACG>ATG	p.T376M	SYT10_uc009zju.1_Missense_Mutation_p.T186M	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	376	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					ACGCCCAGCCGTCGGTAGGTA	0.443													24	48					0	0	0.018920	0	0	
KIF21A	55605	broad.mit.edu	37	12	39726475	39726475	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:39726475A>C	uc001rly.2	-	20	2920	c.2774T>G	c.(2773-2775)CTC>CGC	p.L925R	KIF21A_uc001rlv.2_5'Flank|KIF21A_uc001rlw.2_Missense_Mutation_p.L242R|KIF21A_uc001rlx.2_Missense_Mutation_p.L912R|KIF21A_uc001rlz.2_Missense_Mutation_p.L889R|KIF21A_uc010skl.1_Missense_Mutation_p.L912R	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	925					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				GCGCTCAAGGAGCTGCCACTT	0.428													31	39					0	0	0.009535	0	0	
SENP1	29843	broad.mit.edu	37	12	48441861	48441861	+	Silent	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:48441861A>G	uc001rqx.2	-	15	2060	c.1614T>C	c.(1612-1614)GTT>GTC	p.V538V	SENP1_uc001rqw.2_Silent_p.V538V|SENP1_uc001rqy.2_Silent_p.V339V|SENP1_uc001rqz.2_Silent_p.V339V|SENP1_uc009zkx.2_Silent_p.V538V	NM_014554	NP_055369	Q9P0U3	SENP1_HUMAN	sentrin/SUMO-specific protease 1	538	Protease.				activation of caspase activity|induction of apoptosis by extracellular signals|protein desumoylation|proteolysis	cytoplasm|nucleus	endopeptidase activity|SUMO-specific protease activity			pancreas(2)|lung(1)	3		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)				TAAAGTCCACAACCTGAGAAT	0.398													7	10					0	0	0.001984	0	0	
ATP5B	506	broad.mit.edu	37	12	57037231	57037231	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:57037231T>A	uc001slr.2	-	5	853	c.748A>T	c.(748-750)ATG>TTG	p.M250L		NM_001686	NP_001677	P06576	ATPB_HUMAN	mitochondrial ATP synthase beta subunit	250					angiogenesis|ATP hydrolysis coupled proton transport|regulation of intracellular pH|respiratory electron transport chain	cell surface|mitochondrial nucleoid|mitochondrial proton-transporting ATP synthase, catalytic core|plasma membrane	ATP binding|eukaryotic cell surface binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|hydrogen-exporting ATPase activity, phosphorylative mechanism|MHC class I protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)	1						GATTCAATCATTTCATGGTAT	0.433													44	59					0	0	0.014410	0	0	
GRIP1	23426	broad.mit.edu	37	12	66788079	66788079	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:66788079C>T	uc001stk.2	-	16	2123	c.1882G>A	c.(1882-1884)GGG>AGG	p.G628R	GRIP1_uc010sta.1_Missense_Mutation_p.G572R|GRIP1_uc001stj.2_Missense_Mutation_p.G410R|GRIP1_uc001stl.1_Missense_Mutation_p.G520R|GRIP1_uc001stm.2_Missense_Mutation_p.G628R	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	680	PDZ 6.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		AGGGGCCCCCCGTAGCGTTTA	0.408													30	88					0	0	0.006320	0	0	
PTPRB	5787	broad.mit.edu	37	12	70960283	70960283	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:70960283T>A	uc001swb.3	-	13	3212	c.3182A>T	c.(3181-3183)TAC>TTC	p.Y1061F	PTPRB_uc010sto.1_Intron|PTPRB_uc010stp.1_Missense_Mutation_p.Y971F|PTPRB_uc001swc.3_Missense_Mutation_p.Y1279F|PTPRB_uc001swa.3_Missense_Mutation_p.Y1191F|PTPRB_uc001swd.3_Missense_Mutation_p.Y1278F|PTPRB_uc009zrr.1_Missense_Mutation_p.Y1158F	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1061	Fibronectin type-III 12.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTGTATCTTGTATTTCTTGCC	0.443													16	33					0	0	0.004007	0	0	
LRRIQ1	84125	broad.mit.edu	37	12	85441135	85441135	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:85441135C>T	uc001tac.2	+	6	676	c.565C>T	c.(565-567)CTC>TTC	p.L189F	LRRIQ1_uc001tab.1_Missense_Mutation_p.L189F|LRRIQ1_uc001taa.1_Missense_Mutation_p.L189F|LRRIQ1_uc001tad.2_Missense_Mutation_p.L97F	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	189	Glu-rich.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GAAACAAACTCTCAAAGCTCA	0.328													52	43					0	0	0.014410	0	0	
TRPV4	59341	broad.mit.edu	37	12	110221548	110221548	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:110221548G>A	uc001tpj.1	-	15	2589	c.2494C>T	c.(2494-2496)CTG>TTG	p.L832L	TRPV4_uc001tpg.1_Silent_p.L798L|TRPV4_uc001tph.1_Silent_p.L785L|TRPV4_uc001tpi.1_Silent_p.L725L|TRPV4_uc001tpk.1_Silent_p.L832L|TRPV4_uc001tpl.1_Silent_p.L772L	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	832	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TTCTTGTTCAGTTCCACCACG	0.587													10	29					0	0	0.006214	0	0	
CUX2	23316	broad.mit.edu	37	12	111745053	111745053	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:111745053G>A	uc001tsa.1	+	12	1254	c.1101G>A	c.(1099-1101)ACG>ACA	p.T367T		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	367	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AAATTAAAACGGAGCTGAGGT	0.527													12	13					0	0	0.016723	0	0	
DTX1	1840	broad.mit.edu	37	12	113496170	113496170	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:113496170G>C	uc001tuk.1	+	1	509	c.173G>C	c.(172-174)GGT>GCT	p.G58A		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	58	WWE 1.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						GACGCTCGCGGTTCCGTGGTC	0.637													24	44					0	0	0.014323	0	0	
DTX1	1840	broad.mit.edu	37	12	113496241	113496241	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:113496241T>C	uc001tuk.1	+	1	580	c.244T>C	c.(244-246)TTT>CTT	p.F82L		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	82	WWE 1.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						CATGCACCAGTTTCGCCAGGA	0.607													20	46					0	0	0.018920	0	0	
TBX5	6910	broad.mit.edu	37	12	114832618	114832618	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:114832618T>G	uc001tvo.2	-	6	1086	c.591A>C	c.(589-591)AAA>AAC	p.K197N	TBX5_uc001tvp.2_Missense_Mutation_p.K197N|TBX5_uc001tvq.2_Missense_Mutation_p.K147N|TBX5_uc010syv.1_Missense_Mutation_p.K197N	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	197	T-box.				cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		ACGCTGTATTTTTTGAGCCAA	0.403													58	171					0	0	0.014410	0	0	
CCDC64	92558	broad.mit.edu	37	12	120530908	120530908	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:120530908G>A	uc001txl.1	+	9	1690	c.1665G>A	c.(1663-1665)GGG>GGA	p.G555G	CCDC64_uc009zwv.1_RNA|CCDC64_uc010sze.1_Silent_p.G226G|CCDC64_uc010szf.1_Silent_p.G252G	NM_207311	NP_997194	Q6ZP65	BICR1_HUMAN	coiled-coil domain containing 64	555					Golgi to secretory granule transport|neuron projection development	centrosome	dynactin binding|Rab GTPase binding			ovary(2)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGGGCGGGGGGATGAGCCCA	0.592													9	31					0	0	0.004482	0	0	
FZD10	11211	broad.mit.edu	37	12	130648561	130648561	+	Silent	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:130648561C>A	uc001uii.2	+	1	1530	c.1074C>A	c.(1072-1074)GCC>GCA	p.A358A	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	358	Helical; Name=4; (Potential).				brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		ACCTGGCAGCCTGGGCCATCC	0.662													16	49					4.75885e-15	5.11771e-15	0.004990	1	0	
RIMBP2	23504	broad.mit.edu	37	12	130923044	130923044	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr12:130923044G>A	uc001uil.2	-	9	1635	c.1471C>T	c.(1471-1473)CAA>TAA	p.Q491*	RIMBP2_uc001uim.2_Nonsense_Mutation_p.Q399*|RIMBP2_uc001uin.1_Nonsense_Mutation_p.Q150*	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	491	Fibronectin type-III 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GTAACATCTTGTGGGGGTGCT	0.667													4	5					0	0	0.014758	0	0	
FRY	10129	broad.mit.edu	37	13	32868606	32868606	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:32868606C>T	uc001utx.2	+	60	9178	c.8682C>T	c.(8680-8682)TCC>TCT	p.S2894S	FRY_uc010tdw.1_RNA|FRY_uc001utz.2_Silent_p.S425S|FRY_uc010tdx.1_Silent_p.S264S	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2894					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GCGCGTGGTCCGAGCCCACCT	0.547													21	30					0	0	0.008871	0	0	
SMAD9	4093	broad.mit.edu	37	13	37439852	37439852	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:37439852C>T	uc001uvw.2	-	5	1168	c.825G>A	c.(823-825)TCG>TCA	p.S275S	SMAD9_uc001uvx.2_Silent_p.S238S|SMAD9_uc010tep.1_Silent_p.S68S	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	275	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		AGTAGGCGACCGAGCACCAGT	0.507													14	27					0	0	0.020292	0	0	
CAB39L	81617	broad.mit.edu	37	13	49906110	49906110	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:49906110G>A	uc001vcw.2	-	8	1305	c.807C>T	c.(805-807)ATC>ATT	p.I269I	CAB39L_uc001vcx.2_Silent_p.I269I|CAB39L_uc010adf.2_Silent_p.I266I	NM_030925	NP_112187	Q9H9S4	CB39L_HUMAN	calcium binding protein 39-like	269					cell cycle arrest|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol	protein binding				0		Lung NSC(96;2.11e-05)|Breast(56;0.00017)|Prostate(109;0.00314)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.66e-09)|COAD - Colon adenocarcinoma(199;0.226)		CTTCAAACTGGATGTTGGGAC	0.418													51	68					0	0	0.014410	0	0	
C13orf1	57213	broad.mit.edu	37	13	50495695	50495695	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:50495695C>T	uc001vdl.2	-	4	674	c.412G>A	c.(412-414)GAA>AAA	p.E138K	C13orf1_uc001vdm.2_Missense_Mutation_p.E99K|C13orf1_uc010tgm.1_RNA|C13orf1_uc010adj.2_Missense_Mutation_p.E138K	NM_020456	NP_065189	Q5W111	SPRY7_HUMAN	chromosome 13 open reading frame 1 isoform 1	138	B30.2/SPRY.										0		Lung NSC(96;7.5e-06)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Acute lymphoblastic leukemia(7;0.117)		GBM - Glioblastoma multiforme(99;1.72e-10)|COAD - Colon adenocarcinoma(199;0.208)		ACATTTAATTCGACATGGTCA	0.368													23	24					0	0	0.018920	0	0	
THSD1P1	374500	broad.mit.edu	37	13	52854009	52854009	+	RNA	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:52854009C>A	uc001vgm.1	-	6		c.517G>T								Homo sapiens cDNA FLJ14630 fis, clone NT2RP2000459.												0						ACTGGCCTCCCGAAGATGGAA	0.303													8	12					9.70103e-10	1.02313e-09	0.008291	1	0	
PCDH20	64881	broad.mit.edu	37	13	61985915	61985915	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:61985915C>T	uc001vid.3	-	2	2681	c.2317G>A	c.(2317-2319)GAC>AAC	p.D773N	PCDH20_uc010thj.1_Missense_Mutation_p.D773N	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	746	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		ATGCCTGTGTCTTTGTCGACA	0.453													24	53					0	0	0.018920	0	0	
KLF12	11278	broad.mit.edu	37	13	74420392	74420392	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:74420392G>A	uc001vjf.2	-	4	464	c.242C>T	c.(241-243)CCA>CTA	p.P81L	KLF12_uc010aeq.2_Missense_Mutation_p.P81L|KLF12_uc001vjg.3_Missense_Mutation_p.P81L	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12	81					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		CAAGTCCACTGGCTCAGTTTG	0.498													25	58					0	0	0.005443	0	0	
SLITRK1	114798	broad.mit.edu	37	13	84454002	84454002	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:84454002C>T	uc001vlk.2	-	1	2527	c.1641G>A	c.(1639-1641)TTG>TTA	p.L547L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	547	LRRCT 2.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CTTCGGAACCCAAGCGTTCTG	0.532													5	40					0	0	0.014758	0	0	
SLITRK5	26050	broad.mit.edu	37	13	88329436	88329436	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:88329436T>A	uc001vln.2	+	2	2012	c.1793T>A	c.(1792-1794)TTC>TAC	p.F598Y	SLITRK5_uc010tic.1_Missense_Mutation_p.F357Y	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	598	LRRCT 2.|Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCCAAAAAATTCGCTGAGACC	0.542													58	87					0	0	0.014410	0	0	
FAM155A	728215	broad.mit.edu	37	13	108518853	108518853	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:108518853T>C	uc001vql.2	-	1	608	c.92A>G	c.(91-93)GAT>GGT	p.D31G		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	31						integral to membrane	binding			skin(1)	1						CCTCTCGGAATCGATGAACGG	0.527													51	113					0	0	0.014410	0	0	
ATP11A	23250	broad.mit.edu	37	13	113470426	113470426	+	Silent	SNP	C	T	T	rs140428971		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr13:113470426C>T	uc001vsi.3	+	6	559	c.471C>T	c.(469-471)GAC>GAT	p.D157D	ATP11A_uc001vsj.3_Silent_p.D157D|ATP11A_uc001vsm.1_Silent_p.D33D	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	157	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				TTAAGGAGGACGAGACCTTTC	0.557													15	30					0	0	0.004007	0	0	
NFATC4	4776	broad.mit.edu	37	14	24845265	24845265	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:24845265C>T	uc001wpc.2	+	8	2335	c.2014C>T	c.(2014-2016)CGG>TGG	p.R672W	NFATC4_uc010tok.1_Missense_Mutation_p.R735W|NFATC4_uc010tol.1_Missense_Mutation_p.R735W|NFATC4_uc010alr.2_Missense_Mutation_p.R735W|NFATC4_uc010tom.1_Missense_Mutation_p.R685W|NFATC4_uc010ton.1_Missense_Mutation_p.R685W|NFATC4_uc010too.1_Missense_Mutation_p.R685W|NFATC4_uc010alt.2_Missense_Mutation_p.R704W|NFATC4_uc010top.1_Missense_Mutation_p.R704W|NFATC4_uc010toq.1_Missense_Mutation_p.R704W|NFATC4_uc010tor.1_Missense_Mutation_p.R672W|NFATC4_uc010tos.1_Missense_Mutation_p.R602W|NFATC4_uc010tot.1_Missense_Mutation_p.R660W|NFATC4_uc010tou.1_Missense_Mutation_p.R602W|NFATC4_uc010tov.1_Missense_Mutation_p.R660W|NFATC4_uc010tow.1_Missense_Mutation_p.R602W|NFATC4_uc010alv.2_Missense_Mutation_p.R660W|NFATC4_uc010tox.1_Missense_Mutation_p.R602W|NFATC4_uc001wpd.2_Missense_Mutation_p.R207W|NFATC4_uc010toy.1_Missense_Mutation_p.R207W|NFATC4_uc010toz.1_Missense_Mutation_p.R207W|NFATC4_uc010tpa.1_5'UTR|NFATC4_uc010tpb.1_5'UTR	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	672	Nuclear localization signal.|IPT/TIG.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CTCCAATGGGCGGAGGAAACG	0.567													48	65					0	0	0.014410	0	0	
PLEKHH1	57475	broad.mit.edu	37	14	68045912	68045912	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:68045912G>A	uc001xjl.1	+	21	3053	c.2911G>A	c.(2911-2913)GGG>AGG	p.G971R	PLEKHH1_uc010tsw.1_Missense_Mutation_p.G539R|PLEKHH1_uc001xjn.1_Missense_Mutation_p.G486R|PLEKHH1_uc010tsx.1_5'UTR|PLEKHH1_uc001xjo.1_5'Flank|PLEKHH1_uc001xjp.1_5'Flank	NM_020715	NP_065766	Q9ULM0	PKHH1_HUMAN	pleckstrin homology domain containing, family H	971	MyTH4.					cytoskeleton	binding				0				all cancers(60;0.000771)|OV - Ovarian serous cystadenocarcinoma(108;0.00502)|BRCA - Breast invasive adenocarcinoma(234;0.011)		CCTGCGGACCGGGGAGCGGGA	0.602													3	8					0	0	0.004672	0	0	
ZFYVE1	53349	broad.mit.edu	37	14	73459883	73459883	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:73459883G>A	uc001xnm.2	-	4	1811	c.1171C>T	c.(1171-1173)CGG>TGG	p.R391W	ZFYVE1_uc010arj.2_Missense_Mutation_p.R391W	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	391						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		CCCGGGTGCCGGGGAGAACGG	0.567													18	34					0	0	0.006122	0	0	
