Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS19	0	genome.wustl.edu	37	5	129030517	129030517	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	129030517	129030517	C	T	SNP	ADAMTS19	NM_133638.3	human	genbank	58_37c	+1	reviewed	nonsense	c.2905	p.R969*	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADRA1A	0	genome.wustl.edu	37	8	26722154	26722154	+	Silent	SNP	G	A	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	8	26722154	26722154	G	A	SNP	ADRA1A	NM_033303.3	human	genbank	58_37c	-1	reviewed	silent	c.333	p.T111	0.521	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
AGAP10	0	genome.wustl.edu	37	10	47207813	47207813	+	Missense_Mutation	SNP	T	T	C	rs79933604	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	10	47207813	47207813	T	C	SNP	AGAP10	ENST00000413193	human	ensembl	58_37c	-1	known	missense	c.683	p.H228R	1.000	NULL	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AQP7	0	genome.wustl.edu	37	9	33395134	33395135	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	33395134	33395135	-	CC	INS	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.86_85	p.L29fs	0.007:0.000	HMMPfam_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
ATP10B	0	genome.wustl.edu	37	5	160033805	160033805	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	160033805	160033805	G	A	SNP	ATP10B	NM_025153.2	human	genbank	58_37c	-1	validated	nonsense	c.3127	p.R1043*	1.000	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
BOC	0	genome.wustl.edu	37	3	112969456	112969456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	112969456	112969456	G	A	SNP	BOC	NM_033254.2	human	genbank	58_37c	+1	validated	missense	c.152	p.G51D	0.997	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	PatternScan_N6_MTASE,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_CYTOCHROME_P450,superfamily_Immunoglobulin	-	no_errors
BTNL8	0	genome.wustl.edu	37	5	180335598	180335598	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	180335598	180335598	T	G	SNP	BTNL8	NM_001040462.2	human	genbank	58_37c	+1	validated	missense	c.62	p.V21G	0.867	HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_SPRY,HMMSmart_SM00589,HMMPfam_V-set,HMMSmart_SM00449,superfamily_Immunoglobulin	-	no_errors
CCDC144NL	0	genome.wustl.edu	37	17	20768762	20768763	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	20768762	20768763	-	C	INS	CCDC144NL	NM_001004306.1	human	genbank	58_37c	-1	provisional	frame_shift_ins	c.632_631	p.K211fs	0.020:0.028	NULL	NULL	-	no_errors
COL4A6	0	genome.wustl.edu	37	X	107422068	107422068	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	107422068	107422068	G	A	SNP	COL4A6	NM_001847.2	human	genbank	58_37c	-1	reviewed	silent	c.2364	p.H788	0.223	HMMPfam_Collagen	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
CTTNBP2	0	genome.wustl.edu	37	7	117375356	117375356	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	7	117375356	117375356	G	A	SNP	CTTNBP2	NM_033427.2	human	genbank	58_37c	-1	reviewed	missense	c.3655	p.R1219C	1.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_CortBP2	-	no_errors
DMD	0	genome.wustl.edu	37	X	31514996	31514996	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	31514996	31514996	A	C	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.8456	p.V2819G	1.000	HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DMD	0	genome.wustl.edu	37	X	32366618	32366618	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	32366618	32366618	G	T	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.5353	p.Q1785K	1.000	HMMSmart_SM00150	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DNM3	0	genome.wustl.edu	37	1	171956945	171956945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	171956945	171956945	G	A	SNP	DNM3	NM_015569.3	human	genbank	58_37c	+1	validated	missense	c.385	p.V129M	1.000	HMMPfam_Dynamin_N,HMMSmart_DYNc,superfamily_SSF52540	HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_DYNc,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED,PatternScan_DYNAMIN,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
