Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACSBG2	81616	genome.wustl.edu	37	19	6183236	6183236	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	6183236	6183236	C	T	SNP	ACSBG2	NM_030924.3	human	genbank	58_37c	+1	validated	silent	c.1275	p.S425	0.997	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
ADD2	119	genome.wustl.edu	37	2	70931513	70931513	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	70931513	70931513	G	A	SNP	ADD2	NM_001617.3	human	genbank	58_37c	-1	reviewed	nonsense	c.262	p.R88*	1.000	NULL	HMMPfam_Aldolase_II,superfamily_AraD-like aldolase/epimerase	-	no_errors
ADRA1B	147	genome.wustl.edu	37	5	159344505	159344531	+	In_Frame_Del	DEL	CCGAAGAACCCTTCTATGCCCTCTTCT	CCGAAGAACCCTTCTATGCCCTCTTCT	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	CCGAAGAACCCTTCTATGCCCTCTTCT	CCGAAGAACCCTTCTATGCCCTCTTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	159344505	159344531	CCGAAGAACCCTTCTATGCCCTCTTCT	-	DEL	ADRA1B	NM_000679.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.593_619	p.EEPFYALFS199in_frame_del	1.000:0.003:0.999:1.000:1.000:1.000:1.000:0.997:1.000:1.000:0.830:0.995:1.000:1.000:1.000:1.000:0.910:1.000:1.000:0.994:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
AKT3	10000	genome.wustl.edu	37	1	243727042	243727042	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	243727042	243727042	G	C	SNP	AKT3	NM_005465.3	human	genbank	58_37c	-1	reviewed	missense	c.928	p.P310A	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
ANO2	57101	genome.wustl.edu	37	12	5674793	5674793	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	5674793	5674793	G	T	SNP	ANO2	NM_020373.2	human	genbank	58_37c	-1	validated	missense	c.2658	p.N886K	0.884	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
AWAT1	158833	genome.wustl.edu	37	X	69459753	69459753	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	69459753	69459753	C	T	SNP	AWAT1	NM_001013579.2	human	genbank	58_37c	+1	reviewed	silent	c.801	p.L267	0.704	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
BICC1	80114	genome.wustl.edu	37	10	60553276	60553276	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	60553276	60553276	G	A	SNP	BICC1	NM_001080512.1	human	genbank	58_37c	+1	reviewed	missense	c.1080	p.M360I	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00322,superfamily_SAM/Pointed domain,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
BSDC1	55108	genome.wustl.edu	37	1	32849538	32849538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	32849538	32849538	C	T	SNP	BSDC1	NM_001143888.1	human	genbank	58_37c	-1	validated	missense	c.301	p.V101M	1.000	NULL	HMMPfam_BSD,HMMSmart_BSD	-	no_errors
C11orf52	91894	genome.wustl.edu	37	11	111789707	111789707	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	111789707	111789707	G	C	SNP	C11orf52	NM_080659.2	human	genbank	58_37c	+1	validated	missense	c.11	p.R4P	0.007	NULL	NULL	-	no_errors
C14orf37	145407	genome.wustl.edu	37	14	58604819	58604826	+	Frame_Shift_Del	DEL	CTCCCGTA	CTCCCGTA	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	CTCCCGTA	CTCCCGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	58604819	58604826	CTCCCGTA	-	DEL	C14orf37	NM_001001872.2	human	genbank	58_37c	-1	predicted	frame_shift_del	c.1258_1251	p.S417fs	0.004:0.005:0.000:0.000:0.000:0.002:0.000:0.000	NULL	NULL	-	no_errors
CAP1	10487	genome.wustl.edu	37	1	40525103	40525103	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	40525103	40525103	C	G	SNP	CAP1	NM_001105530.1	human	genbank	58_37c	+1	reviewed	missense	c.85	p.R29G	0.709	HMMPfam_CAP_N	HMMSmart_SM00673,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,PatternScan_CAP_1,PatternScan_CAP_2	-	no_errors
CCKAR	886	genome.wustl.edu	37	4	26491054	26491054	+	Silent	SNP	G	G	A	rs143718810	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	26491054	26491054	G	A	SNP	CCKAR	NM_000730.2	human	genbank	58_37c	-1	reviewed	silent	c.165	p.S55	0.991	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_CholecysA-Rec_N,superfamily_Family A G protein-coupled receptor-like	-	no_errors
