Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
H6PD	9563	broad.mit.edu	37	1	9322285	9322285	+	Silent	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:9322285A>C	uc001apt.2	+	4	1186	c.913A>C	c.(913-915)AGG>CGG	p.R305R		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	305	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	GGGCCTGCAGAGGGGCAGTGC	0.652000													8	3					0	0	0.004482	0	0	
PRAMEF4	400735	broad.mit.edu	37	1	12939698	12939698	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:12939698T>G	uc001aun.2	-	4	1175	c.1104A>C	c.(1102-1104)CAA>CAC	p.Q368H		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	368	LRR 5.									ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCGTTGACTTGGGAGTCTA	0.507000													119	163					0	0	0.014410	0	0	
MST1P9	11223	broad.mit.edu	37	1	17085373	17085373	+	Missense_Mutation	SNP	C	T	T	rs2092130	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:17085373C>T	uc010ock.1	-	10	1318	c.1318G>A	c.(1318-1320)GGG>AGG	p.G440R	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Missense_Mutation_p.M1I	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						TGGCTATCCCCATCTGGGTCT	0.602000													5	25					0	0	0.001984	0	0	
UBR4	23352	broad.mit.edu	37	1	19489100	19489100	+	Silent	SNP	C	T	T	rs145868131	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:19489100C>T	uc001bbi.2	-	35	4774	c.4770G>A	c.(4768-4770)GTG>GTA	p.V1590V	UBR4_uc001bbm.1_Silent_p.V801V	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	1590					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CCAAGATCATCACATGCTGTA	0.433000													13	21					0	0	0.013537	0	0	
MYOM3	127294	broad.mit.edu	37	1	24413270	24413270	+	Silent	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:24413270A>G	uc001bin.3	-	15	1825	c.1662T>C	c.(1660-1662)CCT>CCC	p.P554P	MYOM3_uc001bim.3_Silent_p.P211P|MYOM3_uc001bio.2_Silent_p.P554P|MYOM3_uc001bip.1_Silent_p.P211P	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	554	Fibronectin type-III 2.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGGATCTCACAGGGCTTTCCG	0.557000													4	43					0	0	0.014758	0	0	
COL16A1	1307	broad.mit.edu	37	1	32120438	32120438	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:32120438C>T	uc001btk.1	-	68	4677	c.4312G>A	c.(4312-4314)GAA>AAA	p.E1438K	COL16A1_uc001bti.1_Missense_Mutation_p.E52K|COL16A1_uc001btj.1_Missense_Mutation_p.E1236K	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1438	Nonhelical region 2 (NC2).				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		CTCTTGATTTCATCATAATTC	0.448000													55	90					0	0	0.014410	0	0	
PTPRF	5792	broad.mit.edu	37	1	44086848	44086848	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:44086848T>A	uc001cjr.2	+	33	5940	c.5600T>A	c.(5599-5601)ATG>AAG	p.M1867K	PTPRF_uc001cjs.2_Missense_Mutation_p.M1858K|PTPRF_uc001cju.2_Missense_Mutation_p.M1256K|PTPRF_uc009vwt.2_Missense_Mutation_p.M1427K|PTPRF_uc001cjv.2_Missense_Mutation_p.M1338K|PTPRF_uc001cjw.2_Missense_Mutation_p.M1093K	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1867	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GTGGTCGACATGTTTCAGACC	0.627000													7	12					0	0	0.003080	0	0	
LRRIQ3	127255	broad.mit.edu	37	1	74507054	74507054	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:74507054A>C	uc001dfy.3	-	7	1753	c.1561T>G	c.(1561-1563)TTA>GTA	p.L521V	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	521										ovary(2)	2						TCATTATTTAAGTTTTGAACT	0.368000													39	40					0	0	0.009718	0	0	
SPATA1	64173	broad.mit.edu	37	1	85009959	85009959	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:85009959A>G	uc001djz.1	+	9	1057	c.858A>G	c.(856-858)ATA>ATG	p.I286M	SPATA1_uc001djy.1_RNA	NM_001081472	NP_001074941			spermatogenesis associated 1											central_nervous_system(1)	1				Epithelial(280;4.36e-10)|all cancers(265;7.1e-09)|BRCA - Breast invasive adenocarcinoma(282;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(397;0.00286)|KIRC - Kidney renal clear cell carcinoma(1967;0.0111)		CTTCAGGAATAACTGATATAT	0.323000													4	2					0	0	0.009096	0	0	
LPPR4	9890	broad.mit.edu	37	1	99772202	99772202	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:99772202G>C	uc001dse.2	+	7	2034	c.1928G>C	c.(1927-1929)GGC>GCC	p.G643A	LPPR4_uc010oue.1_Missense_Mutation_p.G585A	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	643							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		GAAGGTGAAGGCAGTGGCTCC	0.537000													7	15					0	0	0.001984	0	0	
FLG2	388698	broad.mit.edu	37	1	152327439	152327439	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:152327439A>C	uc001ezw.3	-	3	2896	c.2823T>G	c.(2821-2823)AGT>AGG	p.S941R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	941	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTGTCCTGAACTTGACCCAT	0.493000													110	353					0	0	0.014410	0	0	
CD1C	911	broad.mit.edu	37	1	158259869	158259869	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:158259869G>A	uc001fru.2	+	1	307	c.15G>A	c.(13-15)CAG>CAA	p.Q5Q	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	5					antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TGTTTCTGCAGTTTCTGCTGC	0.448000													26	56					0	0	0.005443	0	0	
CD1B	910	broad.mit.edu	37	1	158298772	158298772	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:158298772C>G	uc001frx.2	-	5	1027	c.919G>C	c.(919-921)GCA>CCA	p.A307P	CD1B_uc001frw.2_Missense_Mutation_p.A145P	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	307	Helical; (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					ACTATTATTGCCAAAACAATT	0.428000													11	54					0	0	0.010729	0	0	
OR6Y1	391112	broad.mit.edu	37	1	158517014	158517014	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:158517014A>C	uc010pil.1	-	1	882	c.882T>G	c.(880-882)ATT>ATG	p.I294M		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	294	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TCAGACAGTAAATGATGGGGT	0.453000													31	70					0	0	0.010818	0	0	
OR10J3	441911	broad.mit.edu	37	1	159283665	159283665	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:159283665T>G	uc010piu.1	-	1	785	c.785A>C	c.(784-786)AAG>ACG	p.K262T		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GGACTTAGGCTTCAGGTAGAT	0.532000													28	76					0	0	0.004656	0	0	
OR10J3	441911	broad.mit.edu	37	1	159284373	159284373	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:159284373A>C	uc010piu.1	-	1	77	c.77T>G	c.(76-78)CTT>CGT	p.L26R		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					AAAGAAGACAAGTTTGTGCTG	0.448000													48	133					0	0	0.014410	0	0	
OLFML2B	25903	broad.mit.edu	37	1	161987209	161987209	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:161987209C>T	uc001gbu.2	-	3	951	c.527G>A	c.(526-528)CGA>CAA	p.R176Q	OLFML2B_uc010pkq.1_Missense_Mutation_p.R176Q	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	176										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TTTATCCACTCGCCCCACCAG	0.438000													45	35					0	0	0.013114	0	0	
DDR2	4921	broad.mit.edu	37	1	162741933	162741933	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:162741933G>A	uc001gcf.2	+	14	2089	c.1624G>A	c.(1624-1626)GCC>ACC	p.A542T	DDR2_uc001gcg.2_Missense_Mutation_p.A542T	NM_001014796	NP_001014796	Q16832	DDR2_HUMAN	discoidin domain receptor family, member 2	542	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(2)|central_nervous_system(2)|ovary(1)|kidney(1)	6	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.113)			CTCAGTGCCTGCCGTCACCAT	0.562000													11	22					0	0	0.010729	0	0	
SELP	6403	broad.mit.edu	37	1	169562867	169562867	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:169562867G>A	uc001ggi.3	-	14	2448	c.2383C>T	c.(2383-2385)CTA>TTA	p.L795L	SELP_uc001ggh.2_Intron|SELP_uc009wvr.2_Silent_p.L794L	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	795	Helical; (Potential).				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CGCTTTCTTAGCAAAGCCAGG	0.423000													17	43					0	0	0.006122	0	0	
TNN	63923	broad.mit.edu	37	1	175046771	175046771	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:175046771T>C	uc001gkl.1	+	2	330	c.217T>C	c.(217-219)TTG>CTG	p.L73L	TNN_uc010pmx.1_Silent_p.L73L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	73					cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GGCTTCGCTCTTGGCCCTGGG	0.592000													12	34					0	0	0.010729	0	0	
PAPPA2	60676	broad.mit.edu	37	1	176681096	176681096	+	Silent	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:176681096A>G	uc001gkz.2	+	12	4941	c.3777A>G	c.(3775-3777)AAA>AAG	p.K1259K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1259					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCCTGAAGAAAGAGGATGAGG	0.398000													26	48					0	0	0.021523	0	0	
KCNT2	343450	broad.mit.edu	37	1	196227371	196227371	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:196227371A>G	uc001gtd.1	-	26	3224	c.3164T>C	c.(3163-3165)CTT>CCT	p.L1055P	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.L988P|KCNT2_uc001gtf.1_Missense_Mutation_p.L1031P|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.L559P	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1055	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						ATTTTTCACAAGTTCAGCAAG	0.403000													22	64					0	0	0.018920	0	0	
KCNT2	343450	broad.mit.edu	37	1	196250004	196250004	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:196250004G>T	uc001gtd.1	-	25	2956	c.2896C>A	c.(2896-2898)CTT>ATT	p.L966I	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.L892I|KCNT2_uc001gtf.1_Missense_Mutation_p.L942I|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.L942I|KCNT2_uc001gth.1_Missense_Mutation_p.L463I	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	966	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GATGTAGTAAGTTTCTGAGAC	0.328000													17	36					3.32936e-07	3.42904e-07	0.006122	1	0	
FMOD	2331	broad.mit.edu	37	1	203317143	203317143	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:203317143A>G	uc001gzr.2	-	2	392	c.256T>C	c.(256-258)TTC>CTC	p.F86L	FMOD_uc010pqi.1_RNA	NM_002023	NP_002014	Q06828	FMOD_HUMAN	fibromodulin precursor	86	Cys-rich.|LRRNT.				transforming growth factor beta receptor complex assembly	extracellular space|proteinaceous extracellular matrix				ovary(2)|breast(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.171)			GCCGTGGGGAAGTTGGGTGGG	0.587000													8	18					0	0	0.004482	0	0	
PCNXL2	80003	broad.mit.edu	37	1	233344423	233344423	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:233344423T>G	uc001hvl.2	-	13	2939	c.2704A>C	c.(2704-2706)ATC>CTC	p.I902L	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA|PCNXL2_uc001hvq.1_Missense_Mutation_p.I201L	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	902	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TATGTTATGATTTGGTTGTGT	0.368000													16	39					0	0	0.003163	0	0	
RYR2	6262	broad.mit.edu	37	1	237608821	237608821	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr1:237608821A>T	uc001hyl.1	+	14	1411	c.1291A>T	c.(1291-1293)AGG>TGG	p.R431W		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	431	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TAGATTTATAAGGTACTTTTT	0.363000													6	34					0	0	0.021553	0	0	
LARP4B	23185	broad.mit.edu	37	10	888940	888940	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:888940G>A	uc001ifs.1	-	6	619	c.578C>T	c.(577-579)ACG>ATG	p.T193M		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	193	HTH La-type RNA-binding.						nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						GTTAGCCACCGTTGTGATTGG	0.378000													12	34					0	0	0.010729	0	0	
ITIH5	80760	broad.mit.edu	37	10	7618705	7618705	+	Silent	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:7618705T>G	uc001ijq.2	-	10	1768	c.1689A>C	c.(1687-1689)GGA>GGC	p.G563G	ITIH5_uc001ijp.2_Silent_p.G349G|ITIH5_uc001ijr.1_Silent_p.G563G	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	563					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CTCCATCGCCTCCAGGCCTGG	0.572000													25	31					0	0	0.021523	0	0	
PTF1A	256297	broad.mit.edu	37	10	23481522	23481522	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:23481522C>T	uc001irp.2	+	1	63	c.63C>T	c.(61-63)TTC>TTT	p.F21F		NM_178161	NP_835455	Q7RTS3	PTF1A_HUMAN	pancreas specific transcription factor, 1a	21					endocrine pancreas development|exocrine pancreas development|regulation of transcription, DNA-dependent|tissue development|transcription, DNA-dependent	cytoplasm|transcription factor complex				pancreas(1)|skin(1)	2						CTTCGTACTTCGACGAGGACG	0.667000													13	46					0	0	0.020292	0	0	
GPR158	57512	broad.mit.edu	37	10	25888082	25888082	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:25888082T>G	uc001isj.2	+	11	3587	c.3527T>G	c.(3526-3528)TTT>TGT	p.F1176C	GPR158_uc001isk.2_Missense_Mutation_p.F551C	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1176	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CCTTGGGAGTTTGAGACCCCA	0.453000													17	28					0	0	0.004007	0	0	
MYO3A	53904	broad.mit.edu	37	10	26432425	26432425	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:26432425G>A	uc001isn.2	+	21	2671	c.2311G>A	c.(2311-2313)GAT>AAT	p.D771N	MYO3A_uc009xko.1_Missense_Mutation_p.D771N|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	771	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TGAATATGAGGATAACTGGCC	0.358000													13	30					0	0	0.013537	0	0	
ANK3	288	broad.mit.edu	37	10	61832206	61832206	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:61832206T>G	uc001jky.2	-	37	8625	c.8433A>C	c.(8431-8433)AAA>AAC	p.K2811N	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2811					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CAGTTCTCTGTTTTTTCACAT	0.368000													33	65					0	0	0.013726	0	0	
ANK3	288	broad.mit.edu	37	10	61834976	61834976	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:61834976T>G	uc001jky.2	-	37	5855	c.5663A>C	c.(5662-5664)AAG>ACG	p.K1888T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1888	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGTAGACAACTTAAGGGCAGA	0.433000													28	57					0	0	0.006320	0	0	
JMJD1C	221037	broad.mit.edu	37	10	64974609	64974609	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:64974609C>T	uc001jmn.2	-	8	1618	c.1318G>A	c.(1318-1320)GAT>AAT	p.D440N	JMJD1C_uc001jml.2_Missense_Mutation_p.D221N|JMJD1C_uc001jmm.2_Missense_Mutation_p.D152N|JMJD1C_uc010qiq.1_Missense_Mutation_p.D258N|JMJD1C_uc009xpi.2_Missense_Mutation_p.D258N|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmp.1_Missense_Mutation_p.D152N	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	440					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TGTTTTTTATCTTCCTGTATT	0.393000													30	81					0	0	0.008361	0	0	
CUZD1	50624	broad.mit.edu	37	10	124594423	124594423	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:124594423T>A	uc001lgq.2	-	7	1513	c.1181A>T	c.(1180-1182)AAC>ATC	p.N394I	CUZD1_uc001lgp.2_Missense_Mutation_p.N113I|CUZD1_uc009yad.2_Missense_Mutation_p.N113I|CUZD1_uc009yaf.2_Missense_Mutation_p.N28I|CUZD1_uc001lgr.2_Missense_Mutation_p.N113I|CUZD1_uc010qty.1_Missense_Mutation_p.N113I|CUZD1_uc009yae.2_Missense_Mutation_p.N113I|CUZD1_uc001lgs.2_Missense_Mutation_p.N394I|CUZD1_uc010qtz.1_Missense_Mutation_p.N394I	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	394	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		CATGCTGGTGTTATATTTGCC	0.318000													26	50					0	0	0.018920	0	0	
LOC653544	653544	broad.mit.edu	37	10	135491113	135491113	+	Missense_Mutation	SNP	G	T	T	rs150899513	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr10:135491113G>T	uc010qvi.1	+	1	835	c.724G>T	c.(724-726)GCC>TCC	p.A242S		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	242						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGTCGCCTTCGCCCACACCGG	0.776000													4	3					0.00909568	0.00914887	0.009096	1	0	
LRDD	55367	broad.mit.edu	37	11	799408	799408	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:799408G>A	uc001lro.1	-	16	2774	c.2632C>T	c.(2632-2634)CGC>TGC	p.R878C	SLC25A22_uc009yci.2_5'Flank|SLC25A22_uc001lrj.2_5'Flank|LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Missense_Mutation_p.R861C|LRDD_uc001lrl.1_Missense_Mutation_p.R721C|LRDD_uc001lrm.1_Missense_Mutation_p.R565C|LRDD_uc001lrn.1_Missense_Mutation_p.R721C|LRDD_uc001lrp.1_3'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	878					apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TGGTACTTGCGGCGGCCGAGC	0.701000													21	40					0	0	0.010504	0	0	
OR51F1	256892	broad.mit.edu	37	11	4790367	4790367	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:4790367A>G	uc010qyl.1	-	1	781	c.781T>C	c.(781-783)TCC>CCC	p.S261P		NM_001004752	NP_001004752	A6NLW9	A6NLW9_HUMAN	olfactory receptor, family 51, subfamily F,	261						integral to membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.87e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0045)|LUSC - Lung squamous cell carcinoma(625;0.192)		TACACCAAGGACAGGCTCAGC	0.522000													26	57					0	0	0.018920	0	0	
OR51S1	119692	broad.mit.edu	37	11	4869842	4869842	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:4869842T>C	uc010qyo.1	-	1	597	c.597A>G	c.(595-597)GAA>GAG	p.E199E		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	199	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		CACCCCAAGCTTCTGGGCAGG	0.542000													24	61					0	0	0.021523	0	0	
OR51G1	79324	broad.mit.edu	37	11	4945136	4945136	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:4945136T>A	uc010qyr.1	-	1	434	c.434A>T	c.(433-435)AAG>ATG	p.K145M		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TAGCCCCATCTTGACAATACA	0.532000													17	40					0	0	0.004007	0	0	
OR51A4	401666	broad.mit.edu	37	11	4967541	4967541	+	Missense_Mutation	SNP	G	A	A	rs147925897	byFrequency	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:4967541G>A	uc010qys.1	-	1	790	c.790C>T	c.(790-792)CGC>TGC	p.R264C		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CGGGCAAAGCGGTGGACAACG	0.458000													23	213					0	0	0.016522	0	0	
OR52H1	390067	broad.mit.edu	37	11	5565929	5565929	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:5565929A>T	uc010qzh.1	-	1	825	c.825T>A	c.(823-825)AAT>AAA	p.N275K	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	275	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCGAGAGACATTGTGTCCAA	0.493000													27	63					0	0	0.005443	0	0	
OR10A3	26496	broad.mit.edu	37	11	7960149	7960149	+	Silent	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:7960149T>G	uc010rbi.1	-	1	919	c.919A>C	c.(919-921)AGA>CGA	p.R307R		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		ATCACTTTTCTTCGCCATAGT	0.393000													13	43					0	0	0.013537	0	0	
