Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACSF2	0	genome.wustl.edu	37	17	48541257	48541257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	48541257	48541257	G	A	SNP	ACSF2	ENST00000510262	human	ensembl	58_37c	+1	known	missense	c.116	p.R39Q	0.000	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
AMBRA1	0	genome.wustl.edu	37	11	46568822	46568822	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	46568822	46568822	C	T	SNP	AMBRA1	NM_017749.2	human	genbank	58_37c	-1	validated	silent	c.219	p.V73	1.000	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
AP3B1	0	genome.wustl.edu	37	5	77524009	77524009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	5	77524009	77524009	G	A	SNP	AP3B1	NM_003664.3	human	genbank	58_37c	-1	reviewed	missense	c.334	p.L112F	1.000	HMMPfam_Adaptin_N,superfamily_ARM repeat	HMMPfam_Adaptin_N,superfamily_ARM repeat	-	no_errors
ATP2B2	0	genome.wustl.edu	37	3	10400565	10400565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	10400565	10400565	C	T	SNP	ATP2B2	NM_001001331.2	human	genbank	58_37c	-1	reviewed	missense	c.1946	p.R649Q	1.000	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
BCORL1	0	genome.wustl.edu	37	X	129150080	129150080	+	Missense_Mutation	SNP	C	C	T	rs144988023	byFrequency	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	129150080	129150080	C	T	SNP	BCORL1	NM_021946.3	human	genbank	58_37c	+1	reviewed	missense	c.3332	p.T1111M	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
CACNG7	0	genome.wustl.edu	37	19	54418757	54418757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	19	54418757	54418757	C	T	SNP	CACNG7	NM_031896.3	human	genbank	58_37c	+1	reviewed	missense	c.422	p.S141L	0.929	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
CD2	0	genome.wustl.edu	37	1	117311125	117311125	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	117311125	117311125	A	C	SNP	CD2	NM_001767.3	human	genbank	58_37c	+1	validated	missense	c.776	p.E259A	0.011	NULL	HMMPfam_C2-set,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
CILP	0	genome.wustl.edu	37	15	65496643	65496643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	15	65496643	65496643	C	T	SNP	CILP	NM_003613.3	human	genbank	58_37c	-1	reviewed	silent	c.882	p.L294	0.026	NULL	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin	-	no_errors
COL11A1	0	genome.wustl.edu	37	1	103461544	103461544	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	103461544	103461544	C	T	SNP	COL11A1	NM_080629.2	human	genbank	58_37c	-1	reviewed	splice_site	c.2331+1	e27+1	1.000	-	-	-	no_errors
CUZD1	0	genome.wustl.edu	37	10	124593252	124593252	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	10	124593252	124593252	C	T	SNP	CUZD1	NM_022034.4	human	genbank	58_37c	-1	provisional	nonsense	c.1587	p.W529*	1.000	NULL	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Zona_pellucida,HMMSmart_SM00241	-	no_errors
DCD	0	genome.wustl.edu	37	12	55039438	55039438	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	12	55039438	55039438	A	T	SNP	DCD	NM_053283.2	human	genbank	58_37c	-1	reviewed	missense	c.151	p.L51I	0.001	NULL	NULL	-	no_errors
DDX18	0	genome.wustl.edu	37	2	118582184	118582184	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	118582184	118582184	G	A	SNP	DDX18	NM_006773.3	human	genbank	58_37c	+1	reviewed	missense	c.1106	p.R369Q	1.000	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540	PatternScan_DEAD_ATP_HELICASE,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
DGKB	0	genome.wustl.edu	37	7	14880851	14880851	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	7	14880851	14880851	G	A	SNP	DGKB	NM_004080.2	human	genbank	58_37c	-1	reviewed	missense	c.38	p.S13L	1.000	superfamily_EF-hand	HMMPfam_DAGK_acc,HMMSmart_SM00045,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMSmart_SM00054,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_Cysteine-rich domain	-	no_errors
