Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANAPC7	0	genome.wustl.edu	37	12	110834204	110834204	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	110834204	110834204	G	A	SNP	ANAPC7	NM_016238.2	human	genbank	58_37c	-1	reviewed	missense	c.257	p.S86F	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
ANKRD11	0	genome.wustl.edu	37	16	89350800	89350800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	16	89350800	89350800	G	A	SNP	ANKRD11	NM_013275.4	human	genbank	58_37c	-1	validated	missense	c.2150	p.S717L	0.023	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARHGAP11A	0	genome.wustl.edu	37	15	32908481	32908481	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	32908481	32908481	G	A	SNP	ARHGAP11A	NM_014783.3	human	genbank	58_37c	+1	validated	silent	c.69	p.V23	0.990	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
B3GALTL	0	genome.wustl.edu	37	13	31903672	31903672	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	13	31903672	31903672	C	T	SNP	B3GALTL	NM_194318.3	human	genbank	58_37c	+1	reviewed	missense	c.1364	p.S455F	0.946	HMMPfam_Fringe	PatternScan_ER_TARGET,HMMPfam_Fringe	-	no_errors
CD69	0	genome.wustl.edu	37	12	9907739	9907739	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	9907739	9907739	C	T	SNP	CD69	NM_001781.2	human	genbank	58_37c	-1	reviewed	silent	c.306	p.V102	0.000	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	-	no_errors
CDH1	0	genome.wustl.edu	37	16	68772254	68772254	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	16	68772254	68772254	G	T	SNP	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	nonsense	c.103	p.E35*	0.780	HMMPfam_Cadherin_pro,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CLK1	0	genome.wustl.edu	37	2	201726041	201726041	+	Missense_Mutation	SNP	A	A	C	rs111674898	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	2	201726041	201726041	A	C	SNP	CLK1	NM_004071.3	human	genbank	58_37c	-1	reviewed	missense	c.310	p.S104A	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
COL6A6	0	genome.wustl.edu	37	3	130290018	130290018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	3	130290018	130290018	G	A	SNP	COL6A6	NM_001102608.1	human	genbank	58_37c	+1	provisional	missense	c.2758	p.D920N	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
CSN2	0	genome.wustl.edu	37	4	70823234	70823234	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	4	70823234	70823234	G	A	SNP	CSN2	NM_001891.2	human	genbank	58_37c	-1	validated	silent	c.433	p.L145	0.000	HMMPfam_Casein	HMMPfam_Casein,PatternScan_CASEIN_ALPHA_BETA	-	no_errors
CTNNAL1	0	genome.wustl.edu	37	9	111741679	111741679	+	Missense_Mutation	SNP	C	C	T	rs142466437	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	9	111741679	111741679	C	T	SNP	CTNNAL1	NM_003798.2	human	genbank	58_37c	-1	provisional	missense	c.983	p.R328H	0.657	superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
CYYR1	0	genome.wustl.edu	37	21	27840937	27840937	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	21	27840937	27840937	G	A	SNP	CYYR1	NM_052954.2	human	genbank	58_37c	-1	validated	silent	c.348	p.Y116	0.029	NULL	NULL	-	no_errors
ENSG00000204733	0	genome.wustl.edu	37	17	41466002	41466003	+	In_Frame_Ins	INS	-	-	GAG	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	41466002	41466003	-	GAG	INS	ENSG00000204733	ENST00000377237	human	ensembl	58_37c	-1	known	in_frame_ins	c.127_126	p.42in_frame_insL	0.000:0.000	NULL	NULL	-	no_errors
ENSG00000204733	0	genome.wustl.edu	37	17	41466007	41466008	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	41466007	41466008	-	G	INS	ENSG00000204733	ENST00000377237	human	ensembl	58_37c	-1	known	frame_shift_ins	c.122_121	p.C41fs	0.000:0.000	NULL	NULL	-	no_errors
ENSG00000237909	0	genome.wustl.edu	37	7	65233170	65233170	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	7	65233170	65233170	G	A	SNP	ENSG00000237909	ENST00000418027	human	ensembl	58_37c	+1	known	missense	c.92	p.R31K	0.989	HMMPfam_DUF323	HMMPfam_DUF323	-	no_start_codon:no_stop_codon
ENSG00000248695	0	genome.wustl.edu	37	17	34236445	34236445	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	34236445	34236445	G	T	SNP	ENSG00000248695	ENST00000506920	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