Unknown	0	broad.mit.edu	37	11	31086653	31086653	+	Missense_Mutation	SNP	T	G	G	rs144828307		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:31086653T>G	uc009yjk.1	-	7	759	c.690A>C	c.(688-690)CAA>CAC	p.Q230H	uc009yjl.1_Missense_Mutation_p.Q158H|DCDC1_uc001msu.1_Missense_Mutation_p.Q401H					RecName: Full=Doublecortin domain-containing protein 5;																		TCACATCTACTTGTGCATTTA	0.433000													10	37					0	0	0.006214	0	0	
OR4A47	403253	broad.mit.edu	37	11	48511002	48511002	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:48511002T>G	uc010rhx.1	+	1	658	c.658T>G	c.(658-660)TTG>GTG	p.L220V		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGTGTCATCTTGCACTCTTT	0.463000													36	78					0	0	0.013726	0	0	
OR4A5	81318	broad.mit.edu	37	11	51412307	51412307	+	Nonsense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:51412307A>T	uc001nhi.1	-	1	89	c.89T>A	c.(88-90)TTA>TAA	p.L30*		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				GTATGTGAGTAAAAACATGAC	0.423000													15	37					0	0	0.004007	0	0	
OR4P4	81300	broad.mit.edu	37	11	55406423	55406423	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:55406423T>G	uc010rij.1	+	1	590	c.590T>G	c.(589-591)GTC>GGC	p.V197G		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	197	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GGTCTCTTAGTCATTGCTAAT	0.368000													29	33					0	0	0.005443	0	0	
OR5D14	219436	broad.mit.edu	37	11	55563048	55563048	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:55563048G>T	uc010rim.1	+	1	17	c.17G>T	c.(16-18)AGG>ATG	p.R6M		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				ATGGTTTTAAGGAATCTGAGC	0.393000													44	89					2.00842e-17	2.1324e-17	0.010771	1	0	
OR8J3	81168	broad.mit.edu	37	11	55904446	55904446	+	Missense_Mutation	SNP	A	C	C	rs146359186	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:55904446A>C	uc010riz.1	-	1	749	c.749T>G	c.(748-750)GTT>GGT	p.V250G		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CCCATAGAAAACCGTGACTGC	0.403000													24	69					0	0	0.021523	0	0	
OR8K1	390157	broad.mit.edu	37	11	56113874	56113874	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:56113874T>G	uc010rjg.1	+	1	360	c.360T>G	c.(358-360)ATT>ATG	p.I120M		NM_001002907	NP_001002907	Q8NGG5	OR8K1_HUMAN	olfactory receptor, family 8, subfamily K,	120	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					AGCTCTTTATTCTATCAGCAA	0.393000										HNSCC(65;0.19)			66	181					0	0	0.014410	0	0	
P2RX3	5024	broad.mit.edu	37	11	57114108	57114108	+	Silent	SNP	C	T	T	rs149738072		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:57114108C>T	uc001nju.2	+	2	286	c.210C>T	c.(208-210)TAC>TAT	p.Y70Y		NM_002559	NP_002550	P56373	P2RX3_HUMAN	purinergic receptor P2X3	70	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CCGGACTCTACGCCAACAGAG	0.572000													10	29					0	0	0.006214	0	0	
AHNAK	79026	broad.mit.edu	37	11	62287621	62287621	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:62287621G>A	uc001ntl.2	-	5	14568	c.14268C>T	c.(14266-14268)GAC>GAT	p.D4756D	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4756					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GGCCCTTGATGTCAGCTTCTG	0.502000													77	188					0	0	0.014410	0	0	
CCDC88B	283234	broad.mit.edu	37	11	64109148	64109148	+	Silent	SNP	G	A	A	rs139000172		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:64109148G>A	uc001nzy.2	+	7	653	c.609G>A	c.(607-609)GAG>GAA	p.E203E	CCDC88B_uc009ypo.1_Silent_p.E200E|CCDC88B_uc001nzz.1_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	203					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						CCGAGCTGGAGATGCTGTCCC	0.692000													3	22					0	0	0.004672	0	0	
MAP4K2	5871	broad.mit.edu	37	11	64564487	64564487	+	Silent	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:64564487G>C	uc001obh.2	-	20	1466	c.1374C>G	c.(1372-1374)TCC>TCG	p.S458S	MAP4K2_uc001obg.2_5'Flank|MAP4K2_uc001obi.2_Silent_p.S450S	NM_004579	NP_004570	Q12851	M4K2_HUMAN	mitogen-activated protein kinase kinase kinase	458					activation of JUN kinase activity|immune response|positive regulation of JNK cascade|vesicle targeting	basolateral plasma membrane|Golgi membrane|soluble fraction	ATP binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(1)|pancreas(1)	2						GCCCGTGGCAGGATGACCTCT	0.637000													15	37					0	0	0.003163	0	0	
NUMA1	4926	broad.mit.edu	37	11	71733400	71733400	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:71733400A>T	uc001orl.1	-	7	529	c.357T>A	c.(355-357)TTT>TTA	p.F119L	NUMA1_uc001ork.1_Missense_Mutation_p.F119L|NUMA1_uc001orm.1_Missense_Mutation_p.F119L|NUMA1_uc009ysx.1_Missense_Mutation_p.F119L|NUMA1_uc001oro.1_Missense_Mutation_p.F119L|NUMA1_uc009ysy.1_Missense_Mutation_p.F119L|NUMA1_uc001orp.2_Missense_Mutation_p.F119L|NUMA1_uc001orq.2_Missense_Mutation_p.F119L	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	119					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						TTTTATATTCAAACTGTTCCC	0.493000			T	RARA	APL								42	142					0	0	0.011902	0	0	
USP35	57558	broad.mit.edu	37	11	77921035	77921035	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:77921035G>A	uc009yva.1	+	10	2380	c.2134G>A	c.(2134-2136)GTG>ATG	p.V712M	USP35_uc001oze.2_Missense_Mutation_p.V468M|USP35_uc001ozc.2_Missense_Mutation_p.V280M|USP35_uc010rsp.1_Missense_Mutation_p.V144M|USP35_uc001ozd.2_Missense_Mutation_p.V323M|USP35_uc001ozf.2_Missense_Mutation_p.V443M	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35	712					ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			agaggaggaggtggaagagga	0.124000													10	16					0	0	0.006214	0	0	
PICALM	8301	broad.mit.edu	37	11	85712081	85712081	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:85712081T>C	uc001pbm.2	-	10	1300	c.1014A>G	c.(1012-1014)TTA>TTG	p.L338L	PICALM_uc001pbl.2_Silent_p.L338L|PICALM_uc001pbn.2_Silent_p.L338L|PICALM_uc010rtl.1_Silent_p.L287L|PICALM_uc010rtk.1_5'UTR|PICALM_uc001pbo.1_5'UTR	NM_007166	NP_009097	Q13492	PICAL_HUMAN	phosphatidylinositol-binding clathrin assembly	338					clathrin coat assembly|endosome transport|negative regulation of receptor-mediated endocytosis|positive regulation of transcription, DNA-dependent|receptor internalization|regulation of protein localization	clathrin coat|clathrin-coated vesicle|coated pit|Golgi apparatus|nucleus|postsynaptic membrane|presynaptic membrane	1-phosphatidylinositol binding|clathrin heavy chain binding			urinary_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(157;7.42e-07)|all_hematologic(158;0.00092)				AACTTACCTTTAAAGCTTTCA	0.428000			T	MLLT10|MLL	TALL|AML|								61	139					0	0	0.014410	0	0	
GRM5	2915	broad.mit.edu	37	11	88781002	88781002	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:88781002T>C	uc001pcq.2	-	1	239	c.39A>G	c.(37-39)AAA>AAG	p.K13K	GRM5_uc009yvm.2_Silent_p.K13K|GRM5_uc009yvn.1_Silent_p.K13K	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	13					activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GGACATCTTCTTTCAAAAGTA	0.473000													8	37					0	0	0.006214	0	0	
PGR	5241	broad.mit.edu	37	11	100999459	100999459	+	Silent	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:100999459A>G	uc001pgh.2	-	1	1086	c.343T>C	c.(343-345)TTG>CTG	p.L115L	PGR_uc001pgi.2_Silent_p.L115L|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	115	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	AGAGTGTCCAAGACACTGTCC	0.627000													3	15					0	0	0.004672	0	0	
DDI1	414301	broad.mit.edu	37	11	103908222	103908222	+	Silent	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:103908222A>G	uc001phr.2	+	1	915	c.672A>G	c.(670-672)GAA>GAG	p.E224E	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	224					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		AAAACATTGAAGAAAACATGA	0.478000													43	82					0	0	0.008740	0	0	
RDX	5962	broad.mit.edu	37	11	110126036	110126036	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:110126036T>G	uc001pku.2	-	8	1083	c.773A>C	c.(772-774)AAG>ACG	p.K258T	RDX_uc009yxx.1_RNA|RDX_uc009yxy.2_Missense_Mutation_p.K258T|RDX_uc009yxz.2_Intron|RDX_uc009yya.2_Intron|RDX_uc010rwe.1_Missense_Mutation_p.K122T	NM_002906	NP_002897	P35241	RADI_HUMAN	radixin	258	FERM.				actin filament capping	cleavage furrow|cytoskeleton|extrinsic to membrane|Golgi apparatus|nucleolus|plasma membrane	actin binding				0		all_cancers(61;7.18e-13)|all_epithelial(67;2.61e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.13e-06)|BRCA - Breast invasive adenocarcinoma(274;9.75e-06)|all cancers(92;5.9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0248)		GTCGATTGGCTTTATAACAAA	0.284000													8	35					0	0	0.003080	0	0	
ZBTB16	7704	broad.mit.edu	37	11	113934258	113934258	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:113934258C>G	uc001pop.2	+	2	500	c.236C>G	c.(235-237)ACC>AGC	p.T79S	ZBTB16_uc001poo.1_Missense_Mutation_p.T79S|ZBTB16_uc001poq.2_Missense_Mutation_p.T79S	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	79	BTB.				apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		TCGCCAAAGACCTTCCAGCAG	0.557000													8	43					0	0	0.003080	0	0	
PHLDB1	23187	broad.mit.edu	37	11	118509945	118509945	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:118509945G>A	uc001ptr.1	+	13	3065	c.2712G>A	c.(2710-2712)CCG>CCA	p.P904P	PHLDB1_uc001pts.2_Silent_p.P904P|PHLDB1_uc001ptt.2_Silent_p.P904P|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Silent_p.P704P|PHLDB1_uc001ptw.1_Silent_p.P306P|PHLDB1_uc009zai.1_5'UTR|PHLDB1_uc001ptx.1_5'UTR|PHLDB1_uc010ryi.1_5'Flank|PHLDB1_uc010ryj.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	904											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GGCCTTTCCCGAAGACCACAT	0.552000													14	52					0	0	0.020292	0	0	
GRAMD1B	57476	broad.mit.edu	37	11	123477446	123477446	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:123477446T>G	uc001pyx.2	+	10	1353	c.1024T>G	c.(1024-1026)TTC>GTC	p.F342V	GRAMD1B_uc001pyw.2_Missense_Mutation_p.F349V|GRAMD1B_uc010rzw.1_Missense_Mutation_p.F302V|GRAMD1B_uc010rzx.1_Missense_Mutation_p.F302V|GRAMD1B_uc009zbe.1_Missense_Mutation_p.F338V|GRAMD1B_uc001pyy.2_5'Flank	NM_020716	NP_065767	Q3KR37	GRM1B_HUMAN	GRAM domain containing 1B	342						integral to membrane				ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.32e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0394)		TTCACTGGACTTCAATGACAA	0.537000													5	12					0	0	0.014758	0	0	
OR6M1	390261	broad.mit.edu	37	11	123676403	123676403	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:123676403T>G	uc010rzz.1	-	1	655	c.655A>C	c.(655-657)ATT>CTT	p.I219L		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		ATGGTAGAAATTATGTACACG	0.488000													13	36					0	0	0.013537	0	0	
OR10G8	219869	broad.mit.edu	37	11	123900377	123900377	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:123900377C>T	uc001pzp.1	+	1	48	c.48C>T	c.(46-48)CCC>CCT	p.P16P		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		TGGGCCTTCCCCATGCCCCAG	0.577000													39	124					0	0	0.009718	0	0	
NTM	50863	broad.mit.edu	37	11	132016335	132016335	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:132016335C>T	uc001qgp.2	+	2	991	c.327C>T	c.(325-327)GAC>GAT	p.D109D	NTM_uc001qgm.2_Silent_p.D109D|NTM_uc010sch.1_Silent_p.D100D|NTM_uc010sci.1_Silent_p.D109D|NTM_uc010scj.1_Silent_p.D68D|NTM_uc001qgo.2_Silent_p.D109D|NTM_uc001qgq.2_Silent_p.D109D	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	109	Ig-like C2-type 1.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						ATGTGTATGACGAGGGCCCTT	0.577000													29	17					0	0	0.008361	0	0	
THYN1	29087	broad.mit.edu	37	11	134121176	134121176	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:134121176T>G	uc001qhf.2	-	3	172	c.70A>C	c.(70-72)AAA>CAA	p.K24Q	THYN1_uc001qhg.2_Missense_Mutation_p.K24Q|THYN1_uc001qhh.2_Missense_Mutation_p.K24Q|THYN1_uc001qhi.2_Missense_Mutation_p.K24Q|THYN1_uc001qhj.2_Missense_Mutation_p.K24Q|THYN1_uc009zdb.2_Missense_Mutation_p.K24Q|ACAD8_uc009zdc.2_5'Flank|ACAD8_uc010sco.1_5'Flank|ACAD8_uc010scp.1_5'Flank|ACAD8_uc010scq.1_5'Flank|ACAD8_uc001qhk.2_5'Flank|ACAD8_uc001qhl.2_5'Flank	NM_001037305	NP_001032382	Q9P016	THYN1_HUMAN	thymocyte nuclear protein 1 isoform 1	24						nucleus					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;1.68e-10)|all cancers(11;1.95e-09)|BRCA - Breast invasive adenocarcinoma(10;8.45e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00148)|Lung(977;0.207)		TTCTCAGTTTTGGTGCGTTTT	0.358000													67	228					0	0	0.014410	0	0	
B3GAT1	27087	broad.mit.edu	37	11	134253751	134253751	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr11:134253751C>T	uc001qhq.2	-	4	705	c.444G>A	c.(442-444)ACG>ACA	p.T148T	B3GAT1_uc001qhr.2_Silent_p.T148T|B3GAT1_uc010scv.1_Silent_p.T161T	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	148	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		AGTTGCGGGGCGTCTCCACGT	0.726000													3	7					0	0	0.009096	0	0	
SLCO1C1	53919	broad.mit.edu	37	12	20854340	20854340	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:20854340G>T	uc001rej.3	+	4	573	c.218G>T	c.(217-219)AGG>ATG	p.R73M	SLCO1C1_uc010sii.1_Missense_Mutation_p.R73M|SLCO1C1_uc010sij.1_Missense_Mutation_p.R73M|SLCO1C1_uc009zip.2_Intron|SLCO1C1_uc001rei.2_Missense_Mutation_p.R73M|SLCO1C1_uc010sik.1_Intron	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	73	Extracellular (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					ATAGAGAGAAGGTTTGATATC	0.398000													58	12					1.14385e-22	1.22581e-22	0.014410	1	0	
SLCO1B1	10599	broad.mit.edu	37	12	21370153	21370153	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:21370153A>C	uc001req.3	+	12	1702	c.1598A>C	c.(1597-1599)AAA>ACA	p.K533T		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	533	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TGTACAAGGAAATTTTACTTT	0.373000													35	5					0	0	0.021022	0	0	
ABCC9	10060	broad.mit.edu	37	12	22047092	22047092	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:22047092G>A	uc001rfi.1	-	12	1696	c.1676C>T	c.(1675-1677)GCG>GTG	p.A559V	ABCC9_uc001rfh.2_Missense_Mutation_p.A559V|ABCC9_uc001rfj.1_Missense_Mutation_p.A559V	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	559	Extracellular (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ACTGGCATACGCATGGGTCAC	0.463000													40	4					0	0	0.023175	0	0	
KRAS	3845	broad.mit.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	T	T	rs112445441		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:25398281C>T	uc001rgp.1	-	2	219	c.38G>A	c.(37-39)GGC>GAC	p.G13D	KRAS_uc001rgq.1_Missense_Mutation_p.G13D|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	13	GTP.		G -> R (in pylocytic astrocytoma; somatic mutation; increase activation of the Ras pathway).|G -> D (in a breast carcinoma cell line and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G13D(2647)|p.G13C(182)|p.G13S(58)|p.G13R(41)|p.G13V(27)|p.G13A(24)|p.G13G(11)|p.G13E(4)|p.G12_G13insG(4)|p.G13N(3)|p.G13I(1)|p.G13_V14>DI(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CTTGCCTACGCCACCAGCTCC	0.338000	G13D(NCIH647_LUNG)|G13D(MDAMB231_BREAST)|G13D(NCIH747_LARGE_INTESTINE)|G13D(T84_LARGE_INTESTINE)|G13D(LOVO_LARGE_INTESTINE)|G13D(DLD1_LARGE_INTESTINE)|G13D(DV90_LUNG)|G13D(HCT15_LARGE_INTESTINE)|G13D(HCT116_LARGE_INTESTINE)|G13D(TOLEDO_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G13D(NOMO1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			11	1					0	0	0.016723	0	0	
SFRS2IP	9169	broad.mit.edu	37	12	46355485	46355485	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:46355485C>T	uc001rox.2	-	3	504	c.217G>A	c.(217-219)GAG>AAG	p.E73K	SFRS2IP_uc001roy.1_Missense_Mutation_p.E137K|SFRS2IP_uc009zki.1_RNA|SFRS2IP_uc001roz.2_Missense_Mutation_p.E73K	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	73	RING-type; degenerate.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		AGACTTACCTCTGCCCATTTA	0.323000													40	47					0	0	0.006230	0	0	
KIAA0748	9840	broad.mit.edu	37	12	55360985	55360985	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:55360985A>T	uc001sgn.3	-	5	402	c.292T>A	c.(292-294)TTG>ATG	p.L98M	KIAA0748_uc001sgl.3_Translation_Start_Site|KIAA0748_uc001sgm.3_Translation_Start_Site|KIAA0748_uc010spb.1_Translation_Start_Site|KIAA0748_uc010spc.1_Translation_Start_Site|KIAA0748_uc010spd.1_Missense_Mutation_p.L98M|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	98										ovary(1)|central_nervous_system(1)	2						CCCAGGGTCAAGTCATCTTCA	0.468000													8	28					0	0	0.004482	0	0	
IKZF4	64375	broad.mit.edu	37	12	56415326	56415326	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:56415326G>A	uc001sjb.1	+	2	208	c.49G>A	c.(49-51)GTT>ATT	p.V17I	IKZF4_uc010sqa.1_Intron|IKZF4_uc001sjc.1_Missense_Mutation_p.V17I|IKZF4_uc001sjd.1_5'UTR|IKZF4_uc009zoi.1_Intron	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	17					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			CGGCGGCCGCGTTCGCACCCC	0.647000													8	6					0	0	0.006214	0	0	
CAPS2	84698	broad.mit.edu	37	12	75698628	75698628	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:75698628A>C	uc001sxk.3	-	9	942	c.745T>G	c.(745-747)TTA>GTA	p.L249V	CAPS2_uc001sxm.3_Missense_Mutation_p.L17V|CAPS2_uc009zsa.2_Translation_Start_Site|CAPS2_uc001sxi.3_Missense_Mutation_p.L17V|CAPS2_uc001sxj.3_Missense_Mutation_p.L192V|CAPS2_uc001sxl.3_Missense_Mutation_p.L230V	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	249							calcium ion binding			ovary(2)	2						TCAATGGCTAAATTTTGCTCT	0.313000													28	26					0	0	0.006320	0	0	
NAV3	89795	broad.mit.edu	37	12	78443823	78443823	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:78443823T>C	uc001syp.2	+	10	2247	c.2074T>C	c.(2074-2076)TTG>CTG	p.L692L	NAV3_uc001syo.2_Silent_p.L692L|NAV3_uc010sub.1_Silent_p.L192L	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	692	Potential.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CATAGCAGACTTGAGGCAGAA	0.348000										HNSCC(70;0.22)			19	34					0	0	0.014323	0	0	
MIR618	693203	broad.mit.edu	37	12	81329555	81329555	+	RNA	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:81329555T>C	hsa-mir-618|MI0003632	-			c.58T>C			LIN7A_uc001szj.1_Intron|LIN7A_uc001szk.1_Intron																	0						TCTCCTGAGCTACTGCATGTA	0.408000													13	34					0	0	0.020292	0	0	
C12orf50	160419	broad.mit.edu	37	12	88383059	88383059	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:88383059T>G	uc001tam.1	-	8	850	c.682A>C	c.(682-684)AAA>CAA	p.K228Q	C12orf50_uc001tan.2_Missense_Mutation_p.K282Q	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	228										skin(2)|ovary(1)	3						TTTGAACATTTTGATATGGTG	0.313000													13	28					0	0	0.013537	0	0	
LOC284232	284232	broad.mit.edu	37	13	19414195	19414195	+	RNA	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:19414195T>G	uc010tcj.1	-	1		c.31915A>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTGCTTCAACTTCTTTGTTAT	0.303000													20	34					0	0	0.007413	0	0	