CD300A	11314	genome.wustl.edu	37	17	72469868	72469868	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	17	72469868	72469868	G	C	SNP	CD300A	NM_007261.2	human	genbank	58_37c	+1	validated	missense	c.234	p.R78S	0.997	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
CDC42BPA	8476	genome.wustl.edu	37	1	227333330	227333344	+	In_Frame_Del	DEL	CTATTCCATTTTGAC	CTATTCCATTTTGAC	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	CTATTCCATTTTGAC	CTATTCCATTTTGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	227333330	227333344	CTATTCCATTTTGAC	-	DEL	CDC42BPA	NM_003607.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1003_989	p.GQNGI330in_frame_del	1.000:1.000:1.000:1.000:0.987:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:0.996:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_PBD,HMMSmart_S_TK_X,HMMPfam_CNH,HMMSmart_CNH,HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DMPK_coil,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
CNIH	10175	genome.wustl.edu	37	14	54896977	54896977	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	54896977	54896977	A	C	SNP	CNIH	NM_005776.2	human	genbank	58_37c	-1	validated	splice_site	c.407+2	e4+2	1.000	-	-	-	no_errors
CNKSR3	154043	genome.wustl.edu	37	6	154763259	154763259	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	154763259	154763259	T	A	SNP	CNKSR3	NM_173515.2	human	genbank	58_37c	-1	validated	missense	c.382	p.I128F	1.000	HMMPfam_CRIC_ras_sig	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_SAM_1,HMMSmart_SAM,HMMPfam_DUF1170,superfamily_SAM_homology,HMMPfam_CRIC_ras_sig	-	no_errors
CRIP2	1397	genome.wustl.edu	37	14	105945815	105945815	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	105945815	105945815	C	G	SNP	CRIP2	NM_001312.2	human	genbank	58_37c	+1	provisional	missense	c.544	p.L182V	1.000	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
DYNC1I1	1780	genome.wustl.edu	37	7	95726876	95726876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	95726876	95726876	G	A	SNP	DYNC1I1	NM_004411.4	human	genbank	58_37c	+1	validated	missense	c.1909	p.E637K	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
EIF3I	8668	genome.wustl.edu	37	1	32691906	32691906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	32691906	32691906	G	A	SNP	EIF3I	NM_003757.2	human	genbank	58_37c	+1	validated	missense	c.385	p.D129N	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000244764	0	genome.wustl.edu	37	9	140176642	140176645	+	RNA	DEL	TCTT	TCTT	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TCTT	TCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	140176642	140176645	TCTT	-	DEL	C9orf167	NM_017723.2	human	genbank	58_37c	+1	validated	3_prime_untranslated_region	c.*2229	NULL	0.003:0.000:0.000:0.000	-	-	-	no_errors
ENSG00000245569	0	genome.wustl.edu	37	5	14870158	14870159	+	RNA	INS	-	-	GAA	rs77268927	byCluster;by1000genomes	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	14870158	14870159	-	GAA	INS	ANKH	NM_054027.4	human	genbank	58_37c	-1	reviewed	intronic	c.96+1302_96+1301	e1+1302	0.000:0.000	-	-	-	no_errors
ENSG00000246141	0	genome.wustl.edu	37	1	19666205	19666205	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	19666205	19666205	G	T	SNP	CAPZB	ENST00000375145	human	ensembl	58_37c	-1	known	intronic	c.918-94	e10-94	0.000	-	-	-	no_errors
ENSG00000246950	0	genome.wustl.edu	37	5	176757955	176757956	+	RNA	INS	-	-	GT	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	176757955	176757956	-	GT	INS	RGS14	NM_006480.4	human	genbank	58_37c	+1	reviewed	5_prime_flanking_region	c.-27071	NULL	0.001:0.001	-	-	-	no_errors
ENSG00000246950	0	genome.wustl.edu	37	5	176757965	176757966	+	RNA	INS	-	-	CC	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	176757965	176757966	-	CC	INS	RGS14	NM_006480.4	human	genbank	58_37c	+1	reviewed	5_prime_flanking_region	c.-27061	NULL	0.002:0.000	-	-	-	no_errors
ENSG00000248021	0	genome.wustl.edu	37	1	228585022	228585022	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	228585022	228585022	C	G	SNP	TRIM11	ENST00000475775	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-228585022	NULL	0.000	-	-	-	no_coding_region
