Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATRN	8455	genome.wustl.edu	37	20	3559378	3559378	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	20	3559378	3559378	G	C	SNP	ATRN	NM_139321.2	human	genbank	58_37c	+1	reviewed	missense	c.2503	p.V835L	1.000	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_SM00423,HMMSmart_SM00181,HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type lectin-like,superfamily_EGF/Laminin	-	no_errors
C9orf61	9413	genome.wustl.edu	37	9	72002911	72002912	+	In_Frame_Ins	INS	-	-	GTTATA	rs139059659	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	9	72002911	72002912	-	GTTATA	INS	C9orf61	ENST00000377216	human	ensembl	58_37c	+1	known	in_frame_ins	c.55_56	p.20in_frame_insYS	0.000:0.000	NULL	NULL	-	no_errors
DSPP	1834	genome.wustl.edu	37	4	88533705	88533706	+	Frame_Shift_Ins	INS	-	-	GGAAAGAA	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	4	88533705	88533706	-	GGAAAGAA	INS	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.367_368	p.I124fs	0.964:0.102	NULL	NULL	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950880	16950880	+	RNA	SNP	T	T	C	rs1629127	byCluster;byFrequency;by2Hit2Allele;byHapmap	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	1	16950880	16950880	T	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.238	-	-	-	no_errors
ENSG00000246387	0	genome.wustl.edu	37	7	50680552	50680552	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	7	50680552	50680552	G	T	SNP	GRB10	NM_005311.4	human	genbank	58_37c	-1	reviewed	intronic	c.1096-16	e10-16	0.000	-	-	-	no_errors
FLII	2314	genome.wustl.edu	37	17	18157896	18157896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	17	18157896	18157896	G	A	SNP	FLII	NM_002018.2	human	genbank	58_37c	-1	reviewed	missense	c.514	p.R172C	1.000	HMMPfam_LRR_1,superfamily_SSF52058	HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF52047,superfamily_SSF52058,superfamily_SSF55753	-	no_errors
GPR149	344758	genome.wustl.edu	37	3	154055726	154055726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	3	154055726	154055726	C	T	SNP	GPR149	NM_001038705.1	human	genbank	58_37c	-1	provisional	missense	c.1958	p.R653H	1.000	NULL	NULL	-	no_errors
KLHL4	56062	genome.wustl.edu	37	X	86887332	86887332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	X	86887332	86887332	G	A	SNP	KLHL4	NM_057162.2	human	genbank	58_37c	+1	reviewed	missense	c.1447	p.G483R	1.000	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LINGO2	158038	genome.wustl.edu	37	9	27950338	27950338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	9	27950338	27950338	C	T	SNP	LINGO2	NM_152570.1	human	genbank	58_37c	-1	provisional	missense	c.332	p.R111H	1.000	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
MAGEE2	139599	genome.wustl.edu	37	X	75004148	75004148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	X	75004148	75004148	G	A	SNP	MAGEE2	NM_138703.4	human	genbank	58_37c	-1	validated	missense	c.739	p.L247F	0.018	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	12011150	12011150	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	17	12011150	12011150	A	G	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	missense	c.557	p.D186G	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PLCG1	5335	genome.wustl.edu	37	20	39802876	39802876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	20	39802876	39802876	G	A	SNP	PLCG1	NM_002660.2	human	genbank	58_37c	+1	reviewed	missense	c.3758	p.R1253H	1.000	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_PI-PLC-X,HMMSmart_PLCXc,HMMPfam_SH2,HMMSmart_SH2,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,HMMPfam_PH,HMMSmart_PH,superfamily_C2_CaLB,superfamily_PLC-like_Pdiesterase_TIM-brl,PatternScan_EF_HAND_1,superfamily_SSF47473,superfamily_SSF50729,superfamily_SSF55550	-	no_errors
SCFD1	23256	genome.wustl.edu	37	14	31118737	31118737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	31118737	31118737	C	T	SNP	SCFD1	NM_016106.2	human	genbank	58_37c	+1	validated	missense	c.617	p.A206V	1.000	HMMPfam_Sec1,superfamily_Sec1-like	HMMPfam_Sec1,superfamily_Sec1-like	-	no_errors
SERPINA9	327657	genome.wustl.edu	37	14	94933670	94933670	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	94933670	94933670	T	A	SNP	SERPINA9	NM_175739.3	human	genbank	58_37c	-1	validated	silent	c.732	p.P244	0.014	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	-	no_errors
SF3B2	10992	genome.wustl.edu	37	11	65819873	65819873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	65819873	65819873	C	T	SNP	SF3B2	NM_006842.2	human	genbank	58_37c	+1	reviewed	silent	c.18	p.P6	0.294	NULL	HMMPfam_SAP,HMMSmart_SM00513,HMMPfam_PSP,HMMSmart_SM00581,HMMPfam_DUF382	-	no_errors
SIGLEC15	284266	genome.wustl.edu	37	18	43422104	43422104	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	18	43422104	43422104	G	T	SNP	SIGLEC15	NM_213602.2	human	genbank	58_37c	+1	validated	missense	c.939	p.L313F	0.960	NULL	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
SLC9A3R2	9351	genome.wustl.edu	37	16	2086421	2086421	+	Missense_Mutation	SNP	C	C	T	rs139491786	by1000genomes	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	16	2086421	2086421	C	T	SNP	SLC9A3R2	NM_001130012.1	human	genbank	58_37c	+1	validated	missense	c.511	p.R171W	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_EBP50_C-term	-	no_errors
SNAPC1	6617	genome.wustl.edu	37	14	62229257	62229257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	62229257	62229257	G	A	SNP	SNAPC1	NM_003082.3	human	genbank	58_37c	+1	validated	missense	c.79	p.E27K	1.000	HMMPfam_SNAPc_SNAP43	HMMPfam_SNAPc_SNAP43	-	no_errors
ZNF143	7702	genome.wustl.edu	37	11	9494303	9494303	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	9494303	9494303	A	G	SNP	ZNF143	NM_003442.5	human	genbank	58_37c	+1	validated	silent	c.192	p.Q64	0.759	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF496	84838	genome.wustl.edu	37	1	247473058	247473058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	1	247473058	247473058	G	A	SNP	ZNF496	NM_032752.1	human	genbank	58_37c	-1	provisional	missense	c.835	p.R279C	0.001	HMMSmart_KRAB	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