FGF9	2254	broad.mit.edu	37	13	22245965	22245965	+	Translation_Start_Site	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:22245965G>T	uc001uog.2	+	1	751	c.-86G>T	c.(-88--84)GAGGG>GATGG			NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor						cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		CAGTAAGGGAGGGGAGTTGGA	0.423000													15	33					1.49906e-05	1.52117e-05	0.020292	1	0	
FRY	10129	broad.mit.edu	37	13	32699009	32699009	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:32699009C>A	uc001utx.2	+	7	1209	c.713C>A	c.(712-714)GCC>GAC	p.A238D	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	238					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TTGGCACAAGCCAAGTAAGTG	0.458000													44	78					2.61675e-31	2.82183e-31	0.013114	1	0	
SMAD9	4093	broad.mit.edu	37	13	37439801	37439801	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:37439801G>A	uc001uvw.2	-	5	1219	c.876C>T	c.(874-876)TCC>TCT	p.S292S	SMAD9_uc001uvx.2_Silent_p.S255S|SMAD9_uc010tep.1_Silent_p.S85S	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	292	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		CACTTCGGGAGGAAGCCTGGA	0.483000													18	48					0	0	0.004990	0	0	
POSTN	10631	broad.mit.edu	37	13	38158997	38158997	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:38158997C>T	uc001uwo.3	-	8	1082	c.964G>A	c.(964-966)GAG>AAG	p.E322K	POSTN_uc001uwp.3_Missense_Mutation_p.E322K|POSTN_uc001uwr.2_Missense_Mutation_p.E322K|POSTN_uc001uwq.2_Missense_Mutation_p.E322K|POSTN_uc010teu.1_Missense_Mutation_p.E322K|POSTN_uc010tev.1_Missense_Mutation_p.E322K|POSTN_uc010tew.1_Missense_Mutation_p.E322K|POSTN_uc010tex.1_Missense_Mutation_p.E237K	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	322	FAS1 2.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TCCAGCGTCTCAAAGACTGCT	0.373000													19	51					0	0	0.008871	0	0	
SPERT	220082	broad.mit.edu	37	13	46287490	46287490	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:46287490C>T	uc001van.1	+	3	410	c.330C>T	c.(328-330)GCC>GCT	p.A110A	SPERT_uc001vao.2_Silent_p.A74A	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	110						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		TGTCCCAGGCCGACCTGGAGC	0.647000													23	69					0	0	0.018920	0	0	
HTR2A	3356	broad.mit.edu	37	13	47409677	47409677	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:47409677G>A	uc001vbq.2	-	3	845	c.711C>T	c.(709-711)ATC>ATT	p.I237I	HTR2A_uc001vbr.2_Silent_p.I137I|HTR2A_uc010acr.2_Silent_p.I237I	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	237	Helical; Name=5; (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CAAAAGAGCCGATCAGGACAA	0.433000													37	30					0	0	0.017118	0	0	
FAM10A4	145165	broad.mit.edu	37	13	50746249	50746249	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:50746249C>T	uc001vej.2	+	1	96	c.25C>T	c.(25-27)CTT>TTT	p.L9F	DLEU1_uc010adl.1_Intron|DLEU1_uc001vee.1_Intron|DLEU1_uc010adm.1_Intron|DLEU1_uc010adn.1_Intron|DLEU1_uc001vef.1_Intron|DLEU1_uc001veg.1_Intron|DLEU1_uc010tgn.1_Intron|DLEU1_uc001vei.1_Intron|DLEU1_uc010ado.1_Intron|DLEU1_uc010adp.1_Intron	NR_002183				SubName: Full=ST13 protein;												0						AGTGAACGAGCTTCGGGCCTT	0.627000													11	29					0	0	0.010729	0	0	
THSD1	55901	broad.mit.edu	37	13	52952250	52952250	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr13:52952250T>G	uc001vgo.2	-	5	2400	c.1855A>C	c.(1855-1857)AGC>CGC	p.S619R	THSD1_uc001vgp.2_Missense_Mutation_p.S566R|THSD1_uc010tgz.1_Missense_Mutation_p.S240R|THSD1_uc010aea.2_Missense_Mutation_p.S80R	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	619	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		TGGCTGGGGCTTATGGCACAA	0.622000													18	65					0	0	0.006122	0	0	
OR4N2	390429	broad.mit.edu	37	14	20295670	20295670	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:20295670A>T	uc010tkv.1	+	1	63	c.63A>T	c.(61-63)CAA>CAT	p.Q21H		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CCCAGTCTCAAGATATTCAGC	0.408000													44	524					0	0	0.007835	0	0	
RNF31	55072	broad.mit.edu	37	14	24617255	24617255	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:24617255G>A	uc001wmn.1	+	2	512	c.263G>A	c.(262-264)AGC>AAC	p.S88N	PSME2_uc001wmj.2_5'Flank|PSME2_uc001wmk.2_5'Flank|RNF31_uc001wml.1_5'UTR|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_5'UTR|RNF31_uc001wmo.1_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	88	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		AACCTTCTCAGCCCTCAGCGG	0.577000													40	6					0	0	0.006230	0	0	
PRKD1	5587	broad.mit.edu	37	14	30046521	30046521	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:30046521T>G	uc001wqh.2	-	18	2843	c.2662A>C	c.(2662-2664)AGT>CGT	p.S888R		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	888					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		TGGCTAGCACTTGGATTGATC	0.522000													50	14					0	0	0.014410	0	0	
AKAP6	9472	broad.mit.edu	37	14	33291387	33291387	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:33291387A>C	uc001wrq.2	+	13	4538	c.4368A>C	c.(4366-4368)GAA>GAC	p.E1456D		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1456					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GTTTGGGAGAAGAATTACAAG	0.368000													5	26					0	0	0.014758	0	0	
LRFN5	145581	broad.mit.edu	37	14	42360793	42360793	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:42360793G>T	uc001wvm.2	+	4	2924	c.1726G>T	c.(1726-1728)GCT>TCT	p.A576S	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	576	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AACTAACGGGGCTCAAATACA	0.453000										HNSCC(30;0.082)			24	91					3.28513e-13	3.44538e-13	0.021523	1	0	
PTGDR	5729	broad.mit.edu	37	14	52741454	52741454	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:52741454C>T	uc001wzq.2	+	2	954	c.852C>T	c.(850-852)CGC>CGT	p.R284R		NM_000953	NP_000944	Q13258	PD2R_HUMAN	prostaglandin D2 receptor	284	Extracellular (Potential).					integral to membrane|plasma membrane	prostaglandin D receptor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Breast(41;0.0639)|all_epithelial(31;0.0887)				Nedocromil(DB00716)	AACAGTATCGCGCTTACTATG	0.398000													12	19					0	0	0.013537	0	0	
TTLL5	23093	broad.mit.edu	37	14	76238105	76238105	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:76238105G>A	uc001xrx.2	+	21	2249	c.2044G>A	c.(2044-2046)GCC>ACC	p.A682T	TTLL5_uc010ask.1_Missense_Mutation_p.A696T|TTLL5_uc001xrz.2_Missense_Mutation_p.A257T|TTLL5_uc001xry.1_RNA	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	682					protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		AGCATTCTCTGCCTATCTCCA	0.443000													33	50					0	0	0.013726	0	0	
C14orf118	55668	broad.mit.edu	37	14	76621146	76621146	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:76621146T>C	uc001xsh.2	+	2	526	c.440T>C	c.(439-441)CTG>CCG	p.L147P	C14orf118_uc001xsi.2_Missense_Mutation_p.L147P|C14orf118_uc001xsj.1_Missense_Mutation_p.L147P|C14orf118_uc001xsk.1_Missense_Mutation_p.L147P|C14orf118_uc001xsl.2_RNA	NM_017926	NP_060396	Q9NWQ4	CN118_HUMAN	hypothetical protein LOC55668 isoform 1	147										ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.0172)		CAGCAGAAGCTGAAGGTGTCA	0.537000													22	29					0	0	0.012319	0	0	
C14orf177	283598	broad.mit.edu	37	14	99182660	99182660	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:99182660T>C	uc001yfz.1	+	3	551	c.132T>C	c.(130-132)TCT>TCC	p.S44S		NM_182560	NP_872366	Q52M58	CN177_HUMAN	hypothetical protein LOC283598	44											0		Melanoma(154;0.128)				GCCCAAGTTCTCAGCACCTGC	0.527000													12	12					0	0	0.013537	0	0	
ADAM6	8755	broad.mit.edu	37	14	106790894	106790894	+	Splice_Site	SNP	A	G	G	rs142575277	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:106790894A>G	uc010tyt.1	-	387		c.14722_splice	c.e387+1							Parts of antibodies, mostly variable regions.												0						ACCTGCCTCCAGGGCTGACTC	0.567000													6	66					0	0	0.008291	0	0	
ADAM6	8755	broad.mit.edu	37	14	107170060	107170060	+	RNA	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr14:107170060A>C	uc010tyt.1	-	39		c.2727T>G								Parts of antibodies, mostly variable regions.												0						TTGCTGTACCAAAGATAGGGA	0.562000													10	47					0	0	0.014410	0	0	
OR4N4	283694	broad.mit.edu	37	15	22383400	22383400	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:22383400G>A	uc001yuc.1	+	7	1909	c.928G>A	c.(928-930)GTG>ATG	p.V310M	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.V310M	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		AGTCTGTCAAGTGGATTTTAT	0.284000													10	16					0	0	0.006214	0	0	
ZNF770	54989	broad.mit.edu	37	15	35275157	35275157	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:35275157T>A	uc001ziw.2	-	3	790	c.479A>T	c.(478-480)CAT>CTT	p.H160L		NM_014106	NP_054825	Q6IQ21	ZN770_HUMAN	zinc finger protein 770	160	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(122;4.59e-10)|all_lung(180;8.78e-09)		all cancers(64;1.97e-18)|GBM - Glioblastoma multiforme(113;2.11e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0643)		TGTACATGCATGAATATTCTT	0.383000													24	32					0	0	0.016522	0	0	
EHD4	30844	broad.mit.edu	37	15	42211597	42211597	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:42211597C>A	uc001zot.2	-	4	798	c.735G>T	c.(733-735)AAG>AAT	p.K245N		NM_139265	NP_644670	Q9H223	EHD4_HUMAN	EH-domain containing 4	245					endocytic recycling|protein homooligomerization	early endosome membrane|endoplasmic reticulum|nucleus|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			ovary(2)	2		all_cancers(109;2.54e-12)|all_epithelial(112;6.59e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		OV - Ovarian serous cystadenocarcinoma(18;1.6e-19)|GBM - Glioblastoma multiforme(94;3.77e-06)|COAD - Colon adenocarcinoma(120;0.0474)|Colorectal(105;0.0538)		TGTTGATGACCTTGCCTAGGG	0.637000													13	27					3.27435e-08	3.38251e-08	0.020292	1	0	
SEMA6D	80031	broad.mit.edu	37	15	48055225	48055225	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:48055225T>G	uc010bek.2	+	9	1031	c.671T>G	c.(670-672)CTT>CGT	p.L224R	SEMA6D_uc001zvw.2_Missense_Mutation_p.L224R|SEMA6D_uc001zvx.1_Missense_Mutation_p.L224R|SEMA6D_uc001zvy.2_Missense_Mutation_p.L224R|SEMA6D_uc001zvz.2_Missense_Mutation_p.L224R|SEMA6D_uc001zwa.2_Missense_Mutation_p.L224R|SEMA6D_uc001zwb.2_Missense_Mutation_p.L224R|SEMA6D_uc001zwc.2_Missense_Mutation_p.L224R	NM_153618	NP_705871	Q8NFY4	SEM6D_HUMAN	semaphorin 6D isoform 4 precursor	224	Sema.|Extracellular (Potential).				axon guidance	cytoplasm|integral to membrane|plasma membrane	receptor activity			skin(3)|breast(1)	4		all_lung(180;0.000635)|Myeloproliferative disorder(241;0.116)|Melanoma(134;0.18)		all cancers(107;1.2e-11)|GBM - Glioblastoma multiforme(94;1.2e-06)		CCACACTTTCTTCATGCCATA	0.358000													10	14					0	0	0.008291	0	0	
SLC12A1	6557	broad.mit.edu	37	15	48594956	48594956	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:48594956C>T	uc001zwn.3	+	27	3390	c.3174C>T	c.(3172-3174)CCC>CCT	p.P1058P	SLC12A1_uc001zwq.3_Silent_p.P829P|SLC12A1_uc001zwr.3_Silent_p.P785P	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	1058	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	GGAGCCTTCCCGTGGCAAGAA	0.383000													22	26					0	0	0.021523	0	0	
GLDN	342035	broad.mit.edu	37	15	51687172	51687172	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:51687172C>T	uc002aba.2	+	5	851	c.682C>T	c.(682-684)CTG>TTG	p.L228L	GLDN_uc002abb.2_Silent_p.L104L	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	228	Extracellular (Potential).				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		CGACGTGCTCCTGGCAGGTAA	0.587000													8	4					0	0	0.003080	0	0	
ZNF280D	54816	broad.mit.edu	37	15	56924164	56924164	+	Silent	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:56924164G>T	uc002adu.2	-	22	2689	c.2472C>A	c.(2470-2472)ATC>ATA	p.I824I	uc002ads.2_5'Flank|ZNF280D_uc002adv.2_Silent_p.I811I|ZNF280D_uc010bfq.2_Silent_p.I824I|ZNF280D_uc002adt.2_Silent_p.I65I|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	824					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		CACAACTGACGATGTTTTTTG	0.368000													45	68					4.64027e-19	4.94195e-19	0.014410	1	0	
RORA	6095	broad.mit.edu	37	15	60919479	60919479	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:60919479C>A	uc002agv.2	-	1	251	c.95G>T	c.(94-96)AGA>ATA	p.R32I	RORA_uc002agw.2_Missense_Mutation_p.R32I|RORA_uc002agx.2_Intron	NM_134260	NP_599022	P35398	RORA_HUMAN	RAR-related orphan receptor A isoform b	32	Modulating.				positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GGCAGACATTCTGGCCTGTCC	0.373000													19	34					1.2644e-06	1.29067e-06	0.010504	1	0	
ADAMTSL3	57188	broad.mit.edu	37	15	84659886	84659886	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:84659886A>C	uc002bjz.3	+	23	4117	c.3893A>C	c.(3892-3894)CAC>CCC	p.H1298P	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.H1298P|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.H1298P	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1298	Ig-like C2-type 3.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			AAACCAGAGCACAACCATCTG	0.458000													66	90					0	0	0.014410	0	0	
MESP2	145873	broad.mit.edu	37	15	90321444	90321444	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr15:90321444C>A	uc002bon.2	+	2	1073	c.1073C>A	c.(1072-1074)CCG>CAG	p.P358Q	MESP2_uc010uqa.1_Missense_Mutation_p.P60Q	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	358					Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			GACCAGGGACCGGGCGCCGCC	0.657000													10	9					0.00829132	0.00836426	0.008291	1	0	
RAB11FIP3	9727	broad.mit.edu	37	16	511421	511421	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr16:511421G>C	uc002chf.2	+	2	1071	c.732G>C	c.(730-732)AAG>AAC	p.K244N		NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	244	EF-hand 2.				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				ACTTAACTAAGTACTTGGATC	0.398000													4	50					0	0	0.014758	0	0	
RRN3P3	100131998	broad.mit.edu	37	16	22441236	22441236	+	RNA	SNP	G	A	A	rs114681793	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr16:22441236G>A	uc002dkp.2	-	5		c.1170C>T			RRN3P3_uc010vbu.1_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						TGTTCCTCTCGATGATGGTGT	0.507000													9	20					0	0	0.004482	0	0	
HS3ST2	9956	broad.mit.edu	37	16	22926778	22926778	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr16:22926778T>C	uc002dli.2	+	2	1071	c.999T>C	c.(997-999)ACT>ACC	p.T333T	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	333	PAPS and substrate (By similarity).|Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		AAGGGAGAACTCATGTACAGA	0.423000													55	115					0	0	0.014410	0	0	
PRKCB	5579	broad.mit.edu	37	16	24104114	24104114	+	Silent	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr16:24104114A>C	uc002dmd.2	+	6	729	c.532A>C	c.(532-534)AGA>CGA	p.R178R	PRKCB_uc002dme.2_Silent_p.R178R	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	178	C2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	TTTTTCAGTAAGAGATGCTAA	0.418000													53	43					0	0	0.014410	0	0	
TMEM231	79583	broad.mit.edu	37	16	75575315	75575315	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr16:75575315C>T	uc002fem.2	-	6	766	c.703G>A	c.(703-705)GTG>ATG	p.V235M	CHST5_uc002fej.1_Intron|TMEM231_uc002fek.2_Missense_Mutation_p.V264M|TMEM231_uc002fel.2_Missense_Mutation_p.V119M|TMEM231_uc010vne.1_Missense_Mutation_p.V88M|TMEM231_uc010cgx.1_Missense_Mutation_p.V199M	NM_001077418	NP_001070886	Q9H6L2	TM231_HUMAN	transmembrane protein 231 isoform 2	235						integral to membrane					0						GCCCTGCCCACCAGCCAGATG	0.453000													15	15					0	0	0.004990	0	0	
ADAMTS18	170692	broad.mit.edu	37	16	77334269	77334269	+	Silent	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr16:77334269A>T	uc002ffc.3	-	17	2984	c.2565T>A	c.(2563-2565)GCT>GCA	p.A855A	ADAMTS18_uc010chc.1_Silent_p.A443A|ADAMTS18_uc002ffe.1_Silent_p.A551A	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	855	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CATACTTCCAAGCTATCCCTG	0.458000													20	55					0	0	0.007413	0	0	
OR1E1	8387	broad.mit.edu	37	17	3301149	3301149	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:3301149T>G	uc002fvj.1	-	1	556	c.556A>C	c.(556-558)AAG>CAG	p.K186Q		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGCCAGCTTCAGCAGAGCA	0.463000													24	22					0	0	0.016522	0	0	
TRPV1	7442	broad.mit.edu	37	17	3495503	3495503	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:3495503G>A	uc010vrr.1	-	1	669	c.142C>T	c.(142-144)CGG>TGG	p.R48W	TRPV1_uc010vro.1_Missense_Mutation_p.R48W|TRPV1_uc010vrp.1_Missense_Mutation_p.R48W|TRPV1_uc010vrq.1_Silent_p.P22P|TRPV1_uc010vrs.1_Missense_Mutation_p.R48W|TRPV1_uc010vrt.1_Missense_Mutation_p.R48W|TRPV1_uc010vru.1_Missense_Mutation_p.R48W	NM_080706	NP_542437	Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel,	48	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			ovary(1)	1				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	CCAAAGAGCCGGGTGCGGCTC	0.642000													5	2					0	0	0.001984	0	0	
C17orf74	201243	broad.mit.edu	37	17	7330106	7330106	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:7330106C>T	uc002ggw.2	+	3	869	c.796C>T	c.(796-798)CGA>TGA	p.R266*	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	266						integral to membrane					0		Prostate(122;0.157)				TTCCCAATCCCGACTGTGGGG	0.662000													9	21					0	0	0.004482	0	0	
TP53	7157	broad.mit.edu	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	A	A	rs121913344		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:7577022G>A	uc002gim.2	-	8	1110	c.916C>T	c.(916-918)CGA>TGA	p.R306*	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Nonsense_Mutation_p.R306*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R174*|TP53_uc010cng.1_Nonsense_Mutation_p.R174*|TP53_uc002gii.1_Nonsense_Mutation_p.R174*|TP53_uc010cnh.1_Nonsense_Mutation_p.R306*|TP53_uc010cni.1_Nonsense_Mutation_p.R306*|TP53_uc002gij.2_Nonsense_Mutation_p.R306*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	306	Bipartite nuclear localization signal.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.		R -> Q (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in a sporadic cancer; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R306*(99)|p.0?(7)|p.?(3)|p.R306R(2)|p.R306fs*39(2)|p.K305fs*1(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TGCTTACCTCGCTTAGTGCTC	0.562000	R306*(MFE296_ENDOMETRIUM)|R306*(HCC1937_BREAST)|R306*(MOLT4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R306*(RCM1_LARGE_INTESTINE)|R306*(JURLMK1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			37	7					0	0	0.006999	0	0	
RCVRN	5957	broad.mit.edu	37	17	9808171	9808171	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:9808171G>A	uc002gme.1	-	1	514	c.327C>T	c.(325-327)TAC>TAT	p.Y109Y		NM_002903	NP_002894	P35243	RECO_HUMAN	recoverin	109	EF-hand 3.				visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						CGTCCACGTCGTAGAGGGAGA	0.617000													24	47					0	0	0.005443	0	0	