EPHA10	284656	genome.wustl.edu	37	1	38185168	38185168	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	38185168	38185168	T	G	SNP	EPHA10	NM_001099439.1	human	genbank	58_37c	-1	validated	silent	c.2674	p.R892	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2	-	no_errors
ETV1	2115	genome.wustl.edu	37	7	13946060	13946060	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	13946060	13946060	C	G	SNP	ETV1	NM_004956.4	human	genbank	58_37c	-1	validated	missense	c.1105	p.E369Q	1.000	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_ETS_PEA3_N,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
F8	2157	genome.wustl.edu	37	X	154159895	154159895	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	154159895	154159895	A	G	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	silent	c.2170	p.L724	1.000	PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
F8	2157	genome.wustl.edu	37	X	154194287	154194287	+	Missense_Mutation	SNP	G	G	C	rs149756842	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	154194287	154194287	G	C	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	missense	c.1401	p.I467M	0.980	superfamily_Cupredoxins	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
FAAH2	158584	genome.wustl.edu	37	X	57358158	57358158	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	57358158	57358158	T	C	SNP	FAAH2	NM_174912.3	human	genbank	58_37c	+1	reviewed	silent	c.540	p.C180	1.000	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes	HMMPfam_Amidase,superfamily_Amidase signature (AS) enzymes,PatternScan_AMIDASES	-	no_errors
FAM193B	54540	genome.wustl.edu	37	5	176980253	176980253	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	176980253	176980253	C	A	SNP	FAM193B	NR_024019.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
FER1L5	90342	genome.wustl.edu	37	2	97327959	97327959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	97327959	97327959	C	A	SNP	FER1L5	NM_001113382.1	human	genbank	58_37c	+1	provisional	missense	c.975	p.H325Q	0.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
HDAC10	83933	genome.wustl.edu	37	22	50688545	50688545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	22	50688545	50688545	C	T	SNP	HDAC10	ENST00000415993	human	ensembl	58_37c	-1	known	missense	c.239	p.S80N	1.000	NULL	HMMPfam_Hist_deacetyl,superfamily_SSF52768	-	no_errors
HDAC2	3066	genome.wustl.edu	37	6	114277211	114277215	+	Frame_Shift_Del	DEL	TAACG	TAACG	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TAACG	TAACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	114277211	114277215	TAACG	-	DEL	HDAC2	NM_001527.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.745_741	p.Y247fs	1.000:1.000:1.000:1.000:0.997	HMMPfam_Hist_deacetyl,superfamily_SSF52768	HMMPfam_Hist_deacetyl,superfamily_SSF52768	-	no_errors
HERC2	8924	genome.wustl.edu	37	15	28446656	28446656	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	28446656	28446656	T	A	SNP	HERC2	NM_004667.4	human	genbank	58_37c	-1	reviewed	silent	c.7662	p.R2554	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
HNF4A	3172	genome.wustl.edu	37	20	43036067	43036067	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	20	43036067	43036067	C	G	SNP	HNF4A	NM_000457.3	human	genbank	58_37c	+1	reviewed	missense	c.337	p.R113G	0.990	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
HOXA4	3201	genome.wustl.edu	37	7	27168912	27168918	+	Frame_Shift_Del	DEL	TTTGTGC	TTTGTGC	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TTTGTGC	TTTGTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	27168912	27168918	TTTGTGC	-	DEL	HOXA4	NM_002141.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.895_889	p.A297fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
IFIT5	24138	genome.wustl.edu	37	10	91177984	91177984	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	91177984	91177984	A	G	SNP	IFIT5	NM_012420.2	human	genbank	58_37c	+1	validated	missense	c.1028	p.D343G	1.000	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
IKBKE	9641	genome.wustl.edu	37	1	206650162	206650162	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	206650162	206650162	C	T	SNP	IKBKE	NM_014002.2	human	genbank	58_37c	+1	validated	missense	c.682	p.R228W	0.723	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
