Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ASZ1	0	genome.wustl.edu	37	7	117022190	117022190	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	7	117022190	117022190	G	C	SNP	ASZ1	NM_130768.2	human	genbank	58_37c	-1	validated	missense	c.821	p.T274R	1.000	superfamily_SAM_homology,HMMPfam_SAM_2	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_SAM_homology,HMMPfam_SAM_2	-	no_errors
C21orf56	0	genome.wustl.edu	37	21	47602541	47602541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	21	47602541	47602541	C	T	SNP	C21orf56	NM_001142854.1	human	genbank	58_37c	-1	validated	missense	c.190	p.G64R	0.472	NULL	NULL	-	no_errors
CDK10	0	genome.wustl.edu	37	16	89762012	89762012	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	16	89762012	89762012	C	A	SNP	CDK10	NM_052988.4	human	genbank	58_37c	+1	reviewed	missense	c.995	p.P332Q	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CEACAM19	0	genome.wustl.edu	37	19	45175930	45175930	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	19	45175930	45175930	C	G	SNP	CEACAM19	NM_020219.3	human	genbank	58_37c	+1	validated	missense	c.118	p.P40A	1.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
COL6A6	0	genome.wustl.edu	37	3	130383928	130383928	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	3	130383928	130383928	G	A	SNP	COL6A6	NM_001102608.1	human	genbank	58_37c	+1	provisional	missense	c.6584	p.R2195Q	0.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
DDX11	0	genome.wustl.edu	37	12	31242861	31242861	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	12	31242861	31242861	A	C	SNP	DDX11	NM_152438.1	human	genbank	58_37c	+1	reviewed	silent	c.922	p.R308	0.001	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000224343	0	genome.wustl.edu	37	6	160132356	160132373	+	In_Frame_Del	DEL	CTCACACTGCTCTGACCT	CTCACACTGCTCTGACCT	-	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	CTCACACTGCTCTGACCT	CTCACACTGCTCTGACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	6	160132356	160132373	CTCACACTGCTCTGACCT	-	DEL	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	in_frame_del	c.470_453	p.QSSVSG153in_frame_del	0.042:0.038:0.034:0.030:0.024:0.019:0.019:0.019:0.018:0.017:0.015:0.014:0.011:0.008:0.005:0.005:0.004:0.005	NULL	NULL	-	no_start_codon
ENSG00000232657	0	genome.wustl.edu	37	4	49110501	49110501	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	4	49110501	49110501	T	A	SNP	ENSG00000232657	ENST00000417204	human	ensembl	58_37c	-1	known	missense	c.1	p.M1L	0.000	NULL	NULL	-	no_stop_codon
FAM113A	0	genome.wustl.edu	37	20	2820525	2820525	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	20	2820525	2820525	G	A	SNP	FAM113A	NM_022760.3	human	genbank	58_37c	-1	predicted	missense	c.34	p.R12C	0.805	NULL	superfamily_SGNH hydrolase	-	no_errors
GK3P	0	genome.wustl.edu	37	4	166199693	166199693	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	4	166199693	166199693	C	T	SNP	GK3P	NR_026575.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
GLI3	0	genome.wustl.edu	37	7	42018291	42018306	+	Frame_Shift_Del	DEL	CAGCCACCTGCACACG	CAGCCACCTGCACACG	-	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	CAGCCACCTGCACACG	CAGCCACCTGCACACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	7	42018291	42018306	CAGCCACCTGCACACG	-	DEL	GLI3	NM_000168.5	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1554_1539	p.F513fs	0.730:0.996:1.000:1.000:1.000:1.000:0.946:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.985	HMMPfam_zf-C2H2,HMMSmart_SM00355	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	15	23685826	23685828	TCT	-	DEL	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_del	c.1585_1583	p.K528in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
LOC441481	0	genome.wustl.edu	37	X	13397328	13397328	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	X	13397328	13397328	C	T	SNP	LOC441481	XR_038530.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.995	-	-	-	pseudogene
LOC644256	0	genome.wustl.edu	37	17	44337122	44337122	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	17	44337122	44337122	C	T	SNP	LOC644256	XR_017527.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.974	-	-	-	pseudogene
MAPK14	0	genome.wustl.edu	37	6	36041850	36041850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	6	36041850	36041850	G	A	SNP	MAPK14	NM_001315.2	human	genbank	58_37c	+1	reviewed	missense	c.472	p.V158M	1.000	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MIR516B1	0	genome.wustl.edu	37	19	54240127	54240127	+	RNA	SNP	A	A	C	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	19	54240127	54240127	A	C	SNP	MIR516B1	ENST00000385211	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors
MYO5B	0	genome.wustl.edu	37	18	47480795	47480795	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	18	47480795	47480795	C	A	SNP	MYO5B	NM_001080467.2	human	genbank	58_37c	-1	reviewed	missense	c.1556	p.G519V	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_DIL,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MZF1	0	genome.wustl.edu	37	19	59073812	59073813	+	In_Frame_Ins	INS	-	-	TGAGGCGCTGGC	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	19	59073812	59073813	-	TGAGGCGCTGGC	INS	MZF1	NM_003422.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.1832_1831	p.611in_frame_insSQRL	0.983:0.909	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
OTUD4	0	genome.wustl.edu	37	4	146058902	146058902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	4	146058902	146058902	C	T	SNP	OTUD4	NM_001102653.1	human	genbank	58_37c	-1	reviewed	missense	c.2830	p.A944T	1.000	NULL	HMMPfam_OTU,superfamily_SSF54001	-	no_errors
RNF126P1	0	genome.wustl.edu	37	17	55123867	55123868	+	RNA	INS	-	-	GACT	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	17	55123867	55123868	-	GACT	INS	RNF126P1	NR_002818.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.002:0.004	-	-	-	pseudogene
RP1L1	0	genome.wustl.edu	37	8	10467629	10467630	+	In_Frame_Ins	INS	-	-	TTC	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	8	10467629	10467630	-	TTC	INS	RP1L1	NM_178857.5	human	genbank	58_37c	-1	validated	in_frame_ins	c.3979_3978	p.1326in_frame_insE	0.000:0.000	NULL	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
SNORD83A	0	genome.wustl.edu	37	22	39711279	39711286	+	RNA	DEL	CCAGCGCT	CCAGCGCT	-	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	CCAGCGCT	CCAGCGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	22	39711279	39711286	CCAGCGCT	-	DEL	SNORD83A	NR_000027.1	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:0.980:0.101	-	-	-	no_errors
ZNF324	0	genome.wustl.edu	37	19	58982851	58982851	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27E-01A-11D-A16D-09	TCGA-D8-A27E-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	eab47cbb-eab0-4dd6-9cd0-f2700e5b6227	bcaf419b-3c04-4bb8-84f1-e8bf4bf6895d	19	58982851	58982851	A	G	SNP	ZNF324	NM_014347.1	human	genbank	58_37c	+1	provisional	missense	c.992	p.H331R	0.990	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