MYH4	4622	broad.mit.edu	37	17	10346803	10346803	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:10346803G>A	uc002gmn.2	-	40	5820	c.5709C>T	c.(5707-5709)CTC>CTT	p.L1903L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1903	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCTCGTGCTGGAGCTTGCGGA	0.468000													33	48					0	0	0.013726	0	0	
ZNF286A	57335	broad.mit.edu	37	17	15619704	15619704	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:15619704A>T	uc010cot.2	+	6	1062	c.666A>T	c.(664-666)AAA>AAT	p.K222N	ZNF286A_uc002goz.3_Missense_Mutation_p.K110N|ZNF286A_uc010vwa.1_Missense_Mutation_p.K222N|ZNF286A_uc002gpa.2_Missense_Mutation_p.K222N	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	222					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		CACTTGAAAAAAGCTTGAAAC	0.333000													11	19					0	0	0.013537	0	0	
PIGL	9487	broad.mit.edu	37	17	16221220	16221220	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:16221220A>C	uc002gpv.2	+	6	690	c.658A>C	c.(658-660)AAG>CAG	p.K220Q		NM_004278	NP_004269	Q9Y2B2	PIGL_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	220	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	N-acetylglucosaminylphosphatidylinositol deacetylase activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0934)		GGCACAGGCCAAGGTGAGGAT	0.542000													36	6					0	0	0.015359	0	0	
CYTSB	92521	broad.mit.edu	37	17	19999988	19999988	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:19999988G>A	uc002gwq.2	+	2	169	c.24G>A	c.(22-24)TGG>TGA	p.W8*	CYTSB_uc010cqx.2_Nonsense_Mutation_p.W8*|CYTSB_uc002gwr.2_Nonsense_Mutation_p.W8*|CYTSB_uc002gws.2_Nonsense_Mutation_p.W8*	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	8						nucleus					0						CCAAGCCCTGGAACCCAGCCA	0.567000													32	46					0	0	0.009535	0	0	
KCNJ12	3768	broad.mit.edu	37	17	21319358	21319358	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:21319358C>T	uc002gyv.1	+	3	1409	c.704C>T	c.(703-705)CCG>CTG	p.P235L		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	235	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CTCATCAAGCCGCGGGTCACC	0.637000										Prostate(3;0.18)			3	20					0	0	0.004672	0	0	
FAM27L	284123	broad.mit.edu	37	17	21826233	21826233	+	RNA	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:21826233G>A	uc002gyz.2	+	2		c.343G>A				NR_028336				Homo sapiens family with sequence similarity 27-like, mRNA (cDNA clone MGC:35151 IMAGE:5169482), complete cds.												0				UCEC - Uterine corpus endometrioid carcinoma (53;0.11)|BRCA - Breast invasive adenocarcinoma(1;0.00463)		GCCACACCACGATACAGTCTT	0.542000													16	20					0	0	0.004990	0	0	
VTN	7448	broad.mit.edu	37	17	26695926	26695926	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:26695926A>G	uc002hbc.2	-	5	942	c.793T>C	c.(793-795)TAC>CAC	p.Y265H	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	265	Hemopexin-like 3.				cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	CGGCCACTGTAGCTATGGGCA	0.577000													34	59					0	0	0.010818	0	0	
TMEM132E	124842	broad.mit.edu	37	17	32953468	32953468	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:32953468C>T	uc002hif.2	+	2	718	c.390C>T	c.(388-390)ATC>ATT	p.I130I		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	130	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GGGCCTTCATCGTCCGCTCGC	0.701000													8	16					0	0	0.003080	0	0	
AP2B1	163	broad.mit.edu	37	17	33951554	33951554	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:33951554A>T	uc002hjr.2	+	6	853	c.664A>T	c.(664-666)ATC>TTC	p.I222F	AP2B1_uc002hjq.2_Missense_Mutation_p.I222F|AP2B1_uc010wci.1_Missense_Mutation_p.I184F|AP2B1_uc002hjs.2_Missense_Mutation_p.I165F|AP2B1_uc002hjt.2_Missense_Mutation_p.I222F|AP2B1_uc010ctv.2_Missense_Mutation_p.I222F|AP2B1_uc010wcj.1_5'UTR	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	222					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		CCAGATTTTCATCCTGGACTG	0.468000													31	54					0	0	0.010818	0	0	
KCNH4	23415	broad.mit.edu	37	17	40315668	40315668	+	Silent	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:40315668G>C	uc002hzb.2	-	13	2766	c.2433C>G	c.(2431-2433)CTC>CTG	p.L811L		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	811	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GTGGGGGAATGAGAAGCTGAG	0.652000													7	9					0	0	0.001984	0	0	
UBE2Z	65264	broad.mit.edu	37	17	46998578	46998578	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:46998578C>G	uc002ioi.2	+	5	846	c.747C>G	c.(745-747)ATC>ATG	p.I249M		NM_023079	NP_075567	Q9H832	UBE2Z_HUMAN	ubiquitin-conjugating enzyme E2Z	249					apoptosis	cytoplasm|nucleus	ATP binding|ubiquitin-protein ligase activity				0						ACGAGACCATCAGAGTTGCAG	0.448000													4	16					0	0	0.014758	0	0	
CACNA1G	8913	broad.mit.edu	37	17	48646631	48646631	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:48646631C>T	uc002irk.1	+	3	832	c.460C>T	c.(460-462)CGG>TGG	p.R154W	CACNA1G_uc002iri.1_Missense_Mutation_p.R154W|CACNA1G_uc002irj.1_Missense_Mutation_p.R154W|CACNA1G_uc002irl.1_Missense_Mutation_p.R154W|CACNA1G_uc002irm.1_Missense_Mutation_p.R154W|CACNA1G_uc002irn.1_Missense_Mutation_p.R154W|CACNA1G_uc002iro.1_Missense_Mutation_p.R154W|CACNA1G_uc002irp.1_Missense_Mutation_p.R154W|CACNA1G_uc002irq.1_Missense_Mutation_p.R154W|CACNA1G_uc002irr.1_Missense_Mutation_p.R154W|CACNA1G_uc002irs.1_Missense_Mutation_p.R154W|CACNA1G_uc002irt.1_Missense_Mutation_p.R154W|CACNA1G_uc002irv.1_Missense_Mutation_p.R154W|CACNA1G_uc002irw.1_Missense_Mutation_p.R154W|CACNA1G_uc002iru.1_Missense_Mutation_p.R154W|CACNA1G_uc002irx.1_Missense_Mutation_p.R67W|CACNA1G_uc002iry.1_Missense_Mutation_p.R67W|CACNA1G_uc002irz.1_Missense_Mutation_p.R67W|CACNA1G_uc002isa.1_Missense_Mutation_p.R67W|CACNA1G_uc002isb.1_Missense_Mutation_p.R67W|CACNA1G_uc002isc.1_Missense_Mutation_p.R67W|CACNA1G_uc002isd.1_Missense_Mutation_p.R67W|CACNA1G_uc002ise.1_Missense_Mutation_p.R67W|CACNA1G_uc002isf.1_Missense_Mutation_p.R67W|CACNA1G_uc002isg.1_Missense_Mutation_p.R67W|CACNA1G_uc002ish.1_Missense_Mutation_p.R67W|CACNA1G_uc002isi.1_Missense_Mutation_p.R67W	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	154	I.|Helical; Name=S3 of repeat I; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	CACTTGGAACCGGCTTGACTT	0.562000													16	55					0	0	0.004007	0	0	
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458000													8	49					2.94152e-06	2.99374e-06	0.021022	1	0	
TLK2	11011	broad.mit.edu	37	17	60637416	60637416	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:60637416A>C	uc010ddp.2	+	10	1028	c.760A>C	c.(760-762)AAG>CAG	p.K254Q	TLK2_uc002izx.3_Missense_Mutation_p.K102Q|TLK2_uc002izz.3_Missense_Mutation_p.K254Q|TLK2_uc002jaa.3_Missense_Mutation_p.K222Q|TLK2_uc010wpd.1_Missense_Mutation_p.K222Q	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	254	Potential.				cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						TGAACAGCAAAAGATGCTAGA	0.343000													15	40					0	0	0.008871	0	0	
EVPL	2125	broad.mit.edu	37	17	74006521	74006521	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:74006521T>A	uc002jqi.2	-	22	2993	c.2765A>T	c.(2764-2766)GAA>GTA	p.E922V	EVPL_uc010wss.1_Missense_Mutation_p.E944V|EVPL_uc010wst.1_Missense_Mutation_p.E392V	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	922	Central fibrous rod domain.|Potential.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						CCTCTCCTCTTCCAGCTGGGC	0.652000													8	19					0	0	0.004482	0	0	
ENPP7	339221	broad.mit.edu	37	17	77708875	77708875	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:77708875G>A	uc002jxa.2	+	3	453	c.433G>A	c.(433-435)GGG>AGG	p.G145R		NM_178543	NP_848638	Q6UWV6	ENPP7_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	145					negative regulation of cell proliferation|negative regulation of DNA replication|sphingomyelin metabolic process	Golgi apparatus|integral to membrane|microvillus	sphingomyelin phosphodiesterase activity			central_nervous_system(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(97;0.016)|BRCA - Breast invasive adenocarcinoma(99;0.0224)			CTACCCGGGCGGGAACGTCAC	0.592000													12	14					0	0	0.016723	0	0	
LAMA1	284217	broad.mit.edu	37	18	6943298	6943298	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:6943298T>G	uc002knm.2	-	62	9042	c.8948A>C	c.(8947-8949)AAC>ACC	p.N2983T	LAMA1_uc002knk.2_Missense_Mutation_p.N313T|LAMA1_uc002knl.2_Missense_Mutation_p.N436T|LAMA1_uc010wzj.1_Missense_Mutation_p.N2459T	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2983	Laminin G-like 5.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTTGCTTTTGTTAGCTTGAAG	0.488000													64	48					0	0	0.014410	0	0	
LAMA1	284217	broad.mit.edu	37	18	7034595	7034595	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:7034595A>T	uc002knm.2	-	14	2028	c.1934T>A	c.(1933-1935)TTC>TAC	p.F645Y	LAMA1_uc010wzj.1_Missense_Mutation_p.F121Y	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	645	Laminin IV type A 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AAAATCTTGGAAGTTTTCAGG	0.448000													53	38					0	0	0.014410	0	0	
CXADRP3	440224	broad.mit.edu	37	18	14478666	14478666	+	RNA	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:14478666T>G	uc010xai.1	-	3		c.898A>C				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						GAAGCATTTTTTTACAGATAT	0.423000													15	32					0	0	0.020292	0	0	
LAMA3	3909	broad.mit.edu	37	18	21357584	21357584	+	Splice_Site	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:21357584G>T	uc002kuq.2	+	11	1554	c.1468_splice	c.e11+1	p.G490_splice	LAMA3_uc010dlv.1_Splice_Site_p.G490_splice|LAMA3_uc002kur.2_Splice_Site_p.G490_splice	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1						cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATATAAAAGGCAAGTAACCT	0.388000													9	58					9.70103e-10	1.0082e-09	0.008291	1	0	
RIT2	6014	broad.mit.edu	37	18	40323528	40323528	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:40323528A>C	uc002lav.2	-	5	757	c.584T>G	c.(583-585)CTG>CGG	p.L195R	RIT2_uc010dnf.2_3'UTR	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	195					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TTTTCTCTTCAGTTTCTTTTC	0.423000													24	82					0	0	0.018920	0	0	
PIAS2	9063	broad.mit.edu	37	18	44470842	44470842	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:44470842C>T	uc002lck.2	-	2	358	c.200G>A	c.(199-201)CGA>CAA	p.R67Q	PIAS2_uc010dnp.2_5'UTR|PIAS2_uc002lcl.2_Missense_Mutation_p.R67Q|PIAS2_uc010xda.1_Intron|PIAS2_uc002lcm.2_Missense_Mutation_p.R67Q|PIAS2_uc002lcn.1_Missense_Mutation_p.R71Q	NM_004671	NP_004662	O75928	PIAS2_HUMAN	protein inhibitor of activated STAT X isoform	67					androgen receptor signaling pathway|negative regulation of androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck|PML body	androgen receptor binding|DNA binding|protein binding|SUMO ligase activity|transcription coactivator activity|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						TTCAAGAGTTCGTGGATATCG	0.478000													32	72					0	0	0.013726	0	0	
LASS4	79603	broad.mit.edu	37	19	8326872	8326872	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:8326872C>T	uc002mjg.2	+	12	1384	c.1064C>T	c.(1063-1065)GCG>GTG	p.A355V	LASS4_uc002mjh.2_Missense_Mutation_p.A304V|LASS4_uc002mji.2_Missense_Mutation_p.A191V|LASS4_uc010dvz.2_Missense_Mutation_p.A267V	NM_024552	NP_078828	Q9HA82	CERS4_HUMAN	LAG1 homolog, ceramide synthase 4	355						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(1)	1						GAGGCGGCGGCGGCCCAGGAA	0.632000													10	11					0	0	0.008291	0	0	
COL5A3	50509	broad.mit.edu	37	19	10071440	10071440	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:10071440C>A	uc002mmq.1	-	66	5064	c.4978G>T	c.(4978-4980)GAA>TAA	p.E1660*		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1660	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCCGTGGCTTCGTCCAGCCAG	0.592000													26	40					2.41591e-17	2.55715e-17	0.004656	1	0	
ELAVL3	1995	broad.mit.edu	37	19	11577597	11577597	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:11577597C>T	uc002mry.1	-	2	435	c.55G>A	c.(55-57)GGC>AGC	p.G19S	ELAVL3_uc002mrx.1_Missense_Mutation_p.G19S	NM_001420	NP_001411	Q14576	ELAV3_HUMAN	ELAV-like protein 3 isoform 1	19					cell differentiation|nervous system development		AU-rich element binding|nucleotide binding			ovary(1)|breast(1)|skin(1)	3						Agggccgggccggccgggccc	0.522000													5	13					0	0	0.014758	0	0	
CILP2	148113	broad.mit.edu	37	19	19655402	19655402	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:19655402C>T	uc002nmv.3	+	8	2133	c.2048C>T	c.(2047-2049)TCG>TTG	p.S683L	CILP2_uc002nmw.3_Missense_Mutation_p.S689L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	683						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						AAGCTGTGGTCGCTGAACCCC	0.746000													5	9					0	0	0.021553	0	0	
ZNF626	199777	broad.mit.edu	37	19	20808024	20808024	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:20808024T>G	uc002npb.1	-	4	809	c.659A>C	c.(658-660)AAG>ACG	p.K220T	ZNF626_uc002npc.1_Missense_Mutation_p.K144T	NM_001076675	NP_001070143	Q68DY1	ZN626_HUMAN	zinc finger protein 626 isoform 1	220	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATGAATTTTCTTATGTCTAGT	0.383000													18	29					0	0	0.004990	0	0	
ZNF85	7639	broad.mit.edu	37	19	21117821	21117821	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:21117821A>C	uc002npg.3	+	3	324	c.197A>C	c.(196-198)AAG>ACG	p.K66T	ZNF85_uc002npf.2_RNA|ZNF85_uc002nph.1_RNA|ZNF85_uc010ecn.2_Intron|ZNF85_uc010eco.2_5'Flank|ZNF85_uc002npi.2_5'Flank	NM_003429	NP_003420	Q03923	ZNF85_HUMAN	zinc finger protein 85	66	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			central_nervous_system(1)	1						TGGAGTATGAAGAGACATGAG	0.413000													8	15					0	0	0.006214	0	0	
ZNF99	7652	broad.mit.edu	37	19	22941160	22941160	+	Silent	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:22941160A>G	uc010xrh.1	-	5	1278	c.1278T>C	c.(1276-1278)GCT>GCC	p.A426A		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AATGCTTAAAAGCTTTGCCAC	0.343000													14	23					0	0	0.004007	0	0	
LRFN3	79414	broad.mit.edu	37	19	36430970	36430970	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:36430970C>T	uc002oco.2	+	2	1095	c.643C>T	c.(643-645)CGC>TGC	p.R215C		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	215	Extracellular (Potential).|LRR 7.				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GACCTCCAACCGCCTGACCAC	0.697000													46	353					0	0	0.014410	0	0	
WDR62	284403	broad.mit.edu	37	19	36583682	36583682	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:36583682A>G	uc002odc.2	+	19	2393	c.2302A>G	c.(2302-2304)ACA>GCA	p.T768A	WDR62_uc002odd.2_Missense_Mutation_p.T768A	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	768					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GCAGCAGCACACAAATGACAA	0.537000													26	180					0	0	0.006320	0	0	
ZNF529	57711	broad.mit.edu	37	19	37037814	37037814	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:37037814A>G	uc002oeh.3	-	5	1848	c.1646T>C	c.(1645-1647)CTT>CCT	p.L549P	ZNF529_uc010xth.1_Missense_Mutation_p.L549P|ZNF529_uc010xti.1_Missense_Mutation_p.L531P|ZNF529_uc002oeg.3_Missense_Mutation_p.L444P	NM_020951	NP_066002	Q6P280	ZN529_HUMAN	zinc finger protein 529 isoform a	516	C2H2-type 12; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	Esophageal squamous(110;0.198)					TTGGCAAGTAAGATGCCCAAC	0.353000													22	139					0	0	0.016522	0	0	
ZNF382	84911	broad.mit.edu	37	19	37117657	37117657	+	Silent	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:37117657T>G	uc002oek.2	+	5	971	c.858T>G	c.(856-858)CCT>CCG	p.P286P	ZNF382_uc010efa.2_Silent_p.P237P|ZNF382_uc010efb.2_Silent_p.P285P|ZNF382_uc002oel.2_Silent_p.P285P	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			TTATTATGCCTCAGAGACCTC	0.418000													40	296					0	0	0.007835	0	0	
RYR1	6261	broad.mit.edu	37	19	38966081	38966081	+	Silent	SNP	C	T	T	rs139622869		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:38966081C>T	uc002oit.2	+	29	4414	c.4284C>T	c.(4282-4284)AAC>AAT	p.N1428N	RYR1_uc002oiu.2_Silent_p.N1428N	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1428	Cytoplasmic.|B30.2/SPRY 3.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TCATCCTCAACACCACCACGG	0.597000													5	64					0	0	0.014758	0	0	
PAF1	54623	broad.mit.edu	37	19	39876874	39876874	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:39876874C>T	uc002old.2	-	14	1528	c.1353G>A	c.(1351-1353)GAG>GAA	p.E451E	PAF1_uc002ole.1_Intron	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	451	Glu-rich.				histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			CAAAGATCTCCTCTTTGTCAC	0.582000													52	238					0	0	0.014410	0	0	
TIMM50	92609	broad.mit.edu	37	19	39980387	39980387	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:39980387C>T	uc002olu.1	+	11	1431	c.1298C>T	c.(1297-1299)TCC>TTC	p.S433F	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_Missense_Mutation_p.S132F	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	330	Mitochondrial intermembrane (Potential).				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCCGAGCTCTCCAAGTCCAAC	0.632000													14	21					0	0	0.020292	0	0	
FCGBP	8857	broad.mit.edu	37	19	40392045	40392045	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:40392045C>T	uc002omp.3	-	17	8349	c.8341G>A	c.(8341-8343)GTG>ATG	p.V2781M		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2781	Cys-rich.|TIL 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGGATGGGCACGCAGGCTTGG	0.607000													12	95					0	0	0.020292	0	0	
FCGBP	8857	broad.mit.edu	37	19	40433051	40433051	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:40433051C>T	uc002omp.3	-	2	1226	c.1218G>A	c.(1216-1218)ACG>ACA	p.T406T		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	406	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TGGCCTCGGCCGTGTGGATCA	0.592000													10	76					0	0	0.006214	0	0	
GRIK5	2901	broad.mit.edu	37	19	42509893	42509893	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:42509893C>T	uc002osj.1	-	16	2280	c.2245G>A	c.(2245-2247)GGC>AGC	p.G749S	GRIK5_uc002osi.1_Missense_Mutation_p.G321S	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	749	Extracellular (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	ATGCCAATGCCGTAGCCCTTG	0.647000													4	14					0	0	0.009096	0	0	
BCAM	4059	broad.mit.edu	37	19	45321843	45321843	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:45321843C>T	uc002ozu.2	+	9	1187	c.1143C>T	c.(1141-1143)GTC>GTT	p.V381V	BCAM_uc002ozt.1_Silent_p.V381V	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	381	Extracellular (Potential).|Ig-like C2-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GCAGTGCAGTCGTGAACTGCT	0.647000													15	22					0	0	0.020292	0	0	