BCL11B	64919	broad.mit.edu	37	14	99641074	99641074	+	Missense_Mutation	SNP	G	A	A	rs115625258	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:99641074G>A	uc001yga.2	-	4	2366	c.2099C>T	c.(2098-2100)GCG>GTG	p.A700V	BCL11B_uc001ygb.2_Missense_Mutation_p.A629V	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	700						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		CGGGATGAGCGCGGCGGGCGG	0.701			T	TLX3	T-ALL								8	10					0	0	0.006214	0	0	
YY1	7528	broad.mit.edu	37	14	100728767	100728767	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:100728767A>G	uc001ygy.1	+	2	1286	c.806A>G	c.(805-807)GAC>GGC	p.D269G		NM_003403	NP_003394	P25490	TYY1_HUMAN	YY1 transcription factor	269	Involved in nuclear matrix association.				cell differentiation|cellular response to UV|double-strand break repair via homologous recombination|negative regulation of transcription from RNA polymerase II promoter|response to UV-C|spermatogenesis	Ino80 complex|nuclear matrix|plasma membrane	four-way junction DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding				0		Melanoma(154;0.152)				CCTGGCATTGACCTCTCAGAT	0.393													24	35					0	0	0.018920	0	0	
AHNAK2	113146	broad.mit.edu	37	14	105412335	105412335	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:105412335C>T	uc010axc.1	-	7	9573	c.9453G>A	c.(9451-9453)CCG>CCA	p.P3151P	AHNAK2_uc001ypx.2_Silent_p.P3051P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3151						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCGAACGACGGCATCTTGA	0.602													128	207					0	0	0.014410	0	0	
ADAM6	8755	broad.mit.edu	37	14	106110112	106110112	+	RNA	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106110112T>C	uc010tyt.1	-	3642		c.61139A>G			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						CTCCCGTGGCTTTGTCTTGGC	0.602													42	71					0	0	0.008740	0	0	
ADAM6	8755	broad.mit.edu	37	14	106318499	106318499	+	RNA	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106318499G>A	uc010tyt.1	-	3603		c.56635C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GGTGACGGTGGTACTGTAGAA	0.652													5	1					0	0	0.001168	0	0	
ADAM6	8755	broad.mit.edu	37	14	106805256	106805256	+	RNA	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106805256G>A	uc010tyt.1	-	360		c.13952C>T			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						ACAGAGCTCAGCTTCAGGGAG	0.537													33	18					0	0	0.006230	0	0	
ADAM6	8755	broad.mit.edu	37	14	106805301	106805301	+	RNA	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106805301C>T	uc010tyt.1	-	360		c.13907G>A			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						GATATGGTAACTCGACTCTTG	0.547													41	13					0	0	0.007835	0	0	
ADAM6	8755	broad.mit.edu	37	14	106805493	106805493	+	RNA	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106805493G>T	uc010tyt.1	-	360		c.13715C>A			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						CCCGACTCCTGCAGCTGCACC	0.592													10	5					1.02788e-11	1.08757e-11	0.004990	1	0	
ADAM6	8755	broad.mit.edu	37	14	106829738	106829738	+	RNA	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106829738C>T	uc010tyt.1	-	323		c.12767G>A			uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						GATTGATTTCCCCAATCCACT	0.552													48	65					0	0	0.014410	0	0	
ADAM6	8755	broad.mit.edu	37	14	106829780	106829781	+	RNA	DNP	GC	CT	CT	rs11546809		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106829780_106829781GC>CT	uc010tyt.1	-	323		c.12724_12725GC>AG			uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						GGCGGATCCAGCTCCAGTAGTA	0.584													33	34					0	0	0.004672	0	0	
ADAM6	8755	broad.mit.edu	37	14	106829800	106829800	+	RNA	SNP	A	G	G	rs3814930		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:106829800A>G	uc010tyt.1	-	323		c.12705T>C			uc001ysx.1_RNA					Parts of antibodies, mostly variable regions.												0						TAACCACTGAAGGACCCACCA	0.597													28	27					0	0	0.006320	0	0	
ADAM6	8755	broad.mit.edu	37	14	107179102	107179102	+	RNA	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:107179102C>T	uc010tyt.1	-	32		c.2136G>A								Parts of antibodies, mostly variable regions.												0						CAGGACCAGACTCCCTCAAGG	0.507													11	15					0	0	0.010729	0	0	
ADAM6	8755	broad.mit.edu	37	14	107179262	107179262	+	RNA	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:107179262T>G	uc010tyt.1	-	31		c.2062A>C								Parts of antibodies, mostly variable regions.												0						AGTATGTCCATGGTGGAGAGC	0.527													4	14					0	0	0.009096	0	0	
OR4M2	390538	broad.mit.edu	37	15	22368747	22368747	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:22368747C>T	uc010tzu.1	+	1	172	c.172C>T	c.(172-174)CCT>TCT	p.P58S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTGACCTCTCCTATGTATTT	0.398													96	423					0	0	0.014410	0	0	
TJP1	7082	broad.mit.edu	37	15	30010720	30010720	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:30010720G>A	uc001zcr.2	-	21	4101	c.3626C>T	c.(3625-3627)TCT>TTT	p.S1209F	TJP1_uc010azl.2_Missense_Mutation_p.S1197F|TJP1_uc001zcq.2_Missense_Mutation_p.S1133F|TJP1_uc001zcs.2_Missense_Mutation_p.S1129F	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	1209					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		ACCTGCTCTAGAGGTAAATCC	0.522													24	39					0	0	0.016522	0	0	
PLCB2	5330	broad.mit.edu	37	15	40590080	40590080	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:40590080G>A	uc001zld.2	-	12	1537	c.1236C>T	c.(1234-1236)GAC>GAT	p.D412D	PLCB2_uc010bbo.2_Silent_p.D412D|PLCB2_uc010ucm.1_Silent_p.D412D	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	412	PI-PLC X-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		ATACGCACGAGTCCACATGGT	0.557													9	17					0	0	0.008291	0	0	
MGA	23269	broad.mit.edu	37	15	42003115	42003115	+	Nonsense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:42003115T>G	uc001zog.1	+	8	2743	c.2652T>G	c.(2650-2652)TAT>TAG	p.Y884*	MGA_uc010ucy.1_Nonsense_Mutation_p.Y884*|MGA_uc010ucz.1_Nonsense_Mutation_p.Y884*	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	884						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CTACCTCTTATTCTTTGAAAC	0.418													41	64					0	0	0.008740	0	0	
MAPKBP1	23005	broad.mit.edu	37	15	42111038	42111038	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:42111038G>A	uc001zok.3	+	21	2478	c.2192G>A	c.(2191-2193)CGC>CAC	p.R731H	MAPKBP1_uc001zoj.3_Missense_Mutation_p.R725H|MAPKBP1_uc010bcj.2_Missense_Mutation_p.R232H|MAPKBP1_uc010bci.2_Missense_Mutation_p.R725H|MAPKBP1_uc010udb.1_Missense_Mutation_p.R564H|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_Missense_Mutation_p.R232H	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	731	WD 12.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		TTTGTGTGGCGCCTGAGCTCT	0.592													22	24					0	0	0.016522	0	0	
WDR76	79968	broad.mit.edu	37	15	44120184	44120184	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:44120184C>T	uc001zti.1	+	2	105	c.82C>T	c.(82-84)CAA>TAA	p.Q28*		NM_024908	NP_079184	Q9H967	WDR76_HUMAN	WD repeat domain 76	28											0		all_cancers(109;3.26e-11)|all_epithelial(112;4.82e-09)|Lung NSC(122;1.61e-06)|all_lung(180;1.5e-05)|Melanoma(134;0.0417)		all cancers(107;3.78e-21)|GBM - Glioblastoma multiforme(94;5.04e-07)		TAAAGAAAATCAAAACATCGC	0.358													12	15					0	0	0.016723	0	0	
SIN3A	25942	broad.mit.edu	37	15	75703974	75703974	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:75703974C>T	uc002bai.2	-	6	1126	c.867G>A	c.(865-867)TCG>TCA	p.S289S	SIN3A_uc002baj.2_Silent_p.S289S|SIN3A_uc010uml.1_Silent_p.S289S	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	289	Interaction with REST (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						CCGTTCCCAACGAGATTGTCA	0.522													61	85					0	0	0.014410	0	0	
LOC645752	645752	broad.mit.edu	37	15	78211370	78211370	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:78211370C>T	uc010bky.2	-	11	1161	c.397G>A	c.(397-399)GAG>AAG	p.E133K		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CGAAGCCTCTCGTTTTGTTCA	0.592													49	107					0	0	0.014410	0	0	
RLBP1	6017	broad.mit.edu	37	15	89760390	89760390	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:89760390G>A	uc002bnl.2	-	5	687	c.307C>T	c.(307-309)CGG>TGG	p.R103W		NM_000326	NP_000317	P12271	RLBP1_HUMAN	retinaldehyde binding protein 1	103					response to stimulus|visual perception|vitamin A metabolic process	cytoplasm|soluble fraction	retinol binding|transporter activity			central_nervous_system(1)	1	Lung NSC(78;0.0472)|all_lung(78;0.089)				Vitamin A(DB00162)	TTGAACTTCCGTGCGCGGATG	0.672													12	20					0	0	0.010729	0	0	
TRAF7	84231	broad.mit.edu	37	16	2223541	2223541	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr16:2223541G>A	uc002cow.2	+	11	1171	c.1072G>A	c.(1072-1074)GCA>ACA	p.A358T		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	358					activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						CCGGCGGGACGCATCCATGTT	0.672													15	17					0	0	0.003163	0	0	
SYT17	51760	broad.mit.edu	37	16	19278368	19278368	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr16:19278368C>T	uc002dfw.2	+	8	1726	c.1395C>T	c.(1393-1395)CGC>CGT	p.R465R	SYT17_uc002dfx.2_Silent_p.R404R|SYT17_uc002dfy.2_Silent_p.R461R	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	465						membrane|synaptic vesicle	transporter activity			ovary(1)	1						AGTGTGACCGCGTGTCTCCTG	0.542													9	11					0	0	0.004482	0	0	
GPR139	124274	broad.mit.edu	37	16	20043163	20043163	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr16:20043163A>T	uc002dgu.1	-	2	1118	c.956T>A	c.(955-957)TTT>TAT	p.F319Y	GPR139_uc010vaw.1_Missense_Mutation_p.F226Y	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	319	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						TGTTATGGAAAAGTTATGATT	0.478													32	53					0	0	0.017118	0	0	
CORO1A	11151	broad.mit.edu	37	16	30199729	30199729	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr16:30199729C>A	uc002dww.2	+	10	1235	c.1113C>A	c.(1111-1113)GAC>GAA	p.D371E	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CORO1A_uc010bzq.2_Missense_Mutation_p.D371E|CORO1A_uc010bzr.2_Intron|CORO1A_uc002dwx.2_Missense_Mutation_p.D265E|CORO1A_uc002dwy.1_3'UTR|LOC606724_uc002dwz.1_5'Flank	NM_007074	NP_009005	P31146	COR1A_HUMAN	coronin, actin binding protein, 1A	371					cell-substrate adhesion|innate immune response|leukocyte chemotaxis|negative regulation of actin nucleation|phagolysosome assembly|positive chemotaxis|regulation of cell shape|uropod organization	actin filament|cortical actin cytoskeleton|lamellipodium|phagocytic cup|phagocytic vesicle membrane	actin filament binding|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein homodimerization activity				0						CAGGGCCCGACCCTGCCCTCA	0.662													34	49					2.48696e-23	2.70107e-23	0.015359	1	0	
MT1M	4499	broad.mit.edu	37	16	56667308	56667308	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr16:56667308T>A	uc002ejn.2	+	2	195	c.85T>A	c.(85-87)TGC>AGC	p.C29S	MT1A_uc002eji.2_Intron|MT1M_uc010vhe.1_RNA|uc002ejo.1_5'Flank|uc002ejp.1_5'Flank	NM_176870	NP_789846	Q8N339	MT1M_HUMAN	metallothionein 1M	29	Beta.	Divalent metal cation; cluster B.					metal ion binding			ovary(1)	1						ATGCACCTCCTGCAAGAAGAG	0.587													33	44					0	0	0.010818	0	0	
ANKRD11	29123	broad.mit.edu	37	16	89337295	89337295	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr16:89337295C>T	uc002fmx.1	-	12	8197	c.7736G>A	c.(7735-7737)CGC>CAC	p.R2579H	ANKRD11_uc002fmy.1_Missense_Mutation_p.R2579H|uc002fmz.1_RNA	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2579						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		GAAACGGTCGCGCACTGACTT	0.597													10	17					0	0	0.006214	0	0	
TNFSF12-TNFSF13	407977	broad.mit.edu	37	17	7463198	7463198	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:7463198G>A	uc002ghi.1	+	8	668	c.613G>A	c.(613-615)GCC>ACC	p.A205T	SENP3_uc002ghm.2_5'Flank|TNFSF13_uc002ghj.2_Missense_Mutation_p.A125T|TNFSF13_uc002ghk.2_Missense_Mutation_p.A125T|TNFSF13_uc002ghl.2_Intron|TNFSF13_uc010cmk.2_Missense_Mutation_p.A98T|TNFSF13_uc010vua.1_Missense_Mutation_p.A97T	NM_172089	NP_742086	Q8IZK7	Q8IZK7_HUMAN	TNFSF12-TNFSF13 protein	205					immune response	extracellular space|membrane	cytokine activity|tumor necrosis factor receptor binding				0		Prostate(122;0.157)				TCCCATTAACGCCACCTCCAA	0.557											OREG0024138	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	40					0	0	0.004990	0	0	
TP53	7157	broad.mit.edu	37	17	7577556	7577556	+	Missense_Mutation	SNP	C	T	T	rs121912655		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:7577556C>T	uc002gim.2	-	7	919	c.725G>A	c.(724-726)TGC>TAC	p.C242Y	TP53_uc002gig.1_Missense_Mutation_p.C242Y|TP53_uc002gih.2_Missense_Mutation_p.C242Y|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.C110Y|TP53_uc010cng.1_Missense_Mutation_p.C110Y|TP53_uc002gii.1_Missense_Mutation_p.C110Y|TP53_uc010cnh.1_Missense_Mutation_p.C242Y|TP53_uc010cni.1_Missense_Mutation_p.C242Y|TP53_uc002gij.2_Missense_Mutation_p.C242Y|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.C149Y|TP53_uc002gio.2_Missense_Mutation_p.C110Y	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	242	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).	Zinc.	C -> F (in sporadic cancers; somatic mutation).|C -> G (in sporadic cancers; somatic mutation).|C -> S (in sporadic cancers; somatic mutation).|C -> R (in sporadic cancers; somatic mutation).|C -> W (in sporadic cancers; somatic mutation).|C -> Y (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.C242F(63)|p.C242Y(37)|p.C242S(25)|p.C242fs*5(16)|p.C242R(11)|p.C242W(7)|p.0?(7)|p.N239_C242delNSSC(3)|p.C242*(3)|p.C242C(2)|p.C242G(2)|p.C242fs*20(1)|p.C242fs*23(1)|p.Y236_M243delYMCNSSCM(1)|p.C242_M246>L(1)|p.N239fs*4(1)|p.C238_M246delCNSSCMGGM(1)|p.S241_C242insX(1)|p.C238fs*21(1)|p.C242fs*98(1)|p.H233_C242del10(1)|p.N239_C242>S(1)|p.S241_G245delSCMGG(1)|p.N239_C242del(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCGCCCATGCAGGAACTGTT	0.577		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			16	17					0	0	0.004990	0	0	
LOC162632	162632	broad.mit.edu	37	17	16705600	16705600	+	RNA	SNP	A	G	G	rs112562242	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:16705600A>G	uc010cpj.1	+	21		c.4917A>G			LOC162632_uc010cpk.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						AATTGACACCAACTCTGCCTA	0.423													7	38					0	0	0.016723	0	0	
