Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACPP	55	genome.wustl.edu	37	3	132047117	132047117	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	132047117	132047117	C	T	SNP	ACPP	NM_001134194.1	human	genbank	58_37c	+1	reviewed	missense	c.127	p.R43W	1.000	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_SSF53254	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,PatternScan_HIS_ACID_PHOSPHAT_2,superfamily_SSF53254	-	no_errors
AKAP6	9472	genome.wustl.edu	37	14	33004940	33004940	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	14	33004940	33004940	C	A	SNP	AKAP6	NM_004274.4	human	genbank	58_37c	+1	reviewed	missense	c.505	p.L169M	0.993	NULL	PatternScan_PFKB_KINASES_2,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
ALPK2	115701	genome.wustl.edu	37	18	56203182	56203182	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	18	56203182	56203182	C	G	SNP	ALPK2	NM_052947.3	human	genbank	58_37c	-1	validated	missense	c.4237	p.E1413Q	0.003	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
BACH2	60468	genome.wustl.edu	37	6	90660896	90660896	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	6	90660896	90660896	T	G	SNP	BACH2	NM_021813.2	human	genbank	58_37c	-1	validated	missense	c.929	p.D310A	1.000	NULL	HMMSmart_BTB,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,superfamily_BTB/POZ_fold,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors
C20orf177	63939	genome.wustl.edu	37	20	58519658	58519658	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	20	58519658	58519658	C	T	SNP	C20orf177	NM_022106.1	human	genbank	58_37c	+1	predicted	silent	c.660	p.S220	1.000	NULL	NULL	-	no_errors
C2orf47	79568	genome.wustl.edu	37	2	200820884	200820884	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	200820884	200820884	G	T	SNP	C2orf47	NM_024520.2	human	genbank	58_37c	+1	validated	missense	c.363	p.W121C	1.000	NULL	NULL	-	no_errors
CD226	10666	genome.wustl.edu	37	18	67562982	67562982	+	Missense_Mutation	SNP	C	C	T	rs146723371	byFrequency	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	18	67562982	67562982	C	T	SNP	CD226	NM_006566.2	human	genbank	58_37c	-1	reviewed	missense	c.682	p.A228T	0.002	HMMSmart_IGc2,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGc2,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
CDH18	1016	genome.wustl.edu	37	5	19483502	19483502	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	19483502	19483502	A	C	SNP	CDH18	NM_004934.3	human	genbank	58_37c	-1	reviewed	missense	c.1790	p.V597G	1.000	superfamily_Cadherin	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CGN	57530	genome.wustl.edu	37	1	151509266	151509266	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	151509266	151509266	C	T	SNP	CGN	NM_020770.2	human	genbank	58_37c	+1	validated	nonsense	c.3367	p.R1123*	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_tail_1	-	no_errors
CHD4	1108	genome.wustl.edu	37	12	6697539	6697539	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	6697539	6697539	G	A	SNP	CHD4	NM_001273.2	human	genbank	58_37c	-1	reviewed	silent	c.3390	p.G1130	1.000	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00249,PatternScan_DEAH_ATP_HELICASE,HMMPfam_DUF1086,HMMPfam_DUF1087,superfamily_FYVE/PHD zinc finger,HMMPfam_CHDCT2,HMMPfam_CHDNT,HMMSmart_SM00487,superfamily_Chromo domain-like,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CXorf66	347487	genome.wustl.edu	37	X	139038667	139038667	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	139038667	139038667	T	C	SNP	CXorf66	NM_001013403.2	human	genbank	58_37c	-1	validated	silent	c.474	p.P158	0.000	NULL	NULL	-	no_errors
DCAF11	80344	genome.wustl.edu	37	14	24586486	24586486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	14	24586486	24586486	C	T	SNP	DCAF11	NM_025230.4	human	genbank	58_37c	+1	reviewed	missense	c.295	p.P99S	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
EIF2B4	8890	genome.wustl.edu	37	2	27591877	27591877	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	27591877	27591877	G	A	SNP	EIF2B4	NM_172195.3	human	genbank	58_37c	-1	reviewed	silent	c.474	p.P158	0.941	NULL	HMMPfam_IF-2B,superfamily_NagB/RpiA/CoA transferase-like	-	no_errors