ZNF577	84765	broad.mit.edu	37	19	52376330	52376330	+	Silent	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:52376330T>G	uc010yde.1	-	7	1304	c.913A>C	c.(913-915)AGA>CGA	p.R305R	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Silent_p.R246R|ZNF577_uc002pxv.2_Silent_p.R298R|ZNF577_uc002pxw.2_Silent_p.R239R	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	305	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TAGAAGGTTCTTCCACAATCA	0.433000													50	44					0	0	0.014410	0	0	
VN1R4	317703	broad.mit.edu	37	19	53770759	53770759	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:53770759A>C	uc010ydu.1	-	1	160	c.160T>G	c.(160-162)TTC>GTC	p.F54V		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	54	Helical; Name=2; (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		AGAGCTAAGAAGTTGGCTACA	0.453000										HNSCC(26;0.072)			7	47					0	0	0.004482	0	0	
ZNF835	90485	broad.mit.edu	37	19	57175393	57175393	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:57175393A>T	uc010ygo.1	-	2	1240	c.1240T>A	c.(1240-1242)TGC>AGC	p.C414S	ZNF835_uc010ygn.1_Missense_Mutation_p.C392S	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CATTGCAGGCACCTGTAGGGC	0.662000													22	19					0	0	0.016522	0	0	
NBAS	51594	broad.mit.edu	37	2	15307367	15307367	+	Silent	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:15307367G>C	uc002rcc.1	-	52	6947	c.6921C>G	c.(6919-6921)CCC>CCG	p.P2307P	NBAS_uc002rcb.1_Silent_p.P147P|NBAS_uc010exl.1_Silent_p.P1379P|NBAS_uc002rcd.1_RNA	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2307										ovary(2)|liver(1)|skin(1)	4						GTGGATAGAAGGGAGTGGAGA	0.547000													12	13					0	0	0.010729	0	0	
TTC27	55622	broad.mit.edu	37	2	33036126	33036126	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:33036126G>A	uc002rom.2	+	17	2265	c.2034G>A	c.(2032-2034)GGG>GGA	p.G678G	TTC27_uc010ymx.1_Silent_p.G628G|TTC27_uc002ron.2_RNA	NM_017735	NP_060205	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	678							protein binding			central_nervous_system(1)	1						TGATTGATGGGATGACTGATC	0.398000													21	37					0	0	0.012319	0	0	
SLC8A1	6546	broad.mit.edu	37	2	40657171	40657171	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:40657171C>A	uc002rrx.2	-	1	274	c.250G>T	c.(250-252)GCC>TCC	p.A84S	SLC8A1_uc002rry.2_Missense_Mutation_p.A84S|SLC8A1_uc002rrz.2_Missense_Mutation_p.A84S|SLC8A1_uc002rsa.2_Missense_Mutation_p.A84S|SLC8A1_uc002rsd.3_Missense_Mutation_p.A84S|SLC8A1_uc002rsb.1_Missense_Mutation_p.A84S|SLC8A1_uc010fan.1_Missense_Mutation_p.A84S|SLC8A1_uc002rsc.1_Missense_Mutation_p.A84S	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	84	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TAGACCATGGCCACAAAATAC	0.398000													40	64					1.60099e-16	1.68938e-16	0.021022	1	0	
REG3G	130120	broad.mit.edu	37	2	79255359	79255359	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:79255359A>C	uc002snw.2	+	6	570	c.485A>C	c.(484-486)AAC>ACC	p.N162T	REG3G_uc002snx.2_Missense_Mutation_p.N162T|REG3G_uc010ffu.2_Missense_Mutation_p.N116T	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	162	C-type lectin.				acute-phase response	extracellular region	sugar binding				0						AAAGATTATAACTGTGATGCA	0.493000													13	25					0	0	0.020292	0	0	
LYG2	254773	broad.mit.edu	37	2	99860569	99860569	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:99860569G>A	uc002szw.1	-	5	526	c.413C>T	c.(412-414)GCC>GTC	p.A138V	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Missense_Mutation_p.A138V|LYG2_uc002szx.1_Missense_Mutation_p.A138V	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	138					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						GCTATCCCAGGCACCGACAGG	0.428000													24	24					0	0	0.018920	0	0	
AFF3	3899	broad.mit.edu	37	2	100368730	100368730	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:100368730G>A	uc002tag.2	-	8	1191	c.955C>T	c.(955-957)CAA>TAA	p.Q319*	AFF3_uc002taf.2_Nonsense_Mutation_p.Q344*|AFF3_uc010fiq.1_Nonsense_Mutation_p.Q319*|AFF3_uc010yvr.1_Nonsense_Mutation_p.Q473*|AFF3_uc002tah.1_Nonsense_Mutation_p.Q344*|AFF3_uc010fir.1_Nonsense_Mutation_p.Q396*	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	319					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCAGGTGCTTGAATAGCAGAA	0.408000													13	14					0	0	0.016723	0	0	
RGPD4	285190	broad.mit.edu	37	2	108488148	108488148	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:108488148G>A	uc010ywk.1	+	20	3770	c.3688G>A	c.(3688-3690)GGT>AGT	p.G1230S	RGPD4_uc002tdu.2_Missense_Mutation_p.G417S|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1230					intracellular transport		binding			skin(2)	2						AGGTGCGGCCGGTGCCTCAGA	0.403000													167	37					0	0	0.014410	0	0	
RANBP2	5903	broad.mit.edu	37	2	109347834	109347834	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:109347834G>A	uc002tem.3	+	4	435	c.309G>A	c.(307-309)TTG>TTA	p.L103L		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	103					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TTGCAGAATTGCTTTGTAAAA	0.323000													54	61					0	0	0.014410	0	0	
RANBP2	5903	broad.mit.edu	37	2	109356991	109356991	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:109356991G>A	uc002tem.3	+	7	955	c.829G>A	c.(829-831)GAA>AAA	p.E277K		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	277					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TGGAAATGATGAACTGTCAGC	0.363000													235	41					0	0	0.014410	0	0	
WASH2P	375260	broad.mit.edu	37	2	114355064	114355064	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:114355064C>T	uc002tkh.2	+	4	499	c.441C>T	c.(439-441)GTC>GTT	p.V147V	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA|WASH2P_uc010fkz.1_RNA|WASH2P_uc002tkf.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CGGCTCCAGTCCAGGGAGCTC	0.662000													4	12					0	0	0.003080	0	0	
MCM6	4175	broad.mit.edu	37	2	136626249	136626249	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:136626249G>A	uc002tuw.2	-	4	623	c.547C>T	c.(547-549)CCA>TCA	p.P183S		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	183					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	GCACAAACTGGATTTCGGCAG	0.393000													24	53					0	0	0.016522	0	0	
THSD7B	80731	broad.mit.edu	37	2	138320844	138320844	+	Silent	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:138320844A>G	uc002tva.1	+	15	3105	c.3105A>G	c.(3103-3105)GTA>GTG	p.V1035V	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGGGTTGTAGAACACTGGT	0.433000													7	15					0	0	0.003080	0	0	
LRP1B	53353	broad.mit.edu	37	2	141598520	141598520	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:141598520T>G	uc002tvj.1	-	30	6053	c.5081A>C	c.(5080-5082)AAG>ACG	p.K1694T		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1694	Extracellular (Potential).|LDL-receptor class B 15.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACACTGTGGCTTATCGATTCC	0.353000										TSP Lung(27;0.18)			35	30					0	0	0.023175	0	0	
SCN2A	6326	broad.mit.edu	37	2	166210751	166210751	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:166210751A>C	uc002udc.2	+	17	3259	c.2969A>C	c.(2968-2970)AAT>ACT	p.N990T	SCN2A_uc002udd.2_Missense_Mutation_p.N990T|SCN2A_uc002ude.2_Missense_Mutation_p.N990T	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	990	II.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AGTTCTGACAATCTTGCTGCC	0.383000													75	134					0	0	0.014410	0	0	
CSRNP3	80034	broad.mit.edu	37	2	166535567	166535567	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:166535567C>T	uc002udf.2	+	7	1438	c.1062C>T	c.(1060-1062)AGC>AGT	p.S354S	CSRNP3_uc002udg.2_Silent_p.S354S	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	354	Glu-rich.				apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						GCTTTTGCAGCGGAGTCACAG	0.438000													26	33					0	0	0.005443	0	0	
TTN	7273	broad.mit.edu	37	2	179431873	179431873	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:179431873G>C	uc010zfg.1	-	275	71506	c.71282C>G	c.(71281-71283)ACC>AGC	p.T23761S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T17456S|TTN_uc010zfi.1_Missense_Mutation_p.T17389S|TTN_uc010zfj.1_Missense_Mutation_p.T17264S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24688							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGTCGACTGGTTTCTCGCTT	0.403000													41	51					0	0	0.006230	0	0	
TTN	7273	broad.mit.edu	37	2	179498022	179498022	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:179498022G>A	uc010zfg.1	-	182	35498	c.35274C>T	c.(35272-35274)TAC>TAT	p.Y11758Y	TTN_uc010zfh.1_Silent_p.Y5453Y|TTN_uc010zfi.1_Silent_p.Y5386Y|TTN_uc010zfj.1_Silent_p.Y5261Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12685							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCTACTCCGTACAGAGGCT	0.408000													44	56					0	0	0.014410	0	0	
TTN	7273	broad.mit.edu	37	2	179560121	179560121	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:179560121T>A	uc010zfg.1	-	112	27716	c.27492A>T	c.(27490-27492)AAA>AAT	p.K9164N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K5825N|TTN_uc010fre.1_Missense_Mutation_p.K275N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10091							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGCTGGAACTTTTCTCTCAT	0.343000													22	38					0	0	0.016522	0	0	
TTN	7273	broad.mit.edu	37	2	179593353	179593353	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:179593353T>C	uc010zfg.1	-	63	15792	c.15568A>G	c.(15568-15570)AGT>GGT	p.S5190G	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S1851G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6117							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTTCAAAACTCATTGAAAAG	0.418000													15	14					0	0	0.020292	0	0	
KCTD18	130535	broad.mit.edu	37	2	201363767	201363767	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:201363767T>C	uc002uvs.2	-	4	930	c.413A>G	c.(412-414)AAT>AGT	p.N138S	KCTD18_uc002uvt.2_Missense_Mutation_p.N138S|KCTD18_uc002uvu.1_Missense_Mutation_p.N138S	NM_152387	NP_689600	Q6PI47	KCD18_HUMAN	potassium channel tetramerization domain	138						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1						TGTTGGTTTATTGCAGACTAA	0.323000													38	22					0	0	0.017118	0	0	
INO80D	54891	broad.mit.edu	37	2	206927685	206927685	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:206927685G>A	uc002vaz.3	-	3	461	c.56C>T	c.(55-57)TCA>TTA	p.S19L		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	19					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						GGGGCTATATGAGCACAAGGG	0.478000													5	11					0	0	0.021553	0	0	
MAP2	4133	broad.mit.edu	37	2	210574735	210574735	+	Silent	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:210574735T>A	uc002vde.1	+	12	5078	c.4830T>A	c.(4828-4830)TCT>TCA	p.S1610S	MAP2_uc002vdd.1_Silent_p.S311S|MAP2_uc002vdf.1_Silent_p.S254S|MAP2_uc002vdg.1_Silent_p.S254S|MAP2_uc002vdh.1_Silent_p.S311S|MAP2_uc002vdi.1_Silent_p.S1606S	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1610					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	CAAGTTATTCTTCACGCACAC	0.582000													32	41					0	0	0.010818	0	0	
CPS1	1373	broad.mit.edu	37	2	211465397	211465397	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:211465397G>A	uc002vee.3	+	15	1800	c.1668G>A	c.(1666-1668)GAG>GAA	p.E556E	CPS1_uc010fur.2_Silent_p.E562E|CPS1_uc010fus.2_Silent_p.E105E	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	556	ATP-grasp 1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AACTAAATGAGATCAATGAAA	0.413000													27	58					0	0	0.007291	0	0	
UGT1A5	54579	broad.mit.edu	37	2	234681146	234681146	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr2:234681146C>T	uc002vuw.2	+	5	1546	c.1546C>T	c.(1546-1548)CGG>TGG	p.R516W	UGT1A8_uc002vup.2_Missense_Mutation_p.R512W|UGT1A10_uc002vur.2_Missense_Mutation_p.R512W|UGT1A9_uc002vus.2_Missense_Mutation_p.R512W|UGT1A7_uc002vut.2_Missense_Mutation_p.R512W|UGT1A6_uc002vuu.2_Missense_Mutation_p.R247W|UGT1A6_uc002vuv.3_Missense_Mutation_p.R514W|UGT1A4_uc002vux.2_Missense_Mutation_p.R516W|UGT1A3_uc002vuy.2_Missense_Mutation_p.R516W|UGT1A9_uc002vva.2_RNA|UGT1A1_uc002vvb.2_Missense_Mutation_p.R515W	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	516					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		TTATGGCTACCGGAAATGCTT	0.468000													20	22					0	0	0.007413	0	0	
PROKR2	128674	broad.mit.edu	37	20	5282999	5282999	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr20:5282999A>C	uc010zqw.1	-	2	842	c.842T>G	c.(841-843)CTC>CGC	p.L281R	PROKR2_uc010zqx.1_Missense_Mutation_p.L281R|PROKR2_uc010zqy.1_Missense_Mutation_p.L281R	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	281	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						ATAGGCCGTGAGAATGCACAT	0.587000										HNSCC(71;0.22)			23	79					0	0	0.012319	0	0	
PYGB	5834	broad.mit.edu	37	20	25276278	25276278	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr20:25276278G>A	uc002wup.2	+	19	2460	c.2351G>A	c.(2350-2352)TGC>TAC	p.C784Y	ABHD12_uc002wuq.2_Intron|ABHD12_uc002wur.2_Intron	NM_002862	NP_002853	P11216	PYGB_HUMAN	brain glycogen phosphorylase	784					glucose metabolic process|glycogen catabolic process	cytoplasm	glycogen phosphorylase activity|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					Pyridoxal Phosphate(DB00114)	TACATGCAGTGCCAGGCACAG	0.607000													18	104					0	0	0.007413	0	0	
FAM83C	128876	broad.mit.edu	37	20	33874645	33874645	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr20:33874645C>A	uc010zux.1	-	4	2055	c.1937G>T	c.(1936-1938)GGT>GTT	p.G646V	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.G301V	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	646										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			AGGCCCCTCACCACGGAATGG	0.642000													14	71					6.72482e-11	7.01012e-11	0.003163	1	0	
CHD6	84181	broad.mit.edu	37	20	40049347	40049347	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr20:40049347G>A	uc002xka.1	-	31	6106	c.5928C>T	c.(5926-5928)GCC>GCT	p.A1976A		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1976					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CACCCTCCATGGCGATAGTAT	0.433000													38	296					0	0	0.007835	0	0	
CHD6	84181	broad.mit.edu	37	20	40049356	40049356	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr20:40049356A>C	uc002xka.1	-	31	6097	c.5919T>G	c.(5917-5919)AAT>AAG	p.N1973K		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1973					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TGGCGATAGTATTGGTTTTAC	0.443000													48	313					0	0	0.014410	0	0	
MMP9	4318	broad.mit.edu	37	20	44639165	44639165	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr20:44639165G>A	uc002xqz.2	+	3	434	c.415G>A	c.(415-417)GAC>AAC	p.D139N		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	139					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	GGTGATTGACGACGCCTTTGC	0.612000													11	100					0	0	0.020292	0	0	
TPTE	7179	broad.mit.edu	37	21	10908834	10908834	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr21:10908834T>A	uc002yip.1	-	23	1879	c.1511A>T	c.(1510-1512)GAA>GTA	p.E504V	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.E486V|TPTE_uc002yir.1_Missense_Mutation_p.E466V|TPTE_uc010gkv.1_Missense_Mutation_p.E366V	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	504	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCTGTTATTTTCAATAAAAGA	0.299000													18	33					0	0	0.008871	0	0	
TPTE	7179	broad.mit.edu	37	21	10934995	10934995	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr21:10934995T>C	uc002yip.1	-	15	1166	c.798A>G	c.(796-798)GAA>GAG	p.E266E	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.E248E|TPTE_uc002yir.1_Silent_p.E228E|TPTE_uc010gkv.1_Silent_p.E128E	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	266	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ACCGCACAACTTCCTAAAAAA	0.333000													13	123					0	0	0.020292	0	0	
TPTE	7179	broad.mit.edu	37	21	10971302	10971302	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr21:10971302G>A	uc002yip.1	-	5	423	c.55C>T	c.(55-57)CCC>TCC	p.P19S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P19S|TPTE_uc002yir.1_Missense_Mutation_p.P19S|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	19					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTGTCATTGGGGCCGAGCTCA	0.303000													7	33					0	0	0.001984	0	0	
TRPM2	7226	broad.mit.edu	37	21	45820246	45820246	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr21:45820246C>T	uc002zet.1	+	16	2526	c.2313C>T	c.(2311-2313)ATC>ATT	p.I771I	TRPM2_uc002zeu.1_Silent_p.I771I|TRPM2_uc002zew.1_Silent_p.I771I|TRPM2_uc010gpt.1_Silent_p.I771I|TRPM2_uc002zex.1_Silent_p.I557I|TRPM2_uc002zey.1_Silent_p.I284I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	771	Helical; (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CCGGCCTCATCTCCTTCAGGT	0.488000													7	13					0	0	0.001984	0	0	
PCBP3	54039	broad.mit.edu	37	21	47321018	47321018	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr21:47321018G>C	uc002zhq.1	+	5	455	c.330G>C	c.(328-330)AAG>AAC	p.K110N	PCBP3_uc010gqb.2_Missense_Mutation_p.K110N|PCBP3_uc002zhp.1_Missense_Mutation_p.K110N|PCBP3_uc010gqc.1_Missense_Mutation_p.K110N|PCBP3_uc002zhs.1_Missense_Mutation_p.K110N|PCBP3_uc002zhr.1_Missense_Mutation_p.K110N|PCBP3_uc002zht.1_Missense_Mutation_p.K78N	NM_020528	NP_065389	P57721	PCBP3_HUMAN	poly(rC) binding protein 3 isoform 1	110					mRNA metabolic process	cytosol|mitochondrion|nucleus|ribonucleoprotein complex	DNA binding|RNA binding			skin(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0411)|READ - Rectum adenocarcinoma(84;0.0649)		TCGCATACAAGTTTGAGGAGG	0.597000													14	32					0	0	0.003163	0	0	
PRAME	23532	broad.mit.edu	37	22	22891014	22891014	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr22:22891014C>T	uc002zwf.2	-	5	1161	c.1005G>A	c.(1003-1005)TCG>TCA	p.S335S	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.S319S|PRAME_uc010gtr.2_Silent_p.S335S|PRAME_uc002zwg.2_Silent_p.S335S|PRAME_uc002zwh.2_Silent_p.S335S|PRAME_uc002zwi.2_Silent_p.S335S|PRAME_uc002zwj.2_Silent_p.S335S|PRAME_uc002zwk.2_Silent_p.S335S	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	335	LRR 1.				apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		CATCCCCTTCCGAAAGCCGGC	0.542000													33	112					0	0	0.012213	0	0	
ZNF70	7621	broad.mit.edu	37	22	24087318	24087318	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr22:24087318G>A	uc002zxs.2	-	2	471	c.10C>T	c.(10-12)CCC>TCC	p.P4S	ZNF70_uc002zxr.1_5'Flank	NM_021916	NP_068735	Q9UC06	ZNF70_HUMAN	zinc finger protein 70	4						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						GTTGCTGGGGGAACCTCCATT	0.438000													9	94					0	0	0.006214	0	0	