ENSG00000198804	0	genome.wustl.edu	37	MT	6755	6755	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	MT	6755	6755	G	A	SNP	ENSG00000198804	ENST00000361624	human	ensembl	58_37c	+1	known	silent	c.852	p.G284	NULL	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	mismatch_between_exon_seq_and_reference
ENSG00000210112	0	genome.wustl.edu	37	MT	4429	4429	+	RNA	SNP	G	A	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	MT	4429	4429	G	A	SNP	ENSG00000210112	ENST00000387377	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000211459	0	genome.wustl.edu	37	MT	1301	1301	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	MT	1301	1301	G	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000226049	0	genome.wustl.edu	37	17	32366528	32366528	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	32366528	32366528	G	A	SNP	ENSG00000226049	ENST00000430493	human	ensembl	58_37c	-1	known	nonsense	c.361	p.R121*	0.081	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_stop_codon
ENSG00000236553	0	genome.wustl.edu	37	21	17560174	17560175	+	Frame_Shift_Ins	INS	-	-	TCCTTCCC	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	21	17560174	17560175	-	TCCTTCCC	INS	ENSG00000236553	ENST00000425334	human	ensembl	58_37c	-1	known	frame_shift_ins	c.88_87	p.R29fs	0.076:0.023	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000245250	0	genome.wustl.edu	37	1	202936357	202936357	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	202936357	202936357	A	C	SNP	ENSG00000245250	ENST00000501099	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000252396	0	genome.wustl.edu	37	1	237284330	237284331	+	RNA	INS	-	-	TG	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	237284330	237284331	-	TG	INS	ENSG00000252396	ENST00000516587	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
FAM108A5	0	genome.wustl.edu	37	22	21022380	21022380	+	Missense_Mutation	SNP	C	C	G	rs80158021	byCluster	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	22	21022380	21022380	C	G	SNP	FAM108A5	XM_002343784.1	human	genbank	58_37c	-1	model	missense	c.938	p.R313P	1.000	superfamily_alpha/beta-Hydrolases	superfamily_alpha/beta-Hydrolases	-	no_errors
FAM153C	0	genome.wustl.edu	37	5	177468759	177468759	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	177468759	177468759	C	T	SNP	FAM153C	NM_001079527.1	human	genbank	58_37c	+1	validated	missense	c.199	p.H67Y	0.000	NULL	NULL	-	no_errors
FAM70A	0	genome.wustl.edu	37	X	119421019	119421019	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	119421019	119421019	T	C	SNP	FAM70A	NM_017938.3	human	genbank	58_37c	-1	validated	missense	c.413	p.E138G	1.000	NULL	NULL	-	no_errors
FBN2	0	genome.wustl.edu	37	5	127685051	127685051	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	127685051	127685051	G	C	SNP	FBN2	NM_001999.3	human	genbank	58_37c	-1	reviewed	missense	c.2977	p.R993G	1.000	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FLJ46321	0	genome.wustl.edu	37	9	84607812	84607812	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	84607812	84607812	G	T	SNP	FLJ46321	NM_001001670.2	human	genbank	58_37c	+1	validated	missense	c.2427	p.M809I	0.000	NULL	NULL	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623210	29623210	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	20	29623210	29623210	C	T	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	missense	c.22	p.H8Y	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623224	29623224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	20	29623224	29623224	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	silent	c.36	p.V12	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GNL3L	0	genome.wustl.edu	37	X	54569444	54569444	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	54569444	54569444	G	A	SNP	GNL3L	NM_019067.5	human	genbank	58_37c	+1	reviewed	silent	c.363	p.R121	0.997	superfamily_SSF52540	HMMPfam_MMR_HSR1,superfamily_SSF52540	-	no_errors
GRASP	0	genome.wustl.edu	37	12	52407973	52407973	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	12	52407973	52407973	C	T	SNP	GRASP	NM_181711.2	human	genbank	58_37c	+1	provisional	missense	c.670	p.R224W	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