Unknown	0	broad.mit.edu	37	17	16724007	16724007	+	RNA	SNP	G	A	A	rs8082484		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:16724007G>A	uc002gqq.1	-	2		c.660C>T								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		CCAGACGGGCGTTGTCAATCT	0.522													14	1					0	0	0.003163	0	0	
TMEM97	27346	broad.mit.edu	37	17	26646362	26646362	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:26646362G>C	uc002hat.2	+	1	242	c.97G>C	c.(97-99)GTG>CTG	p.V33L		NM_014573	NP_055388	Q5BJF2	TMM97_HUMAN	transmembrane protein 97	33	Extracellular (Potential).				cholesterol homeostasis|regulation of cell growth	integral to membrane|lysosome|nuclear membrane|plasma membrane|rough endoplasmic reticulum	protein binding				0	all_lung(13;0.000238)|Lung NSC(42;0.000789)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		CCTGCAGGCGGTGCTGCCGCG	0.687													5	22					0	0	0.014758	0	0	
SLC13A2	9058	broad.mit.edu	37	17	26817568	26817568	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:26817568G>A	uc002hbh.2	+	3	395	c.328G>A	c.(328-330)GCC>ACC	p.A110T	SLC13A2_uc010wal.1_Missense_Mutation_p.A67T|SLC13A2_uc010wam.1_Missense_Mutation_p.A66T|SLC13A2_uc010wan.1_Missense_Mutation_p.A159T|SLC13A2_uc010wao.1_Missense_Mutation_p.A67T|SLC13A2_uc002hbi.2_Missense_Mutation_p.A39T	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	110						integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	TAAACGCATCGCCCTCCGTGT	0.607													30	67					0	0	0.009535	0	0	
GRN	2896	broad.mit.edu	37	17	42426659	42426659	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:42426659C>T	uc002igp.1	+	2	346	c.127C>T	c.(127-129)CGT>TGT	p.R43C	GRN_uc002igq.1_Missense_Mutation_p.R43C|GRN_uc002igr.1_5'Flank	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	43					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		CAGCTGCTGCCGTCCCCTTCT	0.637													38	4					0	0	0.021022	0	0	
C17orf82	388407	broad.mit.edu	37	17	59489668	59489668	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:59489668G>A	uc002izh.1	+	1	557	c.332G>A	c.(331-333)GGT>GAT	p.G111D		NM_203425	NP_982249	Q86X59	CQ082_HUMAN	hypothetical protein LOC388407	111											0						GCCCGGGGCGGTTTTGCACTT	0.667											OREG0024630	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	6					0	0	0.004007	0	0	
GNA13	10672	broad.mit.edu	37	17	63052588	63052588	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:63052588T>C	uc002jfc.2	-	1	333	c.124A>G	c.(124-126)AAG>GAG	p.K42E	GNA13_uc010wqh.1_5'Flank	NM_006572	NP_006563	Q14344	GNA13_HUMAN	guanine nucleotide binding protein (G protein),	42					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase D activity|cellular component movement|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex|melanosome	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity|type 1 angiotensin receptor binding				0						ACATAGGTCTTTTCCCGAGAC	0.622													97	28					0	0	0.014410	0	0	
GNA13	10672	broad.mit.edu	37	17	63052626	63052626	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:63052626C>T	uc002jfc.2	-	1	295	c.86G>A	c.(85-87)CGC>CAC	p.R29H	GNA13_uc010wqh.1_5'Flank	NM_006572	NP_006563	Q14344	GNA13_HUMAN	guanine nucleotide binding protein (G protein),	29					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase D activity|cellular component movement|platelet activation|Rho protein signal transduction	brush border membrane|heterotrimeric G-protein complex|melanosome	D5 dopamine receptor binding|G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|signal transducer activity|type 1 angiotensin receptor binding				0						CTTGGACTTGCGTTGCTGCTC	0.597													103	28					0	0	0.014410	0	0	
GRB2	2885	broad.mit.edu	37	17	73389691	73389691	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:73389691A>C	uc002jnx.3	-	2	376	c.19T>G	c.(19-21)TAT>GAT	p.Y7D	GRB2_uc002jny.3_Missense_Mutation_p.Y7D	NM_002086	NP_002077	P62993	GRB2_HUMAN	growth factor receptor-bound protein 2 isoform	7	SH3 1.				axon guidance|blood coagulation|cell junction assembly|cell-cell signaling|cellular response to ionizing radiation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|receptor internalization|signal transduction in response to DNA damage|T cell costimulation	cytosol|Golgi apparatus	epidermal growth factor receptor binding|insulin receptor substrate binding|SH3/SH2 adaptor activity			ovary(3)	3	all_cancers(13;5.44e-09)|all_epithelial(9;1.1e-09)|Breast(9;1.85e-09)|all_lung(278;0.222)		all cancers(21;1.09e-07)|Epithelial(20;1.23e-06)|Lung(188;0.185)		Pegademase bovine(DB00061)	TTGAAGTCATATTTGGCGATG	0.562													107	20					0	0	0.014410	0	0	
SLC16A3	9123	broad.mit.edu	37	17	80194605	80194605	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr17:80194605G>A	uc002kea.2	+	3	363	c.224G>A	c.(223-225)GGT>GAT	p.G75D	SLC16A3_uc002kee.2_Missense_Mutation_p.G75D|SLC16A3_uc002keb.2_Missense_Mutation_p.G75D|SLC16A3_uc002kec.2_Missense_Mutation_p.G75D|SLC16A3_uc002ked.2_Missense_Mutation_p.G75D	NM_001042422	NP_001035887	O15427	MOT4_HUMAN	solute carrier family 16, member 3	75	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	actin cytoskeleton|integral to plasma membrane|membrane fraction|nuclear membrane	secondary active monocarboxylate transmembrane transporter activity|symporter activity			upper_aerodigestive_tract(1)|lung(1)	2	Breast(20;0.00285)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.227)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0149)		Pyruvic acid(DB00119)	CCCTCTCCAGGTCCGCTCTGC	0.682											OREG0024821	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	35					0	0	0.005443	0	0	
PTPRM	5797	broad.mit.edu	37	18	7926570	7926570	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr18:7926570G>T	uc002knn.3	+	5	1055	c.552G>T	c.(550-552)AGG>AGT	p.R184S	PTPRM_uc010dkv.2_Missense_Mutation_p.R184S	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	184	MAM.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				ATGTAGCCAGGACTCCTCACT	0.418													16	29					4.14922e-12	4.40435e-12	0.004007	1	0	
ABHD3	171586	broad.mit.edu	37	18	19283682	19283682	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr18:19283682C>T	uc002ktl.2	-	2	329	c.189G>A	c.(187-189)GAG>GAA	p.E63E	ABHD3_uc002ktm.2_Silent_p.E63E|ABHD3_uc010xao.1_Intron|MIB1_uc002ktp.2_5'Flank|ABHD3_uc002kto.2_Silent_p.E63E	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	63						integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						GGCTGAAACTCTCACCCCCGG	0.547													17	29					0	0	0.004990	0	0	
RIT2	6014	broad.mit.edu	37	18	40323568	40323568	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr18:40323568G>A	uc002lav.2	-	5	717	c.544C>T	c.(544-546)CGC>TGC	p.R182C	RIT2_uc010dnf.2_3'UTR	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	182					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TCCTTCTTGCGAATTTCCCTC	0.413													30	47					0	0	0.008361	0	0	
DOT1L	84444	broad.mit.edu	37	19	2191099	2191099	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:2191099C>T	uc002lvb.3	+	5	389	c.353C>T	c.(352-354)TCG>TTG	p.S118L		NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase	118						nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TACAACCACTCGGTGACCGAC	0.617													14	22					0	0	0.020292	0	0	
ZNF77	58492	broad.mit.edu	37	19	2934551	2934551	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:2934551A>T	uc002lws.3	-	4	705	c.574T>A	c.(574-576)TGC>AGC	p.C192S		NM_021217	NP_067040	Q15935	ZNF77_HUMAN	zinc finger protein 77	192					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|GBM - Glioblastoma multiforme(1328;2.11e-07)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.174)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGTCCTGGCAATTACAGGGT	0.473													34	56					0	0	0.015359	0	0	
CD209	30835	broad.mit.edu	37	19	7809857	7809857	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:7809857C>G	uc002mht.2	-	5	937	c.870G>C	c.(868-870)CAG>CAC	p.Q290H	CD209_uc010xju.1_Missense_Mutation_p.Q129H|CD209_uc010dvp.2_Missense_Mutation_p.Q266H|CD209_uc002mhr.2_Missense_Mutation_p.Q266H|CD209_uc002mhs.2_Missense_Mutation_p.Q220H|CD209_uc002mhu.2_Missense_Mutation_p.Q198H|CD209_uc010dvq.2_Missense_Mutation_p.Q290H|CD209_uc002mhq.2_Missense_Mutation_p.Q290H|CD209_uc002mhv.2_Missense_Mutation_p.Q266H|CD209_uc002mhx.2_Missense_Mutation_p.Q246H|CD209_uc002mhw.2_Missense_Mutation_p.Q154H|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	290	Extracellular (Probable).|C-type lectin.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						TTACGACGAGCTGGGCCCCCA	0.582													20	34					0	0	0.010504	0	0	
MYO1F	4542	broad.mit.edu	37	19	8613174	8613174	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:8613174G>C	uc002mkg.2	-	11	1243	c.1129C>G	c.(1129-1131)CAG>GAG	p.Q377E	MYO1F_uc002mkh.2_Missense_Mutation_p.P378R	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	377	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						TACTCTTCCTGGGGTTTCTGC	0.607													21	32					0	0	0.008871	0	0	
MUC16	94025	broad.mit.edu	37	19	8995977	8995977	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:8995977C>T	uc002mkp.2	-	62	41468	c.41264G>A	c.(41263-41265)CGG>CAG	p.R13755Q	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R572Q|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13757	Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACAGAGCTCCGATGAGTGAA	0.537													12	31					0	0	0.016723	0	0	
ZNF700	90592	broad.mit.edu	37	19	12060673	12060673	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:12060673A>T	uc002msu.2	+	4	1960	c.1834A>T	c.(1834-1836)AGG>TGG	p.R612W	ZNF700_uc010xme.1_Missense_Mutation_p.R630W|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	612	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCATGGTAGGACTCACAC	0.473													42	62					0	0	0.009718	0	0	
NOTCH3	4854	broad.mit.edu	37	19	15299139	15299139	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:15299139C>T	uc002nan.2	-	9	1475	c.1399G>A	c.(1399-1401)GAG>AAG	p.E467K	NOTCH3_uc002nao.1_Missense_Mutation_p.E467K	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	467	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			ATGTCCACCTCGCAATAGGTT	0.587													3	14					0	0	0.009096	0	0	
SCN1B	6324	broad.mit.edu	37	19	35524615	35524615	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:35524615G>C	uc002nxp.2	+	3	611	c.420G>C	c.(418-420)AAG>AAC	p.K140N	SCN1B_uc002nxo.1_Missense_Mutation_p.K140N|SCN1B_uc010xsg.1_Splice_Site_p.K70_splice	NM_001037	NP_001028	Q07699	SCN1B_HUMAN	sodium channel, voltage-gated, type I, beta	140	Extracellular (Potential).|Ig-like C2-type.				axon guidance|synaptic transmission	integral to membrane	voltage-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			GCGTCGTCAAGAAGATCCACA	0.567													39	67					0	0	0.006999	0	0	
MLL4	9757	broad.mit.edu	37	19	36214856	36214856	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:36214856C>T	uc010eei.2	+	9	3282	c.3282C>T	c.(3280-3282)GAC>GAT	p.D1094D		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1094					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ATTCGGATGACTCGGAGCCCG	0.592													6	9					0	0	0.001984	0	0	
FCGBP	8857	broad.mit.edu	37	19	40421393	40421393	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:40421393G>A	uc002omp.3	-	5	2536	c.2528C>T	c.(2527-2529)GCG>GTG	p.A843V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	843	Cys-rich.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCGCTCACCCGCCGGGCAGCT	0.687													6	7					0	0	0.003080	0	0	
CEACAM5	1048	broad.mit.edu	37	19	42222079	42222079	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:42222079T>C	uc002ork.2	+	6	1391	c.1270T>C	c.(1270-1272)TAC>CAC	p.Y424H	CEACAM5_uc002orj.1_Missense_Mutation_p.Y423H|CEACAM5_uc002orl.2_Missense_Mutation_p.Y424H	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	424	Ig-like 5.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		TTCCCCCTCATACACCTATTA	0.542													36	66					0	0	0.005524	0	0	
PLAUR	5329	broad.mit.edu	37	19	44169538	44169538	+	Silent	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:44169538C>G	uc002oxf.1	-	3	470	c.240G>C	c.(238-240)CGG>CGC	p.R80R	PLAUR_uc002oxd.1_Silent_p.R80R|PLAUR_uc002oxe.1_Silent_p.R75R|PLAUR_uc002oxg.1_Silent_p.R80R	NM_002659	NP_002650	Q03405	UPAR_HUMAN	plasminogen activator, urokinase receptor	80	UPAR/Ly6 1.				attachment of GPI anchor to protein|blood coagulation|C-terminal protein lipidation|cellular component movement|chemotaxis|fibrinolysis|regulation of proteolysis	anchored to membrane|cell surface|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|extrinsic to membrane|integral to membrane|plasma membrane	enzyme binding|U-plasminogen activator receptor activity			ovary(1)	1		Prostate(69;0.0153)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Streptokinase(DB00086)|Tenecteplase(DB00031)|Urokinase(DB00013)	TCAAGCCAGTCCGATAGCTCA	0.527													29	24					0	0	0.009535	0	0	
KIR2DL3	3804	broad.mit.edu	37	19	55250954	55250954	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:55250954G>A	uc002qgv.2	+	2	54	c.36G>A	c.(34-36)GGG>GGA	p.G12G	KIR2DL3_uc002qgx.2_Silent_p.G12G|KIR2DL3_uc002qgy.2_Silent_p.G12G|KIR2DL3_uc010erw.1_Silent_p.G12G|KIR2DL1_uc002qgz.1_5'UTR|KIR2DL3_uc002qha.1_5'Flank	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	12					immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		TCTTTCCAGGGTTCTTCTTGC	0.567													25	57					0	0	0.006230	0	0	
NLRP2	55655	broad.mit.edu	37	19	55494276	55494276	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr19:55494276G>A	uc002qij.2	+	6	1296	c.1210G>A	c.(1210-1212)GTG>ATG	p.V404M	NLRP2_uc010yfp.1_Missense_Mutation_p.V381M|NLRP2_uc010esn.2_Missense_Mutation_p.V380M|NLRP2_uc010eso.2_Missense_Mutation_p.V401M|NLRP2_uc010esp.2_Missense_Mutation_p.V382M	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	404	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GTGCTGGATCGTGTGCACGAC	0.642													18	24					0	0	0.010504	0	0	
C2orf39	92749	broad.mit.edu	37	2	26678055	26678055	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:26678055A>T	uc002rhg.2	+	16	2194	c.2120A>T	c.(2119-2121)CAG>CTG	p.Q707L		NM_145038	NP_659475	Q96MC2	CC164_HUMAN	hypothetical protein LOC92749	707	Potential.										0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGGAGCAGCAGAACACAGAG	0.597													39	55					0	0	0.006230	0	0	
NRBP1	29959	broad.mit.edu	37	2	27656863	27656863	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:27656863T>G	uc002rko.2	+	5	1173	c.341T>G	c.(340-342)GTT>GGT	p.V114G	NRBP1_uc002rkq.2_Missense_Mutation_p.V114G|NRBP1_uc002rkp.2_Missense_Mutation_p.V114G|NRBP1_uc002rkr.2_5'Flank	NM_013392	NP_037524	Q9UHY1	NRBP_HUMAN	nuclear receptor binding protein	114	Protein kinase.				ER to Golgi vesicle-mediated transport|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cell cortex|endomembrane system|lamellipodium|membrane|nucleoplasm	ATP binding|protein homodimerization activity|protein kinase activity			ovary(2)|lung(1)	3	Acute lymphoblastic leukemia(172;0.155)					CAGGAAAAGGTTCGTGCTGTG	0.403													88	147					0	0	0.014410	0	0	