EPPK1	0	genome.wustl.edu	37	8	144942413	144942413	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	8	144942413	144942413	T	C	SNP	EPPK1	NM_031308.1	human	genbank	58_37c	-1	validated	missense	c.5009	p.D1670G	0.988	HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	pseudogene
FGB	0	genome.wustl.edu	37	4	155490686	155490686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	4	155490686	155490686	G	A	SNP	FGB	NM_005141.4	human	genbank	58_37c	+1	reviewed	missense	c.979	p.D327N	1.000	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fib_beta	-	no_errors
GBX2	0	genome.wustl.edu	37	2	237074835	237074835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	2	237074835	237074835	C	T	SNP	GBX2	NM_001485.2	human	genbank	58_37c	-1	validated	missense	c.769	p.E257K	1.000	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
GOLGA6L6	0	genome.wustl.edu	37	15	20740459	20740461	+	In_Frame_Del	DEL	TCG	TCG	-	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	TCG	TCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	20740459	20740461	TCG	-	DEL	GOLGA6L6	NM_001145004.1	human	genbank	58_37c	-1	inferred	in_frame_del	c.1291_1289	p.AK430in_frame_delE	0.966:0.963:0.960	NULL	NULL	-	no_errors
IGHMBP2	0	genome.wustl.edu	37	11	68678993	68678993	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	11	68678993	68678993	C	T	SNP	IGHMBP2	NM_002180.2	human	genbank	58_37c	+1	reviewed	silent	c.633	p.I211	1.000	HMMSmart_SM00382,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00154,HMMPfam_R3H,HMMSmart_SM00393,HMMSmart_SM00382,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_R3H domain	-	no_errors
ISLR2	0	genome.wustl.edu	37	15	74425574	74425574	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	74425574	74425574	G	A	SNP	ISLR2	NM_001130136.1	human	genbank	58_37c	+1	validated	missense	c.479	p.R160H	0.994	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
ITGAD	0	genome.wustl.edu	37	16	31424208	31424208	+	Missense_Mutation	SNP	C	C	T	rs144853512	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	16	31424208	31424208	C	T	SNP	ITGAD	NM_005353.2	human	genbank	58_37c	+1	validated	missense	c.1757	p.A586V	0.975	HMMPfam_FG-GAP,HMMSmart_SM00191,superfamily_Integrin alpha N-terminal domain	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_vWA-like,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
KNTC1	0	genome.wustl.edu	37	12	123073362	123073365	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	123073362	123073365	AAGT	-	DEL	KNTC1	NM_014708.4	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.3998_3999	p.K1333fs	1.000:1.000	NULL	PatternScan_BZIP_BASIC,HMMPfam_Rod_C	-	no_errors
LOC100288765	0	genome.wustl.edu	37	9	69845804	69845804	+	Missense_Mutation	SNP	C	C	G	rs75336950	byFrequency	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	9	69845804	69845804	C	G	SNP	LOC100288765	XM_002342925.1	human	genbank	58_37c	+1	model	missense	c.133	p.L45V	0.857	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC100289317	0	genome.wustl.edu	37	22	45723962	45723962	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	22	45723962	45723962	G	T	SNP	LOC100289317	XM_002343782.1	human	genbank	58_37c	-1	model	missense	c.280	p.R94S	0.000	NULL	NULL	-	no_errors
LOC401218	0	genome.wustl.edu	37	5	172190202	172190202	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	5	172190202	172190202	C	T	SNP	LOC401218	XR_042344.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.981	-	-	-	pseudogene
LOC440577	0	genome.wustl.edu	37	1	27533907	27533909	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	27533907	27533909	GAT	-	DEL	LOC440577	XM_496355.5	human	genbank	58_37c	+1	model	in_frame_del	c.475_477	p.D162in_frame_del	0.985:0.981:0.977	HMMPfam_Nucleoplasmin	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
LOC653436	0	genome.wustl.edu	37	9	44076924	44076924	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	9	44076924	44076924	G	A	SNP	LOC653436	XR_042306.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
