Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTA2	0	genome.wustl.edu	37	10	90708572	90708572	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	90708572	90708572	C	T	SNP	ACTA2	NM_001141945.1	human	genbank	58_37c	-1	reviewed	missense	c.116	p.R39H	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
ALOX15B	0	genome.wustl.edu	37	17	7942523	7942523	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	7942523	7942523	G	A	SNP	ALOX15B	NM_001141.2	human	genbank	58_37c	+1	reviewed	missense	c.50	p.G17D	0.991	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)	HMMPfam_PLAT,HMMSmart_SM00308,PatternScan_IG_MHC,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_2,PatternScan_LIPOXYGENASE_1,superfamily_Lipoxigenase	-	no_errors
ASPH	0	genome.wustl.edu	37	8	62460693	62460693	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	62460693	62460693	C	T	SNP	ASPH	NM_004318.3	human	genbank	58_37c	-1	reviewed	silent	c.1701	p.V567	0.996	superfamily_SSF48452	HMMPfam_Asp_Arg_Hydrox,HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452,superfamily_SSF51197	-	no_errors
ATN1	0	genome.wustl.edu	37	12	7045008	7045008	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7045008	7045008	G	A	SNP	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	missense	c.578	p.G193E	0.623	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
ATN1	0	genome.wustl.edu	37	12	7045892	7045894	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7045892	7045894	CAG	-	DEL	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1462_1464	p.Q491in_frame_del	0.834:0.709:0.730	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
C1RL	0	genome.wustl.edu	37	12	7249748	7249748	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	7249748	7249748	G	A	SNP	C1RL	NM_016546.2	human	genbank	58_37c	-1	validated	missense	c.703	p.P235S	1.000	superfamily_Pept_Ser_Cys	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CCPG1	0	genome.wustl.edu	37	15	55653040	55653040	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	55653040	55653040	T	C	SNP	CCPG1	NM_004748.3	human	genbank	58_37c	-1	validated	missense	c.931	p.R311G	0.995	NULL	NULL	-	no_errors
DUS2L	0	genome.wustl.edu	37	16	68087509	68087509	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	68087509	68087509	T	A	SNP	DUS2L	NM_017803.3	human	genbank	58_37c	+1	provisional	missense	c.215	p.V72D	0.992	HMMPfam_Dus,superfamily_FMN-linked oxidoreductases	HMMPfam_dsrm,HMMSmart_SM00358,HMMPfam_Dus,PatternScan_UPF0034,superfamily_FMN-linked oxidoreductases,superfamily_dsRNA-binding domain-like	-	no_errors
EEF2K	0	genome.wustl.edu	37	16	22262009	22262009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	22262009	22262009	G	A	SNP	EEF2K	NM_013302.3	human	genbank	58_37c	+1	reviewed	missense	c.443	p.R148Q	1.000	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,superfamily_Kinase_like	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,HMMPfam_Sel1,superfamily_Kinase_like,superfamily_SSF81901	-	no_errors
EEF2K	0	genome.wustl.edu	37	16	22295264	22295264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	22295264	22295264	G	A	SNP	EEF2K	NM_013302.3	human	genbank	58_37c	+1	reviewed	missense	c.2125	p.A709T	1.000	NULL	HMMPfam_Alpha_kinase,HMMSmart_Alpha_kinase,HMMPfam_Sel1,superfamily_Kinase_like,superfamily_SSF81901	-	no_errors
ENSG00000198886	0	genome.wustl.edu	37	MT	10796	10796	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	MT	10796	10796	C	T	SNP	ENSG00000198886	ENST00000361381	human	ensembl	58_37c	+1	known	missense	c.37	p.P13S	NULL	HMMPfam_Oxidored_q5_N	HMMPfam_Oxidored_q5_N,HMMPfam_Oxidored_q1	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198938	0	genome.wustl.edu	37	MT	9343	9343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	MT	9343	9343	G	A	SNP	ENSG00000198938	ENST00000362079	human	ensembl	58_37c	+1	known	missense	c.137	p.G46D	NULL	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	HMMPfam_COX3,superfamily_Cytochrome c oxidase subunit III-like	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000210117	0	genome.wustl.edu	37	MT	5563	5563	+	RNA	SNP	G	A	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	MT	5563	5563	G	A	SNP	ENSG00000210117	ENST00000387382	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000214627	0	genome.wustl.edu	37	16	32005772	32005772	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	32005772	32005772	C	G	SNP	ENSG00000214627	ENST00000398685	human	ensembl	58_37c	+1	known	nonsense	c.1131	p.Y377*	1.000	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMSmart_PH,superfamily_Rho_GAP,superfamily_SSF50729	-	no_errors
