Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATF3	467	genome.wustl.edu	37	1	212792849	212792849	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	212792849	212792849	G	C	SNP	ATF3	NM_001030287.2	human	genbank	58_37c	+1	reviewed	missense	c.498	p.E166D	1.000	NULL	HMMSmart_SM00338,PatternScan_BZIP_BASIC,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_2	-	no_errors
ATP4A	495	genome.wustl.edu	37	19	36054519	36054519	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	36054519	36054519	C	T	SNP	ATP4A	NM_000704.2	human	genbank	58_37c	-1	reviewed	splice_site	c.12+1	e1+1	0.989	-	-	-	no_errors
BCORL1	63035	genome.wustl.edu	37	X	129189983	129189983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	129189983	129189983	G	A	SNP	BCORL1	NM_021946.3	human	genbank	58_37c	+1	reviewed	missense	c.5008	p.E1670K	0.999	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
CCDC24	149473	genome.wustl.edu	37	1	44458238	44458238	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	44458238	44458238	C	T	SNP	CCDC24	NM_152499.1	human	genbank	58_37c	+1	provisional	missense	c.346	p.H116Y	0.998	NULL	NULL	-	no_errors
COL24A1	255631	genome.wustl.edu	37	1	86591291	86591291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	1	86591291	86591291	C	T	SNP	COL24A1	NM_152890.5	human	genbank	58_37c	-1	validated	missense	c.728	p.R243H	0.069	superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
DNAJC1	64215	genome.wustl.edu	37	10	22217445	22217445	+	Nonsense_Mutation	SNP	G	G	A	rs144492315	byCluster;by1000genomes	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	10	22217445	22217445	G	A	SNP	DNAJC1	NM_022365.3	human	genbank	58_37c	-1	provisional	nonsense	c.361	p.R121*	1.000	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1	HMMSmart_SANT,HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,superfamily_Homeodomain_like,HMMPfam_Myb_DNA-binding,PatternScan_DNAJ_1	-	no_errors
GRM6	2916	genome.wustl.edu	37	5	178415975	178415975	+	Missense_Mutation	SNP	G	G	A	rs147576667	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	5	178415975	178415975	G	A	SNP	GRM6	NM_000843.3	human	genbank	58_37c	-1	reviewed	missense	c.1315	p.R439W	1.000	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
HCFC1	3054	genome.wustl.edu	37	X	153219074	153219074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	153219074	153219074	G	A	SNP	HCFC1	NM_005334.2	human	genbank	58_37c	-1	reviewed	missense	c.4481	p.P1494L	0.996	NULL	HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Kelch_1,superfamily_Fibronectin type III,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
HCN1	348980	genome.wustl.edu	37	5	45262056	45262056	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	5	45262056	45262056	G	A	SNP	HCN1	NM_021072.2	human	genbank	58_37c	-1	validated	silent	c.2640	p.D880	0.746	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
MAGEB16	139604	genome.wustl.edu	37	X	35820757	35820757	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	35820757	35820757	G	A	SNP	MAGEB16	NM_001099921.1	human	genbank	58_37c	+1	provisional	silent	c.444	p.E148	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEE2	139599	genome.wustl.edu	37	X	75004102	75004102	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	75004102	75004102	G	C	SNP	MAGEE2	NM_138703.4	human	genbank	58_37c	-1	validated	missense	c.785	p.T262R	0.977	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MPDZ	8777	genome.wustl.edu	37	9	13224396	13224396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	9	13224396	13224396	G	C	SNP	MPDZ	NM_003829.3	human	genbank	58_37c	-1	validated	missense	c.370	p.Q124E	1.000	superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
OR2A1	346528	genome.wustl.edu	37	7	144015463	144015463	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	7	144015463	144015463	G	A	SNP	OR2A1	NM_001005287.1	human	genbank	58_37c	+1	provisional	silent	c.246	p.A82	0.002	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
POU2F3	25833	genome.wustl.edu	37	11	120180259	120180259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	11	120180259	120180259	C	T	SNP	POU2F3	NM_014352.2	human	genbank	58_37c	+1	validated	silent	c.1032	p.A344	0.731	NULL	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10221623	10221623	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	10221623	10221623	C	G	SNP	PPAN-P2RY11	NM_001040664.1	human	genbank	58_37c	+1	validated	missense	c.1204	p.L402V	0.996	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Brix,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PRCP	5547	genome.wustl.edu	37	11	82561013	82561013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	11	82561013	82561013	G	A	SNP	PRCP	NM_199418.2	human	genbank	58_37c	-1	reviewed	missense	c.757	p.H253Y	0.001	HMMPfam_Peptidase_S28	HMMPfam_Peptidase_S28,superfamily_SSF53474	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36252880	36252880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	21	36252880	36252880	A	G	SNP	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	missense	c.482	p.L161P	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	17	7579359	7579359	G	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.328	p.R110fs	0.028	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TSHZ3	57616	genome.wustl.edu	37	19	31770592	31770592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	31770592	31770592	G	A	SNP	TSHZ3	NM_020856.2	human	genbank	58_37c	-1	validated	missense	c.107	p.T36M	0.005	NULL	HMMPfam_Homeobox,HMMSmart_HOX,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
TSR2	90121	genome.wustl.edu	37	X	54470525	54470525	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	X	54470525	54470525	C	G	SNP	TSR2	NM_058163.1	human	genbank	58_37c	+1	provisional	missense	c.349	p.Q117E	0.993	NULL	HMMPfam_WGG	-	no_errors
UNC13A	23025	genome.wustl.edu	37	19	17760329	17760329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	19	17760329	17760329	C	T	SNP	UNC13A	NM_001080421.2	human	genbank	58_37c	-1	validated	missense	c.1771	p.V591M	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_Cysteine-rich domain	-	no_errors
WWP2	11060	genome.wustl.edu	37	16	69832690	69832690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01A-11D-A12Q-09	TCGA-AR-A1AN-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9c879ced-92e8-4292-9b24-46005acab0f4	69a46a7b-70d9-4789-b6ee-9a5971644d7e	16	69832690	69832690	G	A	SNP	WWP2	NM_007014.3	human	genbank	58_37c	+1	reviewed	missense	c.176	p.R59H	1.000	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