GRIN2C	0	genome.wustl.edu	37	17	72846369	72846369	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	72846369	72846369	G	A	SNP	GRIN2C	NM_000835.3	human	genbank	58_37c	-1	reviewed	silent	c.1467	p.G489	0.856	HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
H2BFM	0	genome.wustl.edu	37	X	103294608	103294608	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	103294608	103294608	T	C	SNP	H2BFM	XM_001723437.2	human	genbank	58_37c	+1	model	missense	c.374	p.I125T	0.000	NULL	HMMSmart_H2B,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HS3ST4	0	genome.wustl.edu	37	16	26147331	26147331	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	16	26147331	26147331	A	C	SNP	HS3ST4	ENST00000331351	human	ensembl	58_37c	+1	known	missense	c.1133	p.K378T	1.000	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IL17RE	0	genome.wustl.edu	37	3	9956194	9956194	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	9956194	9956194	T	C	SNP	IL17RE	ENST00000448654	human	ensembl	58_37c	+1	known	missense	c.1057	p.C353R	0.000	NULL	NULL	-	no_errors
INTS2	0	genome.wustl.edu	37	17	60005329	60005329	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	60005329	60005329	C	T	SNP	INTS2	NR_026641.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
ITGA3	0	genome.wustl.edu	37	17	48166523	48166523	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	17	48166523	48166523	A	G	SNP	ITGA3	NM_005501.2	human	genbank	58_37c	+1	reviewed	missense	c.3095	p.H1032R	1.000	NULL	HMMPfam_FG-GAP,HMMSmart_SM00191,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,superfamily_Integrin alpha N-terminal domain	-	no_errors
KY	0	genome.wustl.edu	37	3	134323234	134323234	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	134323234	134323234	C	T	SNP	KY	NM_178554.4	human	genbank	58_37c	-1	validated	silent	c.1173	p.G391	1.000	NULL	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases	-	no_errors
LCN8	0	genome.wustl.edu	37	9	139650268	139650269	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	139650268	139650269	-	CA	INS	LCN8	ENST00000392896	human	ensembl	58_37c	-1	known	frame_shift_ins	c.637_636	p.L212fs	0.005:0.005	NULL	NULL	-	no_errors
LOC100132247	0	genome.wustl.edu	37	16	22545906	22545906	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	16	22545906	22545906	C	T	SNP	LOC100132247	NM_001135865.1	human	genbank	58_37c	+1	validated	silent	c.1602	p.A534	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454922	66454922	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	66454922	66454922	A	G	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	silent	c.33	p.S11	0.131	NULL	NULL	-	no_errors
LOC100287980	0	genome.wustl.edu	37	8	48001270	48001270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	8	48001270	48001270	G	A	SNP	LOC100287980	XM_002342844.1	human	genbank	58_37c	-1	model	missense	c.649	p.H217Y	0.015	NULL	NULL	-	no_errors
LOC100289317	0	genome.wustl.edu	37	22	45723948	45723948	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	22	45723948	45723948	T	C	SNP	LOC100289317	XM_002343782.1	human	genbank	58_37c	-1	model	silent	c.294	p.P98	0.352	NULL	NULL	-	no_errors
LOC654342	0	genome.wustl.edu	37	2	91843025	91843025	+	Splice_Site	SNP	T	T	C	rs228160	byFrequency	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	2	91843025	91843025	T	C	SNP	LOC654342	NR_027238.1	human	genbank	58_37c	-1	provisional	splice_site	c.NULL	NULL	0.177	-	-	-	pseudogene
LOC730041	0	genome.wustl.edu	37	2	132218695	132218695	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	2	132218695	132218695	G	A	SNP	LOC730041	XR_042314.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.860	-	-	-	pseudogene
MAST1	0	genome.wustl.edu	37	19	12962989	12962989	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	12962989	12962989	G	A	SNP	MAST1	NM_014975.2	human	genbank	58_37c	+1	validated	missense	c.937	p.G313S	1.000	HMMPfam_DUF1908	HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
MRPS27	0	genome.wustl.edu	37	5	71616019	71616019	+	Missense_Mutation	SNP	C	C	T	rs147211361	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	71616019	71616019	C	T	SNP	MRPS27	NM_015084.2	human	genbank	58_37c	-1	reviewed	missense	c.30	p.M10I	0.000	HMMPfam_MRP-S27	HMMPfam_MRP-S27	-	no_errors