ENSG00000229561	0	genome.wustl.edu	37	16	83984144	83984149	+	In_Frame_Del	DEL	ACACAC	ACACAC	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	ACACAC	ACACAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	83984144	83984149	ACACAC	-	DEL	ENSG00000229561	ENST00000412414	human	ensembl	58_37c	-1	known	in_frame_del	c.138_133	p.VC45in_frame_del	0.217:0.225:0.233:0.238:0.263:0.283	NULL	PatternScan_VWFC_1	-	no_stop_codon
ENSG00000249665	0	genome.wustl.edu	37	8	86786310	86786310	+	RNA	SNP	G	G	T	rs150998281	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	86786310	86786310	G	T	SNP	ENSG00000249665	ENST00000503540	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
FGFR1	0	genome.wustl.edu	37	8	38282147	38282147	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	38282147	38282147	G	A	SNP	FGFR1	NM_023110.2	human	genbank	58_37c	-1	reviewed	silent	c.816	p.N272	0.971	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FLJ39632	0	genome.wustl.edu	37	14	19890158	19890160	+	RNA	DEL	GCC	GCC	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	GCC	GCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	19890158	19890160	GCC	-	DEL	FLJ39632	XR_015133.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.049:0.048:0.047	-	-	-	no_errors
FOXD4L1	0	genome.wustl.edu	37	2	114257296	114257296	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	114257296	114257296	A	G	SNP	FOXD4L1	NM_012184.4	human	genbank	58_37c	+1	reviewed	missense	c.463	p.I155V	1.000	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Fork_head,HMMSmart_SM00339,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	233712227	233712229	ACA	-	DEL	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.057:0.094:0.124	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377029	168377029	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	168377029	168377029	G	A	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	missense	c.304	p.P102S	0.519	NULL	NULL	-	no_errors
HPX	0	genome.wustl.edu	37	11	6458782	6458800	+	Frame_Shift_Del	DEL	GCGGCCCAGCCATCTCAGG	GCGGCCCAGCCATCTCAGG	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	GCGGCCCAGCCATCTCAGG	GCGGCCCAGCCATCTCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	6458782	6458800	GCGGCCCAGCCATCTCAGG	-	DEL	HPX	NM_000613.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.591_573	p.L192fs	1.000:1.000:1.000:0.972:0.970:0.981:0.970:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.995:0.828:0.824:0.498:0.623	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX	superfamily_Hemopexin,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_HX	-	no_errors
INTS10	0	genome.wustl.edu	37	8	19677944	19677944	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	8	19677944	19677944	C	G	SNP	INTS10	NM_018142.2	human	genbank	58_37c	+1	validated	missense	c.356	p.T119R	1.000	NULL	NULL	-	no_errors
INTU	0	genome.wustl.edu	37	4	128637566	128637566	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	128637566	128637566	A	C	SNP	INTU	NM_015693.3	human	genbank	58_37c	+1	validated	missense	c.2804	p.K935T	1.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
ITGB1	0	genome.wustl.edu	37	10	33212629	33212629	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	10	33212629	33212629	A	G	SNP	ITGB1	NM_033667.2	human	genbank	58_37c	-1	reviewed	missense	c.826	p.F276L	1.000	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300	HMMSmart_VWA,HMMPfam_Integrin_beta,HMMSmart_INB,HMMSmart_PSI,HMMPfam_Integrin_B_tail,superfamily_Integrin_bsu_tail,PatternScan_EGF_1,HMMPfam_EGF_2,HMMPfam_Integrin_b_cyt,PatternScan_INTEGRIN_BETA,superfamily_SSF53300,superfamily_SSF57196,superfamily_SSF69179	-	no_errors
KDM5A	0	genome.wustl.edu	37	12	432949	432953	+	Splice_Site	DEL	TGAAA	TGAAA	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	TGAAA	TGAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	432949	432953	TGAAA	-	DEL	KDM5A	NM_001042603.1	human	genbank	58_37c	-1	reviewed	splice_site_del	c.1969-6_1969-2	e15-2	1.000:1.000:1.000:1.000:0.996	-	-	-	no_errors