ALK	238	broad.mit.edu	37	2	30142909	30142909	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:30142909G>A	uc002rmy.2	-	1	1524	c.617C>T	c.(616-618)GCG>GTG	p.A206V		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	206	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	GCGAATTGCCGCGGACAGCCT	0.602			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				14	25					0	0	0.016723	0	0	
BCL11A	53335	broad.mit.edu	37	2	60688687	60688687	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:60688687C>T	uc002sae.1	-	4	1588	c.1360G>A	c.(1360-1362)GAC>AAC	p.D454N	BCL11A_uc002sab.2_Missense_Mutation_p.D454N|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.D123N|BCL11A_uc010ypj.1_Missense_Mutation_p.D420N|BCL11A_uc002sad.1_Missense_Mutation_p.D302N|BCL11A_uc002saf.1_Missense_Mutation_p.D420N	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	454					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CCCACCAAGTCGCTGGTGCCG	0.572			T	IGH@	B-CLL								12	14					0	0	0.013537	0	0	
PUS10	150962	broad.mit.edu	37	2	61188647	61188647	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:61188647T>C	uc010fci.2	-	10	885	c.825A>G	c.(823-825)GTA>GTG	p.V275V	PUS10_uc002sao.2_Silent_p.V275V|PUS10_uc010ypk.1_Silent_p.V52V	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10	275					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			GAACAGCGCATACAGCCTTTG	0.353													97	233					0	0	0.014410	0	0	
Unknown	0	broad.mit.edu	37	2	89160201	89160201	+	RNA	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:89160201T>C	uc010ytr.1	-	239		c.9589A>G			uc002sti.1_RNA|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		GCAGAGAAAATCTTGCAATTG	0.388													10	4					0	0	0.006214	0	0	
Unknown	0	broad.mit.edu	37	2	89161107	89161107	+	RNA	SNP	C	G	G	rs148595512	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:89161107C>G	uc010ytr.1	-	218		c.9168G>C			uc002sti.1_5'Flank|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		CCCTCCTATACAAAAACTCCC	0.423													5	13					0	0	0.013537	0	0	
Unknown	0	broad.mit.edu	37	2	89161421	89161421	+	RNA	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:89161421T>C	uc010ytr.1	-	205		c.9064A>G			uc002sti.1_5'Flank|uc002stj.1_RNA					Parts of antibodies, mostly variable regions.																		CTTGGTCCCTTGGCCGAACGT	0.473													20	7					0	0	0.012319	0	0	
Unknown	0	broad.mit.edu	37	2	89161441	89161441	+	RNA	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:89161441T>C	uc010ytr.1	-	204		c.9044A>G			uc002sti.1_5'Flank|uc002stj.1_RNA					Parts of antibodies, mostly variable regions.																		TCCACCACAGTGAGAGCTCTC	0.498													20	9					0	0	0.008871	0	0	
Unknown	0	broad.mit.edu	37	2	89247054	89247054	+	RNA	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:89247054T>C	uc010ytr.1	-	101		c.8005A>G			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGTGACTCTGTCTCCTACAGA	0.473													49	16					0	0	0.014410	0	0	
TMEM127	55654	broad.mit.edu	37	2	96920726	96920726	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:96920726A>G	uc002svq.2	-	3	511	c.254T>C	c.(253-255)ATG>ACG	p.M85T	TMEM127_uc002svr.2_Missense_Mutation_p.M85T	NM_017849	NP_060319	O75204	TM127_HUMAN	transmembrane protein 127	85					negative regulation of cell proliferation|negative regulation of TOR signaling cascade	cytoplasm|integral to membrane|plasma membrane					0						CTGGGGATTCATGCAGAAATC	0.542									Pheochromocytoma_(Adrenal)_Familial				15	26					0	0	0.020292	0	0	
SNRNP200	23020	broad.mit.edu	37	2	96949033	96949033	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:96949033G>A	uc002svu.2	-	34	4907	c.4821C>T	c.(4819-4821)AGC>AGT	p.S1607S	SNRNP200_uc002svt.2_Silent_p.S217S|SNRNP200_uc010yuj.1_RNA|SNRNP200_uc002svv.1_Silent_p.S134S	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	1607	Helicase C-terminal 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CCTTGAGCGTGCTGTCACTTA	0.562													24	48					0	0	0.016522	0	0	
RALB	5899	broad.mit.edu	37	2	121043489	121043489	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:121043489A>G	uc002tmk.2	+	3	344	c.154A>G	c.(154-156)AGA>GGA	p.R52G	RALB_uc010yys.1_Missense_Mutation_p.R74G|RALB_uc002tml.2_Missense_Mutation_p.R73G|RALB_uc002tmm.2_Intron|RALB_uc010yyt.1_Intron	NM_002881	NP_002872	P11234	RALB_HUMAN	v-ral simian leukemia viral oncogene homolog B	52					apoptosis|cell cycle|cytokinesis|nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of exocyst assembly|regulation of exocyst localization	cytosol|midbody|plasma membrane	GTP binding|GTPase activity|protein binding			lung(3)	3		Prostate(154;0.122)				TGACAGTTATAGAAAGAAAGT	0.403													27	25					0	0	0.004656	0	0	
CCDC115	84317	broad.mit.edu	37	2	131099517	131099517	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:131099517C>A	uc002tqy.1	-	2	336	c.112G>T	c.(112-114)GGC>TGC	p.G38C	CCDC115_uc002tqw.1_Missense_Mutation_p.G30C|CCDC115_uc010zaf.1_Missense_Mutation_p.G33C|CCDC115_uc002tqx.2_Missense_Mutation_p.G33C|CCDC115_uc002tqz.1_Missense_Mutation_p.G38C|IMP4_uc002tra.1_5'Flank	NM_032357	NP_115733	Q96NT0	CC115_HUMAN	coiled-coil domain containing 115	38						endosome|lysosome					0	Colorectal(110;0.1)					GAGAGCCAGCCCTGCAGGGAG	0.672													8	18					1.12685e-05	1.15142e-05	0.004482	1	0	
GPR39	2863	broad.mit.edu	37	2	133174980	133174980	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:133174980C>T	uc002ttl.2	+	1	834	c.365C>T	c.(364-366)ACG>ATG	p.T122M		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	122	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						AGCTACGCTACGCTGCTGCAC	0.572													19	34					0	0	0.006122	0	0	
GTDC1	79712	broad.mit.edu	37	2	144764846	144764846	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:144764846C>T	uc002tvp.2	-	7	1057	c.778G>A	c.(778-780)GGT>AGT	p.G260S	GTDC1_uc002tvo.2_Missense_Mutation_p.G260S|GTDC1_uc002tvq.2_Intron|GTDC1_uc002tvr.2_Missense_Mutation_p.G260S|GTDC1_uc010fnn.2_Missense_Mutation_p.G260S|GTDC1_uc002tvs.2_Missense_Mutation_p.G228S|GTDC1_uc010fno.2_Missense_Mutation_p.G131S|GTDC1_uc002tvt.1_Missense_Mutation_p.G260S	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	260					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		TTATTTTCACCATGATGAGAG	0.408													22	33					0	0	0.010504	0	0	
RBM43	375287	broad.mit.edu	37	2	152107671	152107671	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:152107671G>A	uc002txh.2	-	4	971	c.823C>T	c.(823-825)CAT>TAT	p.H275Y		NM_198557	NP_940959	Q6ZSC3	RBM43_HUMAN	RNA binding motif protein 43	275							nucleotide binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		TCTTTTACATGTTTTGCATTG	0.348													23	41					0	0	0.016522	0	0	
ZAK	51776	broad.mit.edu	37	2	174047623	174047623	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:174047623A>T	uc002uhz.2	+	4	489	c.289A>T	c.(289-291)AAC>TAC	p.N97Y	ZAK_uc002uhx.2_Missense_Mutation_p.N97Y|ZAK_uc002uhy.2_Missense_Mutation_p.N97Y|ZAK_uc010zei.1_5'UTR|ZAK_uc002uia.1_Missense_Mutation_p.N97Y	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	97	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			CATTAACAGTAACAGAAGTGA	0.323													14	17					0	0	0.006122	0	0	
ATF2	1386	broad.mit.edu	37	2	175976308	175976308	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:175976308T>C	uc002ujl.2	-	10	1078	c.816A>G	c.(814-816)TCA>TCG	p.S272S	ATF2_uc010fqv.2_Silent_p.S223S|ATF2_uc002ujv.2_Silent_p.S19S|ATF2_uc002ujm.2_Silent_p.S214S|ATF2_uc002ujn.2_RNA|ATF2_uc002ujo.2_Intron|ATF2_uc002ujp.2_RNA|ATF2_uc002ujq.2_Silent_p.S272S|ATF2_uc002ujr.2_RNA|ATF2_uc010fqu.2_Silent_p.S254S|ATF2_uc002ujs.2_Silent_p.S214S|ATF2_uc002ujt.2_RNA|ATF2_uc002uju.2_RNA|ATF2_uc002ujw.1_Silent_p.S214S|ATF2_uc002ujx.1_RNA	NM_001880	NP_001871	P15336	ATF2_HUMAN	activating transcription factor 2	272					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	nucleoplasm	protein dimerization activity|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(1)|breast(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.125)			TTTTTGCTTCTGACTGTACTG	0.408													19	32					0	0	0.008871	0	0	
TTN	7273	broad.mit.edu	37	2	179407894	179407894	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:179407894T>C	uc010zfg.1	-	296	89326	c.89102A>G	c.(89101-89103)GAA>GGA	p.E29701G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E23396G|TTN_uc010zfi.1_Missense_Mutation_p.E23329G|TTN_uc010zfj.1_Missense_Mutation_p.E23204G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30628							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGTTCACCTTCATTTAAGGA	0.448													14	161					0	0	0.016723	0	0	
IHH	3549	broad.mit.edu	37	2	219920533	219920533	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:219920533C>T	uc002vjo.1	-	3	632	c.632G>A	c.(631-633)CGC>CAC	p.R211H		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	211					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACTCTCCAGGCGTACCTGGGC	0.667													12	14					0	0	0.013537	0	0	
CAPN10	11132	broad.mit.edu	37	2	241530408	241530408	+	Silent	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr2:241530408A>G	uc002vzk.1	+	3	634	c.450A>G	c.(448-450)TTA>TTG	p.L150L	CAPN10_uc010zoh.1_Silent_p.L150L|CAPN10_uc002vzl.1_Silent_p.L150L|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Missense_Mutation_p.Y26C|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	150	Calpain catalytic.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		GGCTCCCCTTACTGGAAAAGG	0.642													13	21					0	0	0.013537	0	0	
FKBP1A	2280	broad.mit.edu	37	20	1356212	1356212	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr20:1356212G>A	uc002wey.2	-	3	295	c.121C>T	c.(121-123)CGG>TGG	p.R41W	FKBP1A_uc010gac.2_Intron|uc002wew.2_Intron|uc002wex.2_Intron|FKBP1A_uc002wez.2_Intron|FKBP1A_uc010gad.2_Intron|FKBP1A_uc002wfa.2_Missense_Mutation_p.R41W|FKBP1A_uc002wfb.2_Intron|FKBP1A_uc010gae.2_Missense_Mutation_p.R25W|FKBP1A_uc010gaf.2_RNA	NM_000801	NP_000792	P62942	FKB1A_HUMAN	FK506 binding protein 1A, 12kDa	41	PPIase FKBP-type.				'de novo' protein folding|beta-amyloid formation|fibril organization|heart trabecula formation|negative regulation of protein phosphatase type 2B activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein binding|positive regulation of protein ubiquitination|protein maturation by protein folding|protein refolding|regulation of activin receptor signaling pathway|regulation of immune response|regulation of ryanodine-sensitive calcium-release channel activity|SMAD protein complex assembly|T cell activation|ventricular cardiac muscle tissue morphogenesis	axon|cytosol|sarcoplasmic reticulum membrane|terminal cisterna	activin binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity|signal transducer activity|SMAD binding|type I transforming growth factor beta receptor binding				0					Pimecrolimus(DB00337)|Sirolimus(DB00877)|Tacrolimus(DB00864)	TTTCTGTCCCGGGAGGAATCA	0.463													15	19					0	0	0.003163	0	0	
PAK7	57144	broad.mit.edu	37	20	9520159	9520159	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr20:9520159C>G	uc002wnl.2	-	11	2655	c.2110G>C	c.(2110-2112)GGT>CGT	p.G704R	PAK7_uc002wnk.2_Missense_Mutation_p.G704R|PAK7_uc002wnj.2_Missense_Mutation_p.G704R|PAK7_uc010gby.1_Missense_Mutation_p.G617R	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	704			G -> S (in a metastatic melanoma sample; somatic mutation).				ATP binding|protein binding|protein serine/threonine kinase activity	p.G704S(1)		lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GACGGTGGACCTGCTAGTTTT	0.507													15	151					0	0	0.020292	0	0	
TH1L	51497	broad.mit.edu	37	20	57569712	57569712	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr20:57569712A>C	uc002yag.2	+	15	1781	c.1754A>C	c.(1753-1755)AAC>ACC	p.N585T	TH1L_uc002yaf.1_RNA|TH1L_uc002yah.2_3'UTR	NM_198976	NP_945327	Q8IXH7	NELFD_HUMAN	TH1-like protein	585					negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	all_lung(29;0.00711)		Colorectal(105;0.109)			TGCAAATCTAACTTCATCATG	0.343													30	45					0	0	0.012213	0	0	
ZNF831	128611	broad.mit.edu	37	20	57766977	57766977	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr20:57766977G>A	uc002yan.2	+	1	903	c.903G>A	c.(901-903)TTG>TTA	p.L301L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	301						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGCGTAAGTTGCCAGAGCAGA	0.701													22	31					0	0	0.016522	0	0	
CDH4	1002	broad.mit.edu	37	20	60509180	60509180	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr20:60509180G>A	uc002ybn.1	+	15	2460	c.2446G>A	c.(2446-2448)GTG>ATG	p.V816M	CDH4_uc002ybp.1_Missense_Mutation_p.V742M	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	816	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			AGCCCCTGGCGTGCGTCGCGT	0.677													14	25					0	0	0.016723	0	0	
LAMA5	3911	broad.mit.edu	37	20	60921763	60921763	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr20:60921763C>T	uc002ycq.2	-	8	1233	c.1166G>A	c.(1165-1167)GGT>GAT	p.G389D		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	389	Laminin EGF-like 2.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GACACCCCCACCCTGATAGGT	0.647													10	12					0	0	0.008291	0	0	
LOC96610	96610	broad.mit.edu	37	22	23214065	23214065	+	RNA	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:23214065C>T	uc011aim.1	+	326		c.14142C>T								Parts of antibodies, mostly variable regions.												0						GTGATGGCAGCCACAGCAAGG	0.567													36	82					0	0	0.019004	0	0	
LOC96610	96610	broad.mit.edu	37	22	23223344	23223344	+	RNA	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:23223344C>T	uc011aim.1	+	334		c.14479C>T								Parts of antibodies, mostly variable regions.												0						AGACAGCCAGCATCACCTGCT	0.537													6	24					0	0	0.020292	0	0	
LOC96610	96610	broad.mit.edu	37	22	23223347	23223347	+	RNA	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:23223347C>T	uc011aim.1	+	334		c.14482C>T								Parts of antibodies, mostly variable regions.												0						CAGCCAGCATCACCTGCTCTG	0.547													5	20					0	0	0.016723	0	0	
LOC96610	96610	broad.mit.edu	37	22	23223452	23223452	+	RNA	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:23223452A>G	uc011aim.1	+	334		c.14587A>G								Parts of antibodies, mostly variable regions.												0						AGCGGCCCTCAGGGATCCCTG	0.542													3	19					0	0	0.001168	0	0	
LOC96610	96610	broad.mit.edu	37	22	23223565	23223565	+	RNA	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:23223565G>C	uc011aim.1	+	334		c.14700G>C								Parts of antibodies, mostly variable regions.												0						TGGGACAGCAGCACTGCACAC	0.582													7	21					0	0	0.003080	0	0	