IL1RAPL2	26280	genome.wustl.edu	37	X	104728375	104728375	+	Missense_Mutation	SNP	G	G	T	rs149128340	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	104728375	104728375	G	T	SNP	IL1RAPL2	NM_017416.1	human	genbank	58_37c	+1	reviewed	missense	c.768	p.Q256H	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_TIR,HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
KCNC2	3747	genome.wustl.edu	37	12	75441951	75441951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	75441951	75441951	C	T	SNP	KCNC2	NM_139137.2	human	genbank	58_37c	-1	reviewed	missense	c.1762	p.D588N	1.000	NULL	HMMSmart_SM00225,HMMPfam_K_tetra,HMMPfam_Ion_trans,superfamily_POZ domain,superfamily_Voltage-gated potassium channels	-	no_errors
KCNJ8	3764	genome.wustl.edu	37	12	21919255	21919255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	21919255	21919255	C	T	SNP	KCNJ8	NM_004982.2	human	genbank	58_37c	-1	reviewed	missense	c.677	p.R226H	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
KCNQ1OT1	10984	genome.wustl.edu	37	11	2719675	2719675	+	RNA	DEL	C	C	-	rs61105054	byCluster	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	11	2719675	2719675	C	-	DEL	KCNQ1OT1	NR_002728.2	human	genbank	58_37c	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	no_errors
KIAA0232	9778	genome.wustl.edu	37	4	6863899	6863899	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	6863899	6863899	G	C	SNP	KIAA0232	NM_001100590.1	human	genbank	58_37c	+1	validated	missense	c.1790	p.S597T	1.000	NULL	NULL	-	no_errors
KIAA1310	55683	genome.wustl.edu	37	2	97267392	97267392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	97267392	97267392	G	A	SNP	KIAA1310	NM_001115016.1	human	genbank	58_37c	-1	validated	silent	c.2604	p.P868	0.920	NULL	superfamily_SSF53474	-	no_errors
KIAA1683	80726	genome.wustl.edu	37	19	18377840	18377840	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	18377840	18377840	C	A	SNP	KIAA1683	NM_001145304.1	human	genbank	58_37c	-1	validated	missense	c.510	p.Q170H	0.997	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KRT14	3861	genome.wustl.edu	37	17	39740663	39740663	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	17	39740663	39740663	T	C	SNP	KRT14	NM_000526.4	human	genbank	58_37c	-1	reviewed	missense	c.611	p.Y204C	0.939	HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LAMA3	3909	genome.wustl.edu	37	18	21481288	21481288	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	18	21481288	21481288	G	T	SNP	LAMA3	NM_198129.1	human	genbank	58_37c	+1	reviewed	splice_site	c.6201+1	e48+1	1.000	-	-	-	no_errors
LOC148413	0	genome.wustl.edu	37	1	1336478	1336478	+	RNA	SNP	G	A	A	rs113869112	by1000genomes	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	1336478	1336478	G	A	SNP	LOC148413	NR_015434.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC148413	0	genome.wustl.edu	37	1	1336814	1336814	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	1336814	1336814	G	A	SNP	LOC148413	NR_015434.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC651986	651986	genome.wustl.edu	37	7	344699	344699	+	Missense_Mutation	SNP	T	A	A	rs36130523	byFrequency;by1000genomes	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	344699	344699	T	A	SNP	LOC100293864	XM_002346018.1	human	genbank	58_37c	+1	model	5_prime_flanking_region	c.-8679	NULL	0.020	-	-	-	no_stop_codon
LOC729501	729501	genome.wustl.edu	37	13	19043832	19043832	+	Missense_Mutation	SNP	A	A	T	rs75876620	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	13	19043832	19043832	A	T	SNP	LOC729501	XM_002343229.1	human	genbank	58_37c	-1	model	missense	c.406	p.S136T	0.995	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	pseudogene
MAGEC3	139081	genome.wustl.edu	37	X	140969432	140969432	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	140969432	140969432	A	G	SNP	MAGEC3	NM_138702.1	human	genbank	58_37c	+1	reviewed	silent	c.759	p.V253	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAMLD1	10046	genome.wustl.edu	37	X	149639246	149639246	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	149639246	149639246	C	A	SNP	MAMLD1	NM_005491.3	human	genbank	58_37c	+1	reviewed	silent	c.1401	p.G467	0.027	NULL	NULL	-	no_errors
