Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS1	9510	genome.wustl.edu	37	21	28212320	28212320	+	Missense_Mutation	SNP	C	C	T	rs146313892	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	21	28212320	28212320	C	T	SNP	ADAMTS1	NM_006988.3	human	genbank	58_37c	-1	reviewed	missense	c.1726	p.G576S	1.000	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,HMMPfam_ADAM_spacer1,PatternScan_DISINTEGRIN_1,superfamily_SSF55486	-	no_errors
ANKLE1	126549	genome.wustl.edu	37	19	17394278	17394278	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	19	17394278	17394278	G	T	SNP	ANKLE1	NM_152363.4	human	genbank	58_37c	+1	validated	silent	c.705	p.S235	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_LEM	-	no_errors
ANKLE2	23141	genome.wustl.edu	37	12	133312082	133312082	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	133312082	133312082	T	C	SNP	ANKLE2	NM_015114.1	human	genbank	58_37c	-1	validated	missense	c.1610	p.K537R	0.150	NULL	superfamily_Ankyrin repeat,HMMPfam_LEM,superfamily_LEM domain	-	no_errors
B3GNT7	93010	genome.wustl.edu	37	2	232262638	232262638	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	2	232262638	232262638	G	T	SNP	B3GNT7	NM_145236.2	human	genbank	58_37c	+1	validated	missense	c.208	p.A70S	0.000	NULL	HMMPfam_Galactosyl_T	-	no_errors
BACH2	60468	genome.wustl.edu	37	6	90660239	90660239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	90660239	90660239	G	A	SNP	BACH2	NM_021813.2	human	genbank	58_37c	-1	validated	missense	c.1586	p.A529V	1.000	NULL	HMMSmart_BTB,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,superfamily_BTB/POZ_fold,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors
C5orf62	85027	genome.wustl.edu	37	5	150158455	150158455	+	Silent	SNP	C	C	T	rs148537758	by1000genomes	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	5	150158455	150158455	C	T	SNP	C5orf62	NM_032947.4	human	genbank	58_37c	+1	validated	silent	c.324	p.I108	0.000	NULL	NULL	-	no_errors
CDC40	51362	genome.wustl.edu	37	6	110550072	110550072	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	110550072	110550072	C	T	SNP	CDC40	NM_015891.2	human	genbank	58_37c	+1	reviewed	silent	c.1455	p.I485	1.000	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CPNE2	221184	genome.wustl.edu	37	16	57180088	57180088	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	57180088	57180088	T	C	SNP	CPNE2	NM_152727.4	human	genbank	58_37c	+1	reviewed	missense	c.1394	p.M465T	1.000	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors
DCHS2	54798	genome.wustl.edu	37	4	155157976	155157976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	155157976	155157976	G	A	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	missense	c.6463	p.P2155S	0.130	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DNAJB5	25822	genome.wustl.edu	37	9	34990767	34990767	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	9	34990767	34990767	T	G	SNP	DNAJB5	NM_001135005.1	human	genbank	58_37c	+1	validated	nonsense	c.140	p.L47*	1.000	NULL	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain,PatternScan_DNAJ_1	-	no_errors
DPP8	54878	genome.wustl.edu	37	15	65792988	65792988	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	15	65792988	65792988	T	G	SNP	DPP8	NM_197960.2	human	genbank	58_37c	-1	reviewed	missense	c.550	p.S184R	1.000	HMMPfam_DPPIV_N,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain	HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain	-	no_errors
EIF3I	8668	genome.wustl.edu	37	1	32694368	32694369	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	32694368	32694369	GG	-	DEL	EIF3I	NM_003757.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.680_681	p.R227fs	1.000:1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
EPB49	2039	genome.wustl.edu	37	8	21931298	21931298	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	8	21931298	21931298	A	T	SNP	EPB49	NM_001114135.2	human	genbank	58_37c	+1	validated	missense	c.787	p.I263F	0.985	NULL	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain	-	no_errors