DIAPH2	0	genome.wustl.edu	37	X	96185793	96185793	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	96185793	96185793	T	A	SNP	DIAPH2	NM_006729.4	human	genbank	58_37c	+1	reviewed	missense	c.1040	p.I347K	1.000	HMMPfam_Drf_FH3	HMMSmart_SM00498,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DOCK7	0	genome.wustl.edu	37	1	62970400	62970400	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	62970400	62970400	G	C	SNP	DOCK7	ENST00000454575	human	ensembl	58_37c	-1	known	missense	c.2152	p.Q718E	0.996	NULL	HMMPfam_Ded_cyto	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
DPP4	0	genome.wustl.edu	37	2	162929936	162929936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	162929936	162929936	C	T	SNP	DPP4	NM_001935.3	human	genbank	58_37c	-1	reviewed	missense	c.67	p.V23M	1.000	NULL	HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,PatternScan_PRO_ENDOPEP_SER,superfamily_alpha/beta-Hydrolases,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain	-	no_errors
DST	0	genome.wustl.edu	37	6	56437729	56437729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	56437729	56437729	C	T	SNP	DST	NM_015548.4	human	genbank	58_37c	-1	reviewed	missense	c.5501	p.R1834Q	0.993	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
EP300	0	genome.wustl.edu	37	22	41545883	41545883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	22	41545883	41545883	C	T	SNP	EP300	NM_001429.3	human	genbank	58_37c	+1	reviewed	missense	c.2498	p.S833L	1.000	NULL	HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,superfamily_TAZ_finger,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMPfam_KIX,superfamily_KIX,superfamily_Nuc_recept_coact,HMMPfam_DUF906,HMMPfam_DUF902,HMMPfam_Creb_binding,PatternScan_BROMODOMAIN_1	-	no_errors
ERBB2	0	genome.wustl.edu	37	17	37880220	37880220	+	Missense_Mutation	SNP	T	T	C	rs121913470	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	37880220	37880220	T	C	SNP	ERBB2	NM_004448.2	human	genbank	58_37c	+1	reviewed	missense	c.2264	p.L755S	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_YLP,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_EF_HAND_1,superfamily_L domain-like	-	no_errors
F8	0	genome.wustl.edu	37	X	154182270	154182270	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	154182270	154182270	C	T	SNP	F8	NM_000132.3	human	genbank	58_37c	-1	reviewed	silent	c.1800	p.E600	1.000	superfamily_Cupredoxins	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,superfamily_Galactose-binding domain-like,HMMPfam_Cu-oxidase_2,HMMPfam_Cu-oxidase_3	-	no_errors
FAM45B	0	genome.wustl.edu	37	X	129629609	129629609	+	RNA	SNP	C	C	G	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	129629609	129629609	C	G	SNP	FAM45B	NR_027141.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.996	-	-	-	pseudogene
FAM78B	0	genome.wustl.edu	37	1	166135414	166135414	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	166135414	166135414	G	A	SNP	FAM78B	ENST00000435676	human	ensembl	58_37c	-1	known	missense	c.49	p.R17C	1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
FBXO3	0	genome.wustl.edu	37	11	33763554	33763554	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	33763554	33763554	G	C	SNP	FBXO3	NM_012175.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1316	p.S439*	0.996	NULL	HMMPfam_F-box,HMMSmart_SM00256,HMMPfam_DUF525,superfamily_ApaG-like (Pfam 04379),HMMPfam_SMI1_KNR4,superfamily_F-box domain	-	no_errors
FLJ43950	0	genome.wustl.edu	37	9	84532651	84532651	+	RNA	SNP	T	T	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	9	84532651	84532651	T	A	SNP	FLJ43950	NR_026851.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