MAN2A1	4124	genome.wustl.edu	37	5	109200756	109200756	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	109200756	109200756	A	G	SNP	MAN2A1	NM_002372.2	human	genbank	58_37c	+1	reviewed	missense	c.3191	p.N1064S	0.602	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	HMMPfam_Glyco_hydro_38,superfamily_Gal_mut_like,superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_SSF88688	-	no_errors
MAPKBP1	23005	genome.wustl.edu	37	15	42113197	42113197	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	42113197	42113197	G	C	SNP	MAPKBP1	NM_001128608.1	human	genbank	58_37c	+1	validated	silent	c.2667	p.S889	0.006	NULL	HMMSmart_SM00320,PatternScan_PTS_HPR_SER,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
MET	4233	genome.wustl.edu	37	7	116340214	116340216	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340214	116340216	GAT	-	DEL	MET	NM_001127500.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1076_1078	p.RS359in_frame_delP	1.000:1.000:1.000	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Ig_E-set,superfamily_Plexin-like_fold,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
MET	4233	genome.wustl.edu	37	7	116340219	116340221	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	GCC	GCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340219	116340221	GCC	-	DEL	MET	NM_001127500.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1081_1083	p.A361in_frame_del	1.000:1.000:0.022	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Ig_E-set,superfamily_Plexin-like_fold,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
MET	4233	genome.wustl.edu	37	7	116340222	116340223	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	116340222	116340223	-	T	INS	MET	NM_001127500.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1084_1085	p.M362fs	0.551:1.000	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_IPT,HMMSmart_PSI,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,superfamily_Ig_E-set,superfamily_Plexin-like_fold,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
MMS19	64210	genome.wustl.edu	37	10	99220677	99220677	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	99220677	99220677	G	A	SNP	MMS19	NM_022362.4	human	genbank	58_37c	-1	validated	missense	c.2399	p.T800I	1.000	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat,PatternScan_PEROXIDASE_1	-	no_errors
NF2	4771	genome.wustl.edu	37	22	30057312	30057312	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	22	30057312	30057312	C	A	SNP	NF2	NM_000268.3	human	genbank	58_37c	+1	reviewed	nonsense	c.794	p.S265*	1.000	HMMPfam_FERM_C,superfamily_PH domain-like	superfamily_Moesin tail domain,HMMPfam_ERM,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
NKTR	4820	genome.wustl.edu	37	3	42678448	42678448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	42678448	42678448	C	A	SNP	NKTR	NM_005385.3	human	genbank	58_37c	+1	reviewed	missense	c.1252	p.L418I	0.000	NULL	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase	-	no_errors
NOX3	50508	genome.wustl.edu	37	6	155750119	155750119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	155750119	155750119	C	T	SNP	NOX3	NM_015718.2	human	genbank	58_37c	-1	reviewed	silent	c.954	p.A318	0.147	HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl	HMMPfam_FAD_binding_8,HMMPfam_NAD_binding_6,HMMPfam_Ferric_reduct,superfamily_Riboflavin_synthase_like_b-brl,superfamily_SSF52343	-	no_errors
ODF1	4956	genome.wustl.edu	37	8	103572897	103572898	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	8	103572897	103572898	TG	-	DEL	ODF1	NM_024410.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.538_539	p.V181fs	0.120:0.137	superfamily_HSP20_chap	superfamily_HSP20_chap	-	no_errors
PASD1	139135	genome.wustl.edu	37	X	150844587	150844587	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	150844587	150844587	A	G	SNP	PASD1	NM_173493.2	human	genbank	58_37c	+1	reviewed	missense	c.2294	p.E765G	0.002	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
