Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC8	6833	genome.wustl.edu	37	11	17464360	17464360	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	17464360	17464360	C	T	SNP	ABCC8	NM_000352.3	human	genbank	58_37c	-1	reviewed	missense	c.1537	p.A513T	1.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCF1	23	genome.wustl.edu	37	6	30558114	30558114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	30558114	30558114	C	T	SNP	ABCF1	NM_001025091.1	human	genbank	58_37c	+1	reviewed	missense	c.2330	p.S777F	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACAD10	80724	genome.wustl.edu	37	12	112186135	112186135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	112186135	112186135	C	T	SNP	ACAD10	NM_001136538.1	human	genbank	58_37c	+1	reviewed	missense	c.2593	p.R865C	0.998	HMMPfam_Acyl-CoA_dh_M,superfamily_Acyl-CoA dehydrogenase NM domain-like	PatternScan_THIOL_PROTEASE_HIS,HMMPfam_APH,HMMPfam_Hydrolase,HMMPfam_Acyl-CoA_dh_1,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_N,PatternScan_PROTEIN_KINASE_TYR,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,superfamily_Acyl-CoA dehydrogenase NM domain-like,superfamily_Protein kinase-like (PK-like),superfamily_HAD-like	-	no_errors
ACSM2B	348158	genome.wustl.edu	37	16	20554293	20554293	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	16	20554293	20554293	C	T	SNP	ACSM2B	NM_001105069.1	human	genbank	58_37c	-1	validated	silent	c.1452	p.K484	0.998	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
AFAP1L1	134265	genome.wustl.edu	37	5	148702185	148702185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	148702185	148702185	G	A	SNP	AFAP1L1	NM_152406.2	human	genbank	58_37c	+1	validated	missense	c.1715	p.R572H	0.999	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
ALMS1	7840	genome.wustl.edu	37	2	73646388	73646388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	73646388	73646388	G	A	SNP	ALMS1	NM_015120.4	human	genbank	58_37c	+1	reviewed	silent	c.588	p.T196	0.009	NULL	NULL	-	no_errors
ANGPT4	51378	genome.wustl.edu	37	20	896809	896809	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	20	896809	896809	C	A	SNP	ANGPT4	NM_015985.2	human	genbank	58_37c	-1	reviewed	missense	c.49	p.A17S	0.163	NULL	HMMPfam_Fibrinogen_C,HMMSmart_FBG,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen_a/b/g_C	-	no_errors
ANKFY1	51479	genome.wustl.edu	37	17	4085564	4085564	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	4085564	4085564	C	G	SNP	ANKFY1	NM_016376.3	human	genbank	58_37c	-1	validated	missense	c.2036	p.G679A	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMSmart_BTB,HMMPfam_FYVE,HMMSmart_FYVE,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_FYVE_PHD_ZnF,HMMPfam_BTB	-	no_errors
ANKRD6	22881	genome.wustl.edu	37	6	90276733	90276733	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	90276733	90276733	G	A	SNP	ANKRD6	NM_014942.3	human	genbank	58_37c	+1	validated	missense	c.38	p.R13H	1.000	HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ATXN2L	11273	genome.wustl.edu	37	16	28843677	28843677	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	16	28843677	28843677	C	T	SNP	ATXN2L	NM_148414.1	human	genbank	58_37c	+1	reviewed	silent	c.1473	p.S491	0.977	NULL	HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors
C10orf119	79892	genome.wustl.edu	37	10	121602080	121602080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	10	121602080	121602080	G	C	SNP	C10orf119	NM_024834.2	human	genbank	58_37c	-1	validated	missense	c.1034	p.S345C	1.000	HMMPfam_DUF2044	HMMPfam_DUF2044	-	no_errors
C15orf42	90381	genome.wustl.edu	37	15	90126164	90126164	+	Missense_Mutation	SNP	G	G	A	rs150565858	by1000genomes	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	90126164	90126164	G	A	SNP	C15orf42	NM_152259.3	human	genbank	58_37c	+1	validated	missense	c.902	p.R301Q	0.002	NULL	NULL	-	no_errors
C6orf154	221424	genome.wustl.edu	37	6	43476519	43476519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	43476519	43476519	G	A	SNP	C6orf154	NM_001012974.1	human	genbank	58_37c	-1	predicted	missense	c.412	p.P138S	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