FAM40A	85369	genome.wustl.edu	37	1	110586328	110586328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	110586328	110586328	G	A	SNP	FAM40A	NM_033088.2	human	genbank	58_37c	+1	validated	missense	c.1136	p.R379Q	1.000	NULL	HMMPfam_N1221	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115973	8115976	+	Frame_Shift_Del	DEL	CCGC	CCGC	-	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	CCGC	CCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	10	8115973	8115976	CCGC	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1322_1325	p.A442fs	1.000:0.996:1.000:1.000	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GRIK1	2897	genome.wustl.edu	37	21	31023532	31023532	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	21	31023532	31023532	T	C	SNP	GRIK1	NM_000830.3	human	genbank	58_37c	-1	reviewed	missense	c.860	p.N287S	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HIST1H1B	3009	genome.wustl.edu	37	6	27835099	27835099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	27835099	27835099	G	A	SNP	HIST1H1B	NM_005322.2	human	genbank	58_37c	-1	reviewed	missense	c.209	p.A70V	0.990	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785	HMMPfam_Linker_histone,HMMSmart_H15,superfamily_SSF46785	-	no_errors
HTR2A	3356	genome.wustl.edu	37	13	47469795	47469795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	13	47469795	47469795	C	T	SNP	HTR2A	NM_000621.3	human	genbank	58_37c	-1	reviewed	missense	c.247	p.V83I	0.061	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
IL12A	3592	genome.wustl.edu	37	3	159711616	159711620	+	Frame_Shift_Del	DEL	TGATG	TGATG	-	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	TGATG	TGATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	159711616	159711620	TGATG	-	DEL	IL12A	NM_000882.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.591_595	p.D198fs	0.260:0.282:0.193:0.000:0.003	HMMPfam_IL12,superfamily_4_helix_cytokine	HMMPfam_IL12,superfamily_4_helix_cytokine	-	no_errors
INSRR	3645	genome.wustl.edu	37	1	156813013	156813013	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	156813013	156813013	T	C	SNP	INSRR	NM_014215.1	human	genbank	58_37c	-1	validated	missense	c.2909	p.D970G	1.000	superfamily_Kinase_like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_Furin-like,HMMSmart_FU,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Grow_fac_recept,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52058	-	no_errors
LOC100130518	0	genome.wustl.edu	37	19	22487564	22487564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	19	22487564	22487564	G	A	SNP	LOC100130518	XM_001719773.2	human	genbank	58_37c	+1	model	missense	c.316	p.E106K	0.057	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	-	no_errors
LOC100287827	0	genome.wustl.edu	37	11	64622048	64622048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	11	64622048	64622048	C	T	SNP	LOC100287827	XM_002343094.1	human	genbank	58_37c	+1	model	missense	c.73	p.R25C	0.039	NULL	NULL	-	no_errors
LRBA	987	genome.wustl.edu	37	4	151356833	151356833	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	151356833	151356833	A	T	SNP	LRBA	NM_006726.2	human	genbank	58_37c	-1	validated	missense	c.6982	p.L2328M	1.000	HMMPfam_Beach,superfamily_BEACH domain	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_WD40 repeat-like,superfamily_ARM repeat,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
MAGI2	9863	genome.wustl.edu	37	7	78150872	78150881	+	Frame_Shift_Del	DEL	CTTGGAGTGG	CTTGGAGTGG	-	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	CTTGGAGTGG	CTTGGAGTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	7	78150872	78150881	CTTGGAGTGG	-	DEL	MAGI2	NM_012301.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.629_620	p.A207fs	1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00072	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MED15	51586	genome.wustl.edu	37	22	20937198	20937198	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	22	20937198	20937198	C	T	SNP	MED15	NM_001003891.1	human	genbank	58_37c	+1	reviewed	missense	c.1481	p.T494M	0.971	NULL	HMMPfam_ARC105_Med_act	-	no_errors
MEFV	4210	genome.wustl.edu	37	16	3299561	3299561	+	Missense_Mutation	SNP	C	C	T	rs144998416	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	3299561	3299561	C	T	SNP	MEFV	NM_000243.2	human	genbank	58_37c	-1	reviewed	missense	c.1130	p.R377H	0.002	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMPfam_PAAD_DAPIN,HMMSmart_SM00589,superfamily_DEATH domain,HMMSmart_SM00449,superfamily_B-box zinc-binding domain	-	no_errors
MIER1	57708	genome.wustl.edu	37	1	67447566	67447568	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	1	67447566	67447568	AAG	-	DEL	MIER1	NM_020948.3	human	genbank	58_37c	+1	validated	in_frame_del	c.1247_1249	p.E417in_frame_del	0.998:0.975:1.000	NULL	HMMPfam_ELM2,HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,PatternScan_EF_HAND_1	-	no_errors
NUTF2	10204	genome.wustl.edu	37	16	67902441	67902441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	16	67902441	67902441	C	T	SNP	NUTF2	NM_005796.1	human	genbank	58_37c	+1	reviewed	missense	c.209	p.A70V	1.000	HMMPfam_NTF2,superfamily_NTF2-like	HMMPfam_NTF2,PatternScan_WD_REPEATS_1,superfamily_NTF2-like	-	no_errors
