Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFTPH	54812	genome.wustl.edu	37	2	64779110	64779110	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	2	64779110	64779110	T	G	SNP	AFTPH	NM_203437.2	human	genbank	58_37c	+1	validated	missense	c.502	p.L168V	0.995	NULL	PatternScan_EF_HAND_1	-	no_errors
ATP1B1	481	genome.wustl.edu	37	1	169076073	169076073	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	169076073	169076073	C	G	SNP	ATP1B1	NM_001677.3	human	genbank	58_37c	+1	reviewed	silent	c.6	p.A2	0.998	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors
BTN2A3	54718	genome.wustl.edu	37	6	26426628	26426628	+	Missense_Mutation	SNP	G	A	A	rs138017279	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	6	26426628	26426628	G	A	SNP	ENSG00000124549	ENST00000297020	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*26426628	NULL	0.000	-	-	-	no_coding_region
C20orf79	140856	genome.wustl.edu	37	20	18794881	18794881	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	20	18794881	18794881	T	C	SNP	C20orf79	NM_178483.2	human	genbank	58_37c	+1	validated	missense	c.422	p.L141P	1.000	HMMPfam_SCP2,superfamily_SCP2	HMMPfam_SCP2,superfamily_SCP2	-	no_errors
C6orf208	80069	genome.wustl.edu	37	6	170201195	170201195	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	6	170201195	170201195	C	T	SNP	C6orf208	NR_026780.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.005	-	-	-	no_errors
C9orf25	203259	genome.wustl.edu	37	9	34401098	34401098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	9	34401098	34401098	A	G	SNP	C9orf25	NM_147202.1	human	genbank	58_37c	-1	validated	missense	c.371	p.I124T	1.000	NULL	NULL	-	no_errors
CACNA1C	775	genome.wustl.edu	37	12	2676748	2676748	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	12	2676748	2676748	G	A	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	silent	c.1683	p.K561	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CDCA2	157313	genome.wustl.edu	37	8	25360909	25360909	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	8	25360909	25360909	G	A	SNP	CDCA2	NM_152562.2	human	genbank	58_37c	+1	validated	silent	c.1692	p.K564	1.000	NULL	NULL	-	no_errors
CNGB3	54714	genome.wustl.edu	37	8	87623885	87623885	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	8	87623885	87623885	C	T	SNP	CNGB3	NM_019098.4	human	genbank	58_37c	-1	reviewed	silent	c.1593	p.Q531	1.000	HMMSmart_SM00100,superfamily_cAMP-binding domain-like	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cAMP-binding domain-like,superfamily_Voltage-gated potassium channels	-	no_errors
ENSG00000246763	0	genome.wustl.edu	37	5	98106564	98106564	+	RNA	SNP	C	T	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	98106564	98106564	C	T	SNP	ENSG00000246763	ENST00000498871	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-98106564	NULL	0.000	-	-	-	no_coding_region
ENSG00000248090	0	genome.wustl.edu	37	16	18796542	18796542	+	RNA	SNP	T	A	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	16	18796542	18796542	T	A	SNP	RPS15A	NM_001019.4	human	genbank	58_37c	-1	reviewed	intronic	c.214-397	e3-397	0.000	-	-	-	no_errors
GPSM2	29899	genome.wustl.edu	37	1	109444429	109444429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	109444429	109444429	C	T	SNP	GPSM2	NM_013296.4	human	genbank	58_37c	+1	validated	missense	c.815	p.A272V	1.000	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_TPR_1,HMMPfam_GoLoco,HMMSmart_GoLoco,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
GRM6	2916	genome.wustl.edu	37	5	178413950	178413950	+	Silent	SNP	G	G	A	rs139745015	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	178413950	178413950	G	A	SNP	GRM6	NM_000843.3	human	genbank	58_37c	-1	reviewed	silent	c.1389	p.N463	0.319	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
LDHC	3948	genome.wustl.edu	37	11	18456442	18456442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	11	18456442	18456442	G	A	SNP	LDHC	NM_002301.4	human	genbank	58_37c	+1	reviewed	missense	c.574	p.E192K	1.000	HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C,PatternScan_L_LDH	HMMPfam_Ldh_1_N,HMMPfam_Ldh_1_C,superfamily_Lactate_DH/Glyco_hydro_4_C,superfamily_NAD(P)-bd,PatternScan_L_LDH	-	no_errors