MUC2	0	genome.wustl.edu	37	11	1093245	1093245	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	11	1093245	1093245	A	T	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	silent	c.5064	p.P1688	0.005	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
NCF2	0	genome.wustl.edu	37	1	183556058	183556058	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	183556058	183556058	G	A	SNP	NCF2	NM_000433.3	human	genbank	58_37c	-1	reviewed	nonsense	c.229	p.R77*	0.946	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452	HMMPfam_PB1,HMMSmart_PB1,HMMPfam_TPR_1,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_TPR,superfamily_SSF48452,superfamily_SSF54277	-	no_errors
OR52K1	0	genome.wustl.edu	37	11	4510284	4510284	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	11	4510284	4510284	C	T	SNP	OR52K1	NM_001005171.2	human	genbank	58_37c	+1	validated	nonsense	c.154	p.Q52*	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHB8	0	genome.wustl.edu	37	5	140558070	140558070	+	Missense_Mutation	SNP	C	C	A	rs17844484	byCluster	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	5	140558070	140558070	C	A	SNP	PCDHB8	NM_019120.2	human	genbank	58_37c	+1	reviewed	missense	c.455	p.A152E	0.000	HMMPfam_Cadherin,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178916924	178916924	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	3	178916924	178916924	C	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.311	p.P104L	1.000	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PKHD1L1	0	genome.wustl.edu	37	8	110527447	110527447	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	8	110527447	110527447	T	C	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	missense	c.11602	p.Y3868H	1.000	NULL	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
PLA2G4D	0	genome.wustl.edu	37	15	42374005	42374005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	15	42374005	42374005	C	T	SNP	PLA2G4D	NM_178034.3	human	genbank	58_37c	-1	validated	missense	c.811	p.A271T	0.260	HMMSmart_SM00022	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FabD/lysophospholipase-like	-	no_errors
POTEG	0	genome.wustl.edu	37	14	19571357	19571357	+	Missense_Mutation	SNP	T	T	C	rs2845206	byHapMap	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	14	19571357	19571357	T	C	SNP	POTEG	NM_001005356.2	human	genbank	58_37c	+1	validated	missense	c.1136	p.L379S	0.021	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
PRRX1	0	genome.wustl.edu	37	1	170695530	170695530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	170695530	170695530	C	T	SNP	PRRX1	NM_022716.2	human	genbank	58_37c	+1	reviewed	missense	c.587	p.A196V	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_OAR,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
PTPRD	0	genome.wustl.edu	37	9	8504378	8504378	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	8504378	8504378	A	G	SNP	PTPRD	NM_002839.3	human	genbank	58_37c	-1	reviewed	missense	c.1705	p.S569P	0.998	HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_TYR_PHOSPHATASE_1,superfamily_Immunoglobulin,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
PTPRZ1	0	genome.wustl.edu	37	7	121695126	121695126	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	7	121695126	121695126	C	T	SNP	PTPRZ1	NM_002851.2	human	genbank	58_37c	+1	reviewed	silent	c.6513	p.I2171	0.999	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
QSOX1	0	genome.wustl.edu	37	1	180135688	180135688	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	180135688	180135688	T	A	SNP	QSOX1	NM_002826.4	human	genbank	58_37c	+1	reviewed	missense	c.328	p.C110S	0.986	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	HMMPfam_Evr1_Alr,superfamily_FAD-dependent thiol oxidase,superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	-	no_errors
RDH16	0	genome.wustl.edu	37	12	57351117	57351117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	12	57351117	57351117	G	A	SNP	RDH16	ENST00000360752	human	ensembl	58_37c	-1	known	missense	c.17	p.T6I	0.997	NULL	NULL	-	no_start_codon