CABP5	56344	genome.wustl.edu	37	19	48542565	48542565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	19	48542565	48542565	C	T	SNP	CABP5	NM_019855.3	human	genbank	58_37c	-1	reviewed	missense	c.248	p.R83H	1.000	superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140953542	140953542	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	140953542	140953542	A	T	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	silent	c.4485	p.A1495	0.007	superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CCDC34	91057	genome.wustl.edu	37	11	27384585	27384585	+	Missense_Mutation	SNP	G	G	A	rs11549824	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	27384585	27384585	G	A	SNP	CCDC34	NM_030771.1	human	genbank	58_37c	-1	validated	missense	c.157	p.P53S	0.203	NULL	NULL	-	no_errors
CCDC83	220047	genome.wustl.edu	37	11	85593657	85593659	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	85593657	85593659	TGT	-	DEL	CCDC83	NM_173556.3	human	genbank	58_37c	+1	provisional	in_frame_del	c.282_284	p.V95in_frame_del	0.558:0.937:0.949	NULL	NULL	-	no_errors
CDHR1	0	genome.wustl.edu	37	10	85956341	85956341	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	10	85956341	85956341	A	G	SNP	CDHR1	NM_033100.2	human	genbank	58_37c	+1	reviewed	missense	c.232	p.R78G	0.979	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CDKN2AIP	55602	genome.wustl.edu	37	4	184367943	184367943	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	184367943	184367943	C	T	SNP	CDKN2AIP	NM_017632.2	human	genbank	58_37c	+1	provisional	missense	c.1106	p.S369L	0.679	NULL	superfamily_dsRNA-binding domain-like	-	no_errors
CEP135	9662	genome.wustl.edu	37	4	56819315	56819315	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	56819315	56819315	G	C	SNP	CEP135	NM_025009.3	human	genbank	58_37c	+1	validated	missense	c.178	p.E60Q	1.000	NULL	superfamily_Prefoldin	-	no_errors
CLCN3	1182	genome.wustl.edu	37	4	170610225	170610225	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	170610225	170610225	C	T	SNP	CLCN3	NM_173872.2	human	genbank	58_37c	+1	validated	silent	c.450	p.A150	0.929	superfamily_Cl-channel_core	HMMPfam_CBS,HMMSmart_CBS,HMMPfam_Voltage_CLC,superfamily_Cl-channel_core,superfamily_SSF54631	-	no_errors
COL6A3	1293	genome.wustl.edu	37	2	238280902	238280902	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	238280902	238280902	G	T	SNP	COL6A3	NM_004369.3	human	genbank	58_37c	-1	reviewed	missense	c.3758	p.T1253N	0.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,PatternScan_BPTI_KUNITZ_1,superfamily_BPTI-like,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_vWA-like	-	no_errors
CYLC1	1538	genome.wustl.edu	37	X	83128429	83128429	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	X	83128429	83128429	G	T	SNP	CYLC1	NM_021118.1	human	genbank	58_37c	+1	provisional	missense	c.713	p.C238F	0.000	NULL	NULL	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11687759	11687759	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	11687759	11687759	C	A	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	missense	c.7964	p.A2655D	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAJC13	23317	genome.wustl.edu	37	3	132193880	132193880	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	132193880	132193880	G	C	SNP	DNAJC13	NM_015268.3	human	genbank	58_37c	+1	validated	missense	c.2396	p.R799T	1.000	superfamily_ARM repeat	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_ARM repeat	-	no_errors
DSE	29940	genome.wustl.edu	37	6	116756906	116756906	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	116756906	116756906	T	C	SNP	DSE	NM_001080976.1	human	genbank	58_37c	+1	reviewed	silent	c.1275	p.R425	1.000	NULL	NULL	-	no_errors