PDIA4	9601	genome.wustl.edu	37	7	148709414	148709419	+	In_Frame_Del	DEL	TTCTCA	TTCTCA	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	TTCTCA	TTCTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	148709414	148709419	TTCTCA	-	DEL	PDIA4	NM_004911.4	human	genbank	58_37c	-1	validated	in_frame_del	c.653_648	p.YEKAAK216in_frame_del*	1.000:1.000:1.000:1.000:1.000:0.822	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
PDIA5	10954	genome.wustl.edu	37	3	122811242	122811242	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	122811242	122811242	G	A	SNP	PDIA5	ENST00000316218	human	ensembl	58_37c	+1	known	silent	c.210	p.V70	1.000	superfamily_Thiordxn-like_fd	PatternScan_ER_TARGET,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
PRKCI	5584	genome.wustl.edu	37	3	170015134	170015134	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	170015134	170015134	G	C	SNP	PRKCI	NM_002740.5	human	genbank	58_37c	+1	reviewed	missense	c.1540	p.A514P	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_PB1,HMMSmart_PB1,HMMSmart_S_TK_X,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF54277,superfamily_SSF57889	-	no_errors
PROX2	283571	genome.wustl.edu	37	14	75329523	75329523	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	14	75329523	75329523	G	T	SNP	PROX2	NM_001080408.1	human	genbank	58_37c	-1	provisional	missense	c.1015	p.H339N	0.070	NULL	HMMPfam_Prox1,superfamily_Homeodomain-like	-	no_errors
PRUNE2	158471	genome.wustl.edu	37	9	79320287	79320287	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	79320287	79320287	G	C	SNP	PRUNE2	NM_015225.2	human	genbank	58_37c	-1	validated	missense	c.6903	p.H2301Q	0.998	NULL	HMMSmart_SEC14,superfamily_CRAL_TRIO_C,superfamily_Ferritin/RR_like,superfamily_SSF64182	-	no_errors
PTPN20C	0	genome.wustl.edu	37	10	49313245	49313245	+	Missense_Mutation	SNP	C	C	T	rs71242628	byCluster;byFrequency	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	10	49313245	49313245	C	T	SNP	PTPN20C	ENST00000316733	human	ensembl	58_37c	-1	known	missense	c.295	p.E99K	0.002	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_stop_codon
PVRL3	25945	genome.wustl.edu	37	3	110852796	110852796	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	110852796	110852796	G	A	SNP	PVRL3	NM_015480.1	human	genbank	58_37c	+1	provisional	missense	c.1384	p.E462K	1.000	NULL	HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
RBAK	57786	genome.wustl.edu	37	7	5096958	5096958	+	Silent	SNP	T	T	C	rs11975068	byCluster;byFrequency;by2Hit2Allele;by1000genomes;byHapmap	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	5096958	5096958	T	C	SNP	RBAK	NM_021163.3	human	genbank	58_37c	+1	reviewed	silent	c.48	p.D16	0.992	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ROBO1	6091	genome.wustl.edu	37	3	78734951	78734951	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	3	78734951	78734951	C	A	SNP	ROBO1	NM_002941.3	human	genbank	58_37c	-1	reviewed	missense	c.1287	p.Q429H	1.000	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
SCFD2	152579	genome.wustl.edu	37	4	54231620	54231620	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	4	54231620	54231620	A	T	SNP	SCFD2	NM_152540.3	human	genbank	58_37c	-1	validated	silent	c.489	p.V163	0.002	NULL	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins	-	no_errors
SCN1A	6323	genome.wustl.edu	37	2	166848260	166848260	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	2	166848260	166848260	G	-	DEL	SCN1A	NM_006920.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.5492	p.P1831fs	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324	-	no_errors
SLC25A13	10165	genome.wustl.edu	37	7	95818665	95818665	+	Missense_Mutation	SNP	G	G	A	rs142308242	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	7	95818665	95818665	G	A	SNP	SLC25A13	NM_014251.2	human	genbank	58_37c	-1	reviewed	missense	c.874	p.R292W	0.995	superfamily_SSF47473	superfamily_Mitoch_carrier,HMMSmart_EFh,HMMPfam_Mito_carr,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
SLC7A3	84889	genome.wustl.edu	37	X	70149842	70149842	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	70149842	70149842	C	T	SNP	SLC7A3	NM_001048164.2	human	genbank	58_37c	-1	reviewed	silent	c.6	p.P2	0.801	NULL	HMMPfam_AA_permease	-	no_errors
