Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA1	19	genome.wustl.edu	37	9	107550711	107550711	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	9	107550711	107550711	C	G	SNP	ABCA1	NM_005502.2	human	genbank	58_37c	-1	reviewed	missense	c.6065	p.G2022A	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67645518	67645518	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	16	67645518	67645518	T	G	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	splice_site	c.781+2	e1+2	1.000	-	-	-	no_errors
CYP2D7P1	1564	genome.wustl.edu	37	22	42537329	42537329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	22	42537329	42537329	C	T	SNP	LOC100289204	XM_002343781.1	human	genbank	58_37c	+1	model	silent	c.618	p.V206	0.981	NULL	NULL	-	no_errors
FAM49B	51571	genome.wustl.edu	37	8	130891697	130891697	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	8	130891697	130891697	A	C	SNP	FAM49B	NM_016623.3	human	genbank	58_37c	-1	predicted	missense	c.11	p.L4R	1.000	NULL	HMMPfam_DUF1394	-	no_errors
FTMT	94033	genome.wustl.edu	37	5	121187814	121187814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	5	121187814	121187814	C	T	SNP	FTMT	NM_177478.1	human	genbank	58_37c	+1	validated	silent	c.156	p.A52	0.000	NULL	HMMPfam_Ferritin,superfamily_Ferritin/RR_like,PatternScan_FERRITIN_2,PatternScan_FERRITIN_1	-	no_errors
IL21	59067	genome.wustl.edu	37	4	123536991	123536991	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	4	123536991	123536991	G	T	SNP	IL21	NM_021803.2	human	genbank	58_37c	-1	validated	missense	c.206	p.T69K	0.772	NULL	NULL	-	no_errors
LRBA	987	genome.wustl.edu	37	4	151392804	151392804	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	4	151392804	151392804	C	T	SNP	LRBA	ENST00000509835	human	ensembl	58_37c	-1	known	missense	c.2597	p.S866N	0.992	HMMPfam_Beach,superfamily_BEACH domain	HMMPfam_Beach,superfamily_BEACH domain,HMMSmart_SM00320,HMMPfam_DUF1088,superfamily_WD40 repeat-like,HMMPfam_WD40,superfamily_PH domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MAP2K4	6416	genome.wustl.edu	37	17	12016657	12016663	+	Frame_Shift_Del	DEL	GGCTGTA	GGCTGTA	-	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	GGCTGTA	GGCTGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	17	12016657	12016663	GGCTGTA	-	DEL	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.793_799	p.C266fs	1.000:1.000:0.992:1.000:1.000:1.000:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MSTN	2660	genome.wustl.edu	37	2	190922215	190922215	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	2	190922215	190922215	G	A	SNP	MSTN	NM_005259.2	human	genbank	58_37c	-1	reviewed	silent	c.897	p.I299	0.992	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,PatternScan_EF_HAND_1,superfamily_Cystine-knot cytokines	-	no_errors
OR56B4	196335	genome.wustl.edu	37	11	6129525	6129526	+	In_Frame_Ins	INS	-	-	ACT	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	11	6129525	6129526	-	ACT	INS	OR56B4	NM_001005181.1	human	genbank	58_37c	+1	provisional	in_frame_ins	c.517_518	p.175in_frame_insY	0.000:0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PKN2	5586	genome.wustl.edu	37	1	89299057	89299057	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	89299057	89299057	C	T	SNP	PKN2	NM_006256.2	human	genbank	58_37c	+1	validated	nonsense	c.2881	p.R961*	1.000	HMMSmart_S_TK_X,HMMPfam_Pkinase_C	HMMSmart_C2,HMMPfam_HR1,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_C2_CaLB,superfamily_Kinase_like,HMMSmart_Hr1,superfamily_PKN_effector,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SLC26A4	5172	genome.wustl.edu	37	7	107342369	107342370	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	7	107342369	107342370	-	A	INS	SLC26A4	NM_000441.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1901_1902	p.E635fs	1.000:0.980	HMMPfam_STAS,superfamily_STAS	HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp,PatternScan_SLC26A	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16263797	16263797	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	16263797	16263797	C	G	SNP	SPEN	NM_015001.2	human	genbank	58_37c	+1	reviewed	missense	c.10166	p.S3389C	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SPOC,superfamily_SPOC-like,superfamily_SSF54928	-	no_errors
SPG20	23111	genome.wustl.edu	37	13	36886475	36886475	+	Silent	SNP	T	T	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	13	36886475	36886475	T	G	SNP	SPG20	NM_001142294.1	human	genbank	58_37c	-1	reviewed	silent	c.1623	p.V541	0.998	NULL	HMMPfam_MIT,HMMSmart_MIT	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115117430	115117431	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	12	115117430	115117431	-	T	INS	TBX3	NM_016569.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.744_743	p.Y248fs	1.000:1.000	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
THOC2	57187	genome.wustl.edu	37	X	122830573	122830573	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	X	122830573	122830573	G	C	SNP	THOC2	NM_001081550.1	human	genbank	58_37c	-1	validated	silent	c.465	p.L155	0.482	NULL	NULL	-	no_errors
USP36	57602	genome.wustl.edu	37	17	76799549	76799549	+	Missense_Mutation	SNP	C	C	T	rs140856412	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	17	76799549	76799549	C	T	SNP	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	missense	c.2728	p.A910T	0.000	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
UTP20	27340	genome.wustl.edu	37	12	101723202	101723202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	12	101723202	101723202	C	T	SNP	UTP20	NM_014503.2	human	genbank	58_37c	+1	validated	missense	c.3392	p.S1131L	1.000	superfamily_ARM repeat	HMMPfam_DRIM,superfamily_ARM repeat	-	no_errors
WNT2B	7482	genome.wustl.edu	37	1	113057615	113057615	+	Missense_Mutation	SNP	G	G	A	rs140445206	by1000genomes	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	113057615	113057615	G	A	SNP	WNT2B	NM_024494.2	human	genbank	58_37c	+1	reviewed	missense	c.302	p.R101Q	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZC3H18	124245	genome.wustl.edu	37	16	88690436	88690436	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	16	88690436	88690436	A	-	DEL	ZC3H18	NM_144604.3	human	genbank	58_37c	+1	validated	frame_shift_del	c.1864	p.K622fs	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	-	no_errors