DSEL	92126	genome.wustl.edu	37	18	65180116	65180116	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	18	65180116	65180116	T	G	SNP	DSEL	NM_032160.2	human	genbank	58_37c	-1	validated	missense	c.1760	p.N587T	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EML4	27436	genome.wustl.edu	37	2	42472824	42472824	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	42472824	42472824	A	T	SNP	EML4	NM_019063.3	human	genbank	58_37c	+1	validated	nonsense	c.205	p.K69*	1.000	NULL	PatternScan_HIS_ACID_PHOSPHAT_2,HMMSmart_SM00320,HMMPfam_HELP,superfamily_WD40 repeat-like,PatternScan_TRYPSIN_SER,PatternScan_EF_HAND_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000223128	0	genome.wustl.edu	37	20	21405383	21405384	+	RNA	INS	-	-	TCTCT	rs71330822	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	20	21405383	21405384	-	TCTCT	INS	NKX2-4	NM_033176.1	human	genbank	58_37c	-1	provisional	5_prime_flanking_region	c.-27346	NULL	0.002:0.002	-	-	-	no_errors
ENSG00000246718	0	genome.wustl.edu	37	11	17109365	17109366	+	RNA	INS	-	-	TT	rs72565110	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	11	17109365	17109366	-	TT	INS	PIK3C2A	NM_002645.2	human	genbank	58_37c	-1	validated	3_prime_untranslated_region	c.*1920	NULL	0.983:0.993	-	-	-	no_errors
FAM186B	84070	genome.wustl.edu	37	12	49993820	49993820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	49993820	49993820	C	T	SNP	FAM186B	NM_032130.2	human	genbank	58_37c	-1	validated	missense	c.1603	p.V535I	0.000	NULL	NULL	-	no_errors
FAM48B1	170067	genome.wustl.edu	37	X	24383411	24383411	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	X	24383411	24383411	G	T	SNP	FAM48B1	NM_001136234.1	human	genbank	58_37c	+1	inferred	missense	c.2534	p.R845I	0.000	NULL	NULL	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240601396	240601396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	240601396	240601396	C	T	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.4946	p.P1649L	1.000	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FRAS1	80144	genome.wustl.edu	37	4	79391188	79391188	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	79391188	79391188	C	A	SNP	FRAS1	ENST00000512123	human	ensembl	58_37c	+1	known	missense	c.1999	p.H667N	0.997	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FREM1	158326	genome.wustl.edu	37	9	14824844	14824844	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	14824844	14824844	C	A	SNP	FREM1	NM_144966.5	human	genbank	58_37c	-1	reviewed	missense	c.2028	p.R676S	1.000	NULL	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_Cadherin-like,superfamily_C-type lectin-like,PatternScan_SPASE_I_1	-	no_errors
HADH	3033	genome.wustl.edu	37	4	108948850	108948850	+	Missense_Mutation	SNP	C	C	T	rs140413151	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	4	108948850	108948850	C	T	SNP	HADH	NM_005327.4	human	genbank	58_37c	+1	reviewed	missense	c.643	p.P215S	1.000	PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_3HCDH,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
HRG	3273	genome.wustl.edu	37	3	186383974	186383974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	186383974	186383974	C	T	SNP	HRG	NM_000412.2	human	genbank	58_37c	+1	reviewed	missense	c.154	p.R52W	1.000	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin	HMMPfam_Cystatin,HMMSmart_SM00043,superfamily_Cystatin/monellin	-	no_errors
IL1R2	7850	genome.wustl.edu	37	2	102644698	102644698	+	Silent	SNP	G	G	A	rs2241081	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	102644698	102644698	G	A	SNP	IL1R2	NM_004633.3	human	genbank	58_37c	+1	reviewed	silent	c.1041	p.T347	0.485	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
ITPR2	3709	genome.wustl.edu	37	12	26647218	26647218	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	26647218	26647218	C	T	SNP	ITPR2	NM_002223.2	human	genbank	58_37c	-1	validated	silent	c.5238	p.Q1746	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
KCNJ3	3760	genome.wustl.edu	37	2	155555500	155555500	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	155555500	155555500	C	T	SNP	KCNJ3	NM_002239.2	human	genbank	58_37c	+1	reviewed	silent	c.213	p.L71	1.000	HMMPfam_IRK,superfamily_SSF81324	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
