Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKAP9	0	genome.wustl.edu	37	7	91641818	91641818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	7	91641818	91641818	C	T	SNP	AKAP9	NM_005751.4	human	genbank	58_37c	+1	reviewed	missense	c.3394	p.R1132C	1.000	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	-	no_errors
ASXL1	0	genome.wustl.edu	37	20	31024797	31024797	+	Missense_Mutation	SNP	T	T	C	rs150925693	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	20	31024797	31024797	T	C	SNP	ASXL1	NM_015338.5	human	genbank	58_37c	+1	reviewed	missense	c.4282	p.S1428P	0.974	NULL	NULL	-	no_errors
AXL	0	genome.wustl.edu	37	19	41743948	41743948	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	19	41743948	41743948	C	T	SNP	AXL	NM_021913.3	human	genbank	58_37c	+1	reviewed	missense	c.883	p.R295W	0.280	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_V-set,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
CARD6	0	genome.wustl.edu	37	5	40853931	40853931	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	5	40853931	40853931	C	A	SNP	CARD6	NM_032587.3	human	genbank	58_37c	+1	reviewed	missense	c.2497	p.P833T	0.000	NULL	HMMPfam_CARD,superfamily_DEATH_like	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56650054	56650055	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	3	56650054	56650055	-	CTC	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.1816_1817	p.607in_frame_insP	0.797:0.972	NULL	NULL	-	no_errors
CLCF1	0	genome.wustl.edu	37	11	67132963	67132963	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	11	67132963	67132963	C	T	SNP	CLCF1	NM_013246.2	human	genbank	58_37c	-1	reviewed	missense	c.322	p.E108K	0.999	superfamily_4_helix_cytokine,HMMPfam_PRF	superfamily_4_helix_cytokine,HMMPfam_PRF	-	no_errors
CROCCL1	0	genome.wustl.edu	37	1	16946417	16946417	+	RNA	SNP	G	G	C	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	16946417	16946417	G	C	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.997	-	-	-	pseudogene
DDX12	0	genome.wustl.edu	37	12	9574020	9574020	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	12	9574020	9574020	T	C	SNP	DDX12	ENST00000432996	human	ensembl	58_37c	-1	known	silent	c.2016	p.L672	1.000	NULL	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88536014	88536031	+	In_Frame_Del	DEL	AGCAGTGACAGCAGCAAC	AGCAGTGACAGCAGCAAC	-	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	AGCAGTGACAGCAGCAAC	AGCAGTGACAGCAGCAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	4	88536014	88536031	AGCAGTGACAGCAGCAAC	-	DEL	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2200_2217	p.SSNSSD737in_frame_del	0.982:0.984:0.971:0.984:0.992:0.996:0.999:0.998:0.991:0.966:0.949:0.901:0.734:0.619:0.291:0.240:0.238:0.228	NULL	NULL	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13827	13827	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	MT	13827	13827	A	T	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	silent	c.1491	p.G497	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
EPRS	0	genome.wustl.edu	37	1	220170582	220170582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	220170582	220170582	C	T	SNP	EPRS	NM_004446.2	human	genbank	58_37c	-1	reviewed	missense	c.2284	p.D762N	0.999	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_S15/NS1_bind	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_2b,HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd,superfamily_S15/NS1_bind,superfamily_GST_C_like,superfamily_Ribosomal_L25rel,HMMPfam_ProRS-C_1,superfamily_Pro-tRNA_synth_II_C,HMMPfam_tRNA-synt_1c,HMMPfam_tRNA-synt_1c_C,superfamily_SSF52374,superfamily_SSF55681	-	no_errors
ESRRB	0	genome.wustl.edu	37	14	76964669	76964669	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	14	76964669	76964669	C	T	SNP	ESRRB	NM_004452.3	human	genbank	58_37c	+1	reviewed	silent	c.1170	p.G390	1.000	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
FAM13C	0	genome.wustl.edu	37	10	61028447	61028447	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	10	61028447	61028447	G	A	SNP	FAM13C	NM_001143773.1	human	genbank	58_37c	-1	validated	missense	c.559	p.R187W	0.998	NULL	NULL	-	no_errors
FBXO33	0	genome.wustl.edu	37	14	39870722	39870722	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	14	39870722	39870722	C	T	SNP	FBXO33	NM_203301.2	human	genbank	58_37c	-1	validated	missense	c.1054	p.D352N	1.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383	-	no_errors
GOLGA8A	0	genome.wustl.edu	37	15	34676192	34676192	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	15	34676192	34676192	C	T	SNP	GOLGA8A	NM_181077.3	human	genbank	58_37c	-1	reviewed	silent	c.624	p.E208	0.015	NULL	NULL	-	no_errors
HTR1B	0	genome.wustl.edu	37	6	78172317	78172317	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	6	78172317	78172317	G	C	SNP	HTR1B	NM_000863.1	human	genbank	58_37c	-1	provisional	silent	c.804	p.T268	0.994	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
INPP1	0	genome.wustl.edu	37	2	191236038	191236038	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	2	191236038	191236038	A	G	SNP	INPP1	NM_001128928.1	human	genbank	58_37c	+1	reviewed	silent	c.1110	p.G370	0.935	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase	HMMPfam_Inositol_P,PatternScan_IMP_2,PatternScan_IMP_1,superfamily_Carbohydrate phosphatase	-	no_errors