ENSG00000180923	0	genome.wustl.edu	37	11	6078962	6078962	+	Nonsense_Mutation	SNP	G	G	A	rs187496329	by1000genomes	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	11	6078962	6078962	G	A	SNP	OR52L2P	ENST00000316540	human	ensembl	58_37c	-1	known	nonsense	c.544	p.R182*	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
FILIP1L	11259	genome.wustl.edu	37	3	99567698	99567698	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	99567698	99567698	G	A	SNP	FILIP1L	NM_182909.2	human	genbank	58_37c	-1	validated	missense	c.2822	p.T941M	0.997	NULL	superfamily_Prefoldin,HMMPfam_CortBP2	-	no_errors
GEMIN5	25929	genome.wustl.edu	37	5	154282237	154282237	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	154282237	154282237	C	A	SNP	GEMIN5	NM_015465.3	human	genbank	58_37c	-1	validated	splice_site	c.2729-1	e20-1	1.000	-	-	-	no_errors
GORAB	92344	genome.wustl.edu	37	1	170521254	170521254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	170521254	170521254	C	T	SNP	GORAB	NM_152281.2	human	genbank	58_37c	+1	reviewed	missense	c.836	p.T279M	1.000	NULL	NULL	-	no_errors
HCN2	610	genome.wustl.edu	37	19	615906	615908	+	In_Frame_Del	DEL	TGG	TGG	-	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	19	615906	615908	TGG	-	DEL	HCN2	NM_001194.3	human	genbank	58_37c	+1	validated	in_frame_del	c.2102_2104	p.V702in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
HECW2	57520	genome.wustl.edu	37	2	197080599	197080599	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	197080599	197080599	C	A	SNP	HECW2	NM_020760.1	human	genbank	58_37c	-1	provisional	missense	c.4597	p.A1533S	0.980	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
HTR2A	3356	genome.wustl.edu	37	13	47466593	47466593	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	13	47466593	47466593	T	C	SNP	HTR2A	NM_000621.3	human	genbank	58_37c	-1	reviewed	missense	c.545	p.H182R	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LILRA2	11027	genome.wustl.edu	37	19	55086420	55086420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	19	55086420	55086420	C	T	SNP	LILRA2	NM_001130917.1	human	genbank	58_37c	+1	validated	missense	c.575	p.S192L	0.000	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MAMDC2	256691	genome.wustl.edu	37	9	72723399	72723399	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	9	72723399	72723399	G	T	SNP	MAMDC2	NM_153267.4	human	genbank	58_37c	+1	validated	splice_site	c.420+1	e3+1	1.000	-	-	-	no_errors
MMP16	4325	genome.wustl.edu	37	8	89086840	89086840	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	8	89086840	89086840	G	T	SNP	MMP16	NM_005941.4	human	genbank	58_37c	-1	reviewed	missense	c.1215	p.F405L	1.000	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120	"superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD-like,HMMSmart_SM00235,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MYH11	4629	genome.wustl.edu	37	16	15853452	15853452	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	16	15853452	15853452	G	T	SNP	MYH11	NM_001040114.1	human	genbank	58_37c	-1	reviewed	missense	c.1403	p.A468D	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NSD1	64324	genome.wustl.edu	37	5	176721812	176721812	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	176721812	176721812	G	A	SNP	NSD1	NM_022455.4	human	genbank	58_37c	+1	reviewed	silent	c.7443	p.E2481	0.991	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00249,HMMSmart_SM00508,HMMSmart_SM00570,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT,superfamily_SET domain	-	no_errors
NUP160	23279	genome.wustl.edu	37	11	47861966	47861966	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	11	47861966	47861966	C	A	SNP	NUP160	NM_015231.1	human	genbank	58_37c	-1	validated	missense	c.489	p.R163S	0.004	NULL	PatternScan_HIS_ACID_PHOSPHAT_1	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123615597	123615597	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	123615597	123615597	G	A	SNP	ODZ1	NM_014253.3	human	genbank	58_37c	-1	reviewed	silent	c.3913	p.L1305	0.972	superfamily_SSF101898	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196	-	no_errors