KIFC1	0	genome.wustl.edu	37	6	33374639	33374639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	33374639	33374639	G	A	SNP	KIFC1	NM_002263.3	human	genbank	58_37c	+1	validated	missense	c.1964	p.R655H	0.997	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KLHL6	0	genome.wustl.edu	37	3	183209883	183209883	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	3	183209883	183209883	C	A	SNP	KLHL6	NM_130446.2	human	genbank	58_37c	-1	validated	silent	c.1698	p.R566	0.305	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LOC100129293	0	genome.wustl.edu	37	7	64030593	64030593	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	7	64030593	64030593	C	T	SNP	LOC100129293	XR_038218.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC100131851	0	genome.wustl.edu	37	7	39873126	39873127	+	In_Frame_Ins	INS	-	-	GCG	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	7	39873126	39873127	-	GCG	INS	LOC100131851	XM_001717865.2	human	genbank	58_37c	+1	model	in_frame_ins	c.371_372	p.125in_frame_ins	0.002:0.000	NULL	NULL	-	no_errors
LOC285696	0	genome.wustl.edu	37	5	17217184	17217184	+	RNA	SNP	A	T	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	17217184	17217184	A	T	SNP	LOC285696	NR_027253.1	human	genbank	58_37c	-1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
LRRC47	0	genome.wustl.edu	37	1	3697704	3697704	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	3697704	3697704	G	C	SNP	LRRC47	NM_020710.2	human	genbank	58_37c	-1	validated	missense	c.1700	p.P567R	0.999	NULL	HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_B3_4,superfamily_SSF52047	-	no_errors
MAN1B1	0	genome.wustl.edu	37	9	139997213	139997214	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	9	139997213	139997214	-	TG	INS	MAN1B1	ENST00000371587	human	ensembl	58_37c	+1	known	frame_shift_ins	c.2046_2047	p.L682fs	0.006:0.024	NULL	PatternScan_THIONIN,HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,PatternScan_PA2_HIS	-	no_stop_codon
MAP3K4	0	genome.wustl.edu	37	6	161519351	161519353	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	6	161519351	161519353	CTG	-	DEL	MAP3K4	NM_005922.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.857:0.937:0.950	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MMD	0	genome.wustl.edu	37	17	53491548	53491548	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	53491548	53491548	A	T	SNP	MMD	NM_012329.2	human	genbank	58_37c	-1	reviewed	silent	c.72	p.T24	0.968	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
MMP14	0	genome.wustl.edu	37	14	23314529	23314529	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	23314529	23314529	A	G	SNP	MMP14	NM_004995.2	human	genbank	58_37c	+1	reviewed	silent	c.1371	p.E457	1.000	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120	"superfamily_Hemopexin-like domain,HMMPfam_Peptidase_M10,PatternScan_CYSTEINE_SWITCH,HMMPfam_PG_binding_1,superfamily_PGBD-like,PatternScan_ZINC_PROTEASE,HMMSmart_SM00235,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
MYH2	0	genome.wustl.edu	37	17	10443330	10443330	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	10443330	10443330	C	T	SNP	MYH2	NM_001100112.1	human	genbank	58_37c	-1	reviewed	silent	c.1062	p.K354	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
MYO7B	0	genome.wustl.edu	37	2	128334255	128334255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	128334255	128334255	C	T	SNP	MYO7B	NM_001080527.1	human	genbank	58_37c	+1	provisional	missense	c.821	p.T274M	0.001	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_MyTH4,HMMSmart_SM00139,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_SH3_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NAA25	0	genome.wustl.edu	37	12	112509715	112509715	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	112509715	112509715	G	A	SNP	NAA25	NM_024953.3	human	genbank	58_37c	-1	reviewed	silent	c.1020	p.N340	0.108	HMMPfam_NatB_MDM20,superfamily_TPR-like	HMMPfam_NatB_MDM20,superfamily_TPR-like	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	12	124824739	124824740	-	GCCG	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.5521_5520	p.S1840fs	1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NFAT5	0	genome.wustl.edu	37	16	69725862	69725862	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	69725862	69725862	G	T	SNP	NFAT5	NM_138713.2	human	genbank	58_37c	+1	reviewed	missense	c.2134	p.A712S	1.000	NULL	HMMPfam_TIG,HMMSmart_SM00429,superfamily_p53-like transcription factors,HMMPfam_RHD,superfamily_E set domains	-	no_errors
