Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ALDH1A1	216	genome.wustl.edu	37	9	75516163	75516163	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	9	75516163	75516163	G	C	SNP	ALDH1A1	NM_000689.3	human	genbank	58_37c	-1	reviewed	silent	c.1467	p.V489	1.000	HMMPfam_Aldedh,superfamily_ALDH-like	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ANKRD52	0	genome.wustl.edu	37	12	56646569	56646569	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	12	56646569	56646569	G	A	SNP	ANKRD52	NM_173595.3	human	genbank	58_37c	-1	validated	silent	c.1296	p.S432	0.998	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
APOB48R	55911	genome.wustl.edu	37	16	28508338	28508338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	16	28508338	28508338	C	T	SNP	APOB48R	NM_018690.2	human	genbank	58_37c	+1	reviewed	missense	c.1949	p.A650V	0.006	NULL	NULL	-	no_errors
C14orf38	729665	genome.wustl.edu	37	14	60004781	60004781	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	14	60004781	60004781	T	C	SNP	C14orf38	ENST00000281581	human	ensembl	58_37c	-1	known	missense	c.1583	p.N528S	0.000	NULL	NULL	-	no_errors
C19orf39	126074	genome.wustl.edu	37	19	11485555	11485559	+	Frame_Shift_Del	DEL	CAAAG	CAAAG	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	CAAAG	CAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	11485555	11485559	CAAAG	-	DEL	C19orf39	NM_175871.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.136_140	p.Q46fs	0.995:1.000:1.000:1.000:1.000	superfamily_SSF52540	superfamily_SSF52540	-	no_errors
C6orf204	387119	genome.wustl.edu	37	6	118953701	118953701	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	6	118953701	118953701	A	G	SNP	C6orf204	NM_001042475.2	human	genbank	58_37c	-1	validated	silent	c.147	p.H49	0.979	NULL	NULL	-	no_errors
C8orf79	286032	genome.wustl.edu	37	8	12878609	12878609	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	8	12878609	12878609	G	A	SNP	C8orf79	NM_020844.2	human	genbank	58_37c	+1	validated	missense	c.421	p.V141I	0.995	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
CACNA2D2	9254	genome.wustl.edu	37	3	50404289	50404289	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	3	50404289	50404289	G	C	SNP	CACNA2D2	NM_001005505.1	human	genbank	58_37c	-1	reviewed	missense	c.2562	p.N854K	1.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,HMMPfam_VGCC_alpha2,superfamily_vWA-like	-	no_errors
CALR	811	genome.wustl.edu	37	19	13054630	13054630	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	13054630	13054630	A	G	SNP	CALR	NM_004343.3	human	genbank	58_37c	+1	reviewed	missense	c.1157	p.E386G	0.997	NULL	HMMPfam_Calreticulin,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,PatternScan_CALRETICULIN_REPEAT	-	no_errors
CSH2	1443	genome.wustl.edu	37	17	61950968	61950968	+	Missense_Mutation	SNP	C	C	T	rs1130686	byCluster	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	17	61950968	61950968	C	T	SNP	CSH2	NM_020991.3	human	genbank	58_37c	-1	reviewed	missense	c.7	p.A3T	0.998	NULL	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_1,PatternScan_SOMATOTROPIN_2	-	no_errors
CYP2A13	1553	genome.wustl.edu	37	19	41596335	41596335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	41596335	41596335	C	T	SNP	CYP2A13	NM_000766.3	human	genbank	58_37c	+1	reviewed	silent	c.520	p.L174	0.641	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