PARD3	56288	genome.wustl.edu	37	10	34620159	34620159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	10	34620159	34620159	G	A	SNP	PARD3	NM_019619.3	human	genbank	58_37c	-1	validated	missense	c.2728	p.R910C	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PDGFRA	5156	genome.wustl.edu	37	4	55152033	55152033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	55152033	55152033	G	A	SNP	PDGFRA	NM_006206.4	human	genbank	58_37c	+1	reviewed	missense	c.2465	p.R822H	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
PDZRN3	23024	genome.wustl.edu	37	3	73432563	73432563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	73432563	73432563	C	T	SNP	PDZRN3	NM_015009.1	human	genbank	58_37c	-1	provisional	missense	c.3154	p.D1052N	0.999	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00184,superfamily_TRAF domain-like,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G			TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PRKG2	5593	genome.wustl.edu	37	4	82125820	82125820	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	4	82125820	82125820	C	A	SNP	PRKG2	NM_006259.1	human	genbank	58_37c	-1	provisional	nonsense	c.382	p.E128*	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
RBMS3	27303	genome.wustl.edu	37	3	29781333	29781333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	29781333	29781333	C	T	SNP	RBMS3	NM_001003793.2	human	genbank	58_37c	+1	reviewed	silent	c.522	p.D174	0.976	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
SDCCAG1	9147	genome.wustl.edu	37	14	50298943	50298943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	14	50298943	50298943	G	A	SNP	SDCCAG1	NM_004713.3	human	genbank	58_37c	-1	validated	missense	c.788	p.P263L	0.997	NULL	HMMPfam_DUF814,HMMPfam_FbpA	-	no_errors
SEPT4	5414	genome.wustl.edu	37	17	56603076	56603076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	17	56603076	56603076	C	T	SNP	SEPT4	NM_004574.2	human	genbank	58_37c	-1	reviewed	missense	c.518	p.R173Q	1.000	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SETD5	55209	genome.wustl.edu	37	3	9490166	9490166	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	3	9490166	9490166	C	A	SNP	SETD5	NM_001080517.1	human	genbank	58_37c	+1	provisional	missense	c.2198	p.A733E	1.000	NULL	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain	-	no_errors
SIRPG	55423	genome.wustl.edu	37	20	1616960	1616960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	20	1616960	1616960	G	A	SNP	SIRPG	NM_018556.3	human	genbank	58_37c	-1	reviewed	missense	c.622	p.R208C	0.878	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
SLC2A3	6515	genome.wustl.edu	37	12	8083112	8083112	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	12	8083112	8083112	G	C	SNP	SLC2A3	NM_006931.2	human	genbank	58_37c	-1	validated	missense	c.637	p.L213V	1.000	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter	-	no_errors
TAF4B	6875	genome.wustl.edu	37	18	23915146	23915146	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	18	23915146	23915146	C	G	SNP	TAF4B	NM_005640.1	human	genbank	58_37c	+1	validated	missense	c.2267	p.S756C	1.000	HMMPfam_TAF4	HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_TAF4,superfamily_Histone-fold	-	no_errors
TRDN	10345	genome.wustl.edu	37	6	123576256	123576256	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	123576256	123576256	C	T	SNP	TRDN	NM_006073.2	human	genbank	58_37c	-1	validated	missense	c.1921	p.E641K	0.569	NULL	HMMPfam_Triadin	-	no_errors
TULP4	56995	genome.wustl.edu	37	6	158834165	158834165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	6	158834165	158834165	C	T	SNP	TULP4	NM_020245.3	human	genbank	58_37c	+1	validated	silent	c.321	p.F107	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMPfam_Tub,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_SOCS_box,HMMSmart_SM00320,superfamily_TNF-like,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
VCAN	1462	genome.wustl.edu	37	5	82817939	82817939	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	5	82817939	82817939	G	T	SNP	VCAN	NM_004385.4	human	genbank	58_37c	+1	reviewed	nonsense	c.3814	p.E1272*	0.844	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
WDR20	91833	genome.wustl.edu	37	14	102675094	102675094	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01A-21D-A12Q-09	TCGA-AR-A1AV-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0a0dd89c-5ec8-4015-9616-733e41361a64	77cb1c29-4009-4669-bdb6-3ec5e74b65d1	14	102675094	102675094	G	A	SNP	WDR20	NM_181291.1	human	genbank	58_37c	+1	reviewed	missense	c.587	p.G196E	1.000	superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	-	no_errors