GPR142	0	genome.wustl.edu	37	17	72366697	72366697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	72366697	72366697	C	T	SNP	GPR142	NM_181790.1	human	genbank	58_37c	+1	provisional	silent	c.396	p.H132	0.025	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GPR97	0	genome.wustl.edu	37	16	57710130	57710130	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	16	57710130	57710130	G	A	SNP	GPR97	NM_170776.4	human	genbank	58_37c	+1	validated	silent	c.225	p.E75	0.385	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
GPSM1	0	genome.wustl.edu	37	9	139229013	139229013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	9	139229013	139229013	G	A	SNP	GPSM1	NM_001145638.1	human	genbank	58_37c	+1	validated	missense	c.178	p.E60K	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_GoLoco,HMMSmart_SM00390,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
GRID1	0	genome.wustl.edu	37	10	87379751	87379751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	10	87379751	87379751	C	T	SNP	GRID1	NM_017551.2	human	genbank	58_37c	-1	reviewed	missense	c.2233	p.V745M	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HTR2A	0	genome.wustl.edu	37	13	47409635	47409635	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	13	47409635	47409635	C	A	SNP	HTR2A	NM_000621.3	human	genbank	58_37c	-1	reviewed	silent	c.753	p.V251	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
INPP4A	0	genome.wustl.edu	37	2	99204011	99204011	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	99204011	99204011	G	A	SNP	INPP4A	NM_001134224.1	human	genbank	58_37c	+1	reviewed	silent	c.2874	p.L958	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
KLHL17	0	genome.wustl.edu	37	1	897038	897038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	897038	897038	G	A	SNP	KLHL17	NM_198317.1	human	genbank	58_37c	+1	provisional	missense	c.397	p.V133M	1.000	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KRT6B	0	genome.wustl.edu	37	12	52844244	52844244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	12	52844244	52844244	C	T	SNP	KRT6B	NM_005555.3	human	genbank	58_37c	-1	reviewed	missense	c.701	p.R234H	0.801	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC100288142	0	genome.wustl.edu	37	1	148343792	148343792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	148343792	148343792	C	A	SNP	LOC100288142	XM_002344444.1	human	genbank	58_37c	-1	model	missense	c.295	p.V99F	0.000	NULL	HMMPfam_DUF1220	-	no_errors
LOC100288413	0	genome.wustl.edu	37	4	53610788	53610789	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	4	53610788	53610789	-	A	INS	LOC100288413	XM_002342451.1	human	genbank	58_37c	-1	model	frame_shift_ins	c.900_899	p.L300fs	0.001:0.001	NULL	NULL	-	no_errors
LOC643955	0	genome.wustl.edu	37	7	62758740	62758740	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	7	62758740	62758740	C	T	SNP	LOC643955	NR_003952.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.380	-	-	-	pseudogene
LOXL3	0	genome.wustl.edu	37	2	74763222	74763222	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	2	74763222	74763222	G	A	SNP	LOXL3	NM_032603.2	human	genbank	58_37c	-1	reviewed	silent	c.1149	p.L383	1.000	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Lysyl_oxidase,HMMSmart_SR,superfamily_Srcr_receptor,PatternScan_LYSYL_OXIDASE	-	no_errors
LRRC41	0	genome.wustl.edu	37	1	46751244	46751244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	1	46751244	46751244	C	T	SNP	LRRC41	NM_006369.4	human	genbank	58_37c	-1	validated	missense	c.1285	p.E429K	0.994	NULL	HMMSmart_SM00368,superfamily_RNI-like	-	no_errors
MBTD1	0	genome.wustl.edu	37	17	49297759	49297761	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	49297759	49297761	AGA	-	DEL	MBTD1	NM_017643.2	human	genbank	58_37c	-1	validated	in_frame_del	c.220_218	p.F73in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT	-	no_errors