C22orf36	388886	broad.mit.edu	37	22	24985869	24985869	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr22:24985869C>T	uc003aaq.2	-	2	255	c.226G>A	c.(226-228)GTG>ATG	p.V76M	GGT1_uc003aan.1_Intron|C22orf36_uc003aao.2_5'Flank|C22orf36_uc003aap.2_RNA	NM_207644	NP_997527	Q2VPJ9	LRC6X_HUMAN	hypothetical protein LOC388886	76											0						AGGAAGGCCACATCTCTGTAG	0.607000													3	10					0	0	0.004672	0	0	
GRM7	2917	broad.mit.edu	37	3	6903438	6903438	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:6903438T>C	uc003bqm.2	+	1	637	c.363T>C	c.(361-363)ACT>ACC	p.T121T	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.T121T|GRM7_uc003bql.2_Silent_p.T121T	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	121	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AGTCGCTTACTTTCGTCCAGG	0.582000													14	35					0	0	0.020292	0	0	
ARPP21	10777	broad.mit.edu	37	3	35835432	35835432	+	Silent	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:35835432T>A	uc003cgb.2	+	20	2685	c.2421T>A	c.(2419-2421)GGT>GGA	p.G807G	ARPP21_uc003cga.2_Silent_p.G788G|ARPP21_uc011axy.1_Silent_p.G808G|ARPP21_uc003cgf.2_Silent_p.G643G|ARPP21_uc003cgg.2_Silent_p.G330G	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	807						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						GCAATGCTGGTTGGCAGGTCA	0.498000													16	13					0	0	0.003163	0	0	
NISCH	11188	broad.mit.edu	37	3	52521668	52521668	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:52521668C>T	uc011beg.1	+	17	2232	c.2160C>T	c.(2158-2160)GGC>GGT	p.G720G	NISCH_uc003ded.3_Silent_p.G720G|NISCH_uc003dee.3_Silent_p.G209G|NISCH_uc003deg.1_RNA	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	720	Interaction with LIMK (By similarity).|Interaction with ITGA5 (By similarity).|Interaction with PAK1 (By similarity).				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		ATGTGCAGGGCAGTATCCGCC	0.642000													32	20					0	0	0.010818	0	0	
EPHA3	2042	broad.mit.edu	37	3	89468410	89468410	+	Silent	SNP	T	C	C	rs138119313		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:89468410T>C	uc003dqy.2	+	11	2169	c.1944T>C	c.(1942-1944)ATT>ATC	p.I648I	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	648	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		AAAAAGAGATTTCAGTGGCCA	0.413000										TSP Lung(6;0.00050)			42	27					0	0	0.007835	0	0	
LNP1	348801	broad.mit.edu	37	3	100170656	100170656	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:100170656G>A	uc003dtx.3	+	3	1530	c.250G>A	c.(250-252)GAT>AAT	p.D84N	LNP1_uc003dty.3_RNA|LNP1_uc011bhb.1_RNA	NM_001085451	NP_001078920	A1A4G5	LNP1_HUMAN	leukemia NUP98 fusion partner 1	84											0						CCACGTACGGGATTACAGAAA	0.448000													41	32					0	0	0.013114	0	0	
CD200R1L	344807	broad.mit.edu	37	3	112548191	112548191	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:112548191C>A	uc003dzi.1	-	2	313	c.87G>T	c.(85-87)CAG>CAT	p.Q29H	CD200R1L_uc011bhw.1_Missense_Mutation_p.Q8H|CD200R1L_uc010hqf.1_Missense_Mutation_p.Q8H	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	29	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						TTGAATAGTTCTGTGTCATCT	0.383000													23	36					9.04412e-07	9.25946e-07	0.004656	1	0	
CASR	846	broad.mit.edu	37	3	121981057	121981057	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:121981057G>A	uc003eev.3	+	4	1547	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	CASR_uc003eew.3_Missense_Mutation_p.R392Q	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	392	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	ACAGCCTTCCGACCCCTCTGT	0.493000													32	22					0	0	0.012213	0	0	
P2RY13	53829	broad.mit.edu	37	3	151046346	151046346	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:151046346G>A	uc003eyv.2	-	2	519	c.498C>T	c.(496-498)TTC>TTT	p.F166F	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	166	Helical; Name=4; (Potential).					integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			AGAACCAGATGAAGATTGAGA	0.398000													39	28					0	0	0.023175	0	0	
GHSR	2693	broad.mit.edu	37	3	172165990	172165990	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:172165990G>A	uc003fib.1	-	1	214	c.214C>T	c.(214-216)CGC>TGC	p.R72C	GHSR_uc011bpv.1_Missense_Mutation_p.R72C	NM_198407	NP_940799	Q92847	GHSR_HUMAN	growth hormone secretagogue receptor isoform 1a	72	Cytoplasmic (Potential).				actin polymerization or depolymerization|adult feeding behavior|decidualization|growth hormone secretion|hormone-mediated signaling pathway|negative regulation of inflammatory response|negative regulation of interleukin-1 beta production|negative regulation of interleukin-6 biosynthetic process|negative regulation of tumor necrosis factor biosynthetic process|positive regulation of appetite|positive regulation of multicellular organism growth	cell surface|integral to membrane|membrane raft|neuron projection|plasma membrane	growth hormone secretagogue receptor activity|growth hormone-releasing hormone receptor activity			lung(3)|ovary(1)|central_nervous_system(1)	5	Ovarian(172;0.00143)|Breast(254;0.197)		Lung(28;3.93e-15)|LUSC - Lung squamous cell carcinoma(14;1.48e-14)|STAD - Stomach adenocarcinoma(35;0.235)			CGCAGCTCGCGGAAGCGCGAC	0.662000													20	21					0	0	0.010504	0	0	
NLGN1	22871	broad.mit.edu	37	3	173997382	173997382	+	Missense_Mutation	SNP	A	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:173997382A>T	uc003fio.1	+	6	2014	c.1591A>T	c.(1591-1593)AAT>TAT	p.N531Y	NLGN1_uc010hww.1_Missense_Mutation_p.N571Y|NLGN1_uc003fip.1_Missense_Mutation_p.N531Y	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	548	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			TTTCTCCAAAAATGATGTGAT	0.403000													19	37					0	0	0.007413	0	0	
NAALADL2	254827	broad.mit.edu	37	3	174814991	174814991	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:174814991C>T	uc003fit.2	+	2	542	c.455C>T	c.(454-456)TCA>TTA	p.S152L	NAALADL2_uc003fiu.1_Missense_Mutation_p.S145L	NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	152	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		AATTGCCCTTCAGATGCTCCA	0.373000													45	69					0	0	0.011902	0	0	
IL1RAP	3556	broad.mit.edu	37	3	190366294	190366294	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr3:190366294G>A	uc003fsm.1	+	12	1719	c.1513G>A	c.(1513-1515)GCT>ACT	p.A505T	IL1RAP_uc010hzg.1_Missense_Mutation_p.A505T|IL1RAP_uc003fsn.1_RNA|IL1RAP_uc003fso.1_Missense_Mutation_p.A505T|IL1RAP_uc003fsp.1_RNA|IL1RAP_uc003fsq.2_Intron	NM_002182	NP_002173	Q9NPH3	IL1AP_HUMAN	interleukin 1 receptor accessory protein isoform	505	Cytoplasmic (Potential).|TIR.				inflammatory response|innate immune response|protein complex assembly	extracellular region|integral to plasma membrane				ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0733)|Breast(254;0.21)		Lung(62;1.95e-06)|LUSC - Lung squamous cell carcinoma(58;2.05e-06)	GBM - Glioblastoma multiforme(93;0.00851)		ACAGTACAAAGCTGTGAAGGA	0.502000													25	82					0	0	0.018920	0	0	
WHSC1	7468	broad.mit.edu	37	4	1980505	1980505	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:1980505T>C	uc003gdz.3	+	22	4143	c.3967T>C	c.(3967-3969)TGC>CGC	p.C1323R	WHSC1_uc003geb.3_Missense_Mutation_p.C1323R|WHSC1_uc003gec.3_Missense_Mutation_p.C1323R|WHSC1_uc003ged.3_Missense_Mutation_p.C1323R|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_Missense_Mutation_p.C542R|WHSC1_uc011bvh.1_Missense_Mutation_p.C384R|WHSC1_uc010icf.2_Missense_Mutation_p.C671R	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	1323					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		GCGGTCCTACTGCTGTGAGCA	0.622000			T	IGH@	MM								18	10					0	0	0.014323	0	0	
CLRN2	645104	broad.mit.edu	37	4	17528460	17528460	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:17528460A>G	uc003gpg.1	+	3	556	c.454A>G	c.(454-456)ATC>GTC	p.I152V		NM_001079827	NP_001073296	A0PK11	CLRN2_HUMAN	clarin 2	152	Helical; (Potential).					integral to membrane					0						GGCGTTAGCCATCGCCAGCTT	0.522000													12	9					0	0	0.020292	0	0	
KLB	152831	broad.mit.edu	37	4	39439358	39439358	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:39439358G>A	uc003gua.2	+	3	1445	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N	KLB_uc011byj.1_Missense_Mutation_p.D450N	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	450	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						AATAAGGTTAGATGAAATACG	0.418000													33	55					0	0	0.017118	0	0	
NPFFR2	10886	broad.mit.edu	37	4	73012916	73012916	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:73012916A>G	uc003hgg.2	+	4	1054	c.956A>G	c.(955-957)AAG>AGG	p.K319R	NPFFR2_uc010iig.1_Missense_Mutation_p.K101R|NPFFR2_uc003hgi.2_Missense_Mutation_p.K220R|NPFFR2_uc003hgh.2_Missense_Mutation_p.K217R|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	319	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			GAAATGAGGAAGATCTACACC	0.473000													28	35					0	0	0.006320	0	0	
STBD1	8987	broad.mit.edu	37	4	77230709	77230709	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:77230709T>C	uc003hka.2	+	2	879	c.633T>C	c.(631-633)TCT>TCC	p.S211S	STBD1_uc003hjy.2_3'UTR|STBD1_uc011cbv.1_3'UTR|STBD1_uc011cbw.1_Silent_p.S62S	NM_003943	NP_003934	O95210	STBD1_HUMAN	starch binding domain 1	211	Cytoplasmic (Potential).				carbohydrate metabolic process|muscle contraction	integral to plasma membrane|membrane fraction	carbohydrate binding|catalytic activity|protein binding			ovary(1)	1			Lung(101;0.196)			GGCACTCATCTTGGGGGGATG	0.502000													13	25					0	0	0.016723	0	0	
MTTP	4547	broad.mit.edu	37	4	100528022	100528022	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:100528022A>G	uc003hvc.3	+	12	1718	c.1462A>G	c.(1462-1464)AGT>GGT	p.S488G	MTTP_uc011cej.1_Missense_Mutation_p.S515G	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	488	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AGGCATCCCAAGTCTTCTGAA	0.478000													14	24					0	0	0.020292	0	0	
H2AFZ	3015	broad.mit.edu	37	4	100870839	100870839	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:100870839G>A	uc003hvo.1	-	2	247	c.62C>T	c.(61-63)TCG>TTG	p.S21L	DNAJB14_uc003hvl.2_5'Flank|DNAJB14_uc010ili.2_5'Flank|DNAJB14_uc003hvm.2_5'Flank|H2AFZ_uc003hvn.1_Missense_Mutation_p.S21L|LOC256880_uc003hvp.1_5'Flank	NM_002106	NP_002097	P0C0S5	H2AZ_HUMAN	H2A histone family, member Z	21					nucleosome assembly	nucleosome|nucleus	DNA binding				0				OV - Ovarian serous cystadenocarcinoma(123;2.32e-08)		GGCTCTCTGCGAGCGGGAAAC	0.567000													28	49					0	0	0.009535	0	0	
NDST3	9348	broad.mit.edu	37	4	119158338	119158338	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:119158338T>G	uc003ibx.2	+	10	2484	c.2081T>G	c.(2080-2082)CTC>CGC	p.L694R	NDST3_uc011cgf.1_3'UTR	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	694	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						ATCACCATTCTCATTGACCCT	0.443000													14	19					0	0	0.020292	0	0	
PDGFC	56034	broad.mit.edu	37	4	157732094	157732094	+	Silent	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:157732094T>A	uc003iph.1	-	3	881	c.390A>T	c.(388-390)CCA>CCT	p.P130P	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_5'UTR|PDGFC_uc011cir.1_Intron	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	130	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TCTGTTTTCCTGGTACAGTAC	0.388000													23	42					0	0	0.014323	0	0	
VEGFC	7424	broad.mit.edu	37	4	177713384	177713384	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:177713384C>T	uc003ius.1	-	1	512	c.82G>A	c.(82-84)GCC>ACC	p.A28T		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	28					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		gcggcggcggcggcgggcgcc	0.562000													7	5					0	0	0.001984	0	0	
AGA	175	broad.mit.edu	37	4	178363527	178363527	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr4:178363527C>T	uc003iuu.1	-	1	65	c.3G>A	c.(1-3)ATG>ATA	p.M1I	uc003iux.1_5'Flank|AGA_uc003iuv.1_5'Flank|AGA_uc003iuw.2_5'Flank	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	1					asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		ACTTCCGCGCCATCCCTGACC	0.657000													14	17					0	0	0.003163	0	0	
CTNND2	1501	broad.mit.edu	37	5	11411757	11411757	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:11411757T>G	uc003jfa.1	-	5	475	c.330A>C	c.(328-330)CAA>CAC	p.Q110H	CTNND2_uc010itt.2_Missense_Mutation_p.Q19H|CTNND2_uc011cmy.1_Missense_Mutation_p.Q19H|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	110					multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CGATATCTTTTTGACCATCTG	0.343000													19	27					0	0	0.007413	0	0	
FBXL7	23194	broad.mit.edu	37	5	15937126	15937126	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:15937126A>G	uc003jfn.1	+	4	1788	c.1307A>G	c.(1306-1308)AAG>AGG	p.K436R		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	436	LRR 10.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						CTCAGCCTCAAGTCCTGCGAG	0.592000													22	12					0	0	0.010504	0	0	
MYO10	4651	broad.mit.edu	37	5	16671582	16671582	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:16671582G>A	uc003jft.3	-	38	5847	c.5379C>T	c.(5377-5379)GAC>GAT	p.D1793D	MYO10_uc011cnb.1_Silent_p.D422D|MYO10_uc011cnc.1_Silent_p.D672D|MYO10_uc011cnd.1_Silent_p.D1150D|MYO10_uc011cne.1_Silent_p.D1150D|MYO10_uc010itx.2_Silent_p.D1415D	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1793	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						CGTTGTCTGTGTCCAGGAAGC	0.463000													14	31					0	0	0.016723	0	0	
PARP8	79668	broad.mit.edu	37	5	50117139	50117139	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:50117139T>C	uc003jon.3	+	17	1943	c.1761T>C	c.(1759-1761)CCT>CCC	p.P587P	PARP8_uc011cpz.1_Silent_p.P479P|PARP8_uc003joo.2_Silent_p.P587P|PARP8_uc003jop.2_Intron	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	587						intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TGGTAGATCCTAATGATCCTC	0.393000													27	8					0	0	0.009535	0	0	
PCDHB3	56132	broad.mit.edu	37	5	140481367	140481367	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:140481367C>T	uc003lio.2	+	1	1134	c.1134C>T	c.(1132-1134)AAC>AAT	p.N378N	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	378	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGAGACAACGGAAGAGTGA	0.473000													20	37					0	0	0.012319	0	0	
PCDHB17	54661	broad.mit.edu	37	5	140536790	140536790	+	Nonsense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:140536790T>G	uc003lis.2	+	1	1211	c.1211T>G	c.(1210-1212)TTA>TGA	p.L404*		NR_001280				SubName: Full=Protocadherin-psi1;												0						TACACTTTGTTAACAGAAGGA	0.463000													13	19					0	0	0.016723	0	0	
FCHSD1	89848	broad.mit.edu	37	5	141026260	141026260	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:141026260G>A	uc003llk.2	-	11	1005	c.954C>T	c.(952-954)GGC>GGT	p.G318G	FCHSD1_uc010jgg.2_5'UTR|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	318									FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCAGCCACGCCTTCTGCTC	0.602000													9	13					0	0	0.008291	0	0	
GABRA6	2559	broad.mit.edu	37	5	161113263	161113263	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:161113263A>C	uc003lyu.2	+	2	404	c.66A>C	c.(64-66)GAA>GAC	p.E22D		NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	22	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGAAACTCGAAGTTGAAGGCA	0.478000										TCGA Ovarian(5;0.080)			24	40					0	0	0.016522	0	0	
ELOVL2	54898	broad.mit.edu	37	6	10995345	10995345	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:10995345C>T	uc003mzp.3	-	5	561	c.400G>A	c.(400-402)GTT>ATT	p.V134I		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	134					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			TTCCGCAAAACGAAGAAAATT	0.393000													27	42					0	0	0.004656	0	0	
MYLIP	29116	broad.mit.edu	37	6	16143326	16143326	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:16143326G>A	uc003nbq.2	+	4	777	c.540G>A	c.(538-540)TCG>TCA	p.S180S	MYLIP_uc003nbr.2_5'UTR	NM_013262	NP_037394	Q8WY64	MYLIP_HUMAN	myosin regulatory light chain interacting	180	FERM.				cellular component movement|nervous system development	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1	Breast(50;0.0799)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.241)			AGATTGTGTCGGCAATGGAAA	0.478000													20	33					0	0	0.007413	0	0	
SLC17A1	6568	broad.mit.edu	37	6	25820066	25820066	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:25820066T>C	uc003nfh.3	-	4	401	c.285A>G	c.(283-285)CAA>CAG	p.Q95Q	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.Q93Q|SLC17A1_uc010jqc.1_Silent_p.Q93Q	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	95	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						CAACAGGAACTTGGATGATGA	0.438000													34	42					0	0	0.021022	0	0	
SLC17A3	10786	broad.mit.edu	37	6	25850086	25850086	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:25850086T>A	uc003nfi.3	-	9	1094	c.984A>T	c.(982-984)TTA>TTT	p.L328F	SLC17A3_uc003nfk.3_Missense_Mutation_p.L406F	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	328	Helical; (Potential).				glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						ACAATGTGCTTAATCCGCAAG	0.433000													27	34					0	0	0.004656	0	0	
VARS2	57176	broad.mit.edu	37	6	30890003	30890003	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:30890003G>A	uc003nsc.1	+	19	2549	c.1917G>A	c.(1915-1917)CAG>CAA	p.Q639Q	VARS2_uc011dmx.1_Silent_p.Q639Q|VARS2_uc011dmy.1_Silent_p.Q499Q|VARS2_uc011dmz.1_Silent_p.Q669Q|VARS2_uc011dna.1_Silent_p.Q637Q|VARS2_uc011dnb.1_RNA|VARS2_uc011dnc.1_RNA|VARS2_uc011dnd.1_Missense_Mutation_p.A55T|VARS2_uc010jsg.1_Silent_p.Q11Q|VARS2_uc010jsh.1_5'Flank	NM_020442	NP_065175	Q5ST30	SYVM_HUMAN	valyl-tRNA synthetase 2, mitochondrial	639					valyl-tRNA aminoacylation	mitochondrion	ATP binding|valine-tRNA ligase activity			ovary(3)|central_nervous_system(1)	4						TCACAGGGCAGCTGCCCTTCA	0.577000													26	27					0	0	0.021523	0	0	
SLC26A8	116369	broad.mit.edu	37	6	35965625	35965625	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:35965625C>T	uc003olm.2	-	5	628	c.517G>A	c.(517-519)GTC>ATC	p.V173I	SLC26A8_uc003oln.2_Missense_Mutation_p.V173I|SLC26A8_uc003oll.2_Missense_Mutation_p.V173I	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	173	Extracellular (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GATCCCATGACCAGTTGACCG	0.473000													23	38					0	0	0.014323	0	0	
PKHD1	5314	broad.mit.edu	37	6	51484093	51484093	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:51484093T>C	uc003pah.1	-	67	12287	c.12011A>G	c.(12010-12012)GAG>GGG	p.E4004G		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	4004	Cytoplasmic (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					GAGCAACTGCTCTTGGCCCTC	0.572000													28	28					0	0	0.005443	0	0	
MANEA	79694	broad.mit.edu	37	6	96054138	96054138	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:96054138C>T	uc003poo.1	+	5	1386	c.1246C>T	c.(1246-1248)CCC>TCC	p.P416S		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	416	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		AAAAGCTGTTCCCAAAAGAAC	0.423000													19	31					0	0	0.007413	0	0	
