Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BMPER	168667	genome.wustl.edu	37	7	34125684	34125684	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	7	34125684	34125684	G	A	SNP	BMPER	NM_133468.3	human	genbank	58_37c	+1	validated	silent	c.1725	p.V575	0.997	HMMPfam_C8	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_C8,HMMPfam_TIL	-	no_errors
C2orf86	51057	genome.wustl.edu	37	2	63714608	63714608	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	2	63714608	63714608	G	A	SNP	C2orf86	NM_015910.4	human	genbank	58_37c	-1	validated	nonsense	c.181	p.Q61*	1.000	NULL	NULL	-	no_errors
CR2	1380	genome.wustl.edu	37	1	207644142	207644142	+	Missense_Mutation	SNP	G	G	C	rs183067414	by1000genomes	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	207644142	207644142	G	C	SNP	CR2	NM_001006658.2	human	genbank	58_37c	+1	reviewed	missense	c.1283	p.R428P	0.142	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
DNAH1	25981	genome.wustl.edu	37	3	52402833	52402833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	3	52402833	52402833	G	A	SNP	DNAH1	NM_015512.4	human	genbank	58_37c	+1	validated	missense	c.5842	p.D1948N	1.000	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117351189	117351189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	117351189	117351189	C	T	SNP	DSCAML1	NM_020693.2	human	genbank	58_37c	-1	provisional	silent	c.2934	p.T978	0.738	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
DSG3	1830	genome.wustl.edu	37	18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	18	29041208	29041208	G	T	SNP	DSG3	NM_001944.2	human	genbank	58_37c	+1	reviewed	nonsense	c.832	p.E278*	0.950	HMMPfam_Cadherin,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
FBN3	84467	genome.wustl.edu	37	19	8201277	8201277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	8201277	8201277	C	T	SNP	FBN3	NM_032447.3	human	genbank	58_37c	-1	reviewed	missense	c.1340	p.C447Y	1.000	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
GRIN2B	2904	genome.wustl.edu	37	12	13716941	13716941	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	12	13716941	13716941	G	A	SNP	GRIN2B	NM_000834.3	human	genbank	58_37c	-1	reviewed	silent	c.3231	p.A1077	0.015	HMMPfam_NMDAR2_C	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_NMDAR2_C,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
IFT172	26160	genome.wustl.edu	37	2	27667302	27667302	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	2	27667302	27667302	C	A	SNP	IFT172	NM_015662.1	human	genbank	58_37c	-1	validated	missense	c.5247	p.Q1749H	1.000	NULL	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like,superfamily_TPR-like,superfamily_HCP-like	-	no_errors
NTNG1	22854	genome.wustl.edu	37	1	107691296	107691296	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	107691296	107691296	G	T	SNP	NTNG1	NM_001113226.1	human	genbank	58_37c	+1	validated	missense	c.81	p.W27C	1.000	NULL	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,PatternScan_EGF_1,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
PKNOX2	63876	genome.wustl.edu	37	11	125237868	125237868	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	125237868	125237868	C	T	SNP	PKNOX2	NM_022062.2	human	genbank	58_37c	+1	validated	nonsense	c.214	p.R72*	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
SLC27A5	10998	genome.wustl.edu	37	19	59010502	59010502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	19	59010502	59010502	C	T	SNP	SLC27A5	NM_012254.2	human	genbank	58_37c	-1	reviewed	missense	c.1753	p.V585M	0.988	superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
SLC45A1	50651	genome.wustl.edu	37	1	8390663	8390663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	8390663	8390663	G	A	SNP	SLC45A1	NM_001080397.1	human	genbank	58_37c	+1	provisional	silent	c.1110	p.T370	0.941	HMMPfam_MFS_1	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
ST5	6764	genome.wustl.edu	37	11	8728753	8728753	+	Missense_Mutation	SNP	C	C	T	rs145873502	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	11	8728753	8728753	C	T	SNP	ST5	NM_005418.3	human	genbank	58_37c	-1	reviewed	missense	c.2450	p.R817H	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
SUSD4	55061	genome.wustl.edu	37	1	223400952	223400952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	1	223400952	223400952	C	T	SNP	SUSD4	NM_017982.3	human	genbank	58_37c	-1	validated	missense	c.1045	p.A349T	1.000	NULL	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
TCTN1	79600	genome.wustl.edu	37	12	111064227	111064227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	12	111064227	111064227	C	A	SNP	TCTN1	NM_001082538.2	human	genbank	58_37c	+1	reviewed	missense	c.402	p.N134K	0.967	HMMPfam_DUF1619	HMMPfam_DUF1619	-	no_errors
VPS4B	9525	genome.wustl.edu	37	18	61067316	61067316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	18	61067316	61067316	C	T	SNP	VPS4B	NM_004869.3	human	genbank	58_37c	-1	reviewed	missense	c.755	p.R252H	0.980	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_MIT,HMMSmart_SM00745,HMMPfam_Vps4_C,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZFHX3	463	genome.wustl.edu	37	16	72923665	72923665	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	8bc2c5ac-51b7-4140-9d6d-43ebfe0bde17	27facd2e-781d-4772-bb8c-7a1bc664c53e	16	72923665	72923665	A	T	SNP	ZFHX3	NM_006885.3	human	genbank	58_37c	-1	reviewed	missense	c.3413	p.I1138N	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