KCNK18	338567	genome.wustl.edu	37	10	118969045	118969045	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	10	118969045	118969045	G	C	SNP	KCNK18	NM_181840.1	human	genbank	58_37c	+1	provisional	missense	c.390	p.K130N	0.738	HMMPfam_Ion_trans_2,superfamily_SSF81324	HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KSR2	283455	genome.wustl.edu	37	12	117922315	117922315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	117922315	117922315	C	T	SNP	KSR2	NM_173598.4	human	genbank	58_37c	-1	validated	missense	c.2269	p.D757N	1.000	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,superfamily_Cysteine-rich domain	-	no_errors
LARP1	23367	genome.wustl.edu	37	5	154169889	154169890	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	154169889	154169890	CT	-	DEL	LARP1	NM_015315.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.210_211	p.S71fs	0.980:0.979	NULL	HMMSmart_DM15,HMMPfam_La,HMMSmart_LA,PatternScan_CYTOCHROME_B5_1,superfamily_SSF46785	-	no_errors
MCM3AP	8888	genome.wustl.edu	37	21	47703566	47703566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	21	47703566	47703566	C	T	SNP	MCM3AP	NM_003906.3	human	genbank	58_37c	-1	reviewed	missense	c.1406	p.R469H	1.000	superfamily_SSF54928	HMMPfam_SAC3_GANP,superfamily_SSF54928	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9061493	9061493	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	19	9061493	9061493	C	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.25953	p.G8651	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MYRIP	25924	genome.wustl.edu	37	3	40231954	40231954	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	40231954	40231954	G	C	SNP	MYRIP	NM_015460.2	human	genbank	58_37c	+1	validated	missense	c.1665	p.Q555H	1.000	NULL	HMMPfam_MOBP,superfamily_FYVE_PHD_ZnF	-	no_errors
NEK6	10783	genome.wustl.edu	37	9	127083782	127083782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	127083782	127083782	C	T	SNP	NEK6	NM_001145001.2	human	genbank	58_37c	+1	reviewed	silent	c.441	p.I147	0.906	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NUDT17	200035	genome.wustl.edu	37	1	145587481	145587481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	145587481	145587481	C	T	SNP	NUDT17	NM_001012758.2	human	genbank	58_37c	-1	validated	missense	c.599	p.R200Q	1.000	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX	-	no_errors
OR5H2	79310	genome.wustl.edu	37	3	98002278	98002278	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	98002278	98002278	T	G	SNP	OR5H2	NM_001005482.1	human	genbank	58_37c	+1	provisional	missense	c.547	p.Y183D	0.851	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PAPPA	5069	genome.wustl.edu	37	9	119144714	119144714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	119144714	119144714	G	A	SNP	PAPPA	NM_002581.3	human	genbank	58_37c	+1	reviewed	missense	c.4718	p.R1573Q	1.000	HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMSmart_LamGL,HMMPfam_Peptidase_M43,superfamily_ConA_like_lec_gl,superfamily_Complement_control_module,superfamily_SSF55486	-	no_errors
PCDHB14	56122	genome.wustl.edu	37	5	140604653	140604653	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	140604653	140604653	G	T	SNP	PCDHB14	NM_018934.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1576	p.E526*	0.000	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PDE4D	5144	genome.wustl.edu	37	5	58271593	58271593	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	58271593	58271593	G	A	SNP	PDE4D	NM_001104631.1	human	genbank	58_37c	-1	validated	missense	c.1904	p.T635M	1.000	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,superfamily_HD-domain/PDEase-like	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEKHH2	130271	genome.wustl.edu	37	2	43919673	43919673	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	43919673	43919673	A	G	SNP	PLEKHH2	NM_172069.3	human	genbank	58_37c	+1	validated	silent	c.207	p.K69	1.000	NULL	HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like	-	no_errors
PMS1	5378	genome.wustl.edu	37	2	190742124	190742124	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	2	190742124	190742124	T	G	SNP	PMS1	NM_000534.4	human	genbank	58_37c	+1	reviewed	missense	c.2761	p.F921V	1.000	NULL	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_HMG-box,HMMPfam_DNA_mis_repair,PatternScan_DNA_MISMATCH_REPAIR_1,superfamily_Ribosomal_S5_D2-typ_fold	-	no_errors