LOC96610	96610	broad.mit.edu	37	22	23223632	23223632	+	Splice_Site	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:23223632C>G	uc011aim.1	+	338		c.14726_splice	c.e338+1							Parts of antibodies, mostly variable regions.												0						GCCTGGCTCACAAGACCCTTC	0.567													6	3					0	0	0.001168	0	0	
LGALS1	3956	broad.mit.edu	37	22	38075624	38075624	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:38075624C>T	uc003atn.2	+	4	373	c.276C>T	c.(274-276)TTC>TTT	p.F92F		NM_002305	NP_002296	P09382	LEG1_HUMAN	galectin-1	92	Galectin.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of apoptosis	cytoplasm|extracellular space|proteinaceous extracellular matrix	galactoside binding|signal transducer activity				0	Melanoma(58;0.0574)					GCATCACCTTCGACCAGGCCA	0.607													4	43					0	0	0.009096	0	0	
TNFRSF13C	115650	broad.mit.edu	37	22	42321376	42321376	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:42321376G>A	uc003bbl.2	-	3	594	c.550C>T	c.(550-552)CAA>TAA	p.Q184*	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|TNFRSF13C_uc010gyp.1_Nonsense_Mutation_p.Q185*	NM_052945	NP_443177	Q96RJ3	TR13C_HUMAN	BAFF receptor	184	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						CCCTGCTATTGTTGCTCAGGG	0.632													4	11					0	0	0.014758	0	0	
FAM116B	414918	broad.mit.edu	37	22	50753285	50753285	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr22:50753285A>T	uc011aru.1	-	11	896	c.824T>A	c.(823-825)CTG>CAG	p.L275Q	FAM116B_uc011arv.1_Missense_Mutation_p.L275Q	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	275											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CAGGACTAGCAGGGGCTCCCC	0.672													6	7					0	0	0.001168	0	0	
CNTN4	152330	broad.mit.edu	37	3	3095653	3095653	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:3095653A>G	uc003bpc.2	+	23	3195	c.2974A>G	c.(2974-2976)ATA>GTA	p.I992V	CNTN4_uc003bpe.2_Missense_Mutation_p.I664V|CNTN4_uc003bpf.2_Missense_Mutation_p.I663V|CNTN4_uc003bpg.2_Missense_Mutation_p.I248V	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	992					axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AATTCCAAAGATATCAAGTGA	0.418													11	33					0	0	0.008291	0	0	
TGFBR2	7048	broad.mit.edu	37	3	30713931	30713931	+	Splice_Site	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:30713931T>G	uc003ceo.2	+	4	1636	c.1254_splice	c.e4+2	p.Q418_splice	TGFBR2_uc003cen.2_Splice_Site_p.Q443_splice	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II						activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						AGTGGGCAGGTAAGTTAGAGC	0.527													45	64					0	0	0.009718	0	0	
IFT122	55764	broad.mit.edu	37	3	129231237	129231237	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:129231237C>T	uc003emm.2	+	24	3175	c.2969C>T	c.(2968-2970)CCC>CTC	p.P990L	IFT122_uc003eml.2_Missense_Mutation_p.P1041L|IFT122_uc003emn.2_Missense_Mutation_p.P931L|IFT122_uc003emo.2_Missense_Mutation_p.P880L|IFT122_uc003emp.2_Missense_Mutation_p.P840L|IFT122_uc010htc.2_Missense_Mutation_p.P983L|IFT122_uc011bky.1_Missense_Mutation_p.P781L|IFT122_uc003emq.2_Missense_Mutation_p.P830L|IFT122_uc003emr.2_Missense_Mutation_p.P743L|IFT122_uc011bla.1_Missense_Mutation_p.P764L|IFT122_uc010hte.2_Missense_Mutation_p.P316L|IFT122_uc003ems.2_Missense_Mutation_p.P372L|IFT122_uc011bkx.1_Missense_Mutation_p.P831L	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	990					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						AAGGACACCCCCTCGGGCATC	0.517													9	128					0	0	0.006214	0	0	
SIAH2	6478	broad.mit.edu	37	3	150480426	150480427	+	Missense_Mutation	DNP	GC	CA	CA			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:150480426_150480427GC>CA	uc003eyi.2	-	1	837_838	c.210_211GC>TG	c.(208-213)CAGCAC>CATGAC	p.70_71QH>HD		NM_005067	NP_005058	O43255	SIAH2_HUMAN	seven in absentia homolog 2	70_71					apoptosis|axon guidance|cell cycle|negative regulation of canonical Wnt receptor signaling pathway|small GTPase mediated signal transduction|ubiquitin-dependent protein catabolic process	cytosol|nucleus	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0538)|Lung(72;0.066)			AGCTCGTGGTGCTGCGGGGACA	0.559													6	10					0	0	0.004672	0	0	
SDHAP2	727956	broad.mit.edu	37	3	195400799	195400799	+	Missense_Mutation	SNP	G	A	A	rs7635172	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:195400799G>A	uc003fuw.2	+	9	1289	c.95G>A	c.(94-96)TGT>TAT	p.C32Y	SDHAP2_uc011btb.1_Silent_p.L179L|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CAAACTCGCTGTTGGACCTGG	0.597													5	11					0	0	0.004482	0	0	
PIGZ	80235	broad.mit.edu	37	3	196674283	196674283	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:196674283C>T	uc003fxh.2	-	3	1632	c.1485G>A	c.(1483-1485)CTG>CTA	p.L495L		NM_025163	NP_079439	Q86VD9	PIGZ_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	495					GPI anchor biosynthetic process	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			ovary(3)	3	all_cancers(143;1.05e-08)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.29e-24)|all cancers(36;2.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00603)		GGGTTTGGCACAGGGCCCAGT	0.647													31	34					0	0	0.009535	0	0	
PDS5A	23244	broad.mit.edu	37	4	39904078	39904078	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:39904078A>T	uc003guv.3	-	13	1928	c.1388T>A	c.(1387-1389)CTG>CAG	p.L463Q	PDS5A_uc010ifo.2_Missense_Mutation_p.L423Q|PDS5A_uc003guw.3_Missense_Mutation_p.L463Q	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	463					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						CTCTACCAACAGTCTAGGAAA	0.279													12	17					0	0	0.016723	0	0	
PHOX2B	8929	broad.mit.edu	37	4	41748140	41748140	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:41748140G>A	uc003gwf.3	-	3	989	c.629C>T	c.(628-630)GCG>GTG	p.A210V		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	210					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						gccTCCATTCGCCCCGCAGCT	0.408			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				13	15					0	0	0.016723	0	0	
LPHN3	23284	broad.mit.edu	37	4	62775347	62775347	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:62775347G>T	uc010ihh.2	+	9	1926	c.1753G>T	c.(1753-1755)GCT>TCT	p.A585S	LPHN3_uc003hcq.3_Missense_Mutation_p.A585S|LPHN3_uc003hct.2_5'UTR|LPHN3_uc003hcs.1_Missense_Mutation_p.A414S	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	585	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TCACTTGAATGCTGGGGACAT	0.468													6	9					5.18039e-06	5.32655e-06	0.003080	1	0	
FRAS1	80144	broad.mit.edu	37	4	79402981	79402981	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:79402981C>T	uc003hlb.2	+	57	8907	c.8467C>T	c.(8467-8469)CGC>TGC	p.R2823C		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2818	Calx-beta 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCCAGTTATCCGCCATGGTAC	0.473													72	130					0	0	0.014410	0	0	
DSPP	1834	broad.mit.edu	37	4	88534064	88534064	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:88534064C>T	uc003hqu.2	+	4	846	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	242					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		TGGATAATTCCGATGGGAGTC	0.458													20	30					0	0	0.007413	0	0	
FAM190A	401145	broad.mit.edu	37	4	91549260	91549260	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:91549260G>A	uc003hsv.3	+	6	2149	c.1809G>A	c.(1807-1809)GCG>GCA	p.A603A	FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Silent_p.A603A	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	603										large_intestine(1)|ovary(1)	2						GTCCATCTGCGGATTGGCCTC	0.443													29	35					0	0	0.007291	0	0	
NFKB1	4790	broad.mit.edu	37	4	103517342	103517342	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:103517342A>C	uc011ceq.1	+	14	1812	c.1345A>C	c.(1345-1347)AGT>CGT	p.S449R	NFKB1_uc011cep.1_Missense_Mutation_p.S450R|NFKB1_uc011cer.1_Missense_Mutation_p.S269R	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	449	Interaction with CFLAR.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	TTGTGACAAAAGTGATGACAA	0.408													22	36					0	0	0.014323	0	0	
EGF	1950	broad.mit.edu	37	4	110915908	110915908	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:110915908C>T	uc003hzy.3	+	20	3329	c.2877C>T	c.(2875-2877)CAC>CAT	p.H959H	EGF_uc011cfu.1_Silent_p.H917H|EGF_uc011cfv.1_Silent_p.H918H|EGF_uc010imk.2_Silent_p.H107H	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	959	Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	CACCCCCTCACCTCAGGGAAG	0.433													35	45					0	0	0.017118	0	0	
ANK2	287	broad.mit.edu	37	4	114195727	114195727	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:114195727C>T	uc003ibe.3	+	15	1705	c.1605C>T	c.(1603-1605)CAC>CAT	p.H535H	ANK2_uc003ibd.3_Silent_p.H514H|ANK2_uc003ibf.3_Silent_p.H535H|ANK2_uc003ibc.2_Silent_p.H511H|ANK2_uc011cgb.1_Silent_p.H550H	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	535	ANK 16.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CACCACTGCACATCTCTGCCC	0.527													34	63					0	0	0.013726	0	0	
ANKRD50	57182	broad.mit.edu	37	4	125592169	125592169	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:125592169C>A	uc003ifg.3	-	3	2529	c.2263G>T	c.(2263-2265)GCT>TCT	p.A755S	ANKRD50_uc011cgo.1_Missense_Mutation_p.A576S|ANKRD50_uc010inw.2_Missense_Mutation_p.A755S	NM_020337	NP_065070	Q9ULJ7	ANR50_HUMAN	ankyrin repeat domain 50	755	ANK 9.									central_nervous_system(1)	1						TCATAGGCAGCTACCAGCAGT	0.473													33	48					8.88839e-20	9.59011e-20	0.010818	1	0	
FAT4	79633	broad.mit.edu	37	4	126241663	126241663	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:126241663G>A	uc003ifj.3	+	1	4097	c.4097G>A	c.(4096-4098)AGC>AAC	p.S1366N		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1366	Cadherin 13.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTTAGCATTAGCCCAAACACT	0.383													70	82					0	0	0.014410	0	0	
FAT4	79633	broad.mit.edu	37	4	126412365	126412365	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:126412365C>T	uc003ifj.3	+	17	14388	c.14388C>T	c.(14386-14388)AAC>AAT	p.N4796N	FAT4_uc011cgp.1_Silent_p.N3037N|FAT4_uc003ifi.1_Silent_p.N2273N	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4796	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGAGGCTCAACACACCTCGCC	0.522													28	47					0	0	0.006320	0	0	
PCDH10	57575	broad.mit.edu	37	4	134072395	134072395	+	Missense_Mutation	SNP	T	C	C	rs146215385		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:134072395T>C	uc003iha.2	+	1	1926	c.1100T>C	c.(1099-1101)GTG>GCG	p.V367A	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.V367A	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	367	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		AAGGAAGCGGTGAGTGAGGGC	0.632													39	53					0	0	0.006230	0	0	
PCDH10	57575	broad.mit.edu	37	4	134073610	134073610	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:134073610G>C	uc003iha.2	+	1	3141	c.2315G>C	c.(2314-2316)GGC>GCC	p.G772A	PCDH10_uc003igz.2_Missense_Mutation_p.G772A	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	772	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ACCTGCTGTGGCCGCCAAGCC	0.582													9	20					0	0	0.006214	0	0	
POU4F2	5458	broad.mit.edu	37	4	147561803	147561803	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:147561803G>A	uc003ikv.2	+	2	1321	c.1073G>A	c.(1072-1074)CGC>CAC	p.R358H		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	358	Homeobox.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CCAGAGAAGCGCTCGCTCGAA	0.607													43	52					0	0	0.010771	0	0	
WDR17	116966	broad.mit.edu	37	4	177081171	177081171	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:177081171A>G	uc003iuj.2	+	20	2780	c.2624A>G	c.(2623-2625)GAT>GGT	p.D875G	WDR17_uc003iuk.2_Missense_Mutation_p.D851G|WDR17_uc003ium.3_Missense_Mutation_p.D851G|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.D94G	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	875										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ATCCAGGAAGATAAGGATGAT	0.333													17	31					0	0	0.007413	0	0	
WDR17	116966	broad.mit.edu	37	4	177081215	177081215	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:177081215A>C	uc003iuj.2	+	20	2824	c.2668A>C	c.(2668-2670)AAA>CAA	p.K890Q	WDR17_uc003iuk.2_Missense_Mutation_p.K866Q|WDR17_uc003ium.3_Missense_Mutation_p.K866Q|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.K109Q	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	890										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TGGTGATGTGAAAAAGCTAGT	0.383													25	32					0	0	0.021523	0	0	
ODZ3	55714	broad.mit.edu	37	4	183672997	183672997	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:183672997C>T	uc003ivd.1	+	19	3711	c.3674C>T	c.(3673-3675)ACG>ATG	p.T1225M	ODZ3_uc003ive.1_Missense_Mutation_p.T638M	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1225	Extracellular (Potential).|NHL 1.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GATCCAGTCACGGGAGATCTG	0.458													31	45					0	0	0.015359	0	0	
CDH18	1016	broad.mit.edu	37	5	19721471	19721471	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:19721471C>T	uc003jgc.2	-	4	1005	c.628G>A	c.(628-630)GTC>ATC	p.V210I	CDH18_uc003jgd.2_Missense_Mutation_p.V210I|CDH18_uc011cnm.1_Missense_Mutation_p.V210I	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	210	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TTAGGGTCGACGGAGAAGTAG	0.448													44	67					0	0	0.014410	0	0	
ZMAT2	153527	broad.mit.edu	37	5	140081626	140081626	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:140081626C>T	uc003lgy.1	+	3	162	c.148C>T	c.(148-150)CGG>TGG	p.R50W		NM_144723	NP_653324	Q96NC0	ZMAT2_HUMAN	zinc finger, matrin type 2	50						nucleus	DNA binding|zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGAGCTTTTACGGCATAGGGA	0.443													28	46					0	0	0.007291	0	0	
PCDHA11	56138	broad.mit.edu	37	5	140250985	140250985	+	Missense_Mutation	SNP	C	T	T	rs146613275	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:140250985C>T	uc003lia.2	+	1	3155	c.2297C>T	c.(2296-2298)ACG>ATG	p.T766M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.T766M	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	766	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCACCTAAGACGGACCTCATG	0.627													7	14					0	0	0.003080	0	0	
FAT2	2196	broad.mit.edu	37	5	150885490	150885490	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:150885490G>A	uc003lue.3	-	23	12699	c.12686C>T	c.(12685-12687)CCC>CTC	p.P4229L	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.P836L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	4229	Cytoplasmic (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CATCTCCAGGGGGAAGGGGAA	0.642													61	100					0	0	0.014410	0	0	