NOP14	0	genome.wustl.edu	37	4	2945909	2945909	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	4	2945909	2945909	C	T	SNP	NOP14	NM_003703.1	human	genbank	58_37c	-1	validated	silent	c.1782	p.V594	1.000	HMMPfam_Nop14	HMMPfam_Nop14	-	no_errors
NPC1	0	genome.wustl.edu	37	18	21136530	21136530	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	18	21136530	21136530	A	T	SNP	NPC1	NM_000271.4	human	genbank	58_37c	-1	reviewed	missense	c.1003	p.L335M	0.002	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
NPTX2	0	genome.wustl.edu	37	7	98257809	98257809	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	7	98257809	98257809	T	C	SNP	NPTX2	NM_002523.2	human	genbank	58_37c	+1	reviewed	silent	c.1164	p.I388	0.333	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_Pentaxin,HMMSmart_SM00159,PatternScan_PENTAXIN,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
OR1Q1	0	genome.wustl.edu	37	9	125377241	125377241	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	9	125377241	125377241	C	T	SNP	OR1Q1	NM_012364.1	human	genbank	58_37c	+1	provisional	silent	c.225	p.S75	0.577	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2D2	0	genome.wustl.edu	37	11	6913561	6913561	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	11	6913561	6913561	T	G	SNP	OR2D2	NM_003700.1	human	genbank	58_37c	-1	provisional	silent	c.171	p.T57	0.996	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PASK	0	genome.wustl.edu	37	2	242065791	242065791	+	Missense_Mutation	SNP	C	C	G	rs145387091	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	2	242065791	242065791	C	G	SNP	PASK	NM_015148.2	human	genbank	58_37c	-1	validated	missense	c.2539	p.V847L	0.000	NULL	HMMSmart_SM00091,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_PAS,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
PCDHGA11	0	genome.wustl.edu	37	5	140802474	140802474	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	140802474	140802474	G	A	SNP	PCDHGA11	NM_018914.2	human	genbank	58_37c	+1	reviewed	silent	c.1680	p.A560	0.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PRX	0	genome.wustl.edu	37	19	40901699	40901699	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40901699	40901699	G	A	SNP	PRX	NM_181882.2	human	genbank	58_37c	-1	reviewed	silent	c.2560	p.L854	0.155	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PRX	0	genome.wustl.edu	37	19	40902909	40902909	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40902909	40902909	G	C	SNP	PRX	NM_181882.2	human	genbank	58_37c	-1	reviewed	silent	c.1350	p.V450	0.483	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PRX	0	genome.wustl.edu	37	19	40903119	40903119	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	40903119	40903119	G	C	SNP	PRX	NM_181882.2	human	genbank	58_37c	-1	reviewed	silent	c.1140	p.V380	0.426	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
PSMA3	0	genome.wustl.edu	37	14	58727696	58727696	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	58727696	58727696	C	T	SNP	PSMA3	NM_002788.2	human	genbank	58_37c	+1	reviewed	silent	c.435	p.D145	0.838	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
RBM23	0	genome.wustl.edu	37	14	23371255	23371256	+	In_Frame_Ins	INS	-	-	GGC	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	23371255	23371256	-	GGC	INS	RBM23	NM_001077351.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1180_1179	p.393in_frame_insA	0.736:0.712	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RFX2	0	genome.wustl.edu	37	19	6007781	6007781	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	6007781	6007781	G	A	SNP	RFX2	NM_000635.3	human	genbank	58_37c	-1	reviewed	silent	c.1167	p.F389	0.989	NULL	"HMMPfam_RFX_DNA_binding,HMMPfam_RFX1_trans_act,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RYR3	0	genome.wustl.edu	37	15	34105734	34105734	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	34105734	34105734	G	C	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.10456	p.A3486P	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