PPP1R3A	5506	genome.wustl.edu	37	7	113519206	113519206	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	113519206	113519206	A	G	SNP	PPP1R3A	NM_002711.3	human	genbank	58_37c	-1	reviewed	silent	c.1941	p.D647	0.000	NULL	HMMPfam_CBM_21	-	no_errors
PROCR	10544	genome.wustl.edu	37	20	33764038	33764038	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	20	33764038	33764038	C	A	SNP	PROCR	NM_006404.3	human	genbank	58_37c	+1	reviewed	missense	c.390	p.F130L	1.000	superfamily_MHC antigen-recognition domain	superfamily_MHC antigen-recognition domain	-	no_errors
PRTG	283659	genome.wustl.edu	37	15	55970187	55970187	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	55970187	55970187	C	A	SNP	PRTG	NM_173814.4	human	genbank	58_37c	-1	validated	missense	c.1189	p.A397S	1.000	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
PXDNL	137902	genome.wustl.edu	37	8	52370199	52370199	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	8	52370199	52370199	G	A	SNP	PXDNL	NM_144651.4	human	genbank	58_37c	-1	validated	nonsense	c.841	p.R281*	0.679	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
RAD54B	25788	genome.wustl.edu	37	8	95423537	95423537	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	8	95423537	95423537	G	A	SNP	RAD54B	NM_012415.2	human	genbank	58_37c	-1	reviewed	missense	c.311	p.S104L	0.000	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
RELN	5649	genome.wustl.edu	37	7	103141338	103141338	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	103141338	103141338	A	C	SNP	RELN	NM_005045.3	human	genbank	58_37c	-1	reviewed	missense	c.8521	p.S2841A	1.000	superfamily_Sialidase	HMMPfam_Reeler,HMMSmart_EGF,superfamily_Sialidase,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors
RFX4	5992	genome.wustl.edu	37	12	107048049	107048049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	12	107048049	107048049	C	T	SNP	RFX4	NM_213594.1	human	genbank	58_37c	+1	reviewed	missense	c.235	p.R79C	0.954	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
RGS7	6000	genome.wustl.edu	37	1	240990397	240990397	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	240990397	240990397	C	A	SNP	RGS7	NM_002924.4	human	genbank	58_37c	-1	validated	splice_site	c.684+1	e9+1	1.000	-	-	-	no_errors
RTP2	344892	genome.wustl.edu	37	3	187416666	187416666	+	Missense_Mutation	SNP	C	C	T	rs61748316	byFrequency	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	187416666	187416666	C	T	SNP	RTP2	NM_001004312.2	human	genbank	58_37c	-1	validated	missense	c.298	p.G100S	1.000	NULL	NULL	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237837413	237837413	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	237837413	237837413	C	A	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.8608	p.L2870M	1.000	HMMPfam_RyR	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SEC24A	10802	genome.wustl.edu	37	5	134041046	134041046	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	5	134041046	134041046	T	-	DEL	SEC24A	NM_021982.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.2470	p.C824fs	1.000	HMMPfam_Sec23_BS,superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,HMMPfam_Sec23_helical,superfamily_Helical domain of Sec23/24,HMMPfam_Gelsolin,HMMPfam_Sec23_BS,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24,superfamily_C-terminal gelsolin-like domain of Sec23/24	-	no_errors
SERF2	10169	genome.wustl.edu	37	15	44085898	44085898	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	44085898	44085898	C	G	SNP	SERF2	ENST00000409960	human	ensembl	58_37c	+1	known	missense	c.241	p.L81V	1.000	NULL	HMMPfam_4F5	-	no_errors
SGK269	79834	genome.wustl.edu	37	15	77425881	77425881	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	77425881	77425881	A	G	SNP	SGK269	NM_024776.2	human	genbank	58_37c	-1	validated	silent	c.3543	p.C1181	0.929	NULL	PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ST8SIA2	8128	genome.wustl.edu	37	15	92988112	92988112	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	92988112	92988112	C	T	SNP	ST8SIA2	NM_006011.3	human	genbank	58_37c	+1	reviewed	silent	c.795	p.N265	1.000	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
