Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTN4	81	genome.wustl.edu	37	19	39196735	39196735	+	Missense_Mutation	SNP	C	C	G	rs149027682	byCluster;byFrequency;by1000genomes	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	39196735	39196735	C	G	SNP	ACTN4	NM_004924.3	human	genbank	58_37c	+1	reviewed	missense	c.536	p.P179R	1.000	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
AGPAT1	10554	genome.wustl.edu	37	6	32138201	32138201	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	6	32138201	32138201	C	T	SNP	AGPAT1	NM_006411.2	human	genbank	58_37c	-1	reviewed	splice_site	c.510+1	e3+1	1.000	-	-	-	no_errors
ARHGAP36	0	genome.wustl.edu	37	X	130219619	130219619	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	X	130219619	130219619	C	A	SNP	ARHGAP36	NM_144967.3	human	genbank	58_37c	+1	validated	missense	c.1013	p.P338H	0.984	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ATP8B1	5205	genome.wustl.edu	37	18	55328529	55328529	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	18	55328529	55328529	C	A	SNP	ATP8B1	NM_005603.4	human	genbank	58_37c	-1	reviewed	missense	c.2584	p.A862S	1.000	superfamily_SSF56784,superfamily_SSF81665	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
C11orf9	745	genome.wustl.edu	37	11	61533179	61533179	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	11	61533179	61533179	C	T	SNP	C11orf9	NM_001127392.1	human	genbank	58_37c	+1	validated	silent	c.129	p.S43	0.870	NULL	HMMPfam_NDT80_PhoG,superfamily_p53-like transcription factors	-	no_errors
C20orf160	140706	genome.wustl.edu	37	20	30605793	30605793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	30605793	30605793	G	T	SNP	C20orf160	NM_080625.3	human	genbank	58_37c	+1	validated	missense	c.294	p.E98D	1.000	NULL	NULL	-	no_errors
C5orf25	375484	genome.wustl.edu	37	5	175717932	175717932	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	5	175717932	175717932	C	G	SNP	C5orf25	ENST00000420396	human	ensembl	58_37c	+1	known	missense	c.1348	p.L450V	0.656	NULL	NULL	-	no_errors
C9orf131	138724	genome.wustl.edu	37	9	35044467	35044467	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	9	35044467	35044467	C	A	SNP	C9orf131	NM_203299.2	human	genbank	58_37c	+1	validated	missense	c.1841	p.A614D	0.001	NULL	NULL	-	no_errors
CADM2	253559	genome.wustl.edu	37	3	85935421	85935421	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	85935421	85935421	C	G	SNP	CADM2	NM_153184.3	human	genbank	58_37c	+1	validated	missense	c.452	p.S151C	0.996	HMMPfam_C2-set_2,superfamily_SSF48726	HMMSmart_4.1m,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors
CBLB	868	genome.wustl.edu	37	3	105495384	105495384	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	105495384	105495384	C	T	SNP	CBLB	NM_170662.3	human	genbank	58_37c	-1	validated	missense	c.422	p.R141Q	1.000	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl)	HMMPfam_UBA,HMMSmart_SM00184,HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,HMMPfam_Cbl_N3,HMMSmart_SM00165,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_EF-hand,superfamily_SH2 domain,superfamily_RING/U-box	-	no_errors
CCDC30	0	genome.wustl.edu	37	1	43032078	43032078	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	43032078	43032078	C	T	SNP	CCDC30	NM_001080850.2	human	genbank	58_37c	+1	validated	nonsense	c.787	p.R263*	0.978	NULL	NULL	-	no_errors
CHD6	84181	genome.wustl.edu	37	20	40161841	40161841	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	40161841	40161841	C	A	SNP	CHD6	NM_032221.3	human	genbank	58_37c	-1	reviewed	missense	c.402	p.K134N	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CYP26B1	56603	genome.wustl.edu	37	2	72362468	72362468	+	Silent	SNP	G	G	A	rs145145054	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	72362468	72362468	G	A	SNP	CYP26B1	NM_019885.2	human	genbank	58_37c	-1	reviewed	silent	c.510	p.R170	0.008	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DAB2	1601	genome.wustl.edu	37	5	39377160	39377160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	5	39377160	39377160	C	T	SNP	DAB2	NM_001343.2	human	genbank	58_37c	-1	validated	missense	c.1729	p.A577T	0.003	NULL	PatternScan_PFKB_KINASES_1,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
DIP2C	22982	genome.wustl.edu	37	10	327200	327200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	10	327200	327200	C	T	SNP	DIP2C	NM_014974.2	human	genbank	58_37c	-1	reviewed	missense	c.4358	p.R1453Q	1.000	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
DKFZP434H168	0	genome.wustl.edu	37	16	56226638	56226639	+	RNA	INS	-	-	CA	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	16	56226638	56226639	-	CA	INS	DKFZP434H168	NR_026889.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.000:0.271	-	-	-	no_errors
DSG4	147409	genome.wustl.edu	37	18	28979503	28979503	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	18	28979503	28979503	T	A	SNP	DSG4	NM_001134453.1	human	genbank	58_37c	+1	reviewed	missense	c.1274	p.V425D	1.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