C6orf167	253714	broad.mit.edu	37	6	97629852	97629852	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:97629852T>A	uc003ppb.2	-	16	2578	c.2312A>T	c.(2311-2313)CAA>CTA	p.Q771L	C6orf167_uc011eaf.1_Missense_Mutation_p.Q731L	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	771					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		ACCAAAAAGTTGAATAATTGA	0.378000													44	64					0	0	0.014410	0	0	
C6orf167	253714	broad.mit.edu	37	6	97629859	97629859	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:97629859T>G	uc003ppb.2	-	16	2571	c.2305A>C	c.(2305-2307)ATT>CTT	p.I769L	C6orf167_uc011eaf.1_Missense_Mutation_p.I729L	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	769					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		AGTTGAATAATTGATATAACT	0.373000													50	65					0	0	0.014410	0	0	
RFPL4B	442247	broad.mit.edu	37	6	112671377	112671377	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:112671377A>C	uc003pvx.1	+	3	779	c.467A>C	c.(466-468)AAG>ACG	p.K156T		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	156	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		GGAGAGGTGAAGTCATGGTCC	0.552000													18	31					0	0	0.004990	0	0	
ROS1	6098	broad.mit.edu	37	6	117710930	117710930	+	Missense_Mutation	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:117710930G>C	uc003pxp.1	-	12	1541	c.1342C>G	c.(1342-1344)CGT>GGT	p.R448G	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	448	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TCCACAATACGCACAGCTTCT	0.448000			T	GOPC|ROS1	glioblastoma|NSCLC								17	29					0	0	0.007413	0	0	
MYB	4602	broad.mit.edu	37	6	135539112	135539112	+	Silent	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:135539112C>A	uc003qfc.2	+	15	2116	c.1917C>A	c.(1915-1917)GTC>GTA	p.V639V	MYB_uc003qfh.2_Silent_p.V760V|MYB_uc003qfi.2_Silent_p.V744V|MYB_uc010kgi.2_Silent_p.V602V|MYB_uc003qfq.2_Silent_p.V757V|MYB_uc010kgj.2_Silent_p.V604V|MYB_uc003qfo.2_Silent_p.V554V|MYB_uc003qfu.2_Silent_p.V636V|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_Silent_p.V265V|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Silent_p.V451V|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	639					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		GGACGCTGGTCATGTGAGACA	0.438000			T	NFIB	adenoid cystic carcinoma								20	24					5.35267e-07	5.49647e-07	0.007413	1	0	
KATNA1	11104	broad.mit.edu	37	6	149916259	149916259	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:149916259C>T	uc003qmr.1	-	10	1434	c.1389G>A	c.(1387-1389)GAG>GAA	p.E463E	KATNA1_uc003qms.2_Silent_p.E463E|KATNA1_uc003qmt.2_3'UTR	NM_007044	NP_008975	O75449	KTNA1_HUMAN	katanin p60 subunit A 1	463					cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			skin(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		TTAAAGCCATCTCGAAATCCT	0.393000													18	26					0	0	0.004990	0	0	
SYNE1	23345	broad.mit.edu	37	6	152751256	152751256	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:152751256T>A	uc010kiw.2	-	36	5381	c.4779A>T	c.(4777-4779)CAA>CAT	p.Q1593H	SYNE1_uc003qot.3_Missense_Mutation_p.Q1600H|SYNE1_uc003qou.3_Missense_Mutation_p.Q1593H|SYNE1_uc010kjb.1_Missense_Mutation_p.Q1576H|SYNE1_uc003qow.2_Missense_Mutation_p.Q888H	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1593	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCATATGTTCTTGAAGAACTT	0.294000										HNSCC(10;0.0054)			7	6					0	0	0.001984	0	0	
TIAM2	26230	broad.mit.edu	37	6	155465823	155465823	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:155465823G>A	uc003qqb.2	+	8	2987	c.1714G>A	c.(1714-1716)GAC>AAC	p.D572N	TIAM2_uc003qqe.2_Missense_Mutation_p.D572N|TIAM2_uc010kjj.2_Missense_Mutation_p.D105N	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	572	PH 1.				apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GTTTGCAGAAGACAGCATAGT	0.488000													28	30					0	0	0.005443	0	0	
TIAM2	26230	broad.mit.edu	37	6	155485683	155485683	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:155485683G>A	uc003qqb.2	+	10	3436	c.2163G>A	c.(2161-2163)AAG>AAA	p.K721K	TIAM2_uc003qqe.2_Silent_p.K721K|TIAM2_uc010kjj.2_Silent_p.K254K|TIAM2_uc003qqf.2_Silent_p.K73K|TIAM2_uc011efl.1_Silent_p.K33K|TIAM2_uc003qqg.2_Silent_p.K33K	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	721					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		GCCCCTCCAAGCTGGCCCTCG	0.592000													35	49					0	0	0.013726	0	0	
PNLDC1	154197	broad.mit.edu	37	6	160225002	160225002	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr6:160225002T>G	uc003qsx.1	+	5	392	c.221T>G	c.(220-222)ATA>AGA	p.I74R	PNLDC1_uc003qsy.1_Missense_Mutation_p.I85R	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	74	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		TATAGGTATATAGCCCATTCT	0.408000													36	63					0	0	0.015359	0	0	
CLK2P	1197	broad.mit.edu	37	7	23625889	23625889	+	Translation_Start_Site	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:23625889G>A	uc003swk.2	-	1	258	c.-392C>T	c.(-394--390)AACGA>AATGA			NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						CGGCTTCTTCGTTGCTTGTTT	0.592000													16	22					0	0	0.004990	0	0	
VPS41	27072	broad.mit.edu	37	7	38783011	38783011	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:38783011C>T	uc003tgy.2	-	24	2139	c.2113G>A	c.(2113-2115)GAC>AAC	p.D705N	VPS41_uc003tgz.2_Missense_Mutation_p.D680N|VPS41_uc010kxn.2_Missense_Mutation_p.D616N|VPS41_uc003tgx.2_RNA	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	705	Clathrin.				Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						CGTGGTTTGTCAATGGAATAT	0.343000													28	66					0	0	0.005443	0	0	
MLXIPL	51085	broad.mit.edu	37	7	73008307	73008307	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:73008307A>C	uc003tyn.1	-	17	2495	c.2447T>G	c.(2446-2448)CTG>CGG	p.L816R	MLXIPL_uc003tyj.1_Missense_Mutation_p.L195R|MLXIPL_uc003tyk.1_Missense_Mutation_p.L795R|MLXIPL_uc003tyl.1_Missense_Mutation_p.L814R|MLXIPL_uc003tym.1_Missense_Mutation_p.L797R|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_3'UTR	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	816					anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				TAGGGAGTTCAGGACAGCTGG	0.607000													20	28					0	0	0.012319	0	0	
MAGI2	9863	broad.mit.edu	37	7	78636484	78636484	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:78636484A>C	uc003ugx.2	-	2	594	c.340T>G	c.(340-342)TTA>GTA	p.L114V	MAGI2_uc003ugy.2_Missense_Mutation_p.L114V	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	114	Guanylate kinase-like.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TGAAATCGTAAGTTGAGGTAG	0.388000													34	48					0	0	0.013726	0	0	
CACNA2D1	781	broad.mit.edu	37	7	81746398	81746398	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:81746398T>C	uc003uhr.1	-	6	744	c.488A>G	c.(487-489)CAC>CGC	p.H163R		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	163	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	GACTGCTGCGTGCTGATAAGA	0.408000													48	76					0	0	0.014410	0	0	
PCLO	27445	broad.mit.edu	37	7	82545288	82545288	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:82545288T>G	uc003uhx.2	-	7	12303	c.12014A>C	c.(12013-12015)AAG>ACG	p.K4005T	PCLO_uc003uhv.2_Missense_Mutation_p.K4005T|PCLO_uc010lec.2_Missense_Mutation_p.K970T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3936					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTATTGTACTTACTACCAAG	0.393000													205	231					0	0	0.014410	0	0	
ABCB1	5243	broad.mit.edu	37	7	87148690	87148690	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:87148690C>T	uc003uiz.1	-	24	3297	c.2879G>A	c.(2878-2880)GGA>GAA	p.G960E	ABCB1_uc011khc.1_Missense_Mutation_p.G896E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	960	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CAAGTAGGCTCCAAACCGGAA	0.313000													26	56					0	0	0.018920	0	0	
CCDC132	55610	broad.mit.edu	37	7	92983058	92983058	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:92983058G>A	uc003umo.2	+	26	2698	c.2570G>A	c.(2569-2571)CGA>CAA	p.R857Q	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.R827Q|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Missense_Mutation_p.R577Q	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	857											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGGCTAATCGAACTATTGTA	0.338000													28	153					0	0	0.004656	0	0	
MUC17	140453	broad.mit.edu	37	7	100674400	100674400	+	Splice_Site	SNP	G	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:100674400G>C	uc003uxp.1	+	2	136	c.83_splice	c.e2-1	p.D28_splice	MUC17_uc010lho.1_Splice_Site	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor							extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCTCTTTCAGACCTCAGTGT	0.547000													55	58					0	0	0.014410	0	0	
MUC17	140453	broad.mit.edu	37	7	100675338	100675338	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:100675338G>T	uc003uxp.1	+	3	694	c.641G>T	c.(640-642)GGA>GTA	p.G214V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	214	Extracellular (Potential).|1.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACAGTGAAGGAAGCACTCCA	0.473000													136	105					8.39346e-61	9.10836e-61	0.014410	1	0	
MUC17	140453	broad.mit.edu	37	7	100675869	100675869	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:100675869G>A	uc003uxp.1	+	3	1225	c.1172G>A	c.(1171-1173)GGA>GAA	p.G391E	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	391	Extracellular (Potential).|59 X approximate tandem repeats.|4.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTTAGTGAAGGAAGCACTCCA	0.463000													177	145					0	0	0.014410	0	0	
PIK3CG	5294	broad.mit.edu	37	7	106508581	106508581	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:106508581A>G	uc003vdv.3	+	2	660	c.575A>G	c.(574-576)GAC>GGC	p.D192G	PIK3CG_uc003vdu.2_Missense_Mutation_p.D192G|PIK3CG_uc003vdw.2_Missense_Mutation_p.D192G	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	192					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						GCCAGCCGCGACCCCAAGCTC	0.617000													22	34					0	0	0.014323	0	0	
PIK3CG	5294	broad.mit.edu	37	7	106508825	106508825	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:106508825C>T	uc003vdv.3	+	2	904	c.819C>T	c.(817-819)CGC>CGT	p.R273R	PIK3CG_uc003vdu.2_Silent_p.R273R|PIK3CG_uc003vdw.2_Silent_p.R273R	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	273					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						TTGTGCTGCGCGTCTGTGGCC	0.547000													16	43					0	0	0.004007	0	0	
GPR37	2861	broad.mit.edu	37	7	124404054	124404054	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:124404054T>C	uc003vli.2	-	1	1628	c.977A>G	c.(976-978)AAG>AGG	p.K326R		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	326	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CAGCAGCCACTTCTTGGTCAG	0.522000													38	131					0	0	0.023175	0	0	
GRM8	2918	broad.mit.edu	37	7	126409924	126409924	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:126409924A>C	uc003vlr.2	-	6	1663	c.1352T>G	c.(1351-1353)TTT>TGT	p.F451C	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.F451C|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Missense_Mutation_p.F172C	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	451	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CTTACCATTAAAATTTACAGC	0.398000										HNSCC(24;0.065)			18	45					0	0	0.006122	0	0	
PLXNA4	91584	broad.mit.edu	37	7	131859619	131859619	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:131859619A>C	uc003vra.3	-	21	4164	c.3935T>G	c.(3934-3936)ATT>AGT	p.I1312S		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1312	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CAGGAACGGAATCCCGGCTCC	0.577000													26	47					0	0	0.021523	0	0	
LRGUK	136332	broad.mit.edu	37	7	133948719	133948719	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:133948719C>T	uc003vrm.1	+	20	2486	c.2470C>T	c.(2470-2472)CGC>TGC	p.R824C		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	824							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CCCTCAGGGCCGCAGGTAGAC	0.527000													17	19					0	0	0.010504	0	0	
JHDM1D	80853	broad.mit.edu	37	7	139791694	139791694	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr7:139791694G>A	uc003vvm.2	-	19	2645	c.2641C>T	c.(2641-2643)CCA>TCA	p.P881S	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	881					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					TCACCAACTGGCCTTTCTGGG	0.507000													72	21					0	0	0.014410	0	0	
SOX7	83595	broad.mit.edu	37	8	10683705	10683705	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:10683705G>A	uc011kwz.1	-	5	384	c.351C>T	c.(349-351)TCC>TCT	p.S117S	PINX1_uc003wth.2_Silent_p.S117S|PINX1_uc003wti.2_Silent_p.S117S|MIR1322_hsa-mir-1322|MI0006653_5'Flank	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding	p.R117C(1)		breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		TGGAGATTTTGGACTTTTCCT	0.313000													3	11					0	0	0.004672	0	0	
ANK1	286	broad.mit.edu	37	8	41552795	41552795	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:41552795C>T	uc003xok.2	-	27	3099	c.3015G>A	c.(3013-3015)GAG>GAA	p.E1005E	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.E321E|ANK1_uc003xoi.2_Silent_p.E1005E|ANK1_uc003xoj.2_Silent_p.E1005E|ANK1_uc003xol.2_Silent_p.E1005E|ANK1_uc003xom.2_Silent_p.E1046E	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1005	ZU5.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GAACCACGAGCTCGCGGTCTC	0.597000													49	44					0	0	0.014410	0	0	
PRKDC	5591	broad.mit.edu	37	8	48733370	48733370	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:48733370G>A	uc003xqi.2	-	67	9303	c.9246C>T	c.(9244-9246)TAC>TAT	p.Y3082Y	PRKDC_uc003xqj.2_Silent_p.Y3082Y|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	3082	KIP-binding.|FAT.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				GCTCTTGACTGTAATGAAGCT	0.453000								NHEJ					8	29					0	0	0.003080	0	0	
PCMTD1	115294	broad.mit.edu	37	8	52733168	52733168	+	Missense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:52733168G>T	uc003xqx.3	-	6	1158	c.817C>A	c.(817-819)CCA>ACA	p.P273T	PCMTD1_uc011ldm.1_Missense_Mutation_p.P143T|PCMTD1_uc003xqw.3_Missense_Mutation_p.P273T|PCMTD1_uc011ldn.1_Missense_Mutation_p.P85T|PCMTD1_uc010lya.2_Missense_Mutation_p.P197T	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	273						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				CTTTTGGGTGGAGCCCTTTGA	0.393000													11	194					9.7654e-05	9.88029e-05	0.007413	1	0	
CYP7B1	9420	broad.mit.edu	37	8	65527645	65527645	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:65527645T>G	uc003xvj.2	-	4	1199	c.995A>C	c.(994-996)AAG>ACG	p.K332T		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	332					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AGACCCTTTCTTTTGACCTGT	0.443000													13	72					0	0	0.016723	0	0	
EYA1	2138	broad.mit.edu	37	8	72184108	72184108	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:72184108G>T	uc003xys.3	-	9	1138	c.851C>A	c.(850-852)TCA>TAA	p.S284*	EYA1_uc003xyr.3_Nonsense_Mutation_p.S279*|EYA1_uc003xyt.3_Nonsense_Mutation_p.S251*|EYA1_uc010lzf.2_Nonsense_Mutation_p.S211*|EYA1_uc003xyu.2_Nonsense_Mutation_p.S284*|EYA1_uc011lfe.1_Nonsense_Mutation_p.S278*|EYA1_uc003xyv.2_Nonsense_Mutation_p.S162*	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	284					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			AATGGGTGTTGATGGGCTGTG	0.448000													79	281					2.56221e-42	2.7717e-42	0.014410	1	0	
TRPA1	8989	broad.mit.edu	37	8	72970017	72970017	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:72970017C>T	uc003xza.2	-	9	1203	c.1028G>A	c.(1027-1029)CGC>CAC	p.R343H		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	343	Cytoplasmic (Potential).|ANK 9.					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	AAGTGGAGAGCGTCCTTCAGA	0.343000													34	51					0	0	0.017118	0	0	
JPH1	56704	broad.mit.edu	37	8	75227106	75227106	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:75227106C>G	uc003yae.2	-	2	1169	c.1129G>C	c.(1129-1131)GCA>CCA	p.A377P	JPH1_uc003yaf.2_Missense_Mutation_p.A377P|JPH1_uc003yag.1_Missense_Mutation_p.A241P	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	377	Ala-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			CTTGAATTTGCTATTTCCACT	0.443000													68	101					0	0	0.014410	0	0	
LRRCC1	85444	broad.mit.edu	37	8	86041417	86041417	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:86041417G>A	uc003ycw.2	+	10	1583	c.1429G>A	c.(1429-1431)GAA>AAA	p.E477K	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Missense_Mutation_p.E178K|LRRCC1_uc003ycx.2_Missense_Mutation_p.E384K|LRRCC1_uc003ycy.2_Missense_Mutation_p.E457K	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	477	Potential.				cell division|mitosis	centriole|nucleus					0						TAGGCTAAAGGAAATTATTTT	0.303000													36	132					0	0	0.021022	0	0	
RIMS2	9699	broad.mit.edu	37	8	104955056	104955056	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:104955056T>C	uc003yls.2	+	12	2178	c.1937T>C	c.(1936-1938)CTT>CCT	p.L646P	RIMS2_uc003ylp.2_Missense_Mutation_p.L868P|RIMS2_uc003ylw.2_Missense_Mutation_p.L660P|RIMS2_uc003ylq.2_Missense_Mutation_p.L660P|RIMS2_uc003ylr.2_Missense_Mutation_p.L707P|RIMS2_uc003ylt.2_Missense_Mutation_p.L253P	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	930					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGGTACAAACTTCAGACGCAT	0.413000										HNSCC(12;0.0054)			11	46					0	0	0.008291	0	0	
ZFPM2	23414	broad.mit.edu	37	8	106813708	106813708	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:106813708T>C	uc003ymd.2	+	8	1421	c.1398T>C	c.(1396-1398)TCT>TCC	p.S466S	ZFPM2_uc011lhs.1_Silent_p.S197S	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	466					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAAGCTTTTCTTACACAAAAA	0.458000													20	89					0	0	0.007413	0	0	
PKHD1L1	93035	broad.mit.edu	37	8	110476639	110476639	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:110476639T>G	uc003yne.2	+	49	7682	c.7578T>G	c.(7576-7578)TTT>TTG	p.F2526L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2526	PbH1 1.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAGGAGCATTTTTTATAGAAG	0.388000										HNSCC(38;0.096)			19	19					0	0	0.006122	0	0	
CSMD3	114788	broad.mit.edu	37	8	113237068	113237068	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:113237068C>T	uc003ynu.2	-	71	11215	c.11056G>A	c.(11056-11058)GCA>ACA	p.A3686T	CSMD3_uc003yns.2_Missense_Mutation_p.A2888T|CSMD3_uc003ynt.2_Missense_Mutation_p.A3646T|CSMD3_uc011lhx.1_Missense_Mutation_p.A3517T	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3686	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACTGACTTTGCGTTGGTGTCA	0.443000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			80	117					0	0	0.014410	0	0	