CYP3A4	1576	genome.wustl.edu	37	7	99367407	99367407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	99367407	99367407	G	A	SNP	CYP3A4	NM_017460.3	human	genbank	58_37c	-1	reviewed	missense	c.505	p.P169S	0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DNAH10	196385	genome.wustl.edu	37	12	124265682	124265682	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	12	124265682	124265682	T	A	SNP	DNAH10	NM_207437.3	human	genbank	58_37c	+1	validated	missense	c.494	p.V165D	0.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000210196	0	genome.wustl.edu	37	MT	15961	15961	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	MT	15961	15961	G	A	SNP	ENSG00000210196	ENST00000387461	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	1081	1081	+	RNA	SNP	T	T	C	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	MT	1081	1081	T	C	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000245932	0	genome.wustl.edu	37	19	53302908	53302908	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	53302908	53302908	C	T	SNP	ENSG00000245932	ENST00000500436	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENTPD7	57089	genome.wustl.edu	37	10	101462392	101462392	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	101462392	101462392	G	-	DEL	ENTPD7	NM_020354.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.1545	p.G516fs	1.000	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
FLNC	2318	genome.wustl.edu	37	7	128475401	128475401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	128475401	128475401	G	A	SNP	FLNC	NM_001458.4	human	genbank	58_37c	+1	reviewed	missense	c.374	p.G125E	1.000	PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	HMMSmart_SM00557,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,superfamily_E set domains,superfamily_Calponin-homology domain CH-domain,HMMPfam_Filamin	-	no_errors
GABRA6	2559	genome.wustl.edu	37	5	161128618	161128618	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	5	161128618	161128618	C	A	SNP	GABRA6	NM_000811.2	human	genbank	58_37c	+1	reviewed	missense	c.1201	p.P401T	0.042	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GAGE10	643832	genome.wustl.edu	37	X	49173740	49173740	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	49173740	49173740	C	G	SNP	GAGE10	NM_001098413.2	human	genbank	58_37c	+1	provisional	missense	c.301	p.P101A	0.000	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
GAPVD1	26130	genome.wustl.edu	37	9	128061273	128061273	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	9	128061273	128061273	C	A	SNP	GAPVD1	NM_015635.2	human	genbank	58_37c	+1	validated	missense	c.73	p.Q25K	1.000	NULL	HMMPfam_RasGAP,HMMPfam_VPS9,superfamily_Rho_GAP,HMMSmart_VPS9,superfamily_SSF109993	-	no_errors
HTR2B	3357	genome.wustl.edu	37	2	231973672	231973672	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	2	231973672	231973672	A	-	DEL	HTR2B	NM_000867.4	human	genbank	58_37c	-1	validated	frame_shift_del	c.1005	p.M336fs	0.999	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
IL16	3603	genome.wustl.edu	37	15	81598849	81598849	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	15	81598849	81598849	C	T	SNP	IL16	NM_172217.3	human	genbank	58_37c	+1	reviewed	silent	c.3768	p.H1256	0.120	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
KCNA6	3742	genome.wustl.edu	37	12	4919736	4919736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	12	4919736	4919736	G	A	SNP	KCNA6	NM_002235.3	human	genbank	58_37c	+1	reviewed	missense	c.529	p.A177T	1.000	superfamily_SSF81324	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	-	no_errors
KCNMA1	3778	genome.wustl.edu	37	10	78787645	78787645	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	78787645	78787645	A	G	SNP	KCNMA1	NM_001014797.2	human	genbank	58_37c	-1	reviewed	missense	c.1864	p.C622R	1.000	HMMPfam_BK_channel_a	PatternScan_N6_MTASE,HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1644	85352	genome.wustl.edu	37	22	44681419	44681439	+	In_Frame_Del	DEL	GGGGCCCGCTGACCCGGCCGA	GGGGCCCGCTGACCCGGCCGA	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	GGGGCCCGCTGACCCGGCCGA	GGGGCCCGCTGACCCGGCCGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	22	44681419	44681439	GGGGCCCGCTGACCCGGCCGA	-	DEL	KIAA1644	ENST00000381176	human	ensembl	58_37c	-1	known	in_frame_del	c.488_468	p.RPGQRAP157in_frame_del	0.008:0.008:0.008:0.008:0.001:0.000:0.841:0.923:1.000:0.999:0.970:0.046:0.037:0.045:0.017:0.827:0.979:0.963:0.165:0.127:0.117	NULL	NULL	-	no_errors