ATP10B	23120	broad.mit.edu	37	5	160047922	160047922	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:160047922C>T	uc003lym.1	-	15	2695	c.1848G>A	c.(1846-1848)ACG>ACA	p.T616T	ATP10B_uc010jit.1_5'UTR|ATP10B_uc003lyn.2_Silent_p.T174T	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	616	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCTCCAGGGACGTCCCCAGAG	0.483													63	111					0	0	0.014410	0	0	
HMP19	51617	broad.mit.edu	37	5	173473785	173473785	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:173473785C>T	uc003mcx.2	+	2	172	c.27C>T	c.(25-27)AGC>AGT	p.S9S		NM_015980	NP_057064	Q9Y328	NSG2_HUMAN	HMP19 protein	9	Cytoplasmic (Potential).				dopamine receptor signaling pathway	cytoplasmic vesicle membrane|Golgi cisterna membrane|integral to membrane|multivesicular body membrane	dopamine receptor binding			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00925)|all_lung(126;0.0148)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			GTAACCCCAGCGAGAAGGGAA	0.532													39	57					0	0	0.005524	0	0	
HK3	3101	broad.mit.edu	37	5	176314553	176314553	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:176314553A>C	uc003mfa.2	-	11	1591	c.1499T>G	c.(1498-1500)GTT>GGT	p.V500G	HK3_uc003mez.2_Missense_Mutation_p.V56G	NM_002115	NP_002106	P52790	HXK3_HUMAN	hexokinase 3	500	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|membrane	ATP binding|glucokinase activity			ovary(3)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)|skin(1)	7	all_cancers(89;0.000104)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CTGTGCCTGAACCGCAGCCAG	0.682													13	20					0	0	0.016723	0	0	
DBN1	1627	broad.mit.edu	37	5	176894259	176894259	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr5:176894259G>A	uc003mgy.2	-	6	724	c.552C>T	c.(550-552)GCC>GCT	p.A184A	DBN1_uc003mgx.2_Silent_p.A186A|DBN1_uc010jkn.1_Silent_p.A134A|DBN1_uc003mgz.1_Silent_p.A121A	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	184					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCATACCTTGGCCTGCTCCC	0.607													54	94					0	0	0.014410	0	0	
NUP153	9972	broad.mit.edu	37	6	17629625	17629625	+	Silent	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:17629625A>C	uc003ncd.1	-	18	3005	c.2805T>G	c.(2803-2805)GGT>GGG	p.G935G	NUP153_uc011dje.1_Silent_p.G966G|NUP153_uc010jpl.1_Silent_p.G893G	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	935					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			CGGATGACACACCTATTTTGA	0.378													28	39					0	0	0.006320	0	0	
HIST1H1C	3006	broad.mit.edu	37	6	26056223	26056223	+	Missense_Mutation	SNP	G	C	C	rs141266449		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:26056223G>C	uc003nfw.2	-	1	477	c.434C>G	c.(433-435)GCA>GGA	p.A145G		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	145					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						CTTCGGAGTTGCGCCGCCAGC	0.582													53	45					0	0	0.014410	0	0	
HIST1H1C	3006	broad.mit.edu	37	6	26056250	26056250	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:26056250T>A	uc003nfw.2	-	1	450	c.407A>T	c.(406-408)AAG>ATG	p.K136M		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	136					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						CTTGGGCTTCTTGGCTGCCCC	0.567													33	57					0	0	0.012213	0	0	
HIST1H2BK	85236	broad.mit.edu	37	6	27114211	27114211	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:27114211T>C	uc003nix.1	-	1	409	c.367A>G	c.(367-369)ACC>GCC	p.T123A	HIST1H2AH_uc003niz.2_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080593	NP_542160	O60814	H2B1K_HUMAN	histone cluster 1, H2bk	123					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						TTAGCGCTGGTGTACTTGGTG	0.547													7	55					0	0	0.014323	0	0	
HIST1H2BK	85236	broad.mit.edu	37	6	27114498	27114498	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:27114498C>T	uc003nix.1	-	1	122	c.80G>A	c.(79-81)GGC>GAC	p.G27D	HIST1H2AH_uc003niz.2_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080593	NP_542160	O60814	H2B1K_HUMAN	histone cluster 1, H2bk	27					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCGCTTCTTGCCGTCCTTCTT	0.602													56	129					0	0	0.014410	0	0	
HIST1H2AJ	8331	broad.mit.edu	37	6	27782505	27782505	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:27782505C>A	uc003njn.1	-	1	14	c.14G>T	c.(13-15)GGT>GTT	p.G5V	HIST1H2BM_uc003njo.2_5'Flank	NM_021066	NP_066544	Q99878	H2A1J_HUMAN	histone cluster 1, H2aj	5					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCCCTGCTTACCACGCCCAGA	0.537													17	44					0.000958276	0.000970106	0.007413	1	0	
OR2J2	26707	broad.mit.edu	37	6	29142227	29142227	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:29142227G>A	uc011dlm.1	+	1	917	c.815G>A	c.(814-816)GGC>GAC	p.G272D		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGATCAGGGCAAGTTCATT	0.428													36	58					0	0	0.015359	0	0	
HLA-B	3106	broad.mit.edu	37	6	31324659	31324659	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:31324659C>T	uc003nth.2	-	2	203	c.149G>A	c.(148-150)GGC>GAC	p.G50D	HLA-C_uc003ntb.2_5'Flank|HLA-C_uc003ntc.1_5'Flank|HLA-B_uc010jsm.1_5'Flank|HLA-B_uc011dnk.1_5'Flank|HLA-B_uc003ntf.2_Missense_Mutation_p.G50D|HLA-B_uc003ntg.1_5'Flank|HLA-B_uc003nti.1_5'Flank|HLA-B_uc010jsn.1_5'Flank|HLA-B_uc010jso.2_Missense_Mutation_p.G22D	NM_005514	NP_005505	P01889	1B07_HUMAN	major histocompatibility complex, class I, B	50	Alpha-1.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity				0						GTCCACGTAGCCCACTGAGAT	0.677									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of				17	2					0	0	0.006122	0	0	
RDBP	7936	broad.mit.edu	37	6	31922644	31922644	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:31922644G>C	uc003nyk.2	-	7	634	c.430C>G	c.(430-432)CGA>GGA	p.R144G	RDBP_uc011dot.1_Intron|RDBP_uc003nyl.1_Missense_Mutation_p.R84G|RDBP_uc003nym.1_Missense_Mutation_p.R139G	NM_002904	NP_002895	P18615	NELFE_HUMAN	RD RNA-binding protein	144					positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	mitochondrion|nucleoplasm	nucleotide binding|protein binding|RNA binding				0						CCTAGTTCTCGAAGTCGATCA	0.547													47	58					0	0	0.014410	0	0	
SYNGAP1	8831	broad.mit.edu	37	6	33411705	33411705	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:33411705G>A	uc011dri.1	+	15	3571	c.3376G>A	c.(3376-3378)GGT>AGT	p.G1126S	SYNGAP1_uc010juy.2_Missense_Mutation_p.G1097S|SYNGAP1_uc010juz.2_Missense_Mutation_p.G838S	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	1126					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						TGGCGGAGGGGGTGGGGGGCT	0.682													8	6					0	0	0.003080	0	0	
LHFPL5	222662	broad.mit.edu	37	6	35773520	35773520	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:35773520G>C	uc003olg.1	+	1	450	c.73G>C	c.(73-75)GTG>CTG	p.V25L		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	25	Helical; (Potential).					integral to membrane				skin(1)	1						CTCGCGAGCCGTGGGCGTGAT	0.617													39	51					0	0	0.005524	0	0	
RNF8	9025	broad.mit.edu	37	6	37344811	37344811	+	Splice_Site	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:37344811T>G	uc003onq.3	+	6	1429	c.1236_splice	c.e6+2	p.E412_splice	RNF8_uc003onr.3_Splice_Site_p.E412_splice|RNF8_uc011dtx.1_Splice_Site_p.E344_splice	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1						cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						TTCATTGAGGTAATTATGAAC	0.249													7	18					0	0	0.006214	0	0	
KLC4	89953	broad.mit.edu	37	6	43029177	43029177	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:43029177C>T	uc003otv.1	+	2	181	c.104C>T	c.(103-105)GCC>GTC	p.A35V	KLC4_uc003otr.1_RNA|MRPL2_uc003ots.1_5'Flank|MRPL2_uc011dvc.1_5'Flank|MRPL2_uc010jyi.2_5'Flank|MRPL2_uc003ott.3_5'Flank|KLC4_uc011dvd.1_Missense_Mutation_p.A35V|KLC4_uc003otu.2_Missense_Mutation_p.A35V|KLC4_uc003otw.1_Missense_Mutation_p.A53V|KLC4_uc003otx.1_Missense_Mutation_p.A35V|KLC4_uc003oty.1_Missense_Mutation_p.A35V|KLC4_uc003otz.1_Missense_Mutation_p.A35V	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	35	Potential.					cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			GGGCTAGAGGCCCTACGCAGT	0.642													15	18					0	0	0.020292	0	0	
PRSS35	167681	broad.mit.edu	37	6	84234217	84234217	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:84234217C>T	uc003pjz.2	+	2	1220	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C	PRSS35_uc010kbm.2_Missense_Mutation_p.R353C	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	353	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GGTCTATCTGCGTCTGAAAGA	0.512													19	45					0	0	0.007413	0	0	
TIAM2	26230	broad.mit.edu	37	6	155451015	155451015	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:155451015G>A	uc003qqb.2	+	6	1931	c.658G>A	c.(658-660)GCC>ACC	p.A220T	TIAM2_uc003qqe.2_Missense_Mutation_p.A220T	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	220					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GGGGTCCAGCGCCGATTCCCT	0.642													23	35					0	0	0.014323	0	0	
CCR6	1235	broad.mit.edu	37	6	167550723	167550723	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:167550723G>A	uc003qvl.2	+	13	3481	c.1005G>A	c.(1003-1005)TGG>TGA	p.W335*	CCR6_uc010kkm.2_Nonsense_Mutation_p.W335*|CCR6_uc003qvn.3_Nonsense_Mutation_p.W335*|CCR6_uc003qvm.3_Nonsense_Mutation_p.W335*	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	335	Cytoplasmic (Potential).				cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		AGGACCTGTGGTGTGTGAGAA	0.498													24	38					0	0	0.014323	0	0	
MAD1L1	8379	broad.mit.edu	37	7	1937852	1937852	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:1937852T>C	uc003slh.1	-	18	2248	c.1982A>G	c.(1981-1983)GAC>GGC	p.D661G	MAD1L1_uc003sle.1_Missense_Mutation_p.D390G|MAD1L1_uc003slf.1_Missense_Mutation_p.D661G|MAD1L1_uc003slg.1_Missense_Mutation_p.D661G|MAD1L1_uc010ksh.1_Missense_Mutation_p.D661G|MAD1L1_uc003sli.1_Missense_Mutation_p.D569G|MAD1L1_uc010ksi.1_Missense_Mutation_p.D614G|MAD1L1_uc010ksj.2_Missense_Mutation_p.D661G|MAD1L1_uc003sld.1_Missense_Mutation_p.D117G	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	661					cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		GATGAGGCAGTCGCCTGGGTG	0.627													6	11					0	0	0.001984	0	0	
BBS9	27241	broad.mit.edu	37	7	33217127	33217127	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:33217127G>C	uc003tdn.1	+	5	879	c.366G>C	c.(364-366)CAG>CAC	p.Q122H	BBS9_uc003tdo.1_Missense_Mutation_p.Q122H|BBS9_uc003tdp.1_Missense_Mutation_p.Q122H|BBS9_uc003tdq.1_Missense_Mutation_p.Q122H|BBS9_uc010kwn.1_RNA|BBS9_uc011kan.1_Missense_Mutation_p.Q122H|BBS9_uc011kao.1_5'UTR	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	122					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			ACCAATGTCAGATGAAATTGA	0.323									Bardet-Biedl_syndrome				25	52					0	0	0.006320	0	0	
DDC	1644	broad.mit.edu	37	7	50566911	50566911	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:50566911C>A	uc003tpf.3	-	8	897	c.811G>T	c.(811-813)GAT>TAT	p.D271Y	DDC_uc010kza.2_Missense_Mutation_p.D186Y|DDC_uc003tpg.3_Missense_Mutation_p.D271Y	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	271					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	TAGGCTGCATCAACGTGCAGC	0.552													11	13					3.86212e-05	3.9219e-05	0.008291	1	0	
SPDYE7P	441251	broad.mit.edu	37	7	72339511	72339511	+	RNA	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:72339511A>C	uc010lal.1	-	1		c.145T>G				NR_003666				Homo sapiens speedy homolog E7 (Xenopus laevis), pseudogene (SPDYE7P), non-coding RNA.												0						CCACCACTCCATCTTCCTTTT	0.582													5	30					0	0	0.001168	0	0	
SEMA3C	10512	broad.mit.edu	37	7	80418653	80418653	+	Silent	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:80418653A>G	uc003uhj.2	-	12	1885	c.1323T>C	c.(1321-1323)GAT>GAC	p.D441D	SEMA3C_uc011kgw.1_Silent_p.D459D	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	441	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						GGTATCTCCCATCAGCAGCGT	0.393													33	70					0	0	0.019004	0	0	
PPP1R9A	55607	broad.mit.edu	37	7	94539579	94539579	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:94539579C>T	uc003unp.2	+	2	436	c.154C>T	c.(154-156)CAG>TAG	p.Q52*	PPP1R9A_uc010lfj.2_Nonsense_Mutation_p.Q52*|PPP1R9A_uc011kif.1_Nonsense_Mutation_p.Q52*|PPP1R9A_uc003unq.2_Nonsense_Mutation_p.Q52*|PPP1R9A_uc011kig.1_Nonsense_Mutation_p.Q52*	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	52	Actin-binding.					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			TGAGGGCTCCCAGCAGAGCAG	0.448										HNSCC(28;0.073)			13	24					0	0	0.013537	0	0	
BAIAP2L1	55971	broad.mit.edu	37	7	97991713	97991713	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:97991713C>T	uc003upj.2	-	2	346	c.83G>A	c.(82-84)CGA>CAA	p.R28Q		NM_018842	NP_061330	Q9UHR4	BI2L1_HUMAN	BAI1-associated protein 2-like 1	28	IMD.				filopodium assembly|positive regulation of actin cytoskeleton reorganization|positive regulation of actin filament polymerization|response to bacterium|signal transduction	cell junction|cytoskeleton|cytosol|nucleus	actin binding|cytoskeletal adaptor activity|proline-rich region binding|SH3 domain binding			ovary(1)	1	all_cancers(62;4.34e-10)|all_epithelial(64;5e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0113)|all_lung(186;0.0126)		STAD - Stomach adenocarcinoma(171;0.215)			TATTAAATTTCGCAGCCCAGG	0.299													25	58					0	0	0.006320	0	0	
ACHE	43	broad.mit.edu	37	7	100491479	100491479	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:100491479C>A	uc003uxd.2	-	1	531	c.375G>T	c.(373-375)GAG>GAT	p.E125D	ACHE_uc003uxe.2_Missense_Mutation_p.E125D|ACHE_uc003uxf.2_Missense_Mutation_p.E125D|ACHE_uc003uxg.2_Missense_Mutation_p.E125D|ACHE_uc003uxh.2_Missense_Mutation_p.E125D|ACHE_uc003uxi.2_Missense_Mutation_p.E125D|ACHE_uc003uxj.1_Missense_Mutation_p.E244D	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	125					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	ACAGGCAGTCCTCGCTCAGCT	0.582													26	48					4.87955e-14	5.21333e-14	0.005443	1	0	
DOCK4	9732	broad.mit.edu	37	7	111430549	111430549	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:111430549C>A	uc003vfx.2	-	31	3548	c.3279G>T	c.(3277-3279)ATG>ATT	p.M1093I	DOCK4_uc011kmm.1_5'Flank|DOCK4_uc003vfw.2_Missense_Mutation_p.M534I|DOCK4_uc003vfy.2_Missense_Mutation_p.M1129I	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1093	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GCTCCCAGTCCATCATATCAT	0.473													9	22					2.17888e-05	2.21948e-05	0.006214	1	0	