RHPN2	0	genome.wustl.edu	37	19	33490500	33490500	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	33490500	33490500	C	T	SNP	RHPN2	NM_033103.4	human	genbank	58_37c	-1	reviewed	missense	c.1217	p.R406Q	0.000	HMMPfam_BRO1	HMMPfam_HR1,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_BRO1,HMMSmart_Hr1,superfamily_PKN_effector	-	no_errors
RPGR	0	genome.wustl.edu	37	X	38146589	38146589	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	X	38146589	38146589	T	C	SNP	RPGR	ENST00000339363	human	ensembl	58_37c	-1	known	missense	c.2278	p.K760E	0.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
RYR3	0	genome.wustl.edu	37	15	33872233	33872233	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	15	33872233	33872233	C	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	missense	c.1325	p.T442N	1.000	HMMPfam_RYDR_ITPR	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SECISBP2	0	genome.wustl.edu	37	9	91934622	91934622	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	9	91934622	91934622	A	G	SNP	SECISBP2	NM_024077.3	human	genbank	58_37c	+1	reviewed	missense	c.92	p.N31S	0.008	NULL	HMMPfam_Ribosomal_L7Ae,superfamily_L30e-like	-	no_errors
SLC22A1	0	genome.wustl.edu	37	6	160560827	160560827	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	6	160560827	160560827	C	T	SNP	SLC22A1	NM_003057.2	human	genbank	58_37c	+1	reviewed	missense	c.1204	p.R402C	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC7A9	0	genome.wustl.edu	37	19	33355671	33355671	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	33355671	33355671	G	A	SNP	SLC7A9	NM_001126335.1	human	genbank	58_37c	-1	reviewed	silent	c.99	p.I33	0.991	NULL	HMMPfam_AA_permease	-	no_errors
SPTA1	0	genome.wustl.edu	37	1	158627369	158627369	+	Missense_Mutation	SNP	G	G	T	rs144579942	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	158627369	158627369	G	T	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	missense	c.2703	p.F901L	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
STX10	0	genome.wustl.edu	37	19	13255448	13255448	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	19	13255448	13255448	G	C	SNP	STX10	NM_003765.1	human	genbank	58_37c	-1	provisional	missense	c.616	p.Q206E	0.993	HMMPfam_SNARE,HMMSmart_SM00397	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins,HMMPfam_Syntaxin-6_N	-	no_errors
TRIP6	0	genome.wustl.edu	37	7	100470878	100470878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	7	100470878	100470878	G	A	SNP	TRIP6	NM_003302.2	human	genbank	58_37c	+1	reviewed	missense	c.1384	p.A462T	1.000	HMMPfam_LIM	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
TRPC4	0	genome.wustl.edu	37	13	38213437	38213437	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	13	38213437	38213437	C	G	SNP	TRPC4	NM_003306.1	human	genbank	58_37c	-1	validated	splice_site	c.2095-1	e8-1	1.000	-	-	-	no_errors
TUBGCP3	0	genome.wustl.edu	37	13	113140381	113140381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	13	113140381	113140381	C	T	SNP	TUBGCP3	NM_006322.4	human	genbank	58_37c	-1	provisional	missense	c.2650	p.E884K	1.000	NULL	HMMPfam_Spc97_Spc98	-	no_errors
UNC5B	0	genome.wustl.edu	37	10	73044530	73044530	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	10	73044530	73044530	C	A	SNP	UNC5B	NM_170744.3	human	genbank	58_37c	+1	validated	missense	c.358	p.L120I	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
USP1	0	genome.wustl.edu	37	1	62910497	62910497	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	1	62910497	62910497	C	T	SNP	USP1	NM_001017415.1	human	genbank	58_37c	+1	reviewed	nonsense	c.646	p.Q216*	1.000	HMMPfam_UCH,superfamily_SSF54001	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
ZNF598	0	genome.wustl.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-E9-A1RE-01A-11D-A159-09	TCGA-E9-A1RE-10A-01D-A159-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4a9c0873-f496-48a4-853c-2b41b2dbaa9e	56e80c27-e4b1-4c17-a104-61ae05c5ce82	16	2049882	2049883	-	TCC	INS	ZNF598	ENST00000431526	human	ensembl	58_37c	-1	known	in_frame_ins	c.1668_1667	p.556in_frame_insE	0.000:0.023	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_RING/U-box	-	no_errors