ENSG00000234797	0	genome.wustl.edu	37	15	60061282	60061282	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	15	60061282	60061282	C	T	SNP	LOC100130107	XM_001719310.2	human	genbank	58_37c	-1	model	5_prime_untranslated_region	c.-36	NULL	0.989	-	-	-	no_errors
FAM3C	10447	genome.wustl.edu	37	7	121011389	121011389	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	7	121011389	121011389	G	A	SNP	FAM3C	NM_001040020.1	human	genbank	58_37c	-1	reviewed	silent	c.237	p.N79	1.000	NULL	NULL	-	no_errors
FAM83C	128876	genome.wustl.edu	37	20	33875143	33875143	+	Missense_Mutation	SNP	C	C	T	rs150355812	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	33875143	33875143	C	T	SNP	FAM83C	NM_178468.4	human	genbank	58_37c	-1	validated	missense	c.1439	p.R480Q	0.003	NULL	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-	no_errors
FCAR	2204	genome.wustl.edu	37	19	55401036	55401036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	55401036	55401036	C	T	SNP	FCAR	NM_002000.2	human	genbank	58_37c	+1	reviewed	missense	c.671	p.T224M	0.000	NULL	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
GPR34	2857	genome.wustl.edu	37	X	41555293	41555293	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	X	41555293	41555293	T	A	SNP	GPR34	NM_001097579.1	human	genbank	58_37c	+1	validated	missense	c.407	p.M136K	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
HOXA2	3199	genome.wustl.edu	37	7	27140422	27140422	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	7	27140422	27140422	C	T	SNP	HOXA2	NM_006735.3	human	genbank	58_37c	-1	reviewed	missense	c.1054	p.V352I	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ANTENNAPEDIA,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
LRP1	4035	genome.wustl.edu	37	12	57573272	57573272	+	Silent	SNP	C	C	T	rs141892093	byFrequency	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	12	57573272	57573272	C	T	SNP	LRP1	NM_002332.2	human	genbank	58_37c	+1	reviewed	silent	c.4899	p.D1633	0.895	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
LRP12	29967	genome.wustl.edu	37	8	105503433	105503433	+	Missense_Mutation	SNP	G	G	A	rs147788045	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	8	105503433	105503433	G	A	SNP	LRP12	NM_013437.4	human	genbank	58_37c	-1	reviewed	missense	c.2048	p.T683M	0.944	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
LSM14A	26065	genome.wustl.edu	37	19	34699901	34699901	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	34699901	34699901	G	A	SNP	LSM14A	NM_001114093.1	human	genbank	58_37c	+1	validated	silent	c.483	p.A161	0.996	NULL	HMMPfam_DFDF,HMMPfam_FFD_TFG	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9070608	9070608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	9070608	9070608	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.16838	p.T5613I	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYO15A	51168	genome.wustl.edu	37	17	18044985	18044985	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	17	18044985	18044985	C	T	SNP	MYO15A	NM_016239.3	human	genbank	58_37c	+1	reviewed	silent	c.5550	p.A1850	0.984	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR10A4	283297	genome.wustl.edu	37	11	6898202	6898202	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	11	6898202	6898202	T	G	SNP	OR10A4	NM_207186.2	human	genbank	58_37c	+1	validated	missense	c.324	p.F108L	0.950	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PADI1	29943	genome.wustl.edu	37	1	17563838	17563838	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	17563838	17563838	T	C	SNP	PADI1	NM_013358.2	human	genbank	58_37c	+1	reviewed	missense	c.1343	p.V448A	0.998	HMMPfam_PAD,superfamily_Pentein	superfamily_Cupredoxins,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,superfamily_Pentein	-	no_errors
PCTK3	5129	genome.wustl.edu	37	1	205494290	205494290	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	205494290	205494290	G	T	SNP	PCTK3	ENST00000437052	human	ensembl	58_37c	+1	known	nonsense	c.484	p.G162*	1.000	NULL	NULL	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	178936095	178936095	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1637	p.Q546R	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
POLQ	10721	genome.wustl.edu	37	3	121151152	121151152	+	Nonstop_Mutation	SNP	T	T	G	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	121151152	121151152	T	G	SNP	POLQ	NM_199420.3	human	genbank	58_37c	-1	validated	nonstop	c.7772	p.*2591S	0.000	NULL	HMMPfam_DNA_pol_A,HMMSmart_SM00482,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,superfamily_Ribonuclease H-like,HMMSmart_SM00487,PatternScan_DNA_POLYMERASE_A,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_DNA/RNA polymerases	-	no_errors
PRDM2	7799	genome.wustl.edu	37	1	14106177	14106177	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	14106177	14106177	G	A	SNP	PRDM2	NM_012231.4	human	genbank	58_37c	+1	reviewed	silent	c.1887	p.L629	0.006	NULL	HMMPfam_SET,HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_SET domain	-	no_errors