PTPRZ1	5803	broad.mit.edu	37	7	121653617	121653617	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:121653617C>T	uc003vjy.2	+	12	4912	c.4517C>T	c.(4516-4518)CCA>CTA	p.P1506L	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1506	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GGTAAATCACCATCAGCAAAT	0.418													20	33					0	0	0.007413	0	0	
PTPRZ1	5803	broad.mit.edu	37	7	121698906	121698906	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:121698906C>T	uc003vjy.2	+	28	6976	c.6581C>T	c.(6580-6582)CCA>CTA	p.P2194L	PTPRZ1_uc003vjz.2_Missense_Mutation_p.P1327L|PTPRZ1_uc011knt.1_Missense_Mutation_p.P784L	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	2194	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TGGCCAAATCCAGATAGCCCC	0.363													29	39					0	0	0.007291	0	0	
LMOD2	442721	broad.mit.edu	37	7	123296099	123296099	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:123296099G>A	uc003vky.2	+	1	239	c.82G>A	c.(82-84)GAG>AAG	p.E28K		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	28	Tropomyosin-binding (By similarity).|Potential.|Glu-rich.					cytoskeleton	actin binding|tropomyosin binding				0						CCTGTCAGCCGAGGAGCTGAA	0.537													6	11					0	0	0.001168	0	0	
MKLN1	4289	broad.mit.edu	37	7	131151138	131151138	+	Nonsense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:131151138T>G	uc011kpm.1	+	15	1956	c.1892T>G	c.(1891-1893)TTA>TGA	p.L631*	MKLN1_uc011kpl.1_Nonsense_Mutation_p.L608*|MKLN1_uc010lmh.2_Nonsense_Mutation_p.L631*|MKLN1_uc003vqs.2_Nonsense_Mutation_p.L424*|MKLN1_uc003vqu.2_Nonsense_Mutation_p.L121*	NM_013255	NP_037387	Q9UL63	MKLN1_HUMAN	muskelin 1, intracellular mediator containing	631	Kelch 6.				signal transduction	cytoplasm	protein binding			breast(1)	1	Melanoma(18;0.162)					AAAGATTATTTACTGAGGCAT	0.333													33	47					0	0	0.012213	0	0	
KEL	3792	broad.mit.edu	37	7	142650947	142650947	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:142650947C>G	uc003wcb.2	-	9	1231	c.1021G>C	c.(1021-1023)GAA>CAA	p.E341Q		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	341	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					TTCAAATATTCCACGTCATGG	0.537													82	146					0	0	0.014410	0	0	
CNTNAP2	26047	broad.mit.edu	37	7	146805422	146805422	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:146805422T>C	uc003weu.1	+	5	1250	c.734T>C	c.(733-735)CTG>CCG	p.L245P		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	245	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAAGCCAAGCTGGTCCTCAGT	0.398										HNSCC(39;0.1)			22	20					0	0	0.012319	0	0	
ZNF862	643641	broad.mit.edu	37	7	149558351	149558351	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:149558351T>C	uc010lpn.2	+	7	2294	c.2102T>C	c.(2101-2103)ATG>ACG	p.M701T	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	701					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						GGCTCAGCCATGTTGAGCTGC	0.632													3	21					0	0	0.004672	0	0	
MLL3	58508	broad.mit.edu	37	7	151893050	151893050	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:151893050T>C	uc003wla.2	-	28	4539	c.4320A>G	c.(4318-4320)ACA>ACG	p.T1440T	MLL3_uc003wkz.2_Silent_p.T501T	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1440					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TGTCATCATCTGTGTTTAAAA	0.299			N		medulloblastoma								22	22					0	0	0.021523	0	0	
NRG1	3084	broad.mit.edu	37	8	32621289	32621289	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:32621289C>T	uc003xiv.2	+	12	1809	c.1292C>T	c.(1291-1293)CCG>CTG	p.P431L	NRG1_uc010lvo.2_3'UTR|NRG1_uc003xiu.2_Missense_Mutation_p.P436L|NRG1_uc003xiw.2_Missense_Mutation_p.P428L|NRG1_uc003xit.2_3'UTR|NRG1_uc010lvr.2_Missense_Mutation_p.P173L|NRG1_uc010lvs.2_Missense_Mutation_p.P173L|NRG1_uc010lvp.2_Missense_Mutation_p.P385L|NRG1_uc010lvq.2_Missense_Mutation_p.P368L|NRG1_uc011lbg.1_3'UTR|NRG1_uc011lbh.1_Missense_Mutation_p.P274L|NRG1_uc003xja.2_Missense_Mutation_p.P242L	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	431	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		ATGACCACCCCGGCTCGTATG	0.547													35	53					0	0	0.013726	0	0	
UNC5D	137970	broad.mit.edu	37	8	35453072	35453072	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:35453072A>C	uc003xjr.1	+	4	795	c.467A>C	c.(466-468)TAT>TCT	p.Y156S	UNC5D_uc003xjs.1_Missense_Mutation_p.Y151S	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	156	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		TTCTTTGCAGATTTACGGAAA	0.433													32	52					0	0	0.010818	0	0	
GPR124	25960	broad.mit.edu	37	8	37688342	37688342	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:37688342G>A	uc003xkj.2	+	7	1196	c.833G>A	c.(832-834)CGC>CAC	p.R278H	GPR124_uc010lvy.2_Missense_Mutation_p.R278H	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	278	Extracellular (Potential).|Ig-like.				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			AACGACACCCGCATCCGCTGG	0.642													3	1					0	0	0.004672	0	0	
LYN	4067	broad.mit.edu	37	8	56912001	56912001	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:56912001C>T	uc003xsk.3	+	12	1511	c.1229C>T	c.(1228-1230)ACG>ATG	p.T410M	LYN_uc003xsl.3_Missense_Mutation_p.T389M	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	410	Protein kinase.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			ATTAAGTGGACGGCTCCAGAA	0.393													26	9					0	0	0.004656	0	0	
TRPA1	8989	broad.mit.edu	37	8	72950287	72950287	+	Silent	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:72950287A>T	uc003xza.2	-	20	2491	c.2316T>A	c.(2314-2316)ACT>ACA	p.T772T	uc011lff.1_Intron|uc003xyy.2_Intron	NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	772	Extracellular (Potential).					integral to plasma membrane		p.T772T(1)		ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	AAATCATACAAGTTTTTATTA	0.259													8	15					0	0	0.004482	0	0	
NECAB1	64168	broad.mit.edu	37	8	91929744	91929744	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:91929744G>T	uc011lgg.1	+	6	576	c.382G>T	c.(382-384)GAA>TAA	p.E128*		NM_022351	NP_071746	Q8N987	NECA1_HUMAN	N-terminal EF-hand calcium binding protein 1	128					antibiotic biosynthetic process	cytoplasm	calcium ion binding|oxidoreductase activity			central_nervous_system(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.0499)			CTCCAATTTGGAACAATTCGT	0.378													12	19					7.03913e-09	7.35297e-09	0.013537	1	0	
YWHAZ	7534	broad.mit.edu	37	8	101936211	101936211	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:101936211A>C	uc011lhe.1	-	5	827	c.650T>G	c.(649-651)ATA>AGA	p.I217R	YWHAZ_uc003yjv.2_Missense_Mutation_p.I217R|YWHAZ_uc011lhf.1_Missense_Mutation_p.I217R|YWHAZ_uc003yjw.2_Missense_Mutation_p.I217R|YWHAZ_uc010mbq.2_Missense_Mutation_p.I140R|YWHAZ_uc011lhg.1_Missense_Mutation_p.I97R|YWHAZ_uc010mbr.2_Missense_Mutation_p.I217R|YWHAZ_uc003yjx.2_Missense_Mutation_p.I217R|YWHAZ_uc003yjy.2_Missense_Mutation_p.I217R	NM_001135702	NP_001129174	P63104	1433Z_HUMAN	tyrosine 3/tryptophan 5 -monooxygenase	217					anti-apoptosis|mRNA metabolic process|platelet activation|signal transduction	cytosol|melanosome	transcription factor binding				0	all_cancers(14;7.43e-06)|all_epithelial(15;2.77e-08)|Lung NSC(17;6.08e-05)|all_lung(17;0.000197)		Epithelial(11;2.79e-11)|all cancers(13;5.45e-09)|OV - Ovarian serous cystadenocarcinoma(57;4.75e-05)		Ginkgo biloba(DB01381)	TAATTGCATTATTAGCGTGCT	0.333													39	59					0	0	0.009718	0	0	
LRP12	29967	broad.mit.edu	37	8	105503072	105503072	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:105503072T>C	uc003yma.2	-	7	2504	c.2409A>G	c.(2407-2409)GGA>GGG	p.G803G	LRP12_uc003ymb.2_Silent_p.G784G|LRP12_uc003ylz.2_Silent_p.G209G	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	803	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TAAGCCCTTGTCCTTGATCTG	0.448													37	50					0	0	0.019004	0	0	
RSPO2	340419	broad.mit.edu	37	8	109001352	109001352	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:109001352C>G	uc003yms.2	-	3	873	c.215G>C	c.(214-216)GGA>GCA	p.G72A	RSPO2_uc003ymq.2_Missense_Mutation_p.G5A|RSPO2_uc003ymr.2_Intron	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	72					Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			CAGGCACTCTCCATACTGGCG	0.478													14	24					0	0	0.016723	0	0	
CSMD3	114788	broad.mit.edu	37	8	113694863	113694863	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:113694863A>G	uc003ynu.2	-	16	2644	c.2485T>C	c.(2485-2487)TTT>CTT	p.F829L	CSMD3_uc003yns.2_Missense_Mutation_p.F101L|CSMD3_uc003ynt.2_Missense_Mutation_p.F789L|CSMD3_uc011lhx.1_Missense_Mutation_p.F725L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	829	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTATGTCCAAATGCTTTAGAA	0.353										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			28	44					0	0	0.005443	0	0	
FLJ43860	389690	broad.mit.edu	37	8	142506543	142506543	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr8:142506543C>A	uc003ywi.2	-	2	220	c.139G>T	c.(139-141)GAC>TAC	p.D47Y	FLJ43860_uc011ljs.1_5'Flank|FLJ43860_uc010meu.1_5'Flank	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	47							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CGGGCAGAGTCCTGGTGTACC	0.577													13	22					1.05317e-09	1.10718e-09	0.020292	1	0	
FRMPD1	22844	broad.mit.edu	37	9	37745995	37745995	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:37745995T>G	uc004aag.1	+	16	4010	c.3966T>G	c.(3964-3966)AAT>AAG	p.N1322K	FRMPD1_uc004aah.1_Missense_Mutation_p.N1322K	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1322						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CAGGCATGAATGAGATGGTGG	0.537													37	57					0	0	0.019004	0	0	
ALDH1B1	219	broad.mit.edu	37	9	38397141	38397141	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:38397141G>A	uc004aay.2	+	2	1508	c.1396G>A	c.(1396-1398)GGG>AGG	p.G466R		NM_000692	NP_000683	P30837	AL1B1_HUMAN	aldehyde dehydrogenase 1B1 precursor	466					carbohydrate metabolic process	mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity			skin(1)	1				GBM - Glioblastoma multiforme(29;0.043)|Lung(182;0.115)	NADH(DB00157)	ACTCCAGGCCGGGACCGTGTG	0.592													17	22					0	0	0.006122	0	0	
Unknown	0	broad.mit.edu	37	9	40503105	40503105	+	Missense_Mutation	SNP	G	C	C	rs149697531	by1000genomes	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:40503105G>C	uc004abr.1	-	6	820	c.577C>G	c.(577-579)CAC>GAC	p.H193D						RecName: Full=Contactin-associated protein-like 3B; AltName: Full=Cell recognition molecule Caspr3b; Flags: Precursor;																		ACCTGCGTGTGGAGGAGCTCG	0.488													7	14					0	0	0.001984	0	0	
SEMA4D	10507	broad.mit.edu	37	9	91996119	91996119	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:91996119A>T	uc004aqo.1	-	16	2161	c.1589T>A	c.(1588-1590)GTG>GAG	p.V530E	SEMA4D_uc011ltm.1_Missense_Mutation_p.V530E|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.V528E	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	530	PSI.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GTGCAGAGCCACGCAGGTCGC	0.677													15	18					0	0	0.003163	0	0	
SEMA4D	10507	broad.mit.edu	37	9	91996153	91996153	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:91996153A>G	uc004aqo.1	-	16	2127	c.1555T>C	c.(1555-1557)TAC>CAC	p.Y519H	SEMA4D_uc011ltm.1_Missense_Mutation_p.Y519H|SEMA4D_uc011ltn.1_Intron|SEMA4D_uc011lto.1_Intron|SEMA4D_uc004aqp.1_Missense_Mutation_p.Y517H	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	519	PSI.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						CAGGCGCAGTAGGGGTCCCGC	0.692													10	16					0	0	0.008291	0	0	
OR13C9	286362	broad.mit.edu	37	9	107380453	107380453	+	Missense_Mutation	SNP	T	A	A	rs144981085		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:107380453T>A	uc011lvr.1	-	1	33	c.33A>T	c.(31-33)GAA>GAT	p.E11D		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCAGAAAAAATTCCACCAGAA	0.343													29	58					0	0	0.010818	0	0	
ZBTB26	57684	broad.mit.edu	37	9	125681733	125681733	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:125681733G>A	uc004bnj.2	-	2	693	c.481C>T	c.(481-483)CAG>TAG	p.Q161*	ZBTB26_uc004bnk.2_Nonsense_Mutation_p.Q161*	NM_020924	NP_065975	Q9HCK0	ZBT26_HUMAN	zinc finger and BTB domain containing 26	161					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGTGAGTCCTGCTTTGGGGAG	0.448													36	35					0	0	0.005524	0	0	
MIR602	693187	broad.mit.edu	37	9	140732882	140732882	+	RNA	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr9:140732882G>A	hsa-mir-602|MI0003615	+			c.12G>A																				0						TCTCACCCCCGCCTGACACGG	0.577													65	82					0	0	0.014410	0	0	
MAGEB4	4115	broad.mit.edu	37	X	30260943	30260943	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:30260943G>A	uc004dcb.2	+	1	775	c.691G>A	c.(691-693)GAT>AAT	p.D231N	MAGEB1_uc004dcc.2_5'Flank|MAGEB1_uc004dcd.2_5'Flank	NM_002367	NP_002358	O15481	MAGB4_HUMAN	melanoma antigen family B, 4	231	MAGE.									ovary(1)	1						GGGGATCTATGATGGAAAGAG	0.473													7	95					0	0	0.001984	0	0	
FAM47A	158724	broad.mit.edu	37	X	34148536	34148536	+	Silent	SNP	A	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:34148536A>G	uc004ddg.2	-	1	1893	c.1860T>C	c.(1858-1860)GCT>GCC	p.A620A		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	620										ovary(4)|central_nervous_system(1)	5						ATTCTTCATCAGCTCCCAGGT	0.438													28	71					0	0	0.004656	0	0	
FAM47C	442444	broad.mit.edu	37	X	37028756	37028756	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:37028756G>A	uc004ddl.1	+	1	2287	c.2273G>A	c.(2272-2274)CGC>CAC	p.R758H		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	758										ovary(3)	3						CTTGAGACTCGCGTATCTCAT	0.637													88	62					0	0	0.014410	0	0	
WDR45	11152	broad.mit.edu	37	X	48934088	48934088	+	Splice_Site	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:48934088C>T	uc004dmk.1	-	6	608	c.436_splice	c.e6+1	p.G146_splice	PRAF2_uc004dmi.2_5'Flank|PRAF2_uc011mmt.1_Intron|WDR45_uc004dmj.1_Splice_Site_p.A96_splice|WDR45_uc004dml.1_Splice_Site_p.G147_splice|WDR45_uc004dmm.1_Splice_Site_p.G111_splice|WDR45_uc010nim.1_Splice_Site_p.G146_splice|WDR45_uc004dmn.1_Splice_Site_p.G37_splice|WDR45_uc004dmo.1_Splice_Site_p.G169_splice|WDR45_uc004dmp.1_Splice_Site_p.G147_splice	NM_001029896	NP_001025067	Q9Y484	WIPI4_HUMAN	WD repeat domain 45 isoform 2						autophagy|response to starvation	organelle membrane	phosphatidylinositol-3,5-bisphosphate binding			ovary(1)	1						AGCCCTCTCACCCTTGGGGTT	0.532													114	10					0	0	0.014410	0	0	
AR	367	broad.mit.edu	37	X	66941680	66941680	+	Missense_Mutation	SNP	G	A	A	rs137852572		TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:66941680G>A	uc004dwu.1	+	6	3439	c.2324G>A	c.(2323-2325)CGC>CAC	p.R775H	AR_uc004dwv.1_Missense_Mutation_p.R243H	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	774	Ligand-binding.|Interaction with MYST2.		R -> H (in AIS and PAIS; almost complete loss of androgen binding).|R -> C (in AIS; loss of androgen binding; frequent mutation).		cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	CCCAGGTACCGCATGCACAAG	0.517									Androgen_Insensitivity_Syndrome				32	76					0	0	0.013726	0	0	