LPA	0	genome.wustl.edu	37	6	161056225	161056225	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	6	161056225	161056225	G	A	SNP	LPA	NM_005577.2	human	genbank	58_37c	-1	reviewed	silent	c.1005	p.D335	0.005	HMMSmart_SM00130,superfamily_Kringle-like	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LRRIQ1	0	genome.wustl.edu	37	12	85515540	85515540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	12	85515540	85515540	C	T	SNP	LRRIQ1	NM_001079910.1	human	genbank	58_37c	+1	validated	missense	c.3443	p.S1148L	0.002	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MTRR	0	genome.wustl.edu	37	5	7878145	7878145	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	5	7878145	7878145	A	C	SNP	MTRR	NM_024010.2	human	genbank	58_37c	+1	reviewed	missense	c.571	p.S191R	0.004	NULL	HMMPfam_NAD_binding_1,HMMPfam_FAD_binding_1,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
MX2	0	genome.wustl.edu	37	21	42770841	42770841	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	21	42770841	42770841	A	G	SNP	MX2	NM_002463.1	human	genbank	58_37c	+1	reviewed	silent	c.1167	p.L389	0.008	HMMPfam_Dynamin_M,superfamily_SSF52540	HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_DYNc,HMMPfam_GED,HMMSmart_GED,PatternScan_DYNAMIN,superfamily_SSF52540	-	no_errors
MYOCD	0	genome.wustl.edu	37	17	12655755	12655755	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	12655755	12655755	C	T	SNP	MYOCD	NM_153604.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1150	p.R384*	1.000	HMMPfam_SAP,HMMSmart_SM00513,superfamily_SAP domain	HMMPfam_SAP,HMMSmart_SM00513,HMMSmart_SM00707,superfamily_SAP domain	-	no_errors
OR14K1	0	genome.wustl.edu	37	1	247902751	247902751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	247902751	247902751	G	A	SNP	OR14K1	ENST00000283225	human	ensembl	58_37c	+1	known	missense	c.835	p.A279T	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCLO	0	genome.wustl.edu	37	7	82784867	82784867	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	7	82784867	82784867	G	A	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	nonsense	c.1090	p.Q364*	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PLA2G4A	0	genome.wustl.edu	37	1	186934718	186934718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	186934718	186934718	C	T	SNP	PLA2G4A	NM_024420.2	human	genbank	58_37c	+1	reviewed	missense	c.1757	p.P586L	1.000	HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like	HMMPfam_C2,HMMSmart_SM00239,PatternScan_SUBTILASE_ASP,HMMPfam_PLA2_B,HMMSmart_SM00022,PatternScan_PPASE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FabD/lysophospholipase-like	-	no_errors
PLEKHG2	0	genome.wustl.edu	37	19	39905706	39905706	+	Missense_Mutation	SNP	G	G	C	rs139923860	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	19	39905706	39905706	G	C	SNP	PLEKHG2	NM_022835.2	human	genbank	58_37c	+1	validated	missense	c.184	p.G62R	1.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
PTPN9	0	genome.wustl.edu	37	15	75815503	75815503	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	15	75815503	75815503	T	C	SNP	PTPN9	NM_002833.2	human	genbank	58_37c	-1	reviewed	silent	c.381	p.V127	0.817	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C,HMMPfam_CRAL_TRIO_N,superfamily_Sec14p_like_N,PatternScan_TYR_PHOSPHATASE_1,superfamily_SSF52799	-	no_errors
RBBP7	0	genome.wustl.edu	37	X	16871848	16871848	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	X	16871848	16871848	C	G	SNP	RBBP7	NM_002893.3	human	genbank	58_37c	-1	reviewed	missense	c.715	p.E239Q	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
RGPD8	0	genome.wustl.edu	37	2	113147740	113147740	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	2	113147740	113147740	C	T	SNP	RGPD8	ENST00000302558	human	ensembl	58_37c	-1	known	missense	c.2782	p.E928K	0.944	NULL	HMMPfam_Ran_BP1,HMMSmart_SM00160,HMMPfam_GRIP,HMMSmart_SM00755,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_PH domain-like	-	no_errors
RUNDC3A	0	genome.wustl.edu	37	17	42390802	42390802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	42390802	42390802	G	A	SNP	RUNDC3A	NM_001144825.1	human	genbank	58_37c	+1	validated	missense	c.389	p.R130Q	1.000	HMMPfam_RUN,HMMSmart_SM00593	HMMPfam_RUN,HMMSmart_SM00593	-	no_errors