LRP12	29967	genome.wustl.edu	37	8	105509765	105509765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	8	105509765	105509765	C	T	SNP	LRP12	NM_013437.4	human	genbank	58_37c	-1	reviewed	missense	c.1015	p.A339T	0.998	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module	-	no_errors
MMEL1	79258	genome.wustl.edu	37	1	2524333	2524334	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	2524333	2524334	-	C	INS	MMEL1	NM_033467.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1913_1912	p.Q638fs	1.000:1.000	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
NBPF9	440670	genome.wustl.edu	37	1	146403703	146403703	+	Missense_Mutation	SNP	T	T	G	rs77264529	byCluster;byFrequency	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	1	146403703	146403703	T	G	SNP	NBPF9	XM_001717398.2	human	genbank	58_37c	+1	model	missense	c.224	p.L75R	0.010	NULL	HMMPfam_DUF1220	-	no_errors
NEIL3	55247	genome.wustl.edu	37	4	178274553	178274553	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	4	178274553	178274553	C	T	SNP	NEIL3	NM_018248.2	human	genbank	58_37c	+1	validated	silent	c.1131	p.V377	0.782	NULL	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_zf-GRF,superfamily_S13-like H2TH domain,superfamily_N-terminal domain of MutM-like DNA repair proteins,HMMPfam_H2TH,PatternScan_ZF_FPG_1,superfamily_NZF domain	-	no_errors
PCDHB12	56124	genome.wustl.edu	37	5	140590839	140590839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	140590839	140590839	C	T	SNP	PCDHB12	NM_018932.3	human	genbank	58_37c	+1	reviewed	missense	c.2360	p.P787L	0.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCDHB3	56132	genome.wustl.edu	37	5	140481610	140481610	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	5	140481610	140481610	C	T	SNP	PCDHB3	NM_018937.2	human	genbank	58_37c	+1	reviewed	silent	c.1377	p.F459	0.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PRR23C	0	genome.wustl.edu	37	3	138762902	138762902	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	3	138762902	138762902	G	A	SNP	PRR23C	NM_001134657.1	human	genbank	58_37c	-1	validated	silent	c.561	p.S187	0.000	HMMPfam_DUF2476	HMMPfam_DUF2476	-	no_errors
SIDT2	51092	genome.wustl.edu	37	11	117063891	117063891	+	Missense_Mutation	SNP	C	C	T	rs142171036	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	11	117063891	117063891	C	T	SNP	SIDT2	NM_001040455.1	human	genbank	58_37c	+1	validated	missense	c.2128	p.R710C	1.000	NULL	NULL	-	no_errors
SIM1	6492	genome.wustl.edu	37	6	100895183	100895183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	6	100895183	100895183	G	A	SNP	SIM1	NM_005068.2	human	genbank	58_37c	-1	reviewed	missense	c.959	p.S320F	1.000	HMMSmart_PAC,HMMPfam_PAS_3,superfamily_SSF55785	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,HMMPfam_SIM_C,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
TIGD2	166815	genome.wustl.edu	37	4	90034880	90034880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	4	90034880	90034880	A	G	SNP	TIGD2	NM_145715.2	human	genbank	58_37c	+1	reviewed	missense	c.755	p.Q252R	1.000	HMMPfam_DDE	HMMPfam_DDE,HMMSmart_CENPB,HMMPfam_CENP-B_N,superfamily_Homeodomain_like,HMMPfam_CenpB-DNA-bind	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179397545	179397545	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	2	179397545	179397545	T	-	DEL	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	frame_shift_del	c.96087	p.R32029fs	0.999	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
WSCD2	9671	genome.wustl.edu	37	12	108603963	108603963	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	12	108603963	108603963	C	T	SNP	WSCD2	NM_014653.2	human	genbank	58_37c	+1	validated	missense	c.563	p.T188M	0.085	HMMPfam_WSC,HMMSmart_SM00321	HMMPfam_WSC,HMMSmart_SM00321,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZWILCH	55055	genome.wustl.edu	37	15	66821838	66821838	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0IA-01A-11W-A050-09	TCGA-B6-A0IA-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f7e5ada6-8f53-4765-a874-5ee9d258ad6a	5b3fdff1-5930-419f-a5e4-46554ae2f80f	15	66821838	66821838	T	A	SNP	ZWILCH	NM_017975.3	human	genbank	58_37c	+1	validated	missense	c.1082	p.I361N	0.033	HMMPfam_DUF2352	HMMPfam_DUF2352	-	no_errors