CSMD3	114788	broad.mit.edu	37	8	113256779	113256779	+	Missense_Mutation	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:113256779T>A	uc003ynu.2	-	65	10405	c.10246A>T	c.(10246-10248)ACT>TCT	p.T3416S	CSMD3_uc003yns.2_Missense_Mutation_p.T2618S|CSMD3_uc003ynt.2_Missense_Mutation_p.T3376S|CSMD3_uc011lhx.1_Missense_Mutation_p.T3247S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3416	Extracellular (Potential).|Sushi 28.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGAGCAGGAGTTTCTGGCTGT	0.388000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			26	56					0	0	0.006320	0	0	
ZFAT	57623	broad.mit.edu	37	8	135521911	135521911	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:135521911A>G	uc003yup.2	-	15	3618	c.3443T>C	c.(3442-3444)CTT>CCT	p.L1148P	ZFAT_uc011ljj.1_Missense_Mutation_p.L267P|ZFAT_uc003yun.2_Missense_Mutation_p.L1136P|ZFAT_uc003yuo.2_Missense_Mutation_p.L1136P|ZFAT_uc010meh.2_Intron|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.L1136P|ZFAT_uc010mej.2_Missense_Mutation_p.L1086P	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	1148					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			CACCGAGGCAAGGGCAGTGGC	0.577000													23	74					0	0	0.014323	0	0	
FAM135B	51059	broad.mit.edu	37	8	139164740	139164740	+	Missense_Mutation	SNP	C	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:139164740C>A	uc003yuy.2	-	13	2149	c.1978G>T	c.(1978-1980)GAC>TAC	p.D660Y	FAM135B_uc003yux.2_Missense_Mutation_p.D561Y|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.D222Y|FAM135B_uc003yvb.2_Missense_Mutation_p.D222Y	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	660										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GTGTGAGAGTCCTTTAGGGAA	0.493000										HNSCC(54;0.14)			28	78					4.87955e-14	5.13323e-14	0.005443	1	0	
BAI1	575	broad.mit.edu	37	8	143569806	143569806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr8:143569806G>A	uc003ywm.2	+	13	2573	c.2390G>A	c.(2389-2391)TGG>TAG	p.W797*		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	797	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					ACGGGTGACTGGGCCAAGGTG	0.637000													21	60					0	0	0.010504	0	0	
SPAG8	26206	broad.mit.edu	37	9	35811809	35811809	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:35811809C>T	uc003zye.2	-	2	349	c.234G>A	c.(232-234)GCG>GCA	p.A78A	SPAG8_uc003zyf.2_5'UTR|SPAG8_uc003zyg.2_Silent_p.A78A	NM_172312	NP_758516	Q99932	SPAG8_HUMAN	sperm associated antigen 8 isoform 2	78						acrosomal vesicle|membrane				ovary(1)	1	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			CAGAACAGGGCGCTGGGGTCT	0.418000													33	66					0	0	0.010818	0	0	
HRCT1	646962	broad.mit.edu	37	9	35906559	35906559	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:35906559A>C	uc003zyr.1	+	1	371	c.275A>C	c.(274-276)CAC>CCC	p.H92P	LOC158376_uc003zys.1_5'Flank	NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	92	His-rich.					integral to membrane					0						caccaccaccacccccgccac	0.393000													10	14					0	0	0.008871	0	0	
TRPM6	140803	broad.mit.edu	37	9	77454993	77454993	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:77454993A>C	uc004ajl.1	-	5	729	c.491T>G	c.(490-492)GTT>GGT	p.V164G	TRPM6_uc004ajk.1_Missense_Mutation_p.V159G|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.V164G|TRPM6_uc010mpd.1_Missense_Mutation_p.V164G|TRPM6_uc010mpe.1_Missense_Mutation_p.V164G|TRPM6_uc004ajn.1_Missense_Mutation_p.V164G	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	164	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TGCAGCTTTAACCAAACCTTG	0.348000													43	54					0	0	0.013114	0	0	
AGTPBP1	23287	broad.mit.edu	37	9	88203282	88203282	+	Missense_Mutation	SNP	T	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:88203282T>G	uc011ltd.1	-	20	2867	c.2834A>C	c.(2833-2835)CAG>CCG	p.Q945P	AGTPBP1_uc004aod.3_Missense_Mutation_p.Q571P|AGTPBP1_uc011ltc.1_Intron|AGTPBP1_uc010mqc.2_Missense_Mutation_p.Q905P|AGTPBP1_uc011lte.1_Missense_Mutation_p.Q957P	NM_015239	NP_056054	Q9UPW5	CBPC1_HUMAN	ATP/GTP binding protein 1	945					C-terminal protein deglutamylation|cerebellar Purkinje cell differentiation|eye photoreceptor cell differentiation|mitochondrion organization|neuromuscular process|olfactory bulb development|protein side chain deglutamylation|proteolysis	cytosol|mitochondrion|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(4)|large_intestine(2)|skin(1)	7						TCGTAAGCTCTGAGCAGTGGG	0.368000													12	43					0	0	0.010729	0	0	
S1PR3	1903	broad.mit.edu	37	9	91616715	91616715	+	Silent	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:91616715C>T	uc004aqe.2	+	2	996	c.600C>T	c.(598-600)TGC>TGT	p.C200C		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	200	Helical; Name=5; (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						TTGCCTTCTGCATCAGCATCT	0.572000											OREG0019291	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	80					0	0	0.008871	0	0	
IPPK	64768	broad.mit.edu	37	9	95400381	95400381	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:95400381G>A	uc004asl.1	-	9	1095	c.818C>T	c.(817-819)TCG>TTG	p.S273L	IPPK_uc004ask.1_5'Flank	NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	273					inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						GCCCTTGTCCGAGCCACTCAG	0.662000													6	23					0	0	0.021553	0	0	
ABCA1	19	broad.mit.edu	37	9	107645431	107645431	+	Missense_Mutation	SNP	G	A	A	rs141348278		TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:107645431G>A	uc004bcl.2	-	5	623	c.310C>T	c.(310-312)CGC>TGC	p.R104C	ABCA1_uc004bcm.2_Missense_Mutation_p.R44C	NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	104	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GAGAACAGGCGAGCCACACTG	0.483000													42	42					0	0	0.009718	0	0	
PAPPA	5069	broad.mit.edu	37	9	118949686	118949686	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:118949686A>C	uc004bjn.2	+	2	1050	c.669A>C	c.(667-669)CAA>CAC	p.Q223H	PAPPA_uc011lxp.1_Missense_Mutation_p.Q16H|PAPPA_uc011lxq.1_Missense_Mutation_p.Q16H	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	223					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTGGGGAACAAGTGGGTGGCA	0.557000													13	55					0	0	0.013537	0	0	
ASTN2	23245	broad.mit.edu	37	9	119903754	119903754	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:119903754G>A	uc004bjs.1	-	4	1120	c.1019C>T	c.(1018-1020)GCA>GTA	p.A340V	ASTN2_uc004bjr.1_Missense_Mutation_p.A340V|ASTN2_uc004bjt.1_Intron	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	340	Cytoplasmic (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CGCCTCAGCTGCTGCTATAAG	0.587000													32	18					0	0	0.012213	0	0	
NUP214	8021	broad.mit.edu	37	9	134015972	134015972	+	Missense_Mutation	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:134015972T>C	uc004cag.2	+	11	1280	c.1169T>C	c.(1168-1170)ATG>ACG	p.M390T	NUP214_uc004cah.2_Missense_Mutation_p.M390T|NUP214_uc004caf.1_Missense_Mutation_p.M390T	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	390					carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CCAGTTCTCATGTTACTTTCA	0.373000			T	DEK|SET|ABL1	AML|T-ALL								121	74					0	0	0.014410	0	0	
C9orf98	158067	broad.mit.edu	37	9	135742311	135742311	+	Missense_Mutation	SNP	C	T	T	rs115599655	by1000genomes	TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:135742311C>T	uc004cbu.1	-	3	755	c.199G>A	c.(199-201)GCC>ACC	p.A67T	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_5'UTR	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	67						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		TTCCCTGAGGCGGGTGGACCT	0.458000													76	41					0	0	0.014410	0	0	
GTF3C5	9328	broad.mit.edu	37	9	135926199	135926199	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr9:135926199G>A	uc004cci.3	+	4	939	c.602G>A	c.(601-603)GGT>GAT	p.G201D	GTF3C5_uc010mzz.2_Missense_Mutation_p.G76D|GTF3C5_uc004ccj.3_Missense_Mutation_p.G201D	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	201						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		CCCATCTCAGGTGAGAATCTG	0.607000													21	110					0	0	0.018920	0	0	
DMD	1756	broad.mit.edu	37	X	32490353	32490353	+	Silent	SNP	T	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:32490353T>C	uc004dda.1	-	22	3121	c.2877A>G	c.(2875-2877)GAA>GAG	p.E959E	DMD_uc004dcz.2_Silent_p.E836E|DMD_uc004dcy.1_Silent_p.E955E|DMD_uc004ddb.1_Silent_p.E951E|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	959	Spectrin 6.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AGAGTTTGGTTTCTGACTGCT	0.433000													32	36					0	0	0.008361	0	0	
TIMM17B	10245	broad.mit.edu	37	X	48754135	48754135	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:48754135C>T	uc004dlc.1	-	3	182	c.33G>A	c.(31-33)TGG>TGA	p.W11*	PQBP1_uc004dle.2_5'Flank|PQBP1_uc004dlf.2_5'Flank|PQBP1_uc004dlg.2_5'Flank|PQBP1_uc004dld.2_5'Flank|PQBP1_uc004dlh.2_5'Flank|PQBP1_uc004dli.2_5'Flank|PQBP1_uc004dlj.1_5'Flank|PQBP1_uc004dln.2_5'Flank|PQBP1_uc010nih.2_5'Flank|PQBP1_uc010nii.2_5'Flank|PQBP1_uc004dlk.2_5'Flank|PQBP1_uc004dll.2_5'Flank|PQBP1_uc004dlm.2_5'Flank|PQBP1_uc010nij.2_5'Flank|TIMM17B_uc004dla.1_Nonsense_Mutation_p.W11*|TIMM17B_uc004dlb.1_5'UTR	NM_005834	NP_005825	O60830	TI17B_HUMAN	translocase of inner mitochondrial membrane 17	11					protein targeting to mitochondrion	integral to membrane|microtubule cytoskeleton|mitochondrial inner membrane presequence translocase complex	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						CCACAATTCGCCATGGGCTGC	0.557000													16	22					0	0	0.003163	0	0	
HUWE1	10075	broad.mit.edu	37	X	53610583	53610583	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:53610583G>A	uc004dsp.2	-	42	5857	c.5455C>T	c.(5455-5457)CTG>TTG	p.L1819L	HUWE1_uc004dsn.2_Silent_p.L644L	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1819					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						AGGGTGACCAGGGGAGTAAAC	0.468000													32	19					0	0	0.010818	0	0	
USP51	158880	broad.mit.edu	37	X	55513611	55513611	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:55513611A>C	uc004dun.1	-	2	1841	c.1762T>G	c.(1762-1764)TTA>GTA	p.L588V	USP51_uc011moo.1_Missense_Mutation_p.L292V	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	588					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						ACAATGGGTAATTTTTTCATT	0.433000													21	29					0	0	0.012319	0	0	
LPAR4	2846	broad.mit.edu	37	X	78011422	78011422	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:78011422A>C	uc010nme.2	+	2	1461	c.1056A>C	c.(1054-1056)GAA>GAC	p.E352D		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	352	Cytoplasmic (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						TTCAAGAGGAAGTGAGTGATC	0.403000													35	34					0	0	0.015359	0	0	
POU3F4	5456	broad.mit.edu	37	X	82763585	82763585	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:82763585C>T	uc004eeg.2	+	1	317	c.253C>T	c.(253-255)CGC>TGC	p.R85C		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	85					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAAGCCCGGGCGCGAAGACCT	0.682000													4	4					0	0	0.009096	0	0	
XKRX	402415	broad.mit.edu	37	X	100177864	100177864	+	Silent	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:100177864G>A	uc004egn.2	-	2	1127	c.522C>T	c.(520-522)ATC>ATT	p.I174I	XKRX_uc011mre.1_Intron	NM_212559	NP_997724	Q6PP77	XKR2_HUMAN	XK, Kell blood group complex subunit-related,	174	Helical; (Potential).					integral to membrane|plasma membrane				breast(1)	1						GGAAGGCTTGGATCTGTGACA	0.567000													31	47					0	0	0.010818	0	0	
COL4A5	1287	broad.mit.edu	37	X	107936061	107936061	+	Missense_Mutation	SNP	A	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:107936061A>G	uc004enz.1	+	49	4814	c.4612A>G	c.(4612-4614)AGA>GGA	p.R1538G	COL4A5_uc011mso.1_Missense_Mutation_p.R1535G|COL4A5_uc011msp.1_Missense_Mutation_p.R214G	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1532	Collagen IV NC1.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CTTTGCTTCAAGAAATGACTA	0.478000									Alport_syndrome_with_Diffuse_Leiomyomatosis				31	27					0	0	0.008361	0	0	
CT47B1	643311	broad.mit.edu	37	X	120009284	120009284	+	Missense_Mutation	SNP	C	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:120009284C>T	uc011muc.1	-	1	496	c.241G>A	c.(241-243)GCC>ACC	p.A81T		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	81											0						TCCTCCTCGGCGCTCCCGCCC	0.612000													23	22					0	0	0.012319	0	0	
DCAF12L2	340578	broad.mit.edu	37	X	125298575	125298575	+	Missense_Mutation	SNP	C	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:125298575C>G	uc004euk.1	-	1	1360	c.1333G>C	c.(1333-1335)GTG>CTG	p.V445L		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	445										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CCCCCAGCCACAAAGAGCTTC	0.552000													34	57					0	0	0.019004	0	0	
FAM45B	55855	broad.mit.edu	37	X	129629682	129629682	+	Missense_Mutation	SNP	G	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:129629682G>A	uc010nrh.2	+	1	768	c.550G>A	c.(550-552)GTG>ATG	p.V184M	uc004evu.2_Intron	NM_207009	NP_996892			hypothetical protein LOC404636											skin(1)	1				all cancers(201;0.0293)		GAAAAGAATTGTGGTGTATCA	0.502000													37	37					0	0	0.013114	0	0	
PASD1	139135	broad.mit.edu	37	X	150840247	150840247	+	Missense_Mutation	SNP	A	C	C			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:150840247A>C	uc004fev.3	+	13	1765	c.1433A>C	c.(1432-1434)AAC>ACC	p.N478T		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	478						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GTTGCCTTCAACCAGGTATGG	0.453000													23	16					0	0	0.012319	0	0	
Unknown	0	broad.mit.edu	37	X	155252868	155252868	+	Silent	SNP	T	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:155252868T>A	uc004fnw.1	+	6	1571	c.912T>A	c.(910-912)CCT>CCA	p.P304P	uc004fnx.3_Silent_p.P90P	NM_182905	NP_878908			WAS protein family homolog 1																		TAGCCGAGCCTCTCAAGGCAG	0.632000													9	7					0	0	0.006214	0	0	
KSR2	283455	broad.mit.edu	37	12	118198972	118198972	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr12:118198972delG	uc001two.2	-	4	798	c.743delC	c.(742-744)CCGfs	p.P248fs		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	277	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCTCATGGGCGGCGTGCCCGG	0.706													85	151	---	---	---	---						.
PSMC5	5705	broad.mit.edu	37	17	61907794	61907796	+	In_Frame_Del	DEL	AAG	-	-			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr17:61907794_61907796delAAG	uc002jcb.2	+	6	526_528	c.485_487delAAG	c.(484-489)AAAGAA>AAA	p.E163del	FTSJ3_uc002jca.2_5'Flank|PSMC5_uc010ddy.2_In_Frame_Del_p.E140del|PSMC5_uc010ddz.2_In_Frame_Del_p.E84del|PSMC5_uc002jcc.2_In_Frame_Del_p.E155del|PSMC5_uc002jcd.2_In_Frame_Del_p.E155del	NM_002805	NP_002796	P62195	PRS8_HUMAN	proteasome 26S ATPase subunit 5	163					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of programmed cell death|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|thyrotropin-releasing hormone receptor binding|transcription cofactor activity|transcription factor binding			large_intestine(1)	1						AAGGAGATCAAAGAAGTGATCGA	0.493													26	31	---	---	---	---						.
PIGN	23556	broad.mit.edu	37	18	59742019	59742021	+	In_Frame_Del	DEL	ATA	-	-			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr18:59742019_59742021delATA	uc002lii.3	-	30	3058_3060	c.2610_2612delTAT	c.(2608-2613)ATTATG>ATG	p.I870del	PIGN_uc002lij.3_In_Frame_Del_p.I870del	NM_176787	NP_789744	O95427	PIGN_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	870	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5		Colorectal(73;0.187)				TACCAAAGCCATAATGTCTGATA	0.315													19	10	---	---	---	---						.
KLF1	10661	broad.mit.edu	37	19	12996345	12996345	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr19:12996345delG	uc002mvo.2	-	2	762	c.699delC	c.(697-699)CCCfs	p.P233fs		NM_006563	NP_006554	Q13351	KLF1_HUMAN	erythroid Kruppel-like factor	233	Pro-rich.				erythrocyte differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0		Hepatocellular(1079;0.137)		GBM - Glioblastoma multiforme(1328;0.00016)|Lung(535;0.171)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGGAAGGAGGGGGACGTGG	0.687													2	4	---	---	---	---						.
APC	324	broad.mit.edu	37	5	112175951	112175952	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chr5:112175951_112175952insA	uc010jby.2	+	16	5040_5041	c.4660_4661insA	c.(4660-4662)GAAfs	p.E1554fs	APC_uc011cvt.1_Frame_Shift_Ins_p.E1536fs|APC_uc003kpz.3_Frame_Shift_Ins_p.E1554fs|APC_uc003kpy.3_Frame_Shift_Ins_p.E1554fs|APC_uc010jbz.2_Frame_Shift_Ins_p.E1271fs|APC_uc010jca.2_Frame_Shift_Ins_p.E854fs	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1554	Ser-rich.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.T1556fs*3(35)|p.E1554fs*5(2)|p.E1554*(2)|p.?(1)|p.T1556fs*9(1)|p.K1192fs*3(1)|p.?fs(1)|p.E1554fs*11(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GAAAGAGGCAGAAAAAACTATT	0.342		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			43	21	---	---	---	---						.
ATRX	546	broad.mit.edu	37	X	76937769	76937770	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:76937769_76937770insT	uc004ecp.3	-	9	3210_3211	c.2978_2979insA	c.(2977-2979)AAGfs	p.K993fs	ATRX_uc004ecq.3_Frame_Shift_Ins_p.K955fs|ATRX_uc004eco.3_Frame_Shift_Ins_p.K778fs|ATRX_uc004ecr.2_Frame_Shift_Ins_p.K925fs|ATRX_uc010nlx.1_Frame_Shift_Ins_p.K964fs|ATRX_uc010nly.1_Frame_Shift_Ins_p.K938fs	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	993					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CTGAAGGTTTCTTTTTTTCTTC	0.347			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						63	83	---	---	---	---						.
CYLC1	1538	broad.mit.edu	37	X	83129336	83129336	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:83129336delT	uc004eei.1	+	4	1641	c.1620delT	c.(1618-1620)GGTfs	p.G540fs	CYLC1_uc004eeh.1_Frame_Shift_Del_p.G539fs	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	540	8.|8 X approximate tandem repeats.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AAATCAAAGGTTCAGATACTG	0.373													17	29	---	---	---	---						.
DUSP9	1852	broad.mit.edu	37	X	152915673	152915674	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CD-8535-01A-11D-2340-08	TCGA-CD-8535-10A-01D-2341-08									Somatic	Phase_I	Capture				Illumina GAIIx	2bf27b50-c850-413f-8c3c-c70f47612721	10b5ccce-a8cf-45c5-bef4-4b452366c67e	g.chrX:152915673_152915674insG	uc004fhx.3	+	4	1272_1273	c.1068_1069insG	c.(1066-1071)AGTGGGfs	p.S356fs	DUSP9_uc004fhy.3_Frame_Shift_Ins_p.S356fs	NM_001395	NP_001386	Q99956	DUS9_HUMAN	dual specificity phosphatase 9	356_357	Tyrosine-protein phosphatase.				inactivation of MAPK activity|JNK cascade	cytosol|endoplasmic reticulum|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)	2	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGGGCAGTGGGGGGCAGGC	0.658													36	52	---	---	---	---						.