MED12L	0	genome.wustl.edu	37	3	151075105	151075105	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	151075105	151075105	C	A	SNP	MED12L	NM_053002.4	human	genbank	58_37c	+1	reviewed	silent	c.2661	p.L887	0.999	NULL	HMMPfam_Med12	-	no_errors
MED23	0	genome.wustl.edu	37	6	131912640	131912640	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	131912640	131912640	G	A	SNP	MED23	NM_004830.2	human	genbank	58_37c	-1	reviewed	nonsense	c.3499	p.R1167*	1.000	NULL	NULL	-	no_errors
MLLT4	0	genome.wustl.edu	37	6	168352584	168352584	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	168352584	168352584	G	A	SNP	MLLT4	NM_001040001.1	human	genbank	58_37c	+1	validated	missense	c.4526	p.S1509N	1.000	NULL	HMMPfam_RA,HMMSmart_RA,HMMPfam_FHA,HMMSmart_FHA,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236	-	no_errors
MRPS26	0	genome.wustl.edu	37	20	3028487	3028487	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	20	3028487	3028487	T	G	SNP	MRPS26	NM_030811.3	human	genbank	58_37c	+1	reviewed	missense	c.590	p.V197G	0.961	NULL	NULL	-	no_errors
MXRA5	0	genome.wustl.edu	37	X	3238221	3238221	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	3238221	3238221	C	A	SNP	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	missense	c.5505	p.K1835N	0.234	NULL	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MYO1C	0	genome.wustl.edu	37	17	1374587	1374587	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	1374587	1374587	G	A	SNP	MYO1C	NM_001080779.1	human	genbank	58_37c	-1	reviewed	missense	c.2065	p.R689W	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_TH1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NLGN4X	0	genome.wustl.edu	37	X	5811184	5811184	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	5811184	5811184	T	A	SNP	NLGN4X	NM_020742.2	human	genbank	58_37c	-1	reviewed	missense	c.2125	p.R709W	0.452	NULL	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases	-	no_errors
NUDT12	0	genome.wustl.edu	37	5	102888118	102888118	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	5	102888118	102888118	C	T	SNP	NUDT12	NM_031438.2	human	genbank	58_37c	-1	validated	splice_site	c.1079-1	e5-1	1.000	-	-	-	no_errors
OR4C15	0	genome.wustl.edu	37	11	55322666	55322666	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	55322666	55322666	C	A	SNP	OR4C15	NM_001001920.1	human	genbank	58_37c	+1	provisional	missense	c.884	p.S295Y	0.998	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_LECTIN_LEGUME_ALPHA,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCBP2	0	genome.wustl.edu	37	12	53856277	53856278	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	12	53856277	53856278	-	C	INS	PCBP2	NM_005016.5	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.517_518	p.K176fs	1.000:1.000	superfamily_SSF54791	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKD1L3	0	genome.wustl.edu	37	16	71967361	71967361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	16	71967361	71967361	C	T	SNP	PKD1L3	ENST00000335106	human	ensembl	58_37c	-1	known	missense	c.4882	p.V1628I	0.036	HMMPfam_Ion_trans	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Ion_trans,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),superfamily_C-type lectin-like	-	no_errors
PNLDC1	0	genome.wustl.edu	37	6	160232782	160232782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	160232782	160232782	C	T	SNP	PNLDC1	NM_173516.1	human	genbank	58_37c	+1	provisional	silent	c.870	p.L290	1.000	HMMPfam_CAF1,superfamily_Ribonuclease H-like	HMMPfam_CAF1,superfamily_Ribonuclease H-like	-	no_errors
RPS4X	0	genome.wustl.edu	37	X	71494957	71494957	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	71494957	71494957	G	C	SNP	RPS4X	NM_001007.4	human	genbank	58_37c	-1	reviewed	missense	c.306	p.I102M	1.000	HMMSmart_SM00363,HMMPfam_Ribosomal_S4e	HMMPfam_S4,HMMSmart_SM00363,HMMPfam_KOW,HMMPfam_RS4NT,HMMPfam_Ribosomal_S4e,PatternScan_RIBOSOMAL_S4E	-	no_errors