PRKD2	25865	genome.wustl.edu	37	19	47193909	47193909	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	19	47193909	47193909	C	T	SNP	PRKD2	NM_001079880.1	human	genbank	58_37c	-1	reviewed	missense	c.1757	p.R586H	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
RCL1	10171	genome.wustl.edu	37	9	4841274	4841274	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	9	4841274	4841274	G	T	SNP	RCL1	NM_005772.3	human	genbank	58_37c	+1	validated	silent	c.627	p.V209	1.000	HMMPfam_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,HMMPfam_RTC_insert	HMMPfam_RTC,PatternScan_RTC,superfamily_RNA3apos_cycl/enolpyr_transf_A/B,HMMPfam_RTC_insert	-	no_errors
SGOL1	151648	genome.wustl.edu	37	3	20212538	20212538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	3	20212538	20212538	G	A	SNP	SGOL1	NM_001012410.2	human	genbank	58_37c	-1	provisional	missense	c.1469	p.A490V	0.023	HMMPfam_Shugoshin_C	HMMPfam_Shugoshin_C,HMMPfam_Shugoshin_N,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
SGSM3	27352	genome.wustl.edu	37	22	40804998	40804998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	22	40804998	40804998	G	A	SNP	SGSM3	NM_015705.4	human	genbank	58_37c	+1	validated	missense	c.1964	p.R655H	1.000	HMMPfam_RUN,HMMSmart_SM00593	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_RUN,HMMSmart_SM00593	-	no_errors
SLCO5A1	81796	genome.wustl.edu	37	8	70744079	70744079	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	8	70744079	70744079	C	-	DEL	SLCO5A1	NM_030958.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.830	p.G277fs	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
SLCO5A1	81796	genome.wustl.edu	37	8	70744434	70744434	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	8	70744434	70744434	G	-	DEL	SLCO5A1	NM_030958.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.475	p.R159fs	1.000	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
STX16	8675	genome.wustl.edu	37	20	57242358	57242358	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	57242358	57242358	G	C	SNP	STX16	ENST00000361770	human	ensembl	58_37c	+1	known	splice_site	c.93+1	e2+1	0.006	-	-	-	no_errors
TMCC2	9911	genome.wustl.edu	37	1	205238746	205238746	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	205238746	205238746	G	C	SNP	TMCC2	NM_014858.3	human	genbank	58_37c	+1	validated	missense	c.1416	p.K472N	1.000	HMMPfam_Tmemb_cc2	HMMPfam_Tmemb_cc2	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	byCluster	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	17	7578406	7578406	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.524	p.R175H	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRO	7216	genome.wustl.edu	37	X	54955461	54955461	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	X	54955461	54955461	C	-	DEL	TRO	NM_001039705.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.2304	p.F769fs	0.934	NULL	HMMPfam_MAGE	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179597266	179597266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	179597266	179597266	C	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.12790	p.E4264K	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TUBE1	51175	genome.wustl.edu	37	6	112397208	112397208	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	6	112397208	112397208	T	C	SNP	TUBE1	NM_016262.4	human	genbank	58_37c	-1	reviewed	silent	c.744	p.K248	0.023	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
ZBTB39	9880	genome.wustl.edu	37	12	57397309	57397309	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	12	57397309	57397309	G	A	SNP	ZBTB39	NM_014830.1	human	genbank	58_37c	-1	provisional	missense	c.1393	p.H465Y	1.000	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFP64	55734	genome.wustl.edu	37	20	50769369	50769369	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	20	50769369	50769369	C	G	SNP	ZFP64	NM_018197.2	human	genbank	58_37c	-1	validated	missense	c.1362	p.K454N	0.043	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF326	284695	genome.wustl.edu	37	1	90470614	90470614	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	1	90470614	90470614	T	C	SNP	ZNF326	ENST00000394583	human	ensembl	58_37c	+1	known	silent	c.114	p.D38	1.000	NULL	NULL	-	no_errors
ZNF425	155054	genome.wustl.edu	37	7	148801816	148801816	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	7	148801816	148801816	C	T	SNP	ZNF425	NM_001001661.2	human	genbank	58_37c	-1	validated	missense	c.1147	p.E383K	0.875	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZSWIM2	151112	genome.wustl.edu	37	2	187693402	187693402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A0CJ-01A-21W-A019-09	TCGA-A7-A0CJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	c9f6a65e-ae20-410d-a397-34aef0818ff3	0d9abb69-24bb-473c-aec6-cfabee1d8ff5	2	187693402	187693402	G	A	SNP	ZSWIM2	NM_182521.2	human	genbank	58_37c	-1	validated	missense	c.1211	p.A404V	0.000	NULL	HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMSmart_RING,HMMPfam_SWIM,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