KIAA1109	0	genome.wustl.edu	37	4	123254965	123254965	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	4	123254965	123254965	G	T	SNP	KIAA1109	NM_015312.3	human	genbank	58_37c	+1	reviewed	splice_site	c.11646+1	e66+1	1.000	-	-	-	no_errors
LARP4B	0	genome.wustl.edu	37	10	882385	882385	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	10	882385	882385	G	T	SNP	LARP4B	NM_015155.1	human	genbank	58_37c	-1	provisional	nonsense	c.708	p.C236*	1.000	"superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
LOC100131360	0	genome.wustl.edu	37	3	195723918	195723919	+	RNA	INS	-	-	G	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	3	195723918	195723919	-	G	INS	LOC100131360	XR_037733.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.999:1.000	-	-	-	pseudogene
LOC100131754	0	genome.wustl.edu	37	1	565286	565286	+	RNA	SNP	C	T	T	rs140432825	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	565286	565286	C	T	SNP	LOC100131754	XR_078214.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC100132306	0	genome.wustl.edu	37	1	149647531	149647531	+	RNA	SNP	A	A	G	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	149647531	149647531	A	G	SNP	LOC100132306	XR_037921.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC283685	0	genome.wustl.edu	37	15	23686010	23686011	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	15	23686010	23686011	-	CTC	INS	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_ins	c.1438_1437	p.479in_frame_insE	0.002:0.005	NULL	NULL	-	no_errors
LOC400986	0	genome.wustl.edu	37	2	96581796	96581796	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	2	96581796	96581796	G	T	SNP	LOC400986	XM_001717763.2	human	genbank	58_37c	-1	model	missense	c.1538	p.T513K	0.008	NULL	NULL	-	no_errors
MAPK4	0	genome.wustl.edu	37	18	48190626	48190626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	18	48190626	48190626	G	A	SNP	MAPK4	NM_002747.3	human	genbank	58_37c	+1	reviewed	missense	c.298	p.V100M	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MOV10L1	0	genome.wustl.edu	37	22	50563962	50563962	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	22	50563962	50563962	C	T	SNP	MOV10L1	NM_018995.2	human	genbank	58_37c	+1	reviewed	missense	c.1711	p.P571S	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100647338	100647338	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	7	100647338	100647338	C	A	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.13923	p.D4641E	0.058	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MXRA5	0	genome.wustl.edu	37	X	3235330	3235330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	X	3235330	3235330	G	A	SNP	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	missense	c.6392	p.A2131V	0.978	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
PCDHAC2	0	genome.wustl.edu	37	5	140348477	140348477	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	5	140348477	140348477	T	C	SNP	PCDHAC2	NM_018899.5	human	genbank	58_37c	+1	reviewed	missense	c.2126	p.I709T	1.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PLCB3	0	genome.wustl.edu	37	11	64030194	64030194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	11	64030194	64030194	G	A	SNP	PLCB3	NM_000932.2	human	genbank	58_37c	+1	reviewed	missense	c.2269	p.D757N	1.000	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PLC-beta_C,HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,superfamily_EF-hand	-	no_errors
PLDN	0	genome.wustl.edu	37	15	45884474	45884474	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	15	45884474	45884474	C	G	SNP	PLDN	NM_012388.2	human	genbank	58_37c	+1	reviewed	missense	c.224	p.T75R	1.000	NULL	NULL	-	no_errors
PLXNB3	0	genome.wustl.edu	37	X	153043430	153043430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	X	153043430	153043430	C	T	SNP	PLXNB3	ENST00000448847	human	ensembl	58_37c	+1	known	missense	c.200	p.P67L	0.868	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RGPD4	0	genome.wustl.edu	37	2	108487890	108487890	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	2	108487890	108487890	C	G	SNP	RGPD4	NM_182588.2	human	genbank	58_37c	+1	validated	missense	c.3430	p.L1144V	0.988	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip,HMMPfam_TPR_1,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
SLC45A3	0	genome.wustl.edu	37	1	205632534	205632534	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	1	205632534	205632534	C	A	SNP	SLC45A3	NM_033102.2	human	genbank	58_37c	-1	validated	missense	c.385	p.V129L	0.980	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SPAG8	0	genome.wustl.edu	37	9	35811883	35811884	+	Missense_Mutation	DNP	CC	CC	TA	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	9	35811883	35811884	CC	TA	DNP	SPAG8	NM_172312.1	human	genbank	58_37c	-1	reviewed	missense	c.160_159	p.A54T	0.634:0.556	NULL	NULL	-	no_errors
TAOK1	0	genome.wustl.edu	37	17	27822641	27822641	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	17	27822641	27822641	G	T	SNP	TAOK1	NM_020791.1	human	genbank	58_37c	+1	validated	missense	c.895	p.D299Y	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TLL1	0	genome.wustl.edu	37	4	166999053	166999053	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-D8-A27R-01A-11D-A16D-09	TCGA-D8-A27R-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	27741c13-8d5f-43b8-8651-caf69acef0e4	eabe627c-2cc9-48cd-85c5-c7482f2077ed	4	166999053	166999053	A	T	SNP	TLL1	NM_012464.3	human	genbank	58_37c	+1	reviewed	splice_site	c.2315-2	e18-2	1.000	-	-	-	no_errors