RYR3	0	genome.wustl.edu	37	15	34140623	34140623	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	15	34140623	34140623	G	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	splice_site	c.13628+1	e94+1	1.000	-	-	-	no_errors
SDCCAG1	0	genome.wustl.edu	37	14	50281529	50281529	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	50281529	50281529	T	C	SNP	SDCCAG1	NM_004713.3	human	genbank	58_37c	-1	validated	missense	c.1624	p.I542V	1.000	HMMPfam_DUF814	HMMPfam_DUF814,HMMPfam_FbpA	-	no_errors
SIN3B	0	genome.wustl.edu	37	19	16976441	16976442	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	16976441	16976442	-	C	INS	SIN3B	NM_015260.1	human	genbank	58_37c	+1	provisional	frame_shift_ins	c.1700_1701	p.V569fs	0.974:0.500	NULL	HMMPfam_PAH,superfamily_PAH2 domain,HMMPfam_HDAC_interact,HMMSmart_SM00761	-	no_errors
SLC16A4	0	genome.wustl.edu	37	1	110919758	110919758	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	1	110919758	110919758	A	C	SNP	SLC16A4	NM_004696.1	human	genbank	58_37c	-1	provisional	missense	c.1056	p.I352M	0.477	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLITRK1	0	genome.wustl.edu	37	13	84453897	84453897	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	13	84453897	84453897	G	A	SNP	SLITRK1	NM_052910.1	human	genbank	58_37c	-1	reviewed	silent	c.1746	p.Y582	0.990	NULL	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
SMEK1	0	genome.wustl.edu	37	14	91937280	91937280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	14	91937280	91937280	C	T	SNP	SMEK1	NM_032560.4	human	genbank	58_37c	-1	validated	missense	c.1522	p.E508K	1.000	superfamily_ARM-type_fold	HMMPfam_DUF625,superfamily_ARM-type_fold,superfamily_SSF50729	-	no_errors
SPIRE2	0	genome.wustl.edu	37	16	89924855	89924859	+	Frame_Shift_Del	DEL	GCCCC	GCCCC	-	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	GCCCC	GCCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	16	89924855	89924859	GCCCC	-	DEL	SPIRE2	NM_032451.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.1212_1216	p.P405fs	0.993:1.000:1.000:0.974:1.000	NULL	PatternScan_2FE2S_FER_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00750	-	no_errors
SYDE1	0	genome.wustl.edu	37	19	15224594	15224594	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	15224594	15224594	C	T	SNP	SYDE1	NM_033025.4	human	genbank	58_37c	+1	provisional	silent	c.2028	p.D676	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
TCOF1	0	genome.wustl.edu	37	5	149755799	149755799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	5	149755799	149755799	C	T	SNP	TCOF1	NM_001135243.1	human	genbank	58_37c	+1	reviewed	missense	c.2048	p.A683V	0.002	HMMPfam_Treacle	HMMPfam_Treacle,HMMSmart_SM00667	-	no_errors
TMEM106A	0	genome.wustl.edu	37	17	41365219	41365219	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	41365219	41365219	T	G	SNP	TMEM106A	NM_145041.1	human	genbank	58_37c	+1	provisional	missense	c.159	p.D53E	0.002	HMMPfam_DUF1356	HMMPfam_DUF1356	-	no_errors
TMTC4	0	genome.wustl.edu	37	13	101264696	101264696	+	Missense_Mutation	SNP	T	T	A	rs144940475	byFrequency	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	13	101264696	101264696	T	A	SNP	TMTC4	NM_032813.2	human	genbank	58_37c	-1	validated	missense	c.2020	p.M674L	1.000	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMPfam_DUF1736,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578551	7578551	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	17	7578551	7578551	A	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.379	p.S127P	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
ZNF208	0	genome.wustl.edu	37	19	22155521	22155521	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F6-01A-11D-A13L-09	TCGA-BH-A1F6-11B-94D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	34eb095d-3d44-4c59-9ef5-94592ba97900	9a86338f-4176-4931-ba32-457e92d4b0dc	19	22155521	22155521	G	A	SNP	ZNF208	NM_007153.3	human	genbank	58_37c	-1	provisional	missense	c.2015	p.T672I	0.989	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667	-	no_errors