SEC63	0	genome.wustl.edu	37	6	108218930	108218930	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	6	108218930	108218930	C	G	SNP	SEC63	NM_007214.4	human	genbank	58_37c	-1	reviewed	missense	c.1363	p.D455H	1.000	HMMPfam_Sec63,HMMSmart_SEC63	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,HMMPfam_Sec63,HMMSmart_SEC63,PatternScan_DNAJ_1	-	no_errors
SEMA6A	0	genome.wustl.edu	37	5	115782666	115782666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	5	115782666	115782666	G	A	SNP	SEMA6A	ENST00000515129	human	ensembl	58_37c	-1	known	missense	c.1280	p.T427M	0.979	NULL	HMMPfam_Sema,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SPRED3	0	genome.wustl.edu	37	19	38882864	38882866	+	In_Frame_Del	DEL	CCT	CCT	-	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	19	38882864	38882866	CCT	-	DEL	SPRED3	NM_001042522.1	human	genbank	58_37c	+1	validated	in_frame_del	c.359_361	p.S124in_frame_del	1.000:0.995:0.997	superfamily_SSF50729	HMMPfam_WH1,HMMPfam_Sprouty,superfamily_SSF50729	-	no_errors
SUV420H1	0	genome.wustl.edu	37	11	67941347	67941347	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	11	67941347	67941347	T	A	SNP	SUV420H1	NM_017635.3	human	genbank	58_37c	-1	reviewed	missense	c.577	p.S193C	1.000	HMMPfam_SET,superfamily_SET domain	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	-	no_errors
SYCE1	0	genome.wustl.edu	37	10	135373612	135373612	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	10	135373612	135373612	A	C	SNP	SYCE1	NM_001143764.1	human	genbank	58_37c	-1	validated	missense	c.119	p.V40G	1.000	NULL	NULL	-	no_errors
TDRD10	0	genome.wustl.edu	37	1	154493890	154493890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	154493890	154493890	G	A	SNP	TDRD10	NM_001098475.1	human	genbank	58_37c	+1	validated	missense	c.304	p.V102M	0.021	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_TUDOR,superfamily_RNA-binding domain RBD,superfamily_Tudor/PWWP/MBT	-	no_errors
TDRKH	0	genome.wustl.edu	37	1	151751327	151751327	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	151751327	151751327	G	A	SNP	TDRKH	NM_001083963.1	human	genbank	58_37c	-1	validated	silent	c.717	p.N239	0.000	superfamily_Eukaryotic type KH-domain (KH-domain type I)	HMMSmart_SM00333,HMMSmart_SM00322,HMMPfam_TUDOR,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_Tudor/PWWP/MBT	-	no_errors
TFDP2	0	genome.wustl.edu	37	3	141671811	141671811	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	3	141671811	141671811	A	G	SNP	TFDP2	NM_006286.4	human	genbank	58_37c	-1	reviewed	missense	c.919	p.S307P	1.000	NULL	HMMPfam_E2F_TDP,HMMPfam_DP,superfamily_SSF46785	-	no_errors
TIPRL	0	genome.wustl.edu	37	1	168165856	168165856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	1	168165856	168165856	G	A	SNP	TIPRL	NM_152902.3	human	genbank	58_37c	+1	validated	missense	c.588	p.M196I	1.000	HMMPfam_TIP41	HMMPfam_TIP41	-	no_errors
TNMD	0	genome.wustl.edu	37	X	99849000	99849000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	X	99849000	99849000	G	A	SNP	TNMD	NM_022144.2	human	genbank	58_37c	+1	reviewed	missense	c.289	p.D97N	1.000	HMMPfam_BRICHOS	HMMPfam_BRICHOS	-	no_errors
UBE2O	0	genome.wustl.edu	37	17	74401326	74401326	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	17	74401326	74401326	G	A	SNP	UBE2O	NM_022066.3	human	genbank	58_37c	-1	validated	silent	c.549	p.I183	1.000	NULL	HMMPfam_UQ_con,HMMSmart_UBCc,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBQ-conjugat/RWD-like	-	no_errors
WDR44	0	genome.wustl.edu	37	X	117577583	117577583	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	X	117577583	117577583	C	G	SNP	WDR44	ENST00000371848	human	ensembl	58_37c	+1	known	missense	c.2143	p.L715V	0.424	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
WHSC1L1	0	genome.wustl.edu	37	8	38146045	38146045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A1KS-01A-11D-A13L-09	TCGA-AO-A1KS-10A-01W-A14R-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21074661-4b0f-4adc-b406-5801688a3ae9	460a9133-a189-42d2-acf0-ae61ca265d76	8	38146045	38146045	C	T	SNP	WHSC1L1	NM_023034.1	human	genbank	58_37c	-1	reviewed	missense	c.3461	p.R1154Q	0.995	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