KLK5	25818	genome.wustl.edu	37	19	51453283	51453283	+	Missense_Mutation	SNP	C	C	T	rs2232532	byCluster;byFrequency;by1000genomes	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	51453283	51453283	C	T	SNP	KLK5	NM_001077491.1	human	genbank	58_37c	-1	reviewed	missense	c.163	p.G55R	0.000	superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
L1CAM	3897	genome.wustl.edu	37	X	153134370	153134370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	153134370	153134370	C	T	SNP	L1CAM	NM_000425.3	human	genbank	58_37c	-1	reviewed	silent	c.1305	p.T435	0.048	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
NHSL2	340527	genome.wustl.edu	37	X	71359877	71359877	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	71359877	71359877	G	T	SNP	NHSL2	NM_001013627.2	human	genbank	58_37c	+1	provisional	missense	c.1381	p.D461Y	1.000	NULL	NULL	-	no_errors
NT5C3	51251	genome.wustl.edu	37	7	33075569	33075569	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	33075569	33075569	C	G	SNP	NT5C3	NM_016489.11	human	genbank	58_37c	-1	reviewed	missense	c.13	p.E5Q	1.000	NULL	HMMPfam_UMPH-1,superfamily_SSF56784	-	no_errors
OLIG3	167826	genome.wustl.edu	37	6	137815024	137815024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	6	137815024	137815024	C	T	SNP	OLIG3	NM_175747.2	human	genbank	58_37c	-1	provisional	missense	c.284	p.R95Q	1.000	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
PDGFRB	5159	genome.wustl.edu	37	5	149504348	149504348	+	Silent	SNP	C	C	T	rs56072663	byCluster;byFrequency;by1000genomes	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	5	149504348	149504348	C	T	SNP	PDGFRB	NM_002609.3	human	genbank	58_37c	-1	reviewed	silent	c.1854	p.T618	0.622	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
PHC1B	0	genome.wustl.edu	37	12	55807465	55807465	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	12	55807465	55807465	G	T	SNP	PHC1B	ENST00000326184	human	ensembl	58_37c	-1	known	missense	c.1056	p.N352K	0.986	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_zf-FCS,superfamily_SAM/Pointed domain	-	no_errors
PHF8	23133	genome.wustl.edu	37	X	54029058	54029059	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	X	54029058	54029059	AA	-	DEL	PHF8	NM_015107.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1004_1003	p.L335fs	1.000:1.000	HMMSmart_SM00558,superfamily_Clavaminate synthase-like	HMMSmart_SM00249,HMMSmart_SM00558,superfamily_FYVE/PHD zinc finger,PatternScan_EGF_2,HMMPfam_JmjC,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Clavaminate synthase-like	-	no_errors
PLIN5	0	genome.wustl.edu	37	19	4529859	4529859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	4529859	4529859	G	A	SNP	PLIN5	NM_001013706.2	human	genbank	58_37c	-1	validated	silent	c.276	p.L92	0.001	HMMPfam_Perilipin	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors
PSMD8	5714	genome.wustl.edu	37	19	38872860	38872860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	38872860	38872860	G	A	SNP	PSMD8	NM_002812.4	human	genbank	58_37c	+1	reviewed	missense	c.907	p.A303T	1.000	NULL	HMMPfam_SAC3_GANP,PatternScan_PHOSPHOPANTETHEINE	-	no_errors
RBM23	55147	genome.wustl.edu	37	14	23374208	23374208	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	14	23374208	23374208	C	A	SNP	RBM23	NM_001077351.1	human	genbank	58_37c	-1	reviewed	missense	c.740	p.R247L	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RNLS	55328	genome.wustl.edu	37	10	90122432	90122432	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	90122432	90122432	G	A	SNP	RNLS	NM_001031709.2	human	genbank	58_37c	-1	validated	nonsense	c.577	p.R193*	1.000	superfamily_FAD/NAD(P)-binding domain	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain	-	no_errors