OR2L5	0	genome.wustl.edu	37	1	248185375	248185375	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	248185375	248185375	A	G	SNP	OR2L5	ENST00000355281	human	ensembl	58_37c	+1	known	silent	c.126	p.L42	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR4C16	219428	genome.wustl.edu	37	11	55340113	55340113	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	11	55340113	55340113	T	A	SNP	OR4C16	NM_001004701.2	human	genbank	58_37c	+1	validated	missense	c.510	p.N170K	0.998	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OSBPL7	114881	genome.wustl.edu	37	17	45895952	45895952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	17	45895952	45895952	C	T	SNP	OSBPL7	NM_145798.2	human	genbank	58_37c	-1	reviewed	missense	c.400	p.V134M	1.000	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_Oxysterol_BP,HMMPfam_PH,HMMSmart_PH,PatternScan_OSBP,superfamily_SSF50729	-	no_errors
PCDHA4	56144	genome.wustl.edu	37	5	140187582	140187582	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	140187582	140187582	C	T	SNP	PCDHA4	NM_018907.2	human	genbank	58_37c	+1	reviewed	silent	c.810	p.D270	0.989	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PKLR	5313	genome.wustl.edu	37	1	155265012	155265012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	155265012	155265012	C	T	SNP	PKLR	NM_000298.5	human	genbank	58_37c	-1	reviewed	missense	c.589	p.A197T	0.995	superfamily_PK beta-barrel domain-like,HMMPfam_PK,superfamily_Phosphoenolpyruvate/pyruvate domain	superfamily_PK beta-barrel domain-like,HMMPfam_PK,HMMPfam_PK_C,superfamily_PK C-terminal domain-like,superfamily_Phosphoenolpyruvate/pyruvate domain,PatternScan_PYRUVATE_KINASE	-	no_errors
PKP2	5318	genome.wustl.edu	37	12	32955486	32955486	+	Missense_Mutation	SNP	G	G	A	rs144018320	by1000genomes	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	32955486	32955486	G	A	SNP	PKP2	NM_004572.3	human	genbank	58_37c	-1	reviewed	missense	c.2150	p.P717L	0.993	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
PPIP5K2	0	genome.wustl.edu	37	5	102502945	102502945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	102502945	102502945	G	A	SNP	PPIP5K2	NM_015216.2	human	genbank	58_37c	+1	provisional	silent	c.1983	p.K661	1.000	HMMPfam_Acid_phosphat_A,superfamily_SSF53254	HMMPfam_Acid_phosphat_A,PatternScan_HIS_ACID_PHOSPHAT_1,superfamily_SSF53254,superfamily_SSF56059	-	no_errors
QPCTL	54814	genome.wustl.edu	37	19	46206220	46206220	+	Silent	SNP	G	G	A	rs112197334	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	19	46206220	46206220	G	A	SNP	QPCTL	NM_017659.3	human	genbank	58_37c	+1	validated	silent	c.1062	p.A354	0.000	HMMPfam_Peptidase_M28,superfamily_SSF53187	HMMPfam_Peptidase_M28,superfamily_SSF53187	-	no_errors
RBM8A	9939	genome.wustl.edu	37	1	145507682	145507682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	1	145507682	145507682	G	A	SNP	RBM8A	NM_005105.2	human	genbank	58_37c	+1	reviewed	missense	c.16	p.D6N	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
REG1A	5967	genome.wustl.edu	37	2	79349250	79349250	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	79349250	79349250	A	C	SNP	REG1A	NM_002909.4	human	genbank	58_37c	+1	reviewed	missense	c.320	p.K107T	0.953	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
RICTOR	253260	genome.wustl.edu	37	5	39002728	39002728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	39002728	39002728	C	T	SNP	RICTOR	NM_152756.3	human	genbank	58_37c	-1	validated	missense	c.301	p.A101T	1.000	superfamily_ARM repeat	HMMPfam_RasGEF_N,superfamily_ARM repeat	-	no_errors
SAFB2	9667	genome.wustl.edu	37	19	5587936	5587936	+	Missense_Mutation	SNP	C	C	T	rs180719319	by1000genomes	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	19	5587936	5587936	C	T	SNP	SAFB2	NM_014649.2	human	genbank	58_37c	-1	validated	missense	c.2581	p.A861T	0.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,superfamily_SSF68906	-	no_errors
SAGE1	55511	genome.wustl.edu	37	X	134990730	134990730	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	134990730	134990730	T	G	SNP	SAGE1	NM_018666.2	human	genbank	58_37c	+1	reviewed	missense	c.1395	p.I465M	0.005	NULL	NULL	-	no_errors