SPEF2	79925	genome.wustl.edu	37	5	35727923	35727923	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	35727923	35727923	G	C	SNP	SPEF2	NM_024867.3	human	genbank	58_37c	+1	validated	missense	c.3061	p.E1021Q	1.000	NULL	HMMPfam_hATC,HMMPfam_DUF1042,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TLN1	7094	genome.wustl.edu	37	9	35711758	35711758	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	35711758	35711758	G	C	SNP	TLN1	NM_006289.3	human	genbank	58_37c	-1	reviewed	missense	c.3713	p.A1238G	1.000	HMMPfam_VBS	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
TPR	7175	genome.wustl.edu	37	1	186321122	186321122	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	186321122	186321122	G	T	SNP	TPR	NM_003292.2	human	genbank	58_37c	-1	reviewed	missense	c.2455	p.L819M	1.000	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors
TRPM6	140803	genome.wustl.edu	37	9	77435320	77435320	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	77435320	77435320	T	G	SNP	TRPM6	NM_017662.4	human	genbank	58_37c	-1	reviewed	missense	c.1034	p.E345A	0.997	NULL	HMMPfam_Alpha_kinase,HMMSmart_SM00811,HMMPfam_Ion_trans,superfamily_Protein kinase-like (PK-like)	-	no_errors
UBE2R2	54926	genome.wustl.edu	37	9	33917121	33917121	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	9	33917121	33917121	C	G	SNP	UBE2R2	NM_017811.3	human	genbank	58_37c	+1	reviewed	missense	c.603	p.N201K	1.000	NULL	HMMPfam_UQ_con,HMMSmart_SM00212,PatternScan_UBIQUITIN_CONJUGAT_1,superfamily_UBC-like	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215953193	215953193	+	Missense_Mutation	SNP	G	G	A	rs185823130	by1000genomes	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	1	215953193	215953193	G	A	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.10931	p.T3644M	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
VDR	7421	genome.wustl.edu	37	12	48240182	48240182	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	12	48240182	48240182	C	T	SNP	VDR	NM_000376.2	human	genbank	58_37c	-1	reviewed	silent	c.960	p.L320	0.999	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
VNN1	8876	genome.wustl.edu	37	6	133032939	133032939	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	6	133032939	133032939	C	A	SNP	VNN1	NM_004666.2	human	genbank	58_37c	-1	reviewed	missense	c.250	p.G84C	0.989	superfamily_Ntlse/CNhydtse	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse	-	no_errors
VPS13C	54832	genome.wustl.edu	37	15	62172909	62172909	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	62172909	62172909	G	C	SNP	VPS13C	NM_020821.1	human	genbank	58_37c	-1	validated	missense	c.9901	p.Q3301E	0.978	NULL	HMMPfam_DUF1162	-	no_errors
VPS18	57617	genome.wustl.edu	37	15	41195138	41195138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	15	41195138	41195138	C	T	SNP	VPS18	NM_020857.2	human	genbank	58_37c	+1	reviewed	missense	c.2521	p.R841W	1.000	NULL	HMMPfam_Pep3_Vps18,superfamily_ARM repeat	-	no_errors
ZIM3	114026	genome.wustl.edu	37	19	57649909	57649909	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	19	57649909	57649909	G	C	SNP	ZIM3	NM_052882.1	human	genbank	58_37c	-1	provisional	missense	c.73	p.L25V	0.003	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF300	91975	genome.wustl.edu	37	5	150275563	150275564	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	5	150275563	150275564	-	C	INS	ZNF300	NM_052860.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1238_1237	p.E413fs	0.885:0.871	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF711	7552	genome.wustl.edu	37	X	84526405	84526405	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TU-01A-31D-A10G-09	TCGA-AR-A0TU-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	31922dbe-3b4a-4ac1-98fc-db88ae851462	406d5b1c-1023-40c4-bd89-aaa03b36ac39	X	84526405	84526405	C	A	SNP	ZNF711	NM_021998.4	human	genbank	58_37c	+1	reviewed	missense	c.1857	p.H619Q	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_Zfx_Zfy_act,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