RPAP2	79871	genome.wustl.edu	37	1	92801915	92801915	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	1	92801915	92801915	T	-	DEL	RPAP2	ENST00000370343	human	ensembl	58_37c	+1	known	frame_shift_del	c.1550	p.L518fs	1.000	NULL	HMMPfam_RPAP2_Rtr1	-	no_errors
SCN5A	6331	genome.wustl.edu	37	3	38601670	38601670	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	3	38601670	38601670	C	T	SNP	SCN5A	NM_001099404.1	human	genbank	58_37c	-1	reviewed	missense	c.4213	p.V1405M	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SFTPA1	653509	genome.wustl.edu	37	10	81372138	81372138	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	10	81372138	81372138	C	T	SNP	SFTPA1	NM_001093770.2	human	genbank	58_37c	+1	reviewed	silent	c.243	p.I81	0.000	HMMPfam_Collagen	HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
SIX1	6495	genome.wustl.edu	37	14	61113136	61113136	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	14	61113136	61113136	G	A	SNP	SIX1	NM_005982.3	human	genbank	58_37c	-1	reviewed	silent	c.720	p.H240	0.977	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
SLC5A9	200010	genome.wustl.edu	37	1	48698155	48698155	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	1	48698155	48698155	C	T	SNP	SLC5A9	ENST00000425816	human	ensembl	58_37c	+1	known	nonsense	c.808	p.Q270*	1.000	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors
SSPO	23145	genome.wustl.edu	37	7	149500315	149500315	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	7	149500315	149500315	A	C	SNP	SSPO	ENST00000378016	human	ensembl	58_37c	+1	known	missense	c.7841	p.D2614A	1.000	superfamily_Serine proterase inhibitors	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,PatternScan_BPTI_KUNITZ_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_Galactose-binding domain-like,PatternScan_EGF_1,HMMPfam_C8,PatternScan_GLYCO_HORMONE_BETA_1,HMMPfam_TIL	-	no_errors
TMIGD2	126259	genome.wustl.edu	37	19	4298146	4298146	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	19	4298146	4298146	G	A	SNP	TMIGD2	NM_144615.2	human	genbank	58_37c	-1	validated	silent	c.243	p.C81	0.198	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	17	7578271	7578271	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.578	p.H193R	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103271312	103271312	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	8	103271312	103271312	C	A	SNP	UBR5	NM_015902.4	human	genbank	58_37c	-1	reviewed	nonsense	c.8002	p.E2668*	1.000	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1	-	no_errors
YTHDC1	91746	genome.wustl.edu	37	4	69202888	69202902	+	In_Frame_Del	DEL	TCTTCCTCCTCCTCC	TCTTCCTCCTCCTCC	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	TCTTCCTCCTCCTCC	TCTTCCTCCTCCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	4	69202888	69202902	TCTTCCTCCTCCTCC	-	DEL	YTHDC1	NM_001031732.2	human	genbank	58_37c	-1	validated	in_frame_del	c.740_726	p.EEEEE245in_frame_del	1.000:1.000:0.643:0.997:0.998:0.921:0.997:0.993:0.693:0.978:0.990:0.980:0.987:0.986:0.135	NULL	HMMPfam_YTH	-	no_errors
ZBTB49	0	genome.wustl.edu	37	4	4304086	4304086	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	4	4304086	4304086	C	-	DEL	ZBTB49	NM_145291.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.523	p.P175fs	0.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF720	124411	genome.wustl.edu	37	16	31734054	31734054	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AQ-A04L-01B-21D-A10M-09	TCGA-AQ-A04L-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e8d7feb0-981b-4ba0-b4d4-fa985064444b	c2f7e5fb-0cff-43dd-959e-00f6b1d4b257	16	31734054	31734054	C	A	SNP	ZNF720	NM_001130913.1	human	genbank	58_37c	+1	validated	nonsense	c.111	p.Y37*	0.945	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	-	no_errors