FAM155B	27112	broad.mit.edu	37	X	68749751	68749751	+	Silent	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:68749751G>C	uc004dxk.2	+	3	1419	c.1371G>C	c.(1369-1371)GGG>GGC	p.G457G		NM_015686	NP_056501	O75949	F155B_HUMAN	transmembrane protein 28	458	Poly-Gly.					integral to membrane				ovary(1)|breast(1)	2						GGGGATTGGGGCTGGAGACAC	0.627													18	18					0	0	0.007413	0	0	
AWAT2	158835	broad.mit.edu	37	X	69261763	69261763	+	Silent	SNP	G	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:69261763G>A	uc004dxt.1	-	7	903	c.897C>T	c.(895-897)ATC>ATT	p.I299I		NM_001002254	NP_001002254	Q6E213	AWAT2_HUMAN	wax synthase 2	299						endoplasmic reticulum membrane|integral to membrane	long-chain-alcohol O-fatty-acyltransferase activity				0						ATTTAGCCACGATCTCCTGGC	0.468													60	38					0	0	0.014410	0	0	
GDPD2	54857	broad.mit.edu	37	X	69646220	69646220	+	Splice_Site	SNP	G	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:69646220G>C	uc004dyh.2	+	6	615	c.364_splice	c.e6-1	p.V122_splice	GDPD2_uc010nkx.1_Splice_Site_p.V122_splice|GDPD2_uc010nky.1_Splice_Site|GDPD2_uc011mpk.1_Splice_Site_p.V122_splice|GDPD2_uc011mpl.1_Splice_Site_p.V43_splice|GDPD2_uc011mpm.1_Splice_Site_p.V43_splice	NM_017711	NP_060181	Q9HCC8	GDPD2_HUMAN	osteoblast differentiation promoting factor						glycerol metabolic process|lipid metabolic process	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	glycerophosphodiester phosphodiesterase activity|glycerophosphoinositol inositolphosphodiesterase activity|metal ion binding			ovary(2)	2	Renal(35;0.156)					TGGCCCCCCAGGTGCTGCTGC	0.582													8	14					0	0	0.006214	0	0	
PHKA1	5255	broad.mit.edu	37	X	71932636	71932636	+	Silent	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:71932636G>T	uc004eax.3	-	2	523	c.222C>A	c.(220-222)GCC>GCA	p.A74A	PHKA1_uc004eay.3_Silent_p.A74A|PHKA1_uc011mqi.1_Silent_p.A74A	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	74					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CCAATTCATAGGCCTTTGCCT	0.498													15	36					1.52009e-12	1.6188e-12	0.003163	1	0	
ZCCHC13	389874	broad.mit.edu	37	X	73524221	73524221	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:73524221C>T	uc004ebs.3	+	1	197	c.120C>T	c.(118-120)TCC>TCT	p.S40S		NM_203303	NP_976048	Q8WW36	ZCH13_HUMAN	zinc finger, CCHC domain containing 13	40							nucleic acid binding|zinc ion binding				0						AATGTGGTTCCACCACCCTAT	0.562													32	25					0	0	0.010818	0	0	
ATRX	546	broad.mit.edu	37	X	76938019	76938019	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:76938019T>G	uc004ecp.3	-	9	2961	c.2729A>C	c.(2728-2730)AAG>ACG	p.K910T	ATRX_uc004ecq.3_Missense_Mutation_p.K872T|ATRX_uc004eco.3_Missense_Mutation_p.K695T|ATRX_uc004ecr.2_Missense_Mutation_p.K842T|ATRX_uc010nlx.1_Missense_Mutation_p.K881T|ATRX_uc010nly.1_Missense_Mutation_p.K855T	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	910					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TTGCTGCTTCTTAGGAAGTCG	0.408			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						116	294					0	0	0.014410	0	0	
BRWD3	254065	broad.mit.edu	37	X	79955467	79955467	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:79955467T>A	uc004edt.2	-	25	3195	c.2932A>T	c.(2932-2934)ATG>TTG	p.M978L	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.M574L|BRWD3_uc004edp.2_Missense_Mutation_p.M807L|BRWD3_uc004edq.2_Missense_Mutation_p.M574L|BRWD3_uc010nmj.1_Missense_Mutation_p.M574L|BRWD3_uc004edr.2_Missense_Mutation_p.M648L|BRWD3_uc004eds.2_Missense_Mutation_p.M574L|BRWD3_uc004edu.2_Missense_Mutation_p.M648L|BRWD3_uc004edv.2_Missense_Mutation_p.M574L|BRWD3_uc004edw.2_Missense_Mutation_p.M574L|BRWD3_uc004edx.2_Missense_Mutation_p.M574L|BRWD3_uc004edy.2_Missense_Mutation_p.M574L|BRWD3_uc004edz.2_Missense_Mutation_p.M648L|BRWD3_uc004eea.2_Missense_Mutation_p.M648L|BRWD3_uc004eeb.2_Missense_Mutation_p.M574L	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	978										ovary(4)	4						CTGAGATCCATTTTGTTCCAT	0.358													11	8					0	0	0.008291	0	0	
CYLC1	1538	broad.mit.edu	37	X	83129480	83129480	+	Silent	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:83129480C>T	uc004eei.1	+	4	1785	c.1764C>T	c.(1762-1764)TTC>TTT	p.F588F	CYLC1_uc004eeh.1_Silent_p.F587F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	588					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AGACTACATTCAATGAAAAAG	0.408													18	44					0	0	0.004990	0	0	
PABPC5	140886	broad.mit.edu	37	X	90691722	90691722	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:90691722C>A	uc004efg.2	+	2	1586	c.1146C>A	c.(1144-1146)TGC>TGA	p.C382*	PABPC5_uc004eff.1_Nonsense_Mutation_p.C218*	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	382						cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						GGCGCAGGTGCTGAGAATAAG	0.493													13	27					5.50884e-06	5.64656e-06	0.013537	1	0	
PCDH11X	27328	broad.mit.edu	37	X	91132325	91132325	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:91132325T>C	uc004efk.1	+	2	1931	c.1086T>C	c.(1084-1086)AAT>AAC	p.N362N	PCDH11X_uc004efl.1_Silent_p.N362N|PCDH11X_uc004efo.1_Silent_p.N362N|PCDH11X_uc010nmv.1_Silent_p.N362N|PCDH11X_uc004efm.1_Silent_p.N362N|PCDH11X_uc004efn.1_Silent_p.N362N|PCDH11X_uc004efh.1_Silent_p.N362N|PCDH11X_uc004efj.1_Silent_p.N362N	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	362	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ACATCGTCAATCCTGTCAATG	0.418													25	60					0	0	0.010771	0	0	
TCEAL7	56849	broad.mit.edu	37	X	102586597	102586597	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:102586597A>C	uc004ekc.1	+	3	479	c.266A>C	c.(265-267)AAC>ACC	p.N89T		NM_152278	NP_689491	Q9BRU2	TCAL7_HUMAN	transcription elongation factor A (SII)-like 7	89					negative regulation of NF-kappaB transcription factor activity|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				upper_aerodigestive_tract(1)	1						CTGCATTCTAACCATAGGCAT	0.065													50	137					0	0	0.014410	0	0	
MID2	11043	broad.mit.edu	37	X	107147196	107147196	+	Silent	SNP	T	G	G			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:107147196T>G	uc004enl.2	+	4	1398	c.825T>G	c.(823-825)ACT>ACG	p.T275T	MID2_uc004enk.2_Silent_p.T275T	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	275	Potential.					centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						AGGTGAATACTGCTATGCATG	0.438													21	55					0	0	0.016522	0	0	
ODZ1	10178	broad.mit.edu	37	X	123779095	123779095	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:123779095G>T	uc004euj.2	-	10	1838	c.1774C>A	c.(1774-1776)CCG>ACG	p.P592T	ODZ1_uc011muj.1_Missense_Mutation_p.P591T|ODZ1_uc010nqy.2_Missense_Mutation_p.P592T	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	592	Extracellular (Potential).|EGF-like 3.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						TGTTCTTCCGGAACGTCACAC	0.532													81	329					8.40228e-50	9.21722e-50	0.014410	1	0	
ARHGAP36	158763	broad.mit.edu	37	X	130218272	130218272	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:130218272T>C	uc004evz.2	+	5	984	c.639T>C	c.(637-639)TTT>TTC	p.F213F	ARHGAP36_uc004ewa.2_Silent_p.F201F|ARHGAP36_uc004ewb.2_Silent_p.F182F|ARHGAP36_uc004ewc.2_Silent_p.F77F	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	213					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						AAATTTCCTTTCCAATTGGCC	0.502													17	46					0	0	0.004007	0	0	
FGF13	2258	broad.mit.edu	37	X	138286220	138286220	+	Splice_Site	SNP	C	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:138286220C>T	uc011mwj.1	-	2	316	c.49_splice	c.e2+1	p.V17_splice	FGF13_uc004faq.2_Intron|FGF13_uc004far.2_Splice_Site|FGF13_uc011mwk.1_Splice_Site_p.E17_splice	NM_001139500	NP_001132972	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 2						cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GGCGGGCTTACCCTTAGAAGC	0.622													11	41					0	0	0.013537	0	0	
F9	2158	broad.mit.edu	37	X	138642958	138642958	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:138642958G>T	uc004fas.1	+	7	811	c.782G>T	c.(781-783)TGG>TTG	p.W261L	F9_uc004fat.1_Missense_Mutation_p.W223L	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	261	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	AATGAAAAATGGATTGTAACT	0.363													73	110					7.62596e-35	8.33771e-35	0.014410	1	0	
CXorf66	347487	broad.mit.edu	37	X	139038690	139038690	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:139038690T>A	uc004fbb.2	-	3	473	c.451A>T	c.(451-453)AGT>TGT	p.S151C		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	151	Ser-rich.|Cytoplasmic (Potential).					integral to membrane					0						TTTCCTGCACTGTTTGGTATG	0.413													304	161					0	0	0.014410	0	0	
MAGEC3	139081	broad.mit.edu	37	X	140984913	140984913	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:140984913G>T	uc011mwp.1	+	7	1369	c.1369G>T	c.(1369-1371)GAT>TAT	p.D457Y	MAGEC3_uc004fbs.2_Missense_Mutation_p.D159Y|MAGEC3_uc010nsj.2_Missense_Mutation_p.D159Y	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	457	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTATGCCCTGGATGAAAAGGT	0.483													86	34					2.84431e-33	3.09945e-33	0.014410	1	0	
F8	2157	broad.mit.edu	37	X	154194356	154194356	+	Silent	SNP	T	C	C			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chrX:154194356T>C	uc004fmt.2	-	9	1503	c.1332A>G	c.(1330-1332)AAA>AAG	p.K444K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	444	F5/8 type A 2.|Plastocyanin-like 3.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TAAATCGGACTTTTTTGTACT	0.378													38	150					0	0	0.005524	0	0	
FAS	355	broad.mit.edu	37	10	90773891	90773892	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr10:90773891_90773892insT	uc001kfr.2	+	9	1038_1039	c.692_693insT	c.(691-693)AAAfs	p.K231fs	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_3'UTR|FAS_uc001kft.2_Frame_Shift_Ins_p.K210fs|FAS_uc010qnb.1_RNA|FAS_uc010qnc.1_RNA|FAS_uc001kfw.2_3'UTR|FAS_uc010qnd.1_RNA|FAS_uc010qne.1_RNA|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	231	Death.|Interaction with HIPK3 (By similarity).|Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		GACTTGAGTAAATATATCACCA	0.307									Autoimmune_Lymphoproliferative_syndrome_type_I				33	56	---	---	---	---						.
CDC42BPB	9578	broad.mit.edu	37	14	103430900	103430900	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr14:103430900delC	uc001ymi.1	-	19	2897	c.2665delG	c.(2665-2667)GCCfs	p.A889fs	CDC42BPB_uc001ymj.1_Frame_Shift_Del_p.A17fs	NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	889	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		AGCTGCTTGGCCCGGATCTCC	0.637													11	12	---	---	---	---						.
THBS1	7057	broad.mit.edu	37	15	39874438	39874438	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:39874438delG	uc001zkh.2	+	3	291	c.112delG	c.(112-114)GGGfs	p.G38fs		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	38	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TGAACTCACCGGGGCCGCCCG	0.612													14	23	---	---	---	---						.
GOLGA6L5	374650	broad.mit.edu	37	15	85055733	85055735	+	RNA	DEL	CTC	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr15:85055733_85055735delCTC	uc002bkm.2	-	6		c.825_827delGAG				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CACACAGCCTCTCCTCATGTTCA	0.552													3	5	---	---	---	---						.
PIK3R4	30849	broad.mit.edu	37	3	130424447	130424451	+	Frame_Shift_Del	DEL	TCTGC	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr3:130424447_130424451delTCTGC	uc003enj.2	-	12	3467_3471	c.2886_2890delGCAGA	c.(2884-2892)AAGCAGATGfs	p.K962fs		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	962_964					fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						TTTTCCATCATCTGCTTAGCTATTC	0.424													33	76	---	---	---	---						.
FAT4	79633	broad.mit.edu	37	4	126370525	126370525	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr4:126370525delC	uc003ifj.3	+	9	8354	c.8354delC	c.(8353-8355)TCCfs	p.S2785fs	FAT4_uc011cgp.1_Frame_Shift_Del_p.S1083fs|FAT4_uc003ifi.1_Frame_Shift_Del_p.S263fs	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2785	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCTGAAAATTCCCCCTTAGGA	0.363													47	102	---	---	---	---						.
HIST1H1C	3006	broad.mit.edu	37	6	26056324	26056334	+	Frame_Shift_Del	DEL	TGCCTTCTTGT	-	-	rs141268909	byFrequency	TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:26056324_26056334delTGCCTTCTTGT	uc003nfw.2	-	1	366_376	c.323_333delACAAGAAGGCA	c.(322-333)AACAAGAAGGCAfs	p.N108fs		NM_005319	NP_005310	P16403	H12_HUMAN	histone cluster 1, H1c	108_111					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)|skin(2)	5						CCCCGGAGGCTGCCTTCTTGTTGAGTTTAAA	0.559													30	63	---	---	---	---						.
HECA	51696	broad.mit.edu	37	6	139488008	139488008	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:139488008delG	uc003qin.2	+	2	1144	c.859delG	c.(859-861)GGCfs	p.G287fs		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	287					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		CCACTTCAGCGGCCCCCGCTC	0.652													10	21	---	---	---	---						.
HECA	51696	broad.mit.edu	37	6	139488378	139488378	+	Frame_Shift_Del	DEL	A	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr6:139488378delA	uc003qin.2	+	2	1514	c.1229delA	c.(1228-1230)CAGfs	p.Q410fs		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	410					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		GTGTTCGAACAGTTCCCACTG	0.527													16	30	---	---	---	---						.
MLL3	58508	broad.mit.edu	37	7	151845319	151845319	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:151845319delG	uc003wla.2	-	52	13912	c.13693delC	c.(13693-13695)CAGfs	p.Q4565fs	MLL3_uc003wkz.2_Frame_Shift_Del_p.Q3683fs|MLL3_uc003wkx.2_Frame_Shift_Del_p.Q723fs|MLL3_uc003wky.2_Frame_Shift_Del_p.Q2129fs	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4565	FYR N-terminal.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCTTGCATCTGCTGTGGAAGC	0.552			N		medulloblastoma								24	44	---	---	---	---						.
MLL3	58508	broad.mit.edu	37	7	151878910	151878910	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CD-8531-01A-11D-2340-08	TCGA-CD-8531-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	7d3f6a86-acc9-489a-a234-2e8d9eaab714	043a9106-b708-4e9b-ac15-2f2e05619468	g.chr7:151878910delG	uc003wla.2	-	36	6254	c.6035delC	c.(6034-6036)CCTfs	p.P2012fs	MLL3_uc003wkz.2_Frame_Shift_Del_p.P1073fs	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2012	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATCTGCCCTAGGAGATGGTTT	0.473			N		medulloblastoma								70	99	---	---	---	---						.