THEMIS	387357	genome.wustl.edu	37	6	128222041	128222041	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	6	128222041	128222041	C	G	SNP	THEMIS	NM_001010923.2	human	genbank	58_37c	-1	reviewed	missense	c.37	p.D13H	0.996	NULL	NULL	-	no_errors
TOPORS	10210	genome.wustl.edu	37	9	32544087	32544087	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	32544087	32544087	C	G	SNP	TOPORS	NM_005802.3	human	genbank	58_37c	-1	reviewed	missense	c.436	p.D146H	1.000	superfamily_RING/U-box	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579364	7579364	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	7579364	7579364	C	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.323	p.G108fs	0.910	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPR	7175	genome.wustl.edu	37	1	186303578	186303578	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	186303578	186303578	A	T	SNP	TPR	NM_003292.2	human	genbank	58_37c	-1	reviewed	silent	c.5061	p.A1687	0.997	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors
TSC1	7248	genome.wustl.edu	37	9	135771828	135771828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	135771828	135771828	G	A	SNP	TSC1	NM_000368.4	human	genbank	58_37c	-1	reviewed	missense	c.3289	p.R1097C	1.000	NULL	HMMPfam_Hamartin	-	no_errors
TTC14	151613	genome.wustl.edu	37	3	180327846	180327846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	180327846	180327846	G	A	SNP	TTC14	NM_133462.3	human	genbank	58_37c	+1	validated	missense	c.1829	p.S610N	1.000	NULL	HMMPfam_TPR_1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TTC19	54902	genome.wustl.edu	37	17	15929879	15929881	+	In_Frame_Del	DEL	CTA	CTA	-	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	CTA	CTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	17	15929879	15929881	CTA	-	DEL	TTC19	NM_017775.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1220_1222	p.T409in_frame_del	1.000:0.814:0.997	superfamily_SSF48452	superfamily_SSF48452	-	no_errors
URB2	9816	genome.wustl.edu	37	1	229783409	229783409	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	1	229783409	229783409	C	G	SNP	URB2	NM_014777.2	human	genbank	58_37c	+1	provisional	silent	c.4059	p.V1353	0.982	HMMPfam_Urb2	HMMPfam_Urb2	-	no_errors
ZNF445	353274	genome.wustl.edu	37	3	44496857	44496857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	3	44496857	44496857	C	T	SNP	ZNF445	NM_181489.5	human	genbank	58_37c	-1	validated	missense	c.185	p.R62H	1.000	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF462	58499	genome.wustl.edu	37	9	109690582	109690582	+	Silent	SNP	C	C	T	rs141145292	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	9	109690582	109690582	C	T	SNP	ZNF462	NM_021224.4	human	genbank	58_37c	+1	validated	silent	c.4389	p.P1463	0.576	superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
ZNF498	221785	genome.wustl.edu	37	7	99227257	99227258	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	99227257	99227258	CA	-	DEL	ZNF498	NM_145115.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.1249_1250	p.H417fs	0.986:1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF498	221785	genome.wustl.edu	37	7	99227260	99227260	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	7	99227260	99227260	C	G	SNP	ZNF498	NM_145115.2	human	genbank	58_37c	+1	validated	missense	c.1252	p.L418V	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF609	23060	genome.wustl.edu	37	15	64915059	64915059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AJ-01A-11W-A019-09	TCGA-AN-A0AJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	97fbce82-0eed-4d70-9af2-57918a4ea8da	4450b82b-beee-4327-a851-3b7488a3273c	15	64915059	64915059	C	T	SNP	ZNF609	NM_015042.1	human	genbank	58_37c	+1	provisional	missense	c.781	p.P261S	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