SEC23IP	0	genome.wustl.edu	37	10	121663612	121663612	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	10	121663612	121663612	G	C	SNP	SEC23IP	NM_007190.2	human	genbank	58_37c	+1	reviewed	missense	c.924	p.E308D	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_DDHD,superfamily_SAM/Pointed domain	-	no_errors
SLC22A16	0	genome.wustl.edu	37	6	110778105	110778105	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	6	110778105	110778105	T	G	SNP	SLC22A16	NM_033125.2	human	genbank	58_37c	-1	provisional	missense	c.169	p.N57H	1.000	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLFN14	0	genome.wustl.edu	37	17	33875444	33875444	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	33875444	33875444	C	T	SNP	SLFN14	NM_001129820.1	human	genbank	58_37c	-1	provisional	silent	c.2553	p.P851	0.011	NULL	HMMPfam_AAA_4	-	no_errors
SMG1	0	genome.wustl.edu	37	16	18839447	18839447	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	16	18839447	18839447	G	T	SNP	SMG1	NM_015092.4	human	genbank	58_37c	-1	reviewed	nonsense	c.9647	p.S3216*	1.000	NULL	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2	-	no_errors
SORL1	0	genome.wustl.edu	37	11	121393316	121393316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	121393316	121393316	C	T	SNP	SORL1	NM_003105.4	human	genbank	58_37c	+1	reviewed	missense	c.1426	p.H476Y	1.000	HMMSmart_SM00602,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_COPPER_BLUE,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00602,superfamily_Fibronectin type III,PatternScan_EGF_2,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,superfamily_YWTD domain	-	no_errors
VPRBP	0	genome.wustl.edu	37	3	51458364	51458364	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	51458364	51458364	T	C	SNP	VPRBP	NM_014703.2	human	genbank	58_37c	-1	validated	missense	c.1901	p.N634S	1.000	superfamily_ARM repeat	HMMSmart_SM00667,superfamily_WD40 repeat-like,HMMPfam_LisH,superfamily_ARM repeat	-	no_errors
WEE1	0	genome.wustl.edu	37	11	9608368	9608368	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	11	9608368	9608368	G	T	SNP	WEE1	NM_003390.3	human	genbank	58_37c	+1	reviewed	missense	c.1752	p.L584F	1.000	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
XPC	0	genome.wustl.edu	37	3	14197851	14197851	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	3	14197851	14197851	C	T	SNP	XPC	NM_004628.4	human	genbank	58_37c	-1	reviewed	missense	c.2017	p.E673K	1.000	HMMPfam_BHD_1	HMMPfam_Rad4,HMMPfam_BHD_1,HMMPfam_BHD_2,HMMPfam_BHD_3	-	no_errors
ZBTB4	0	genome.wustl.edu	37	17	7370012	7370012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	17	7370012	7370012	C	T	SNP	ZBTB4	NM_001128833.1	human	genbank	58_37c	-1	validated	missense	c.109	p.G37R	0.992	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFP14	0	genome.wustl.edu	37	19	36832278	36832278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	19	36832278	36832278	C	T	SNP	ZFP14	NM_020917.1	human	genbank	58_37c	-1	provisional	missense	c.450	p.M150I	0.009	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZMYM3	0	genome.wustl.edu	37	X	70462884	70462884	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	X	70462884	70462884	G	A	SNP	ZMYM3	NM_005096.3	human	genbank	58_37c	-1	reviewed	silent	c.3483	p.Y1161	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
ZNF518A	0	genome.wustl.edu	37	10	97917739	97917746	+	Frame_Shift_Del	DEL	TCAGCAAC	TCAGCAAC	-	novel	unknown	TCGA-D8-A1XM-01A-21D-A14K-09	TCGA-D8-A1XM-10A-01D-A14K-09	TCAGCAAC	TCAGCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	07418962-0a82-43a2-a66f-614903ea8380	647a05dc-3959-4997-a775-7b6a2c4cba59	10	97917739	97917746	TCAGCAAC	-	DEL	ZNF518A	ENST00000371192	human	ensembl	58_37c	+1	known	frame_shift_del	c.1660_1667	p.S554fs	0.195:0.231:0.158:0.000:0.001:0.001:0.000:0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