SERPINI1	5274	genome.wustl.edu	37	3	167510446	167510446	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	167510446	167510446	G	T	SNP	SERPINI1	NM_001122752.1	human	genbank	58_37c	+1	reviewed	missense	c.550	p.V184F	0.998	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	-	no_errors
SF3B1	23451	genome.wustl.edu	37	2	198266542	198266542	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	198266542	198266542	T	C	SNP	SF3B1	NM_012433.2	human	genbank	58_37c	-1	reviewed	missense	c.2294	p.Y765C	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_SF3b1,superfamily_ARM repeat	-	no_errors
SLC38A9	153129	genome.wustl.edu	37	5	54931405	54931405	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	5	54931405	54931405	A	G	SNP	SLC38A9	NM_173514.2	human	genbank	58_37c	-1	validated	silent	c.1248	p.P416	0.901	NULL	HMMPfam_Aa_trans	-	no_errors
SLC4A1AP	22950	genome.wustl.edu	37	2	27910885	27910885	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	2	27910885	27910885	C	A	SNP	SLC4A1AP	NM_018158.2	human	genbank	58_37c	+1	validated	nonsense	c.2201	p.S734*	1.000	NULL	HMMPfam_FHA,HMMSmart_FHA,HMMPfam_dsrm,HMMSmart_DSRM,superfamily_SMAD_FHA	-	no_errors
SLC9A7	84679	genome.wustl.edu	37	X	46491044	46491044	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	46491044	46491044	C	T	SNP	SLC9A7	NM_032591.1	human	genbank	58_37c	-1	reviewed	missense	c.1714	p.D572N	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
STYXL1	51657	genome.wustl.edu	37	7	75630222	75630222	+	Missense_Mutation	SNP	C	C	T	rs139694739	byFrequency	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	7	75630222	75630222	C	T	SNP	STYXL1	NM_016086.2	human	genbank	58_37c	-1	validated	missense	c.796	p.E266K	0.006	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
TBC1D5	9779	genome.wustl.edu	37	3	17415993	17415993	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	3	17415993	17415993	C	T	SNP	TBC1D5	NM_001134381.1	human	genbank	58_37c	-1	validated	nonsense	c.792	p.W264*	1.000	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	C	T	rs121912656	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	17	7577547	7577547	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.734	p.G245D	1.000	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRAPPC10	7109	genome.wustl.edu	37	21	45513998	45513998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	21	45513998	45513998	G	A	SNP	TRAPPC10	NM_003274.4	human	genbank	58_37c	+1	reviewed	missense	c.3052	p.E1018K	0.992	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
TSPAN8	7103	genome.wustl.edu	37	12	71519153	71519153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	12	71519153	71519153	C	T	SNP	TSPAN8	NM_004616.2	human	genbank	58_37c	-1	reviewed	silent	c.675	p.V225	0.998	HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin,PatternScan_TM4_1	-	no_errors
UBD	10537	genome.wustl.edu	37	6	29523762	29523762	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	6	29523762	29523762	A	G	SNP	UBD	NM_006398.3	human	genbank	58_37c	-1	validated	silent	c.393	p.I131	0.182	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	-	no_errors
ZFHX4	79776	genome.wustl.edu	37	8	77767190	77767190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	8	77767190	77767190	C	T	SNP	ZFHX4	NM_024721.4	human	genbank	58_37c	+1	validated	missense	c.7898	p.P2633L	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_Homeobox,HMMSmart_SM00389,HMMSmart_SM00451,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMSmart_SM00355,PatternScan_HOMEOBOX_1,PatternScan_SOMATOTROPIN_2,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF280C	55609	genome.wustl.edu	37	X	129349834	129349834	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HY-01A-11W-A071-09	TCGA-BH-A0HY-10A-02W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a63c2000-9e41-4897-8b01-4723c382096e	79cfdba0-e06f-488c-bd73-fbb1a87fb0b3	X	129349834	129349834	T	C	SNP	ZNF280C	NM_017666.4	human	genbank	58_37c	-1	validated	missense	c.1769	p.K590R	0.069	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
